Query 015728
Match_columns 401
No_of_seqs 280 out of 2597
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 3E-34 1E-38 275.6 24.3 281 109-399 46-341 (354)
2 3nmz_A APC variant protein; pr 100.0 1.4E-33 4.7E-38 278.9 21.1 277 112-398 165-456 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 4E-31 1.4E-35 263.7 24.8 279 95-392 4-360 (457)
4 3nmz_A APC variant protein; pr 100.0 1.1E-30 3.9E-35 258.0 24.5 296 93-398 70-414 (458)
5 3l6x_A Catenin delta-1; cateni 100.0 2E-30 6.9E-35 261.9 26.5 284 90-392 45-384 (584)
6 3ul1_B Importin subunit alpha- 100.0 9.7E-30 3.3E-34 257.1 25.0 287 86-392 89-387 (510)
7 3now_A UNC-45 protein, SD10334 100.0 3E-29 1E-33 261.3 27.6 285 93-398 421-743 (810)
8 3tpo_A Importin subunit alpha- 100.0 4.3E-29 1.5E-33 253.6 27.4 287 92-398 118-413 (529)
9 3ul1_B Importin subunit alpha- 100.0 2E-29 6.9E-34 254.8 23.5 284 95-397 59-350 (510)
10 3nmw_A APC variant protein; AR 100.0 4E-29 1.4E-33 240.0 18.7 244 93-353 73-338 (354)
11 3tpo_A Importin subunit alpha- 100.0 2.9E-28 1E-32 247.4 25.9 285 94-397 77-369 (529)
12 1xm9_A Plakophilin 1; armadill 100.0 1.3E-28 4.3E-33 245.6 22.5 277 93-392 44-449 (457)
13 3now_A UNC-45 protein, SD10334 100.0 1.1E-28 3.8E-33 257.1 22.8 286 93-399 377-701 (810)
14 3l6x_A Catenin delta-1; cateni 100.0 1.2E-27 4E-32 241.8 25.3 279 93-392 90-476 (584)
15 4b8j_A Importin subunit alpha- 100.0 8.9E-27 3E-31 236.2 27.2 287 93-397 74-363 (528)
16 4hxt_A De novo protein OR329; 100.0 6.7E-27 2.3E-31 213.2 22.2 240 137-395 2-244 (252)
17 4b8j_A Importin subunit alpha- 100.0 2.8E-26 9.4E-31 232.6 29.0 286 92-398 116-407 (528)
18 4db8_A Armadillo-repeat protei 99.9 2.7E-26 9.1E-31 210.0 20.7 238 136-392 11-251 (252)
19 2jdq_A Importin alpha-1 subuni 99.9 4.5E-25 1.6E-29 218.3 29.4 288 93-399 64-355 (450)
20 1wa5_B Importin alpha subunit; 99.9 1.7E-25 5.7E-30 227.0 26.5 286 93-398 87-376 (530)
21 1wa5_B Importin alpha subunit; 99.9 5.1E-25 1.8E-29 223.4 27.3 281 93-393 130-413 (530)
22 4hxt_A De novo protein OR329; 99.9 2.4E-25 8.4E-30 202.8 21.9 238 94-351 3-243 (252)
23 4db8_A Armadillo-repeat protei 99.9 9.8E-26 3.3E-30 206.2 18.9 234 95-349 14-251 (252)
24 1jdh_A Beta-catenin; beta-cate 99.9 6.4E-25 2.2E-29 221.9 21.8 279 93-393 59-340 (529)
25 3tt9_A Plakophilin-2; cell adh 99.9 3.7E-25 1.2E-29 199.0 17.4 199 94-307 9-230 (233)
26 3tt9_A Plakophilin-2; cell adh 99.9 1.7E-25 5.7E-30 201.2 14.8 200 138-350 9-230 (233)
27 2z6h_A Catenin beta-1, beta-ca 99.9 2.2E-24 7.4E-29 224.0 22.9 278 93-392 56-336 (644)
28 2jdq_A Importin alpha-1 subuni 99.9 3.2E-23 1.1E-27 205.0 29.6 282 93-395 107-393 (450)
29 1jdh_A Beta-catenin; beta-cate 99.9 1.2E-23 4E-28 212.6 22.4 278 93-392 101-385 (529)
30 2z6g_A B-catenin; FULL-length, 99.9 3E-23 1E-27 219.6 23.0 278 93-392 192-472 (780)
31 4db6_A Armadillo repeat protei 99.9 7E-23 2.4E-27 182.0 20.5 197 186-392 10-209 (210)
32 2z6h_A Catenin beta-1, beta-ca 99.9 6.3E-23 2.2E-27 213.0 23.3 278 93-392 98-382 (644)
33 3opb_A SWI5-dependent HO expre 99.9 2.7E-22 9.2E-27 205.7 21.5 278 95-392 378-728 (778)
34 4db6_A Armadillo repeat protei 99.9 2E-22 7E-27 179.0 18.0 197 135-349 10-209 (210)
35 2z6g_A B-catenin; FULL-length, 99.9 5.9E-22 2E-26 209.7 23.5 278 93-392 234-518 (780)
36 1xqr_A HSPBP1 protein; armadil 99.9 4.4E-21 1.5E-25 179.4 20.3 226 106-349 51-287 (296)
37 1xqr_A HSPBP1 protein; armadil 99.8 6E-20 2E-24 171.7 21.0 186 159-355 54-244 (296)
38 3opb_A SWI5-dependent HO expre 99.8 5.7E-20 2E-24 188.5 19.3 280 94-395 335-686 (778)
39 2kre_A Ubiquitin conjugation f 99.8 1.3E-18 4.4E-23 135.2 7.6 77 5-82 22-98 (100)
40 2kr4_A Ubiquitin conjugation f 99.7 7.3E-19 2.5E-23 132.7 5.1 76 4-80 6-81 (85)
41 1wgm_A Ubiquitin conjugation f 99.7 3.2E-18 1.1E-22 132.4 8.4 78 5-83 15-93 (98)
42 1t1h_A Gspef-atpub14, armadill 99.7 1.6E-18 5.6E-23 129.0 6.2 75 7-81 3-77 (78)
43 2f42_A STIP1 homology and U-bo 99.7 4.4E-17 1.5E-21 138.9 7.2 77 6-82 100-176 (179)
44 3ztg_A E3 ubiquitin-protein li 99.6 4.5E-16 1.5E-20 119.6 8.2 77 5-81 6-85 (92)
45 2yu4_A E3 SUMO-protein ligase 99.6 2.1E-16 7.1E-21 121.7 6.0 74 9-82 4-86 (94)
46 2c2l_A CHIP, carboxy terminus 99.6 3.1E-16 1.1E-20 145.8 7.0 77 5-81 201-277 (281)
47 3grl_A General vesicular trans 99.6 1.2E-13 4.2E-18 138.4 24.3 285 92-392 20-342 (651)
48 3grl_A General vesicular trans 99.5 7.3E-13 2.5E-17 132.9 23.2 284 92-392 59-394 (651)
49 3fl2_A E3 ubiquitin-protein li 99.5 6.8E-15 2.3E-19 119.5 6.3 69 9-77 49-118 (124)
50 1z6u_A NP95-like ring finger p 99.5 1.6E-14 5.5E-19 120.9 5.1 69 9-77 75-144 (150)
51 3lrq_A E3 ubiquitin-protein li 99.5 1.5E-14 5.3E-19 112.6 4.1 71 9-79 19-90 (100)
52 2y43_A E3 ubiquitin-protein li 99.5 2.9E-14 9.9E-19 110.9 4.8 69 10-79 20-89 (99)
53 2ecw_A Tripartite motif-contai 99.5 1E-14 3.5E-19 110.1 1.9 69 2-70 9-82 (85)
54 2ecv_A Tripartite motif-contai 99.4 1.8E-14 6.2E-19 108.7 1.4 69 2-70 9-82 (85)
55 2csy_A Zinc finger protein 183 99.4 6E-14 2.1E-18 104.9 4.0 61 6-68 9-69 (81)
56 2egp_A Tripartite motif-contai 99.4 4.2E-15 1.4E-19 110.7 -2.6 66 5-70 5-76 (79)
57 2ecy_A TNF receptor-associated 99.4 1.6E-13 5.5E-18 98.2 5.5 57 5-61 8-64 (66)
58 2ckl_A Polycomb group ring fin 99.4 1.1E-13 3.7E-18 109.5 4.3 68 9-77 12-84 (108)
59 3hct_A TNF receptor-associated 99.4 1.3E-13 4.6E-18 110.7 4.5 73 6-78 12-84 (118)
60 1jm7_B BARD1, BRCA1-associated 99.4 1.2E-13 4.1E-18 110.9 3.5 67 10-79 20-87 (117)
61 2djb_A Polycomb group ring fin 99.4 4.4E-13 1.5E-17 97.7 6.0 59 6-65 9-68 (72)
62 3l11_A E3 ubiquitin-protein li 99.4 7E-14 2.4E-18 111.9 1.7 69 8-76 11-86 (115)
63 2yur_A Retinoblastoma-binding 99.4 4.9E-13 1.7E-17 98.0 6.1 55 5-59 8-64 (74)
64 3htk_C E3 SUMO-protein ligase 99.4 1.9E-13 6.6E-18 121.8 3.9 70 9-78 178-251 (267)
65 2ysl_A Tripartite motif-contai 99.4 6.6E-13 2.3E-17 97.0 5.5 56 7-62 15-72 (73)
66 1jm7_A BRCA1, breast cancer ty 99.3 2.8E-13 9.5E-18 107.8 3.4 68 10-77 19-88 (112)
67 2ckl_B Ubiquitin ligase protei 99.3 3E-13 1E-17 115.4 3.7 70 9-78 51-122 (165)
68 4ayc_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 110.8 4.0 64 10-76 51-114 (138)
69 2ysj_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 92.0 5.7 47 7-53 15-63 (63)
70 3ltm_A Alpha-REP4; protein eng 99.3 1.5E-10 5.2E-15 102.2 19.4 185 136-392 18-203 (211)
71 1rmd_A RAG1; V(D)J recombinati 99.3 5.8E-13 2E-17 106.7 2.7 68 9-76 20-88 (116)
72 1g25_A CDK-activating kinase a 99.3 1.2E-12 4.1E-17 93.3 4.0 55 11-65 2-61 (65)
73 2ct2_A Tripartite motif protei 99.3 6E-12 2E-16 95.4 6.6 57 4-60 7-69 (88)
74 3knv_A TNF receptor-associated 99.3 5E-13 1.7E-17 110.5 0.4 70 8-77 27-105 (141)
75 3hcs_A TNF receptor-associated 99.3 2E-12 6.7E-17 110.9 4.1 71 6-76 12-82 (170)
76 3ltj_A Alpharep-4; protein eng 99.2 3.8E-10 1.3E-14 98.8 18.0 185 136-392 13-198 (201)
77 2ecj_A Tripartite motif-contai 99.2 7.2E-12 2.5E-16 87.0 4.5 48 6-53 9-58 (58)
78 3ng2_A RNF4, snurf, ring finge 99.2 4.6E-12 1.6E-16 91.9 3.5 57 8-65 6-69 (71)
79 2d8t_A Dactylidin, ring finger 99.2 7.3E-12 2.5E-16 90.9 3.9 50 9-59 12-61 (71)
80 1oyz_A Hypothetical protein YI 99.2 1.4E-09 5E-14 100.2 20.3 223 94-390 24-248 (280)
81 3ltm_A Alpha-REP4; protein eng 99.2 1.3E-09 4.3E-14 96.2 18.8 188 91-351 17-205 (211)
82 2ea6_A Ring finger protein 4; 99.2 1.1E-11 3.7E-16 89.3 3.8 52 7-59 10-68 (69)
83 1e4u_A Transcriptional repress 99.2 2.2E-11 7.6E-16 89.6 5.1 55 7-61 6-64 (78)
84 2bay_A PRE-mRNA splicing facto 99.2 7.8E-12 2.7E-16 87.4 2.0 54 12-66 3-57 (61)
85 2ect_A Ring finger protein 126 99.1 3.2E-11 1.1E-15 89.2 5.2 58 7-65 10-70 (78)
86 1oyz_A Hypothetical protein YI 99.1 1.9E-09 6.7E-14 99.3 18.0 200 133-391 19-220 (280)
87 3ltj_A Alpharep-4; protein eng 99.1 4.7E-09 1.6E-13 91.8 19.5 187 89-348 10-197 (201)
88 2xeu_A Ring finger protein 4; 99.1 1.3E-11 4.4E-16 87.5 1.9 53 11-64 2-61 (64)
89 4gmo_A Putative uncharacterize 99.1 2.5E-09 8.6E-14 111.3 17.1 197 188-391 34-257 (684)
90 1bor_A Transcription factor PM 99.0 4.8E-11 1.6E-15 82.1 2.0 47 10-60 4-50 (56)
91 2kiz_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 81.6 5.8 52 8-60 10-64 (69)
92 1chc_A Equine herpes virus-1 r 99.0 1.5E-10 5E-15 83.1 3.9 48 11-59 4-52 (68)
93 2l0b_A E3 ubiquitin-protein li 99.0 2.3E-10 7.8E-15 87.2 4.8 50 9-59 37-89 (91)
94 2ecm_A Ring finger and CHY zin 99.0 2.1E-10 7E-15 78.6 4.1 47 11-58 4-54 (55)
95 1iym_A EL5; ring-H2 finger, ub 99.0 1.9E-10 6.5E-15 78.8 3.7 49 9-58 2-54 (55)
96 2ecn_A Ring finger protein 141 99.0 9.3E-11 3.2E-15 84.7 2.2 51 8-60 11-61 (70)
97 2ep4_A Ring finger protein 24; 99.0 3.9E-10 1.3E-14 82.3 5.1 52 7-59 10-64 (74)
98 4fdd_A Transportin-1; heat rep 99.0 1E-08 3.4E-13 109.5 17.8 282 93-398 128-477 (852)
99 1x4j_A Ring finger protein 38; 99.0 3E-10 1E-14 83.2 4.1 49 10-59 21-72 (75)
100 4ap4_A E3 ubiquitin ligase RNF 98.9 2E-10 6.7E-15 94.0 2.5 53 10-63 5-64 (133)
101 4gmo_A Putative uncharacterize 98.9 1.9E-08 6.5E-13 104.6 15.8 196 138-348 35-257 (684)
102 4fdd_A Transportin-1; heat rep 98.9 4.4E-08 1.5E-12 104.5 18.5 266 106-396 101-433 (852)
103 1v87_A Deltex protein 2; ring- 98.9 1.3E-09 4.3E-14 86.7 4.6 49 11-59 24-94 (114)
104 4ic3_A E3 ubiquitin-protein li 98.8 5.8E-10 2E-14 81.4 1.6 45 10-59 22-67 (74)
105 1ibr_B P95, importin beta-1 su 98.8 8.2E-08 2.8E-12 94.3 15.9 287 93-398 128-443 (462)
106 2y1n_A E3 ubiquitin-protein li 98.8 4.2E-09 1.4E-13 100.0 4.9 49 12-60 332-380 (389)
107 1b3u_A Protein (protein phosph 98.8 3.7E-07 1.2E-11 92.5 19.5 268 93-395 87-356 (588)
108 1b3u_A Protein (protein phosph 98.8 4.9E-07 1.7E-11 91.5 20.4 215 106-349 175-392 (588)
109 3m62_A Ubiquitin conjugation f 98.7 3.8E-09 1.3E-13 110.1 4.1 75 6-81 885-960 (968)
110 2ecg_A Baculoviral IAP repeat- 98.7 4E-09 1.4E-13 77.1 2.2 45 10-59 23-68 (75)
111 1wim_A KIAA0161 protein; ring 98.7 2.7E-09 9.2E-14 81.7 0.6 46 11-56 4-61 (94)
112 4ap4_A E3 ubiquitin ligase RNF 98.7 3.1E-09 1.1E-13 86.7 1.0 54 10-64 70-130 (133)
113 2ecl_A Ring-box protein 2; RNF 98.7 1E-08 3.5E-13 76.1 3.6 48 11-59 14-76 (81)
114 2vje_A E3 ubiquitin-protein li 98.6 2E-08 6.8E-13 70.8 4.3 48 10-58 6-56 (64)
115 2vgl_B AP-2 complex subunit be 98.6 5.5E-07 1.9E-11 92.1 15.4 266 98-397 126-424 (591)
116 2vje_B MDM4 protein; proto-onc 98.6 3.4E-08 1.1E-12 69.4 3.9 47 11-58 6-55 (63)
117 3dpl_R Ring-box protein 1; ubi 98.5 4.8E-08 1.7E-12 76.0 4.4 47 11-58 36-100 (106)
118 2vgl_B AP-2 complex subunit be 98.5 9.1E-07 3.1E-11 90.5 15.0 261 96-398 52-317 (591)
119 1w63_A Adapter-related protein 98.5 7.3E-06 2.5E-10 84.2 21.5 258 97-398 38-348 (618)
120 2ea5_A Cell growth regulator w 98.5 8.2E-08 2.8E-12 68.5 4.5 47 8-59 11-58 (68)
121 2yho_A E3 ubiquitin-protein li 98.5 2.5E-08 8.4E-13 73.5 0.9 45 10-59 16-61 (79)
122 1qgr_A Protein (importin beta 98.4 7E-06 2.4E-10 87.2 17.6 280 94-395 173-482 (876)
123 3t6p_A Baculoviral IAP repeat- 98.4 7.1E-08 2.4E-12 91.1 1.4 45 10-59 293-338 (345)
124 2bpt_A Importin beta-1 subunit 98.4 7.4E-06 2.5E-10 86.8 16.9 269 106-398 380-674 (861)
125 1qgr_A Protein (importin beta 98.3 6.6E-05 2.2E-09 79.7 23.6 283 93-396 128-441 (876)
126 1ibr_B P95, importin beta-1 su 98.3 2.8E-05 9.4E-10 76.0 19.1 280 95-396 37-361 (462)
127 2qk2_A LP04448P; mini spindles 98.3 1.3E-05 4.4E-10 72.0 14.5 187 192-397 19-210 (242)
128 1w63_A Adapter-related protein 98.3 6.7E-05 2.3E-09 77.0 21.1 251 95-394 144-416 (618)
129 1u6g_C TIP120 protein, CAND1; 98.2 6.5E-06 2.2E-10 91.2 13.3 267 106-398 17-290 (1230)
130 2d8s_A Cellular modulator of i 98.2 2E-06 6.7E-11 63.2 6.1 52 9-60 12-71 (80)
131 3b2a_A TON_1937, putative unch 98.2 1.7E-05 5.9E-10 69.3 12.8 186 91-307 31-219 (265)
132 4a0k_B E3 ubiquitin-protein li 98.2 1.8E-07 6.2E-12 73.9 0.2 46 12-58 48-111 (117)
133 2bpt_A Importin beta-1 subunit 98.2 5.9E-05 2E-09 79.9 18.2 291 93-398 498-818 (861)
134 1te4_A Conserved protein MTH18 98.1 1.3E-06 4.4E-11 70.8 3.0 119 136-303 11-130 (131)
135 1te4_A Conserved protein MTH18 98.0 8E-07 2.7E-11 72.0 0.5 120 186-346 10-130 (131)
136 2qk2_A LP04448P; mini spindles 97.9 6.7E-05 2.3E-09 67.2 11.4 179 98-307 20-206 (242)
137 4ady_A RPN2, 26S proteasome re 97.9 0.0012 4E-08 69.8 21.4 200 139-392 474-676 (963)
138 2qk1_A Protein STU2; STU2P, XM 97.9 0.00024 8.2E-09 64.1 14.1 194 193-397 21-225 (249)
139 2vgl_A Adaptor protein complex 97.8 0.0025 8.4E-08 65.3 21.5 256 98-395 151-436 (621)
140 3dad_A FH1/FH2 domain-containi 97.7 0.001 3.5E-08 61.6 15.9 177 93-284 119-315 (339)
141 2db0_A 253AA long hypothetical 97.7 0.013 4.4E-07 49.4 20.8 211 136-390 31-244 (253)
142 3b2a_A TON_1937, putative unch 97.7 0.00016 5.3E-09 63.4 9.7 223 137-392 33-261 (265)
143 3vk6_A E3 ubiquitin-protein li 97.7 2.4E-05 8.3E-10 58.6 3.9 45 14-58 3-48 (101)
144 2ct0_A Non-SMC element 1 homol 97.7 3.4E-05 1.2E-09 55.4 4.4 48 12-59 15-64 (74)
145 3dad_A FH1/FH2 domain-containi 97.7 0.00078 2.7E-08 62.4 14.3 144 248-395 133-289 (339)
146 1u6g_C TIP120 protein, CAND1; 97.7 0.00013 4.5E-09 80.7 10.9 234 139-398 8-249 (1230)
147 3tjz_B Coatomer subunit gamma; 97.6 0.0016 5.5E-08 61.6 15.8 253 107-399 39-323 (355)
148 2iw3_A Elongation factor 3A; a 97.6 0.012 4.1E-07 62.7 23.9 264 92-393 53-325 (986)
149 2qk1_A Protein STU2; STU2P, XM 97.6 0.00091 3.1E-08 60.3 13.3 188 98-306 21-220 (249)
150 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.0002 6.9E-09 49.2 4.8 49 11-59 5-59 (60)
151 1ho8_A Vacuolar ATP synthase s 97.4 0.0071 2.4E-07 58.8 17.3 222 162-392 185-476 (480)
152 4ady_A RPN2, 26S proteasome re 97.3 0.029 1E-06 59.2 22.6 245 94-391 393-640 (963)
153 2vgl_A Adaptor protein complex 97.3 0.012 4.2E-07 60.1 19.1 243 108-392 87-358 (621)
154 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00016 5.5E-09 66.7 0.2 47 12-58 308-372 (381)
155 2db0_A 253AA long hypothetical 96.8 0.19 6.4E-06 42.4 23.2 214 93-349 32-246 (253)
156 1ho8_A Vacuolar ATP synthase s 96.5 0.73 2.5E-05 44.8 26.5 238 135-392 75-350 (480)
157 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0025 8.6E-08 48.7 2.6 33 11-43 2-37 (101)
158 2iw3_A Elongation factor 3A; a 95.8 0.13 4.6E-06 54.7 14.6 247 108-392 27-280 (986)
159 4ffb_C Protein STU2; tubulin f 95.7 0.079 2.7E-06 48.0 11.1 195 189-398 11-218 (278)
160 3nw0_A Non-structural maintena 95.2 0.014 4.8E-07 51.9 4.1 48 12-59 180-229 (238)
161 2fv2_A RCD1 required for cell 95.2 0.84 2.9E-05 40.5 15.2 154 110-272 71-234 (268)
162 3i2d_A E3 SUMO-protein ligase 95.2 0.014 4.9E-07 54.6 4.1 63 12-74 249-315 (371)
163 3ebb_A Phospholipase A2-activa 95.1 0.18 6.1E-06 46.4 11.3 149 238-389 151-303 (304)
164 3oc3_A Helicase MOT1, MOT1; re 94.7 0.67 2.3E-05 45.9 14.6 242 106-388 185-432 (800)
165 1wa5_C Importin alpha RE-expor 94.7 0.62 2.1E-05 49.9 16.1 258 110-392 376-670 (960)
166 4fo9_A E3 SUMO-protein ligase 94.6 0.028 9.5E-07 52.5 4.5 63 12-74 215-281 (360)
167 4ffb_C Protein STU2; tubulin f 94.0 0.72 2.5E-05 41.5 12.8 178 106-306 20-212 (278)
168 3tjz_B Coatomer subunit gamma; 93.8 3.4 0.00011 38.7 17.1 100 237-351 107-207 (355)
169 2fv2_A RCD1 required for cell 93.5 0.47 1.6E-05 42.1 9.9 103 294-400 73-181 (268)
170 3ebb_A Phospholipase A2-activa 93.4 2.3 7.7E-05 39.0 15.0 176 138-331 104-287 (304)
171 3u0r_A Apoptosis inhibitor 5; 92.4 4.5 0.00015 39.3 15.7 127 237-388 32-159 (507)
172 2of3_A ZYG-9; multifunctional 91.6 2.7 9.1E-05 37.7 12.5 138 244-398 98-242 (266)
173 2of3_A ZYG-9; multifunctional 90.7 2.4 8.1E-05 38.0 11.3 169 107-305 58-235 (266)
174 2x1g_F Cadmus; transport prote 89.9 22 0.00077 37.6 20.3 219 161-398 480-728 (971)
175 2cs3_A Protein C14ORF4, MY039 89.8 0.41 1.4E-05 33.9 4.2 43 10-52 13-63 (93)
176 1weo_A Cellulose synthase, cat 89.7 0.43 1.5E-05 34.6 4.3 49 11-59 15-70 (93)
177 3eg5_B Protein diaphanous homo 89.3 14 0.00049 34.8 16.1 185 95-285 68-275 (383)
178 2ko5_A Ring finger protein Z; 88.1 0.41 1.4E-05 35.1 3.4 48 11-60 27-74 (99)
179 2x19_B Importin-13; nuclear tr 87.8 24 0.00081 37.3 18.6 220 160-397 464-719 (963)
180 1wa5_C Importin alpha RE-expor 86.6 36 0.0012 36.1 20.0 227 107-348 417-669 (960)
181 2f31_A Diaphanous protein homo 86.2 4 0.00014 35.7 9.6 120 272-392 41-180 (233)
182 2x19_B Importin-13; nuclear tr 83.8 8.7 0.0003 40.8 12.6 173 198-391 459-645 (963)
183 3l9t_A Putative uncharacterize 83.5 11 0.00038 33.0 10.8 141 191-360 74-218 (240)
184 2f31_A Diaphanous protein homo 83.0 23 0.00077 30.8 15.5 167 113-284 19-208 (233)
185 3c2g_A SYS-1 protein; beta-cat 82.7 16 0.00055 34.0 11.9 110 257-371 266-376 (619)
186 3c2g_A SYS-1 protein; beta-cat 81.1 36 0.0012 31.7 14.4 115 162-284 260-377 (619)
187 4hat_C Exportin-1; heat repeat 81.1 25 0.00087 37.8 14.9 141 200-351 465-620 (1023)
188 4hat_C Exportin-1; heat repeat 79.9 69 0.0024 34.4 18.5 225 89-349 12-263 (1023)
189 3u0r_A Apoptosis inhibitor 5; 77.2 55 0.0019 31.7 18.9 133 94-259 27-160 (507)
190 2bnx_A Diaphanous protein homo 75.8 26 0.0009 33.0 11.7 120 248-370 73-211 (386)
191 3m1i_C Exportin-1; heat repeat 75.1 61 0.0021 34.7 15.9 176 192-390 20-222 (1049)
192 3eg5_B Protein diaphanous homo 75.0 56 0.0019 30.7 15.4 136 234-374 109-276 (383)
193 1upk_A MO25 protein; transfera 73.7 56 0.0019 30.1 15.1 198 186-392 76-283 (341)
194 3oc3_A Helicase MOT1, MOT1; re 73.3 7.2 0.00025 38.9 7.0 121 161-305 279-403 (800)
195 1lrv_A LRV, leucine-rich repea 72.6 1.2 4.1E-05 39.5 1.3 58 328-387 178-241 (244)
196 3mjh_B Early endosome antigen 72.4 0.83 2.8E-05 26.9 0.2 16 11-26 4-19 (34)
197 3m1i_C Exportin-1; heat repeat 72.3 1.1E+02 0.0037 32.8 18.9 211 107-350 28-264 (1049)
198 2bnx_A Diaphanous protein homo 71.6 67 0.0023 30.1 14.5 183 96-284 7-212 (386)
199 3a6p_A Exportin-5; exportin-5, 71.2 1.2E+02 0.0042 33.0 18.7 211 107-351 25-278 (1204)
200 1x5b_A Signal transducing adap 70.2 13 0.00044 30.5 7.1 73 321-394 54-127 (163)
201 3ibv_A Exportin-T; karyopherin 70.1 1.2E+02 0.0041 32.4 18.8 202 94-315 41-272 (980)
202 3l9t_A Putative uncharacterize 65.3 15 0.00053 32.0 6.8 137 237-398 73-213 (240)
203 3zyq_A Hepatocyte growth facto 65.1 17 0.00056 31.6 7.1 74 320-394 46-120 (226)
204 2lri_C Autoimmune regulator; Z 63.9 5.8 0.0002 27.2 3.1 47 9-57 9-60 (66)
205 1upk_A MO25 protein; transfera 61.9 98 0.0034 28.4 15.6 187 108-308 91-285 (341)
206 2lbm_A Transcriptional regulat 61.3 3.5 0.00012 33.0 1.8 42 12-55 63-116 (142)
207 3gjx_A Exportin-1; transport, 60.8 1.8E+02 0.006 31.4 15.5 225 89-350 24-276 (1073)
208 3ldz_A STAM-1, signal transduc 58.8 21 0.00074 28.3 6.2 70 321-392 44-114 (140)
209 2jne_A Hypothetical protein YF 58.4 0.32 1.1E-05 35.9 -4.3 40 13-58 33-72 (101)
210 1m3v_A FLIN4, fusion of the LI 57.1 6 0.0002 30.6 2.5 49 12-61 32-83 (122)
211 1dvp_A HRS, hepatocyte growth 57.0 28 0.00095 29.9 7.1 71 321-392 44-115 (220)
212 1elk_A Target of MYB1; superhe 56.3 32 0.0011 27.8 7.0 72 321-392 55-130 (157)
213 1lsh_A Lipovitellin (LV-1N, LV 55.5 58 0.002 35.1 10.7 104 188-306 356-469 (1056)
214 1wil_A KIAA1045 protein; ring 54.2 13 0.00045 26.6 3.6 49 7-55 10-75 (89)
215 1juq_A ADP-ribosylation factor 53.6 38 0.0013 27.8 7.1 71 321-392 52-128 (171)
216 2x1g_F Cadmus; transport prote 53.5 36 0.0012 36.0 8.7 132 194-349 13-157 (971)
217 2eps_A POZ-, at HOOK-, and zin 52.0 30 0.001 21.6 5.0 39 10-59 10-53 (54)
218 3g2s_A C-terminal fragment of 51.7 33 0.0011 27.5 6.2 73 320-393 49-127 (149)
219 3ibv_A Exportin-T; karyopherin 51.4 2.5E+02 0.0085 29.9 22.5 217 105-351 18-262 (980)
220 2o35_A Hypothetical protein DU 51.3 6.2 0.00021 29.1 1.6 13 33-45 42-54 (105)
221 2jvx_A NF-kappa-B essential mo 51.2 4.3 0.00015 22.7 0.5 16 11-26 2-17 (28)
222 1z60_A TFIIH basal transcripti 51.1 8.5 0.00029 25.7 2.1 39 14-53 17-58 (59)
223 3fyb_A Protein of unknown func 50.9 6.4 0.00022 29.0 1.6 13 33-45 41-53 (104)
224 1lrv_A LRV, leucine-rich repea 50.1 1.6 5.6E-05 38.6 -2.1 60 328-388 154-219 (244)
225 3gjx_A Exportin-1; transport, 48.3 2.6E+02 0.0088 30.2 14.2 182 189-392 29-236 (1073)
226 1mhq_A ADP-ribosylation factor 48.3 43 0.0015 26.7 6.4 72 320-392 39-116 (148)
227 4gzn_C ZFP-57, zinc finger pro 48.0 11 0.00037 25.0 2.3 37 12-59 4-44 (60)
228 2jrp_A Putative cytoplasmic pr 47.9 0.89 3E-05 32.6 -3.3 39 13-57 3-41 (81)
229 2c6a_A Ubiquitin-protein ligas 46.7 6.9 0.00024 24.5 1.0 31 2-38 3-33 (46)
230 3uk3_C Zinc finger protein 217 46.6 14 0.00047 23.3 2.7 41 12-59 4-44 (57)
231 3qml_C Protein SLS1, nucleotid 46.6 1.7E+02 0.0057 26.5 10.9 135 159-305 42-188 (315)
232 3vth_A Hydrogenase maturation 45.7 8.3 0.00028 39.9 2.1 50 9-58 108-194 (761)
233 1lsh_A Lipovitellin (LV-1N, LV 45.7 3.1E+02 0.011 29.4 17.8 129 190-351 438-578 (1056)
234 2fiy_A Protein FDHE homolog; F 45.1 1.9 6.6E-05 39.5 -2.5 46 10-56 180-231 (309)
235 2xqn_T Testin, TESS; metal-bin 44.6 12 0.00041 28.8 2.5 46 11-59 29-75 (126)
236 2ct7_A Ring finger protein 31; 44.2 4.4 0.00015 29.3 -0.2 29 14-42 27-61 (86)
237 2lv2_A Insulinoma-associated p 43.9 20 0.00069 25.6 3.4 38 11-59 27-68 (85)
238 4g9i_A Hydrogenase maturation 43.0 8.5 0.00029 40.0 1.7 50 9-58 103-189 (772)
239 1bbo_A Human enhancer-binding 42.4 15 0.0005 23.1 2.3 36 13-59 2-41 (57)
240 6rxn_A Rubredoxin; electron tr 42.2 7.7 0.00026 24.5 0.7 13 8-20 26-38 (46)
241 1x6e_A Zinc finger protein 24; 42.0 16 0.00056 24.5 2.6 38 11-59 13-54 (72)
242 1e8j_A Rubredoxin; iron-sulfur 41.5 11 0.00039 24.3 1.5 14 7-20 31-44 (52)
243 1x5b_A Signal transducing adap 41.4 96 0.0033 25.1 7.6 70 189-261 53-124 (163)
244 1mhq_A ADP-ribosylation factor 41.3 1E+02 0.0034 24.5 7.6 70 189-261 39-115 (148)
245 2l5u_A Chromodomain-helicase-D 41.2 15 0.0005 24.5 2.1 45 9-55 8-57 (61)
246 2lce_A B-cell lymphoma 6 prote 41.2 25 0.00086 23.5 3.5 39 10-59 15-57 (74)
247 2epr_A POZ-, at HOOK-, and zin 40.7 34 0.0012 20.5 3.8 36 9-55 9-48 (48)
248 2adr_A ADR1; transcription reg 40.1 16 0.00056 23.2 2.3 37 12-59 2-42 (60)
249 2epq_A POZ-, at HOOK-, and zin 39.8 33 0.0011 20.2 3.6 14 11-24 9-22 (45)
250 1z2q_A LM5-1; membrane protein 39.6 19 0.00066 25.7 2.7 30 12-41 21-54 (84)
251 3ldz_A STAM-1, signal transduc 39.3 1E+02 0.0034 24.2 7.2 70 189-261 43-113 (140)
252 1weu_A Inhibitor of growth fam 38.9 20 0.00069 26.2 2.7 48 9-57 33-86 (91)
253 2l43_A N-teminal domain from h 38.8 6.3 0.00022 28.7 -0.1 54 8-61 21-80 (88)
254 2xjy_A Rhombotin-2; oncoprotei 38.7 20 0.00069 27.7 2.9 48 11-59 28-78 (131)
255 1joc_A EEA1, early endosomal a 38.4 11 0.00039 29.3 1.4 28 13-40 70-101 (125)
256 1wen_A Inhibitor of growth fam 38.3 27 0.00092 24.1 3.2 50 5-57 9-66 (71)
257 3ttc_A HYPF, transcriptional r 37.9 12 0.0004 38.1 1.7 49 9-57 14-99 (657)
258 1vfy_A Phosphatidylinositol-3- 36.9 19 0.00066 24.9 2.3 29 12-40 11-43 (73)
259 2kn9_A Rubredoxin; metalloprot 36.7 14 0.00048 26.4 1.5 14 7-20 55-68 (81)
260 4rxn_A Rubredoxin; electron tr 36.6 11 0.00036 24.7 0.7 13 8-20 32-44 (54)
261 2gmg_A Hypothetical protein PF 36.1 7.2 0.00025 29.3 -0.1 30 22-57 65-94 (105)
262 3gae_A Protein DOA1; UFD3, CDC 35.7 75 0.0026 27.9 6.5 103 246-352 103-220 (253)
263 3zyq_A Hepatocyte growth facto 35.7 99 0.0034 26.5 7.2 70 189-261 46-117 (226)
264 1rut_X Flinc4, fusion protein 34.9 11 0.00038 31.5 0.9 48 11-59 31-81 (188)
265 1x61_A Thyroid receptor intera 34.9 47 0.0016 22.3 4.1 32 13-44 34-66 (72)
266 3g2s_A C-terminal fragment of 34.8 1.5E+02 0.0051 23.6 7.6 70 189-261 49-125 (149)
267 2ee8_A Protein ODD-skipped-rel 34.1 70 0.0024 22.9 5.3 15 10-24 15-29 (106)
268 1juq_A ADP-ribosylation factor 34.0 1.3E+02 0.0044 24.6 7.3 70 189-261 51-127 (171)
269 2k16_A Transcription initiatio 33.9 9.3 0.00032 26.7 0.2 49 10-58 16-70 (75)
270 3vhs_A ATPase wrnip1; zinc fin 33.4 10 0.00035 20.3 0.2 12 13-24 7-18 (29)
271 1x5w_A Zinc finger protein 64, 33.3 25 0.00086 23.2 2.4 38 11-59 8-49 (70)
272 3qml_C Protein SLS1, nucleotid 32.5 2.8E+02 0.0097 25.0 10.9 107 98-215 73-187 (315)
273 1yk4_A Rubredoxin, RD; electro 32.4 14 0.00046 24.0 0.7 13 8-20 31-43 (52)
274 2v3b_B Rubredoxin 2, rubredoxi 32.3 13 0.00045 24.4 0.7 13 8-20 32-44 (55)
275 2jmo_A Parkin; IBR, E3 ligase, 32.3 5.1 0.00017 28.6 -1.5 31 12-42 25-68 (80)
276 2rgt_A Fusion of LIM/homeobox 32.0 45 0.0015 27.1 4.2 46 11-59 32-77 (169)
277 2cor_A Pinch protein; LIM doma 31.9 52 0.0018 22.8 4.0 41 11-60 14-54 (79)
278 2jtn_A LIM domain-binding prot 31.5 34 0.0011 28.3 3.3 45 12-59 87-131 (182)
279 2eq4_A Zinc finger protein 224 31.1 63 0.0021 18.8 3.9 15 11-25 11-25 (46)
280 2cot_A Zinc finger protein 435 30.9 33 0.0011 23.1 2.8 39 10-59 16-58 (77)
281 2eov_A Zinc finger protein 484 30.3 63 0.0021 18.8 3.8 14 12-25 12-25 (46)
282 1erd_A Pheromone ER-2; NMR {Eu 29.9 7.9 0.00027 22.2 -0.6 27 28-54 10-38 (40)
283 1dx8_A Rubredoxin; electron tr 29.6 16 0.00054 25.3 0.7 13 8-20 36-48 (70)
284 2yw8_A RUN and FYVE domain-con 29.6 23 0.00078 25.2 1.7 29 12-40 19-51 (82)
285 2cr8_A MDM4 protein; ZF-ranbp 29.4 20 0.00067 22.9 1.1 28 6-39 5-32 (53)
286 1y02_A CARP2, FYVE-ring finger 29.3 18 0.00061 28.0 1.1 44 11-55 18-65 (120)
287 1dvp_A HRS, hepatocyte growth 29.1 1.5E+02 0.0052 25.1 7.3 70 189-261 43-114 (220)
288 2gqj_A Zinc finger protein KIA 28.8 23 0.00077 25.6 1.6 42 11-59 23-66 (98)
289 3t7l_A Zinc finger FYVE domain 28.7 32 0.0011 24.9 2.4 30 12-41 20-53 (90)
290 1fp0_A KAP-1 corepressor; PHD 28.6 18 0.00061 26.3 0.9 45 10-56 23-72 (88)
291 2emk_A Zinc finger protein 28 28.3 73 0.0025 18.6 3.8 14 12-25 12-25 (46)
292 2ytm_A Zinc finger protein 28 28.2 75 0.0026 18.6 3.9 15 11-25 11-25 (46)
293 1zoq_C CREB-binding protein, i 28.0 56 0.0019 20.2 2.9 28 362-389 1-28 (47)
294 2ytn_A Zinc finger protein 347 28.0 64 0.0022 18.8 3.5 15 11-25 11-25 (46)
295 2ctu_A Zinc finger protein 483 27.9 13 0.00046 24.6 0.1 36 11-60 17-52 (73)
296 2epz_A Zinc finger protein 28 27.7 65 0.0022 18.8 3.5 15 11-25 11-25 (46)
297 2yt9_A Zinc finger-containing 27.4 34 0.0012 24.0 2.4 16 10-25 5-20 (95)
298 2eop_A Zinc finger protein 268 27.4 71 0.0024 18.6 3.6 15 11-25 11-25 (46)
299 2pv0_B DNA (cytosine-5)-methyl 27.3 40 0.0014 31.7 3.3 43 12-56 93-148 (386)
300 3l3f_X Protein DOA1, DOA1/UFD3 27.3 3.6E+02 0.012 24.9 9.8 131 111-263 179-327 (362)
301 2ely_A Zinc finger protein 224 27.2 62 0.0021 18.9 3.3 15 11-25 11-25 (46)
302 1llm_C Chimera of ZIF23-GCN4; 27.1 30 0.001 24.1 2.0 37 12-59 3-43 (88)
303 2d8v_A Zinc finger FYVE domain 27.1 45 0.0016 22.6 2.6 33 10-43 6-39 (67)
304 1wfk_A Zinc finger, FYVE domai 27.1 29 0.00098 25.1 1.8 30 11-40 8-41 (88)
305 2ytq_A Zinc finger protein 268 27.0 74 0.0025 18.6 3.7 15 11-25 11-25 (46)
306 2eoq_A Zinc finger protein 224 27.0 73 0.0025 18.5 3.6 13 12-24 12-24 (46)
307 2eml_A Zinc finger protein 28 26.9 60 0.002 19.0 3.2 15 11-25 11-25 (46)
308 2ytt_A Zinc finger protein 473 26.9 68 0.0023 18.7 3.4 15 11-25 11-25 (46)
309 2eoe_A Zinc finger protein 347 26.8 63 0.0022 18.8 3.3 15 11-25 11-25 (46)
310 2ebt_A Krueppel-like factor 5; 26.7 1.1E+02 0.0038 21.3 5.2 15 10-24 13-29 (100)
311 2ytr_A Zinc finger protein 347 26.4 70 0.0024 18.6 3.5 15 11-25 11-25 (46)
312 2ctd_A Zinc finger protein 512 26.4 33 0.0011 24.8 2.2 14 46-59 61-74 (96)
313 3pst_A Protein DOA1; protein d 26.4 3.5E+02 0.012 25.7 9.6 106 107-216 274-388 (425)
314 2ep2_A Zinc finger protein 484 26.4 65 0.0022 18.8 3.3 15 11-25 11-25 (46)
315 3o36_A Transcription intermedi 26.0 17 0.00057 30.3 0.4 46 11-58 3-53 (184)
316 2wbt_A B-129; zinc finger; 2.7 26.0 55 0.0019 24.6 3.5 13 46-58 99-111 (129)
317 3gae_A Protein DOA1; UFD3, CDC 26.0 3.2E+02 0.011 23.6 11.0 107 107-217 102-217 (253)
318 2drp_A Protein (tramtrack DNA- 25.8 32 0.0011 22.3 1.8 38 11-59 9-52 (66)
319 1x4u_A Zinc finger, FYVE domai 25.5 26 0.00089 25.0 1.4 28 13-40 15-46 (84)
320 2d8x_A Protein pinch; LIM doma 25.4 52 0.0018 21.9 2.9 37 14-59 7-43 (70)
321 1s24_A Rubredoxin 2; electron 25.1 21 0.00073 25.8 0.8 13 8-20 64-76 (87)
322 2elz_A Zinc finger protein 224 24.9 80 0.0027 18.4 3.5 15 11-25 11-25 (46)
323 2ct1_A Transcriptional repress 24.8 41 0.0014 22.6 2.3 38 11-59 14-57 (77)
324 2em8_A Zinc finger protein 224 24.8 71 0.0024 18.7 3.2 15 11-25 11-25 (46)
325 2em5_A ZFP-95, zinc finger pro 24.7 61 0.0021 18.9 2.9 15 11-25 11-25 (46)
326 2dlq_A GLI-kruppel family memb 24.6 77 0.0026 23.3 4.1 15 11-25 6-20 (124)
327 1wfh_A Zinc finger (AN1-like) 24.5 75 0.0026 21.4 3.3 28 10-37 13-41 (64)
328 3rru_A TOM1L1 protein; structu 24.4 25 0.00087 28.3 1.2 73 320-392 54-130 (152)
329 2em0_A Zinc finger protein 224 24.4 73 0.0025 18.5 3.3 15 11-25 11-25 (46)
330 3ql9_A Transcriptional regulat 24.4 48 0.0016 25.9 2.8 57 12-75 57-123 (129)
331 2cup_A Skeletal muscle LIM-pro 24.3 20 0.00069 26.2 0.6 46 11-59 32-78 (101)
332 2emm_A ZFP-95, zinc finger pro 24.3 68 0.0023 18.6 3.1 15 11-25 11-25 (46)
333 4atg_A TAF6; transcription, TF 24.2 1.7E+02 0.0057 24.6 6.3 144 211-373 28-179 (196)
334 3mpx_A FYVE, rhogef and PH dom 24.2 16 0.00055 34.8 0.0 32 12-43 375-410 (434)
335 2ytd_A Zinc finger protein 473 24.0 69 0.0024 18.6 3.1 15 11-25 11-25 (46)
336 1iml_A CRIP, cysteine rich int 24.0 54 0.0018 22.3 2.8 44 11-57 26-71 (76)
337 2emp_A Zinc finger protein 347 23.9 75 0.0026 18.5 3.2 15 11-25 11-25 (46)
338 2ytk_A Zinc finger protein 347 23.7 71 0.0024 18.6 3.1 15 11-25 11-25 (46)
339 2emy_A Zinc finger protein 268 23.7 71 0.0024 18.6 3.1 15 11-25 11-25 (46)
340 1mm2_A MI2-beta; PHD, zinc fin 23.7 16 0.00054 24.4 -0.1 44 11-56 8-56 (61)
341 1zbd_B Rabphilin-3A; G protein 23.6 23 0.00078 27.9 0.8 28 11-38 54-86 (134)
342 2ene_A Zinc finger protein 347 23.5 69 0.0024 18.7 3.0 14 11-24 11-24 (46)
343 2eme_A Zinc finger protein 473 23.5 75 0.0026 18.4 3.2 15 11-25 11-25 (46)
344 2epw_A Zinc finger protein 268 23.4 77 0.0026 18.4 3.2 14 12-25 12-25 (46)
345 2el4_A Zinc finger protein 268 23.2 66 0.0023 18.7 2.8 15 11-25 11-25 (46)
346 2ema_A Zinc finger protein 347 23.2 69 0.0024 18.6 3.0 14 11-24 11-24 (46)
347 2emh_A Zinc finger protein 484 23.1 72 0.0025 18.5 3.0 15 11-25 11-25 (46)
348 2d9h_A Zinc finger protein 692 23.0 33 0.0011 23.2 1.5 42 11-59 6-50 (78)
349 2el6_A Zinc finger protein 268 22.9 80 0.0027 18.4 3.2 15 11-25 11-25 (46)
350 2ysp_A Zinc finger protein 224 22.9 64 0.0022 18.8 2.7 15 11-25 11-25 (46)
351 2dmd_A Zinc finger protein 64, 22.8 51 0.0017 23.1 2.6 14 11-24 7-20 (96)
352 2ffw_A Midline-1; B-BOX, ring 22.5 52 0.0018 23.0 2.4 31 11-41 29-62 (78)
353 1f62_A Transcription factor WS 22.5 28 0.00097 22.0 0.9 42 14-55 2-49 (51)
354 2yu8_A Zinc finger protein 347 22.4 64 0.0022 18.8 2.7 15 11-25 11-25 (46)
355 1wd2_A Ariadne-1 protein homol 22.4 8 0.00027 25.9 -1.8 32 13-44 7-46 (60)
356 2l4z_A DNA endonuclease RBBP8, 21.9 48 0.0017 25.4 2.4 38 12-58 61-99 (123)
357 2eq0_A Zinc finger protein 347 21.8 76 0.0026 18.5 2.9 14 11-24 11-24 (46)
358 2eoo_A ZFP-95, zinc finger pro 21.7 83 0.0028 18.3 3.1 15 11-25 11-25 (46)
359 2enc_A Zinc finger protein 224 21.6 85 0.0029 18.2 3.1 15 11-25 11-25 (46)
360 2em7_A Zinc finger protein 224 21.5 74 0.0025 18.5 2.8 15 11-25 11-25 (46)
361 2epx_A Zinc finger protein 28 21.4 1E+02 0.0034 17.9 3.5 14 12-25 12-25 (47)
362 1vd4_A Transcription initiatio 21.4 3.5 0.00012 27.3 -3.9 38 11-60 13-52 (62)
363 2ep0_A Zinc finger protein 28 21.1 83 0.0029 18.3 3.0 15 11-25 11-25 (46)
364 2ytj_A Zinc finger protein 484 21.1 88 0.003 18.1 3.1 15 11-25 11-25 (46)
365 2dar_A PDZ and LIM domain prot 21.0 60 0.0021 23.0 2.6 39 13-60 26-64 (90)
366 2cur_A Skeletal muscle LIM-pro 21.0 79 0.0027 20.9 3.1 33 12-44 31-64 (69)
367 1f2i_G Fusion of N-terminal 17 20.9 58 0.002 21.4 2.4 38 11-59 18-61 (73)
368 3l3f_X Protein DOA1, DOA1/UFD3 20.8 3.9E+02 0.013 24.7 8.7 106 107-216 211-325 (362)
369 1wig_A KIAA1808 protein; LIM d 20.6 49 0.0017 22.5 2.0 25 14-38 7-31 (73)
370 2em9_A Zinc finger protein 224 20.6 79 0.0027 18.3 2.8 15 11-25 11-25 (46)
371 2kmk_A Zinc finger protein GFI 20.5 50 0.0017 22.2 2.0 12 13-24 2-13 (82)
372 2zet_C Melanophilin; complex, 20.4 40 0.0014 27.2 1.6 29 11-39 67-100 (153)
373 2en6_A Zinc finger protein 268 20.3 82 0.0028 18.3 2.8 15 11-25 11-25 (46)
374 3u5n_A E3 ubiquitin-protein li 20.3 14 0.00047 31.5 -1.3 45 12-58 7-56 (207)
375 1wfe_A Riken cDNA 2310008M20 p 20.2 71 0.0024 23.0 2.8 29 9-37 22-53 (86)
376 2emx_A Zinc finger protein 268 20.2 98 0.0034 17.7 3.2 14 12-25 10-23 (44)
377 2emf_A Zinc finger protein 484 20.1 82 0.0028 18.3 2.8 14 12-25 12-25 (46)
378 2ku3_A Bromodomain-containing 20.1 25 0.00087 24.3 0.3 47 9-55 13-65 (71)
379 2en8_A Zinc finger protein 224 20.0 86 0.0029 18.1 2.9 15 11-25 11-25 (46)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3e-34 Score=275.65 Aligned_cols=281 Identities=12% Similarity=0.117 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc---cchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES---KFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~---~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
.+.+..|++.|.+++.. +++|+.|++.|++++|+.+|.+.... ..+..++.++++|++ +|.+|+.++++.+..+.
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~-aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM-ALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-HHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 44566899999999877 67999999999999999999642100 000124779999999 99999988776666663
Q ss_pred -cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcC
Q 015728 186 -EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCS 262 (401)
Q Consensus 186 -~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~ 262 (401)
..|+||.|+.+|++++.++++.|+++|.+| +..+ ++++|..|.+. |+||+|+.+| + ++.++++.|+.+|+||+.
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL-s~~~-~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNL-SWRA-DVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH-HTTC-CHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHH-hccC-CHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 456699999999999999999999999999 7641 13789999886 8899999986 4 566799999999999998
Q ss_pred -CCchhHHHH-hcCcHHHHHHHHHhhccccc---hHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcCC
Q 015728 263 -TETNRKTLV-QEGAINGLIAYISNALTRER---SLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVSD 333 (401)
Q Consensus 263 -~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~~ 333 (401)
+++|+..++ +.|+||+|+++|.. ..+. ++++.|+++|.+|+. +++++..+. +.|+|+.|++ ++++++
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~--~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~-lL~~~~ 276 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTY--RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQ-HLKSHS 276 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTC--CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHH-HTTCSC
T ss_pred cChhhhHHHHHhcCcHHHHHHHhcc--CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHH-HHcCCC
Confidence 778999998 79999999999984 2222 589999999999995 788888885 8999999999 677888
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
...++.|+++|++|+..+++.++.+++.|+|+.|+.+|+++ ++..|+.|+++|+.|....|+..+
T Consensus 277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 89999999999999987788899999999999999999988 999999999999999986665443
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=278.92 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc---cchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc-cC
Q 015728 112 KLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES---KFSQVYVQFVEESLSCVQKLLLVGETESLNLLN-EE 187 (401)
Q Consensus 112 ~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~---~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~-~~ 187 (401)
+.+|++.|.+++. ++.+|+.|.+.|++++|+.+|...... ..+..++.++++|++ +|.+|+.+++..+..+. ..
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~-aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM-ALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH-HHHHHhCCCcccHHHHHHcC
Confidence 3489999999955 488999999999999999999531000 000124679999999 99999988876666653 45
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcC-CC
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCS-TE 264 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~-~~ 264 (401)
|+||.|+.+|++++.++++.|+++|.+| +..+ ++++|..|.+. |+|++|+.+| + ++..+++.|+.+|+||+. ++
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nL-s~~~-~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNL-SWRA-DVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHH-TSSC-CHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCC-CHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 6699999999999999999999999999 7641 13789999886 8899999986 4 456799999999999998 77
Q ss_pred chhHHHH-hcCcHHHHHHHHHhhccccc---hHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcCChhH
Q 015728 265 TNRKTLV-QEGAINGLIAYISNALTRER---SLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVSDHEG 336 (401)
Q Consensus 265 ~n~~~iv-~~G~v~~Lv~lL~~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~ 336 (401)
+|+..++ +.|+||+|+++|.. ..+. ++++.|+++|.+|+. +++++..+. +.|+|+.|++ +++.++..+
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~--~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~-LL~~~~~~v 395 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTY--RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQ-HLKSHSLTI 395 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTC--CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHH-HSSCSCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcC--CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHH-HHcCCChHH
Confidence 8999998 79999999999984 2222 489999999999995 788888886 8899999999 678888899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 337 SENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
++.|+++|++|+..+++.+..+++.|+|+.|+.+|+++ ++..++.|+++|+.|..+.|+..
T Consensus 396 ~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHhhh
Confidence 99999999999987788899999999999999999988 99999999999999998666543
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.98 E-value=4e-31 Score=263.67 Aligned_cols=279 Identities=17% Similarity=0.148 Sum_probs=232.4
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
++.+++.|++. +++.|..|+..|++++..++.+|..+++.|+||.||.+|++++ +++++.|++ +|.+|+
T Consensus 4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~--------~~~~~~A~~-aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--------QNVQQAAAG-ALRNLV 72 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--------HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence 56677778754 5789999999999999988888989999999999999999876 459999999 999999
Q ss_pred CCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--------C
Q 015728 175 VGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--------H 245 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--------~ 245 (401)
.++++.+..+.+.|+||+|+.+|+ +++.++++.|+++|.+| +..+ ++|..|+. |++|+|+.+|. +
T Consensus 73 ~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL-a~~~---~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~ 146 (457)
T 1xm9_A 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTD---ELKEELIA--DALPVLADRVIIPFSGWCDG 146 (457)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTSS---STHHHHHH--HHHHHHHHHTTHHHHTCC--
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH-hcCH---HhHHHHHh--ccHHHHHHHHhccccccccC
Confidence 876677777779999999999999 88999999999999999 7765 88998875 88999999992 1
Q ss_pred ---------CchhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCCH----
Q 015728 246 ---------NSEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQLLAIE---- 308 (401)
Q Consensus 246 ---------~~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~---- 308 (401)
+..+.+.|+++|+||+.+++++..+++. |+||+|+++|.+. +..+..++++++.+|.+|+...
T Consensus 147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~ 226 (457)
T 1xm9_A 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV 226 (457)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS
T ss_pred ccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC
Confidence 2346669999999999888899999998 9999999999841 1145678999999999997321
Q ss_pred -----------------------------------------------hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728 309 -----------------------------------------------NSKDALINNPNGVYALVKMVFRVSDHEGSENAI 341 (401)
Q Consensus 309 -----------------------------------------------~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~ 341 (401)
++...+ .+.|+++.|+.+|...+++..++.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a~ 305 (457)
T 1xm9_A 227 PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEACA 305 (457)
T ss_dssp CCHHHHHHHTC----------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHHH
Confidence 111223 36788999999666666789999999
Q ss_pred HHHHHHhcCCH----HH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 342 NSLMMICCDSL----QA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 342 ~~L~~l~~~~~----~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
++|++||.++. .. +..+.+.|+++.|+.+|+++ ++.+++.|+|+|+.++.
T Consensus 306 ~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence 99999997643 22 32334699999999999998 99999999999999987
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=258.05 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=240.5
Q ss_pred hhHHHHHHhhhhhh----------cChHHHHHHHHHHHHHHhcCchhhhHHHhcCCh----------HHHHHHhccCCcc
Q 015728 93 DSLSTLKHSLQSHE----------ATLETKLQIVQKIHVVLRESPPASNCLIQLGFL----------PLLLKQLFGKAES 152 (401)
Q Consensus 93 ~~~~~l~~~l~~~~----------~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~s~~~~ 152 (401)
..++.|+++|+..+ ++++.|.+|++.|.+++...++.....++.|++ +.+++++.+....
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 56778889888542 457999999999999999999888888888888 7778888765311
Q ss_pred cchhhhHHHHH-------HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc-----------CCHHHHHHHHHHHHH
Q 015728 153 KFSQVYVQFVE-------ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH-----------GSCSIKKRLCHLVEV 214 (401)
Q Consensus 153 ~~~~~~~~~~~-------~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~ 214 (401)
. +.....+.+ .|++ +|.+++.+ +++|..+.+.|++++|+.+|.. .+..++.+|+++|.+
T Consensus 150 ~-~~~~~~~~~~~~~~~~qAv~-aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 150 M-DQDKNPMPAPVEHQICPAVC-VLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp S-CCCSCC--CCCTTTTHHHHH-HHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred c-ccccCCccchhhHHHHHHHH-HHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 0 000000333 8999 99999866 5667777799999999999952 246789999999999
Q ss_pred HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCC--CchhHHHHhcCcHHHHHHHHHhhccccc
Q 015728 215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCST--ETNRKTLVQEGAINGLIAYISNALTRER 291 (401)
Q Consensus 215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~ 291 (401)
| +..+ +.++..+....|+||+|+.+|+ ++.+++..|+++|+||+.. ++||..+++.|+||+|+++|.. +++.
T Consensus 227 L-a~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~ 301 (458)
T 3nmz_A 227 L-TFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKE 301 (458)
T ss_dssp H-HTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSH
T ss_pred H-hCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCH
Confidence 9 7654 2578777655688999999994 6778999999999999974 5689999999999999998753 5677
Q ss_pred hHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCCh----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCc
Q 015728 292 SLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDH----EGSENAINSLMMICC---DSLQAREEAICAGV 363 (401)
Q Consensus 292 ~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~ 363 (401)
.+++.|+.+|++|+. +++++..++...|+|+.|++ +++.++. .+++.|+++|++|+. .+++.++.+++.|+
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~-LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVG-TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH-HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 899999999999998 78899998768999999999 4555433 389999999999997 56788999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 364 LTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
++.|+.+|+++ +..+++.|+++|..|+...++..
T Consensus 381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~ 414 (458)
T 3nmz_A 381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQ 414 (458)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999988 89999999999999984345543
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2e-30 Score=261.95 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=233.0
Q ss_pred CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728 90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169 (401)
Q Consensus 90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~ 169 (401)
.....+..++++|.+ ++.+.|.+|+..|++++..++.+|..|++.|+||+||.+|++++ .+++++|++ +
T Consensus 45 ~~~~~i~~LV~~L~s--~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~--------~~vq~~Aa~-A 113 (584)
T 3l6x_A 45 WRQPELPEVIAMLGF--RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK--------KEVHLGACG-A 113 (584)
T ss_dssp CCCCCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS--------HHHHHHHHH-H
T ss_pred cccccHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC--------HHHHHHHHH-H
Confidence 334567788888874 46789999999999999999999999999999999999999876 459999999 9
Q ss_pred HHhhcCC-chhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc---
Q 015728 170 QKLLLVG-ETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--- 244 (401)
Q Consensus 170 L~~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--- 244 (401)
|.+|+.+ +++++..|.+.|+|++|+.+|++ ++.+++++|+.+|++| |..+ ++|..|+. |+||+|+.++.
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL-S~~~---~~k~~I~~--~alp~Lv~LL~~p~ 187 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHD---SIKMEIVD--HALHALTDEVIIPH 187 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH-TTSG---GGHHHHHH--HTHHHHHHHTHHHH
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCc---hhhHHHHh--ccHHHHHHHHhccc
Confidence 9999975 45667777799999999999997 5788999999999999 8765 89999984 56999999871
Q ss_pred ----------------CCchhHHHHHHHHHHhcCCCc-hhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHH
Q 015728 245 ----------------HNSEASDAGVRAFSALCSTET-NRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQ 303 (401)
Q Consensus 245 ----------------~~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~ 303 (401)
.+..++++|+++|+||+.+.+ +|..|++. |+|++|+++|.+. ...+...+++|+++|+|
T Consensus 188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 124699999999999998765 59999984 6788999999841 12466789999999999
Q ss_pred HhCCHhhH--------------------------HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC----HH
Q 015728 304 LLAIENSK--------------------------DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS----LQ 353 (401)
Q Consensus 304 La~~~~~~--------------------------~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~----~~ 353 (401)
|+...+.. ..+. +.++|+.|+.++...+++.++++|+++|++||..+ ..
T Consensus 268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~ 346 (584)
T 3l6x_A 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346 (584)
T ss_dssp HHTTHHHHSTTCCC--------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred hhccccccccchhhhhhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHH
Confidence 99763211 1111 34567788995445567899999999999999764 23
Q ss_pred HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 354 AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 354 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.+..+.++|+++.|+.||.++ ++.+++.|.++|+.|+.
T Consensus 347 ~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 347 IRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 454556789999999999988 99999999999999987
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=9.7e-30 Score=257.11 Aligned_cols=287 Identities=11% Similarity=0.191 Sum_probs=244.3
Q ss_pred CCCCCC----hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728 86 PNYLAT----IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF 161 (401)
Q Consensus 86 ~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~ 161 (401)
..||++ ..+++.|+++|+.. ++++.|.+|++.|.+++..++.+++.+++.|+||.|+.+|.+++ .++
T Consensus 89 ~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~--------~~v 159 (510)
T 3ul1_B 89 KQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--------AHI 159 (510)
T ss_dssp SCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHH
T ss_pred CCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHH
Confidence 445654 37788999988754 45789999999999999999999999999999999999999876 459
Q ss_pred HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCC-----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728 162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGS-----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236 (401)
Q Consensus 162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i 236 (401)
++.|++ +|++|+.+.++.+..+.+.|++++|+.+|.+.+ ...+..++++|.++ +... .....+....|++
T Consensus 160 ~e~A~~-aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-~~~~---~~~~~~~~~~~~l 234 (510)
T 3ul1_B 160 SEQAVW-ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNK---NPAPPLDAVEQIL 234 (510)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH-HCCC---SSCCCHHHHHHHH
T ss_pred HHHHHH-HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH-hhcc---cchhHHHHHHhHH
Confidence 999999 999999888888888889999999999998654 34678899999999 6544 2333333335899
Q ss_pred HHHHHHc-cCCchhHHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHH
Q 015728 237 REIISLV-HHNSEASDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDA 313 (401)
Q Consensus 237 ~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~ 313 (401)
|.|+.+| +++.+++..|+++|.+|+..+.++ ..+++.|++|.|+++|. +.+..++..++.+|.+++...+ .+..
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc---CCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 9999999 466779999999999999876654 55678999999999999 6788999999999999987654 4555
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
++ +.|+++.|+. ++++++..+++.|+++|.+|+.++++.+..+.+.|+++.|+.+++++ +..+|+.|+++|..+..
T Consensus 312 i~-~~g~l~~L~~-LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 312 VI-DAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HH-HTTGGGGCC--CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred Hh-hccchHHHHH-HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 54 8899999999 67888889999999999999999888898999999999999999988 99999999999999876
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=3e-29 Score=261.35 Aligned_cols=285 Identities=14% Similarity=0.134 Sum_probs=239.4
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-----------------------------hh---hHHHhcCChH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-----------------------------AS---NCLIQLGFLP 140 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~r---~~i~~~G~i~ 140 (401)
..+..|+++|++ ++...+..|+..|.|++...+. ++ +.++++|+||
T Consensus 421 g~Ip~LV~LL~s--~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 421 ASIHALMDLARG--GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp HHHHHHHHHHHT--TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHhCC--CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 556677787874 3567999999999999986531 23 6788999999
Q ss_pred HHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 015728 141 LLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSH 220 (401)
Q Consensus 141 ~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~ 220 (401)
.|+.+|++++ +.++++|+| +|.||+.+ ++.+..+.+.|++|+|+.+|++++...|+.|+++|.+| +...
T Consensus 499 ~LV~LL~s~s--------~~vqe~Aa~-aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL-~~~~ 567 (810)
T 3now_A 499 ALCALAKTES--------HNSQELIAR-VLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI-GITI 567 (810)
T ss_dssp HHHHHHTCCC--------HHHHHHHHH-HHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH-HHHS
T ss_pred HHHHHHcCCC--------HHHHHHHHH-HHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH-hcCC
Confidence 9999999877 459999999 99999965 45677777999999999999999999999999999999 5543
Q ss_pred chhhhhhhhcc--chHHHHHHHHHccCC-ch-hHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHH
Q 015728 221 ETKELCCKLGK--DDRLLREIISLVHHN-SE-ASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAA 295 (401)
Q Consensus 221 ~~~~~~~~i~~--~~g~i~~Lv~lL~~~-~~-~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~ 295 (401)
+....+.. ..|+||+|+.+|+.+ .. .+..|+++|.||+.. ++++..++++|++|.|+.+|. +++..+++
T Consensus 568 ---~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~Vq~ 641 (810)
T 3now_A 568 ---NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYLTR 641 (810)
T ss_dssp ---CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTHHH
T ss_pred ---ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHH
Confidence 22222211 137899999999643 33 456899999999976 578999999999999999999 67889999
Q ss_pred HHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhcC
Q 015728 296 IAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC-AGVLTQLLLLLQSQ 374 (401)
Q Consensus 296 ~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~ 374 (401)
.|+++|++|+.+++.+..++...|+++.|+. +++..+...++.|+++|++|+.+++...+.+++ .|+++.|+.|++++
T Consensus 642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~-LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL-LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHH-GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCChHHHHHHHhccCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999999999999998744799999999 678888899999999999999866677778888 99999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 375 CSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 375 ~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+...|+.|.|+|..+..+.+|..
T Consensus 721 -d~~vq~~A~~aL~NL~~~s~e~~ 743 (810)
T 3now_A 721 -SPAVQHRGIVIILNMINAGEEIA 743 (810)
T ss_dssp -SHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999987555543
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=4.3e-29 Score=253.55 Aligned_cols=287 Identities=11% Similarity=0.193 Sum_probs=244.7
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
..++..|+++|... ++++.|.+|++.|.+++..++.++..+++.|+||.|+.+|.+++ .++++.|++ +|.
T Consensus 118 ~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~--------~~v~e~A~~-aL~ 187 (529)
T 3tpo_A 118 AGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--------AHISEQAVW-ALG 187 (529)
T ss_dssp TTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHH
Confidence 47888999988654 45889999999999999999999999999999999999999887 459999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcCC-----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHGS-----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH 245 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~ 245 (401)
+|+.++++.+..+.+.|++++|+.+|..++ ...+..++++|.++ +... .....+....|++|.|+.+| ++
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-~~~~---~~~~~~~~~~~~lp~L~~LL~~~ 263 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNK---NPAPPLDAVEQILPTLVRLLHHN 263 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH-HCCC---TTCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH-Hhcc---cchhhHHHHhhHHHHHHHHhcCC
Confidence 999888788888889999999999997654 34678899999999 6554 33333333358999999999 56
Q ss_pred CchhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHH
Q 015728 246 NSEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYA 323 (401)
Q Consensus 246 ~~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~ 323 (401)
+.+++..|+++|.+|+..+++ ...+++.|++|.|+++|. +.+..++..|+.+|.+++...+ .+..++ +.|+++.
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~ 339 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAV 339 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGG
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHH
Confidence 777999999999999976665 555678999999999999 6788999999999999997654 555554 8899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhh
Q 015728 324 LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEEL 398 (401)
Q Consensus 324 Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~ 398 (401)
|+. +++++++.+++.|+++|.+|+.++++.+..+++.|+++.|+.+++++ +..+|+.|+|+|..+... .+|..
T Consensus 340 L~~-LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~ 413 (529)
T 3tpo_A 340 FPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQI 413 (529)
T ss_dssp HHH-HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999 67888889999999999999999888888999999999999999998 899999999999988763 34433
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2e-29 Score=254.79 Aligned_cols=284 Identities=16% Similarity=0.188 Sum_probs=240.2
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
+.-+++.|. +++.+.|..|+..+|++.+... ...+.++++|+||.||.+|++.+. +++|.+|+| +|.||
T Consensus 59 i~~~v~~l~--s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-------~~lq~~Aa~-aL~ni 128 (510)
T 3ul1_B 59 VEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQFESAW-ALTNI 128 (510)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-------HHHHHHHHH-HHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-------HHHHHHHHH-HHHHH
Confidence 344444454 3578899999999999886543 246789999999999999976553 569999999 99999
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC-----c
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN-----S 247 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~-----~ 247 (401)
+.++++.+..++++|+||.|+.+|++++.++++.|+++|.+| +.++ ++++..+... |++++|+.+|. .+ .
T Consensus 129 as~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nL-a~d~--~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-AGDG--SAFRDLVIKH-GAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHHTCSSCGGGSCH
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHc-CChHHHHHHHHhccchhhhH
Confidence 888777777777999999999999999999999999999999 7765 3778888775 88999999994 22 2
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHH
Q 015728 248 EASDAGVRAFSALCSTETNRKTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVK 326 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~ 326 (401)
...+.++++|.+++.+..+...+. ..|++|.|+++|. +.+.+++..|+++|.+|+..+.++..++.+.|+++.|++
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 281 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence 368899999999998776655554 4789999999999 688899999999999999887777666669999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
++++++..++..++++|.+|+..++..+..+++.|+++.|+.+|+++ ++..|+.|+|+|..+....++.
T Consensus 282 -lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~ 350 (510)
T 3ul1_B 282 -LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ 350 (510)
T ss_dssp -HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHH
T ss_pred -hhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHH
Confidence 67788889999999999999999888888999999999999999887 8999999999999998644443
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=4e-29 Score=240.00 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=207.3
Q ss_pred hhHHHHHHhhhhh---------hcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHH
Q 015728 93 DSLSTLKHSLQSH---------EATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFV 162 (401)
Q Consensus 93 ~~~~~l~~~l~~~---------~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~ 162 (401)
.++..|..+|... ..+++.|++|++.|++++..++.+|..+.. .|+||.||.+|++++ ++++
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~--------~~v~ 144 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES--------EDLQ 144 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSC--------HHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCC--------HHHH
Confidence 5677777777532 134678999999999999999889998876 466999999999876 4599
Q ss_pred HHHHHHHHHhhcCC-chhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728 163 EESLSCVQKLLLVG-ETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240 (401)
Q Consensus 163 ~~a~~~~L~~l~~~-~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv 240 (401)
+.|++ +|.+|+.. +++++..+.+.|+|++|+++| ++++.+.++.|+.+|++| +... ++++..|+...|+|++|+
T Consensus 145 ~~A~~-aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~--~~nk~~i~~~~Gai~~Lv 220 (354)
T 3nmw_A 145 QVIAS-VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-SAHC--TENKADICAVDGALAFLV 220 (354)
T ss_dssp HHHHH-HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHSTTHHHHHH
T ss_pred HHHHH-HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH-HccC--hhhhHHHHHhcCcHHHHH
Confidence 99999 99999975 455677777999999999975 667889999999999999 7633 278888883359999999
Q ss_pred HHcc-CCc----hhHHHHHHHHHHhcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhh
Q 015728 241 SLVH-HNS----EASDAGVRAFSALCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENS 310 (401)
Q Consensus 241 ~lL~-~~~----~~~~~a~~aL~~Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~ 310 (401)
.+|+ ++. ++++.|+++|+||+. +++++..+++.|+||+|+++|. +++..+++.|+++|.+|+. ++++
T Consensus 221 ~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 221 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---SHSLTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp HHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---CCChHHHHHHHHHHHHHhCCCHHH
Confidence 9994 332 489999999999995 8889999999999999999999 6788899999999999994 6888
Q ss_pred HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH
Q 015728 311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ 353 (401)
Q Consensus 311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 353 (401)
+..++ +.|+|+.|++ ++++++..+++.|+.+|.+|+.+.++
T Consensus 298 ~~~i~-~~G~i~~Lv~-LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 298 QEALW-DMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHH-HTTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHH-HCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 88886 8899999999 67888889999999999999988653
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.9e-28 Score=247.40 Aligned_cols=285 Identities=16% Similarity=0.195 Sum_probs=241.5
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
.+..+++.+. +++.+.|..|+..+|++.+... ...+.+++.|+||.||.+|...+. ++++.+|+| +|.+
T Consensus 77 ~l~~lv~~l~--s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-------~~~q~~Aa~-aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQFESAW-ALTN 146 (529)
T ss_dssp CHHHHHHHHT--SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-------HHHHHHHHH-HHHH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-------HHHHHHHHH-HHHH
Confidence 3444544444 3578899999999999875543 357788999999999999976553 679999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC-----
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN----- 246 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~----- 246 (401)
|+.++++....+++.|+||.|+.+|.+++.++++.|+++|.+| +.++ ++++..+... |++++|+.+|. .+
T Consensus 147 ia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nL-a~~~--~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~ 222 (529)
T 3tpo_A 147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-AGAG--SAFRDLVIKH-GAIDPLLALLAVPDLSTLA 222 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHTTCSSCGGGSC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-hccC--HHHHHHHHHc-CCcHHHHHHHhccchhHhH
Confidence 9988877766777999999999999999999999999999999 7765 3888888876 88999999994 22
Q ss_pred chhHHHHHHHHHHhcCCCchhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728 247 SEASDAGVRAFSALCSTETNRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV 325 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv 325 (401)
....+.++++|.+++.+..+...+ ...|++|.|+++|. +++.+++..|+++|.+|+..++.+..++.+.|+++.|+
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv 299 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 299 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH
Confidence 236889999999999877665554 44789999999999 68889999999999999988777766656999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
+ ++++++..++..|+++|.+|+.+++..+..+++.|+++.|+.+|+++ ++..|+.|+|+|..+....++.
T Consensus 300 ~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~ 369 (529)
T 3tpo_A 300 K-LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ 369 (529)
T ss_dssp H-HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHH
T ss_pred H-HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHH
Confidence 9 67788889999999999999999888888999999999999999887 8999999999999998755443
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.3e-28 Score=245.57 Aligned_cols=277 Identities=10% Similarity=0.054 Sum_probs=226.3
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhc-cCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLF-GKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
..+..|+++|++ ++++.|..|++.|++++..++.+|..|+++|+||+|+.+|+ +++ +++++.|++ +|+
T Consensus 44 g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~--------~~~~~~a~~-aL~ 112 (457)
T 1xm9_A 44 GGICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN--------AEIQKQLTG-LLW 112 (457)
T ss_dssp THHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC--------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC--------HHHHHHHHH-HHH
Confidence 567888888874 56789999999999999998999999999999999999998 655 569999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhh--------cC--------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFE--------HG--------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL 235 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~--------~~--------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~ 235 (401)
+|+.++ +.+..+.+ |+||+|+.+|. ++ +.+++.+|+++|.+| +..+ +++..|.+..|+
T Consensus 113 nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL-s~~~---~~~~~i~~~~g~ 186 (457)
T 1xm9_A 113 NLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-SSAD---AGRQTMRNYSGL 186 (457)
T ss_dssp HHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH-TTSH---HHHHHHTTSTTH
T ss_pred HHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH-ccCH---HHHHHHHHcCCC
Confidence 999874 45555557 99999999993 33 334555999999999 7654 888888875488
Q ss_pred HHHHHHHccC-------C--------------------------------------------------------------
Q 015728 236 LREIISLVHH-------N-------------------------------------------------------------- 246 (401)
Q Consensus 236 i~~Lv~lL~~-------~-------------------------------------------------------------- 246 (401)
+++|+.+|+. +
T Consensus 187 i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (457)
T 1xm9_A 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266 (457)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------C
T ss_pred HHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCc
Confidence 8999887731 1
Q ss_pred -------------------------------chhHHHHHHHHHHhcCCCch------hHHHHhcCcHHHHHHHHHhhccc
Q 015728 247 -------------------------------SEASDAGVRAFSALCSTETN------RKTLVQEGAINGLIAYISNALTR 289 (401)
Q Consensus 247 -------------------------------~~~~~~a~~aL~~Ls~~~~n------~~~iv~~G~v~~Lv~lL~~~~~~ 289 (401)
+..++.|+++|.||+..... +..+.+.|++|+|+++|. ++
T Consensus 267 ~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~---~~ 343 (457)
T 1xm9_A 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ---SG 343 (457)
T ss_dssp CCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT---CS
T ss_pred cccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh---CC
Confidence 22455678999999865432 223346899999999999 67
Q ss_pred cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCCh------hHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728 290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDH------EGSENAINSLMMICCDSLQAREEAICAGV 363 (401)
Q Consensus 290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 363 (401)
+.+++..|+++|.+|+.++.++..+. .|+|++|++ ++..+++ ++...++.+|.++..++++....+.+.|+
T Consensus 344 ~~~v~~~A~~aL~nls~~~~~~~~i~--~~~i~~Lv~-lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~ 420 (457)
T 1xm9_A 344 NSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTR-LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420 (457)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHH--HHTHHHHHH-TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHH
T ss_pred CHhHHHHHHHHHHHHhcCHHHHHHHH--HhhhHHHHH-hccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 88999999999999999998888774 389999999 5665532 46678999999999888888889999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 364 LTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+++|+.++.++.++.++++|.++|..+-.
T Consensus 421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 421 LNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 99999999887578999999999987654
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=1.1e-28 Score=257.08 Aligned_cols=286 Identities=11% Similarity=0.093 Sum_probs=234.1
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH-hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+.+..+.+.|.+...+.+.+..|++.|..++...+ .|+.++ +.|+||.||.+|++++.. ++..|++ +|.
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~-vk~~lv~d~g~Ip~LV~LL~s~d~~--------i~~~al~-~L~ 446 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE-CKEKLIEDKASIHALMDLARGGNQS--------CLYGVVT-TFV 446 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH-HHHHHHHCHHHHHHHHHHHHTTCGG--------GHHHHHH-HHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHccchHHHHHHHhCCCChH--------HHHHHHH-HHH
Confidence 45677888887654467899999999999998765 555666 589999999999987644 9999999 999
Q ss_pred hhcCCchh-----------------------------hh---hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728 172 LLLVGETE-----------------------------SL---NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 172 ~l~~~~~~-----------------------------~~---~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~ 219 (401)
||+.+.+. .+ +.+.++|+||.|+.+|+++++.+|+.|+++|.|| +.+
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL-A~d 525 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV-CGL 525 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH-HTS
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCC
Confidence 99975421 11 4556889999999999999999999999999999 876
Q ss_pred cchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHH---HhcCcHHHHHHHHHhhccccchHHH
Q 015728 220 HETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTL---VQEGAINGLIAYISNALTRERSLAA 295 (401)
Q Consensus 220 ~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~i---v~~G~v~~Lv~lL~~~~~~~~~~~~ 295 (401)
+ +++..+.+. |++|+|+.+| +++...++.|+++|.||+.+.++...+ ...|+||+|+++|.+ +.+...+.
T Consensus 526 ~---~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~--~~~~l~~~ 599 (810)
T 3now_A 526 K---ELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ--DCTALENF 599 (810)
T ss_dssp H---HHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST--TSCHHHHH
T ss_pred H---HHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC--CCcHHHHH
Confidence 5 899999886 8999999999 556679999999999999655443322 124699999999983 33444556
Q ss_pred HHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhc
Q 015728 296 IAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC-AGVLTQLLLLLQS 373 (401)
Q Consensus 296 ~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~ 373 (401)
.|+++|.+|+.. ++++..++ ++|+++.|+.+ +.++++.+++.|+++|+||+.++ +.+..++. .|+++.|+.++++
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii-~aG~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRII-KEQGVSKIEYY-LMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHH-HHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcC
Confidence 899999999987 56777776 78999999994 56677789999999999999874 56666775 7999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 374 QCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 374 ~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
+ +..+|+.|+|+|..++..+++..+
T Consensus 677 ~-d~~vq~~Aa~ALanLt~~s~~~~~ 701 (810)
T 3now_A 677 E-DEETATACAGALAIITSVSVKCCE 701 (810)
T ss_dssp S-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred C-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7 899999999999999986666544
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.2e-27 Score=241.78 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=222.9
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhc-CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRE-SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
..+..|+++|++ ++.+.|..|+..|++++.. ++.||..|+++|+||+||.+|+++.. .++++.|++ +|+
T Consensus 90 G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-------~~~~e~aa~-aL~ 159 (584)
T 3l6x_A 90 KGIPVLVGLLDH--PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-------MDLTEVITG-TLW 159 (584)
T ss_dssp THHHHHHHGGGC--SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-------HHHHHHHHH-HHH
T ss_pred CCcHHHHHHHCC--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-------HHHHHHHHH-HHH
Confidence 567788888874 4688999999999999985 68899999999999999999987432 458999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhh------------------cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFE------------------HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD 233 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~------------------~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~ 233 (401)
+|+.+++.+..++ + ++|+.|+.+|. ..+.+++++|+.+|.|| +..+ +++|..|.+.+
T Consensus 160 nLS~~~~~k~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL-s~~~--~~~R~~i~~~~ 234 (584)
T 3l6x_A 160 NLSSHDSIKMEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV-SSER--SEARRKLRECD 234 (584)
T ss_dssp HHTTSGGGHHHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH-TSSC--HHHHHHHHHST
T ss_pred HHhCCchhhHHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH-hcCC--HHHHHHHHHcC
Confidence 9998665544444 4 57999999872 12468999999999999 7765 25677777766
Q ss_pred HHHHHHHHHcc-------CC------------------------------------------------------------
Q 015728 234 RLLREIISLVH-------HN------------------------------------------------------------ 246 (401)
Q Consensus 234 g~i~~Lv~lL~-------~~------------------------------------------------------------ 246 (401)
|++++||.+|+ .+
T Consensus 235 Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll 314 (584)
T 3l6x_A 235 GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI 314 (584)
T ss_dssp THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH
T ss_pred CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH
Confidence 77777777652 11
Q ss_pred --------chhHHHHHHHHHHhcCCC-----chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 247 --------SEASDAGVRAFSALCSTE-----TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 247 --------~~~~~~a~~aL~~Ls~~~-----~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
..++++|+++|.||+... .++..+.+.|++|.|++||. +++..+++.|+++|.+|+.+..++..
T Consensus 315 ~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~~ 391 (584)
T 3l6x_A 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT---NEHERVVKAASGALRNLAVDARNKEL 391 (584)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhCChhHHHH
Confidence 224455666666665432 13334456799999999999 67889999999999999999989887
Q ss_pred HHhCCCcHHHHHHHHHhcC--------ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHH
Q 015728 314 LINNPNGVYALVKMVFRVS--------DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ-CSNRTKTKAR 384 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~ 384 (401)
| ..|+||.||+ ++..+ +......|+++|.||+..+++.++.+.+.|+|+.|+.+++++ .++..++.|+
T Consensus 392 I--~~g~ip~LV~-LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 392 I--GKHAIPNLVK-NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp H--HHHHHHHHHH-TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred H--HhCCHHHHHH-HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 7 3589999999 45554 345678899999999988888999999999999999999875 4789999999
Q ss_pred HHHHHHHH
Q 015728 385 MLLKLLRS 392 (401)
Q Consensus 385 ~~L~~l~~ 392 (401)
++|..+..
T Consensus 469 ~vL~nl~~ 476 (584)
T 3l6x_A 469 LVLQTIWG 476 (584)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999876
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=8.9e-27 Score=236.20 Aligned_cols=287 Identities=14% Similarity=0.120 Sum_probs=245.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+.+..+.+.|.+ ++++.|..|+..|++++.... .++..+++.|+||.|+.+|.+++. +.+++.|++ +|.
T Consensus 74 ~~l~~lv~~L~s--~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-------~~v~~~A~~-~L~ 143 (528)
T 4b8j_A 74 ESLPAMIGGVYS--DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-------PQLQFEAAW-ALT 143 (528)
T ss_dssp -CHHHHHHHHTS--SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-------HHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-------HHHHHHHHH-HHH
Confidence 556777777753 468899999999999987765 678889999999999999987652 459999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchh
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEA 249 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~ 249 (401)
+++.++++.+..+.+.|+|+.|+.+|++++..+++.|+++|.+| +.++ +.++..+... |++++|+.+| + .+..+
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l-~~~~--~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v 219 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNV-AGDS--PKCRDLVLAN-GALLPLLAQLNEHTKLSM 219 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HHTC--HHHHHHHHHT-TCHHHHHHTCCTTCCHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH-hCCC--hhhHHHHHHC-CcHHHHHHHHhcCCCHHH
Confidence 99987666766777889999999999999999999999999999 7654 2778888775 8899999999 4 35679
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+..|+++|.+|+....+....+..|++|.|+++|. +.+..++..|+++|.+|+.....+...+.+.|+++.|++ ++
T Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~-lL 295 (528)
T 4b8j_A 220 LRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LL 295 (528)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH-HT
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH-HH
Confidence 99999999999987666666667999999999998 678899999999999999887776544458899999999 67
Q ss_pred hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
.++++.++..|+++|.+|+.+++.....+++.|+++.|+.+|+++.++.+++.|.++|..+....++.
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~ 363 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ 363 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHH
Confidence 77788999999999999999888888899999999999999987658899999999999998744443
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.7e-27 Score=213.21 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=212.8
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~ 216 (401)
|+||.|+.+|.+++ ++++..|++ +|.+++.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+|
T Consensus 2 ~~i~~L~~~L~~~~--------~~~~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l- 71 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD--------SETQKEAAR-DLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI- 71 (252)
T ss_dssp CHHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHcCCC--------HHHHHHHHH-HHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 67999999998876 459999999 99999877766666666899999999999999999999999999999
Q ss_pred hcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728 217 SSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
+..+ ++++..+... |+++.|+.+|+ ++.+++..|+++|.+|+ .+++++..+++.|+++.|+++|. +++..++
T Consensus 72 ~~~~--~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~ 145 (252)
T 4hxt_A 72 ASGP--DEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQ 145 (252)
T ss_dssp TTSC--HHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHH
T ss_pred HcCC--hHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHH
Confidence 7663 2888888875 88999999994 56779999999999999 67789999999999999999999 6788999
Q ss_pred HHHHHHHHHHhCCHhh-HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc
Q 015728 295 AIAMARIEQLLAIENS-KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS 373 (401)
Q Consensus 295 ~~a~~~L~~La~~~~~-~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~ 373 (401)
..|+++|.+|+...+. +..+. +.|+++.|++ +++++++..+..|+.+|.+|+..+++.+..+.+.|+++.|+.++++
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIV-DAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HCcCHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence 9999999999986544 45664 7899999999 6778888999999999999999888888899999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHhhH
Q 015728 374 QCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 374 ~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
+ ++.+|+.|.++|..+..+.+
T Consensus 224 ~-~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 224 T-DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp S-CHHHHHHHHHHHHHHHHTCB
T ss_pred C-cHHHHHHHHHHHHHHHcCCC
Confidence 7 89999999999999998543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=2.8e-26 Score=232.57 Aligned_cols=286 Identities=12% Similarity=0.178 Sum_probs=242.8
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
...+..|.++|.+. +++..|..|++.|.+++..++.++..+++.|+||.|+.+|.+++ ..+++.|++ +|.
T Consensus 116 ~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~-aL~ 185 (528)
T 4b8j_A 116 SGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS--------DDVREQAVW-ALG 185 (528)
T ss_dssp TTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC--------HHHHHHHHH-HHH
Confidence 36788888888644 23789999999999999999999999999999999999998865 459999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchh
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEA 249 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~ 249 (401)
+|+.+.+..+..+.+.|+++.|+.+| ++.+..++..++++|.+| +...+ .....+ . .|+++.|+.+| +++..+
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L-~~~~~--~~~~~~-~-~~~l~~L~~lL~~~~~~v 260 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF-CRGKP--QPSFEQ-T-RPALPALARLIHSNDEEV 260 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH-HCSSS--CCCHHH-H-TTHHHHHHHHTTCCCHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC--CCcHHH-H-HHHHHHHHHHHCCCCHHH
Confidence 99977677677777889999999999 667889999999999999 65531 222222 2 48899999999 456779
Q ss_pred HHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHH
Q 015728 250 SDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKM 327 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~ 327 (401)
+..|+++|.+|+...+++ ..+++.|++|.|+.+|. +++..++..|+.+|.+|+.. +.....++ +.|+++.|+.
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~- 335 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---HPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLS- 335 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---CCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHH-
Confidence 999999999999776654 56778999999999999 67789999999999999985 44555565 8999999999
Q ss_pred HHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhh
Q 015728 328 VFRVS-DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEEL 398 (401)
Q Consensus 328 l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~ 398 (401)
+++++ ++.++..|+++|.+|+..+++....+++.|+++.|+.+|+++ ++.+|+.|+++|..+... .++..
T Consensus 336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~ 407 (528)
T 4b8j_A 336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQI 407 (528)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHH
Confidence 56666 789999999999999988888888999999999999999988 999999999999999985 35543
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.7e-26 Score=209.97 Aligned_cols=238 Identities=16% Similarity=0.209 Sum_probs=206.2
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
....+.++.+|.+++.. ++..|++ .|.++...++..+..+.+.|+|+.|+.+|++++.+++..|+++|.++
T Consensus 11 ~~~~~~~~~~L~s~~~~--------~~~~a~~-~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQ--------EQLSATR-KFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp TCSHHHHHHHHHSSCSS--------HHHHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHH--------HHHHHHH-HHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34689999999998865 9999999 77544333445555666889999999999999999999999999999
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSL 293 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~ 293 (401)
+..+ ++++..+... |+++.|+.+| +++..++..|+++|.||+.+++++ ..+++.|++|.|+++|. +++..+
T Consensus 82 -~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v 154 (252)
T 4db8_A 82 -ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQI 154 (252)
T ss_dssp -TTSC--HHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHH
T ss_pred -hcCC--HHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHH
Confidence 7643 2888888876 8899999999 456779999999999999999988 88899999999999999 678899
Q ss_pred HHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 015728 294 AAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQ 372 (401)
Q Consensus 294 ~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~ 372 (401)
+..|+++|.+|+..+ +.+..+. +.|+++.|++ +++++++..++.|+.+|.+|+..+++.+..+.+.|+++.|+.+++
T Consensus 155 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 155 LQEALWALSNIASGGNEQIQAVI-DAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence 999999999999854 5555554 7899999999 677888899999999999999888888889999999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 015728 373 SQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 373 ~~~~~~~~~~A~~~L~~l~~ 392 (401)
++ ++.+|+.|.++|..|.+
T Consensus 233 ~~-~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 233 HE-NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp CS-SSHHHHTHHHHHHTTC-
T ss_pred CC-CHHHHHHHHHHHHHHhc
Confidence 88 88999999999998765
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=4.5e-25 Score=218.30 Aligned_cols=288 Identities=12% Similarity=0.164 Sum_probs=242.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.+.|.+. ++++.|..|++.|.+++..++.++..+++.|++|.|+.+|++++ +++++.|++ +|.+
T Consensus 64 ~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--------~~vr~~a~~-~L~~ 133 (450)
T 2jdq_A 64 GVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF--------EDVQEQAVW-ALGN 133 (450)
T ss_dssp THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred CcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence 5678888877643 35789999999999999988888888889999999999998875 559999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
++.+....+..+.+.|+++.|+.+|++ .+.+++..|+++|.+| +.... +..+..+. .|+++.|+.+++ ++..++
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l-~~~~~-~~~~~~~~--~~~l~~L~~~l~~~~~~v~ 209 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL-CRGKS-PPPEFAKV--SPCLNVLSWLLFVSDTDVL 209 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSS-SCCCGGGT--GGGHHHHHHHTTCCCHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH-hCCCC-CCCCHHHH--HHHHHHHHHHHccCCHHHH
Confidence 998776677777688999999999985 6889999999999999 64320 13333333 488999999994 567799
Q ss_pred HHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728 251 DAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
..++++|.+|+... +++..+++.|++|.|+++|. +.+..++..|+.+|.+|+...+.....+.+.|+++.|++ ++
T Consensus 210 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll 285 (450)
T 2jdq_A 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM---HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH-LL 285 (450)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HT
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC---CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH-HH
Confidence 99999999999754 57778889999999999998 678899999999999999876554443348899999999 57
Q ss_pred hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhhc
Q 015728 330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEELK 399 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~~ 399 (401)
+++++..++.|+++|.+|+.++++..+.+++.|+++.|+.+++++ ++.+|+.|.++|..+... .++..+
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 777889999999999999987777777889999999999999988 899999999999999875 455443
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=1.7e-25 Score=227.02 Aligned_cols=286 Identities=18% Similarity=0.203 Sum_probs=241.9
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+.+..+.+.|.+ ++++.|..|+..|++++... ..++..+++.|++|.|+.+|.+++. +.++..|++ +|.
T Consensus 87 ~~i~~lv~~L~s--~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-------~~v~~~A~~-~L~ 156 (530)
T 1wa5_B 87 QELPQMTQQLNS--DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EMLQLEAAW-ALT 156 (530)
T ss_dssp CCHHHHHHHHSC--SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-------HHHHHHHHH-HHH
Confidence 346666666754 36889999999999998753 4467788899999999999988632 569999999 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
+++.++++.+..+.+.|+++.|+.+|++++.++++.|+++|.+| +.++ ++++..+... |+++.|+.+|. .+..++
T Consensus 157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l-~~~~--~~~~~~~~~~-~~l~~L~~ll~~~~~~v~ 232 (530)
T 1wa5_B 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV-AGDS--TDYRDYVLQC-NAMEPILGLFNSNKPSLI 232 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHGGGSCCHHHH
T ss_pred HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-hCCC--ccchHHHHHc-CcHHHHHHHhccCCHHHH
Confidence 99977666666666889999999999999999999999999999 7653 2677777765 88999999995 566799
Q ss_pred HHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHH
Q 015728 251 DAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l 328 (401)
..|+++|.+|+... .+.......|++|.|+++|. +++..++..|+++|.+|+.. ++....++ +.|+++.|++ +
T Consensus 233 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~-l 307 (530)
T 1wa5_B 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVE-L 307 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHH-G
T ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHH-H
Confidence 99999999999765 55666677899999999998 67889999999999999976 44556665 7899999999 5
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+.+.+..++..|+.+|.+|+.+++...+.+++.|+++.|+.+|+++ .+..|+.|.++|..+....++..
T Consensus 308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777888999999999999998888888889999999999999988 89999999999999987555543
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=5.1e-25 Score=223.45 Aligned_cols=281 Identities=13% Similarity=0.145 Sum_probs=239.3
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.+.|.+. +++..|..|++.|.+++..++.++..+++.|++|.|+.+|.+++ +++++.|++ +|.+
T Consensus 130 g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--------~~vr~~A~~-aL~~ 199 (530)
T 1wa5_B 130 GVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--------VEVKEQAIW-ALGN 199 (530)
T ss_dssp TCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC--------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence 5677888877643 35789999999999999999889999999999999999999865 559999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 251 (401)
|+.+.+..+..+.+.|+++.|+.+|.+.+.+++..|+++|.+| +.... ........ .|+++.|+.+|. ++..++.
T Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L-~~~~~--~~~~~~~~-~~~l~~L~~lL~~~d~~v~~ 275 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-CRGKK--PQPDWSVV-SQALPTLAKLIYSMDTETLV 275 (530)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH-HCCSS--SCCCHHHH-GGGHHHHHHHTTCCCHHHHH
T ss_pred HhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH-hCCCC--CCCcHHHH-HhHHHHHHHHHcCCCHHHHH
Confidence 9977666777766889999999999998999999999999999 64420 11222223 488999999994 5667999
Q ss_pred HHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHH
Q 015728 252 AGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 252 ~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
.|+++|.+|+.. ++.+..+++.|++|.|+.+|. +.+..++..|+.+|.+|+... .....+. +.|+++.|+. ++
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~-lL 350 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRL-LL 350 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HT
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC---CCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHH-HH
Confidence 999999999965 456778889999999999999 678899999999999999764 4445554 7799999999 67
Q ss_pred hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
.+++...++.|+++|.+|+..+++....+++.|+++.|+.+|+++ ++.+|+.|.++|..+...
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 777889999999999999988777777888999999999999887 899999999999999874
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.4e-25 Score=202.82 Aligned_cols=238 Identities=17% Similarity=0.257 Sum_probs=207.3
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
.+..+.+.|.+. +++.|..|+..|.+++..++.++..+.+.|+++.|+.+|++++ .++++.|++ +|.++
T Consensus 3 ~i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~v~~~a~~-~L~~l 71 (252)
T 4hxt_A 3 DVEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--------SEVQKEAAR-ALANI 71 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--------HHHHHHHHH-HHHHH
Confidence 466777777644 4889999999999999999989999999999999999999876 459999999 99999
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA 252 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~ 252 (401)
+.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+| +... ++++..+... |+++.|+.+|+ ++..++..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l-~~~~--~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~ 147 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI-ASGP--DEAIKAIVDA-GGVEVLVKLLTSTDSEVQKE 147 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH-TTSC--HHHHHHHHHT-THHHHHHHHTTCSCHHHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-HcCC--HHHHHHHHHC-CCHHHHHHHHcCCCHHHHHH
Confidence 987667777777899999999999999999999999999999 7433 2788888775 88999999994 56779999
Q ss_pred HHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHh
Q 015728 253 GVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 253 a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
|+++|.+|+.. ++++..+++.|+++.|+++|. +++..++..|+++|.+|+.. ++.+..+. +.|+++.|++ +++
T Consensus 148 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~-ll~ 222 (252)
T 4hxt_A 148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQK-LLT 222 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHH-GGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHH-HHC
Confidence 99999999974 456688899999999999999 67889999999999999974 55566665 8899999999 677
Q ss_pred cCChhHHHHHHHHHHHHhcCC
Q 015728 331 VSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~ 351 (401)
++++..++.|+.+|.+|+...
T Consensus 223 ~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 223 STDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHHcCC
Confidence 888899999999999998764
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=9.8e-26 Score=206.20 Aligned_cols=234 Identities=16% Similarity=0.236 Sum_probs=200.5
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
...+.+.|.+ ++++.|..|++.|+++...++.+++.+.+.|+||.|+.+|.+++ ++++..|++ +|.+++
T Consensus 14 ~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~-~L~~l~ 82 (252)
T 4db8_A 14 LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--------EQILQEALW-ALSNIA 82 (252)
T ss_dssp HHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--------HHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence 4455555654 45779999999998888777789999999999999999998876 459999999 999999
Q ss_pred CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhh-hhhccchHHHHHHHHHcc-CCchhHHH
Q 015728 175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC-CKLGKDDRLLREIISLVH-HNSEASDA 252 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~-~~i~~~~g~i~~Lv~lL~-~~~~~~~~ 252 (401)
.++++.+..+.+.|+++.|+.+|++++.++++.|+++|.+| +... +++ ..+... |+++.|+.+|+ ++..++..
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l-~~~~---~~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~ 157 (252)
T 4db8_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGG---NEQIQAVIDA-GALPALVQLLSSPNEQILQE 157 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHT-THHHHHHHGGGCSCHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCC---chHHHHHHHC-CCHHHHHHHHhCCCHHHHHH
Confidence 86666666777899999999999999999999999999999 8766 666 666665 88999999994 56679999
Q ss_pred HHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHh
Q 015728 253 GVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 253 a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
|+++|.+|+. .++++..+++.|++|.|+++|. +++..++..|+++|.+|+. +++.+..+. +.|+++.|++ +++
T Consensus 158 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~-ll~ 232 (252)
T 4db8_A 158 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQ-LQS 232 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHT-TTT
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHH-HhC
Confidence 9999999997 4567778889999999999999 6788999999999999995 455666665 8899999999 677
Q ss_pred cCChhHHHHHHHHHHHHhc
Q 015728 331 VSDHEGSENAINSLMMICC 349 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~ 349 (401)
++++.+++.|+.+|.+|+.
T Consensus 233 ~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 233 HENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp CSSSHHHHTHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 7888999999999999875
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=6.4e-25 Score=221.85 Aligned_cols=279 Identities=12% Similarity=0.148 Sum_probs=238.1
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..+.+.|++. ++++.+..|+..|++++... .++..+.+.|+||.|+.+|++++ +.++..|++ +|.+
T Consensus 59 ~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~-~L~~ 127 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPV--------DSVLFYAIT-TLHN 127 (529)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred chHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence 4566777777643 36889999999999998764 49999999999999999998876 459999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc-hhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS-EAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~-~~~ 250 (401)
++.++++.+..+.+.|+++.|+.+|++++.+.+..++.+|.++ +..+ ++++..+... |+++.|+.+|+ ++. ..+
T Consensus 128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l-a~~~--~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~ 203 (529)
T 1jdh_A 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL 203 (529)
T ss_dssp HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHHCCCHHHH
T ss_pred HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHC-CCHHHHHHHHHhCChHHHH
Confidence 9976666666776889999999999999999999999999999 6543 3888888876 78999999994 333 477
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
..+..+|++|+.+++++..+++.|++++|++++. +++..++..++++|.+|+....... ...|+++.|++ +++
T Consensus 204 ~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~-ll~ 276 (529)
T 1jdh_A 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQ-LLG 276 (529)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT---SSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh---CCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHH-HHc
Confidence 8899999999999999999999999999999999 5688899999999999997654322 23488999999 578
Q ss_pred cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHh
Q 015728 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC-SNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~ 393 (401)
+.++..++.|+++|.+|+.++++.+..+.+.|+++.|+.+|...+ .+.+++.|..+|..+...
T Consensus 277 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 888899999999999999988888889999999999999998642 479999999999988753
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=199.01 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=169.3
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
.++.+++.|++.+...+.|..|+..|++++..++.+|..+++.|+||+||.+|++++ +++|+.|++ +|.+|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~--------~~vq~~Aa~-aL~nL 79 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN--------EDVQRAVCG-ALRNL 79 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHH
Confidence 366777888766444478999999999999999999999999999999999999876 459999999 99999
Q ss_pred cCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc----C---
Q 015728 174 LVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH----H--- 245 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~----~--- 245 (401)
+.++++++..+.++|+||+|+.+|+ +++.+++++|+.+|++| |..+ ++|..|+. ++|++|+.++. +
T Consensus 80 a~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~---~~k~~i~~--~~i~~Lv~ll~~p~sG~~~ 153 (233)
T 3tt9_A 80 VFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSND---KLKNLMIT--EALLTLTENIIIPFSGWPE 153 (233)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSG---GGHHHHHH--HHHHHHCCCCCHHHHCCCG
T ss_pred HhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcCh---hhHHHHHh--ccHHHHHHHHhccccCCcc
Confidence 9876677777779999999999998 47899999999999999 8776 88999985 56899998761 1
Q ss_pred ----------CchhHHHHHHHHHHhcC-CCchhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCC
Q 015728 246 ----------NSEASDAGVRAFSALCS-TETNRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 246 ----------~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~ 307 (401)
+.+++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. +..+...+|+|+.+|++|+..
T Consensus 154 ~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 154 GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 23699999999999997 55899999985 6799999999852 123567899999999999853
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=201.23 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=168.7
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIIS 217 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s 217 (401)
.+|.||.+|.+++.. .+++..|++ .+.+|+..+++.+..+.+.|+||+|+.+|++++.++|+.|+++|.+| +
T Consensus 9 ~i~~lV~lL~s~~~~------~~~q~~Aa~-~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nL-a 80 (233)
T 3tt9_A 9 TLERAVSMLEADHML------PSRISAAAT-FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL-V 80 (233)
T ss_dssp CHHHHHHTCCSSCCC------HHHHHHHHH-HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-H
T ss_pred cHHHHHHHhCCCCch------HHHHHHHHH-HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 589999999998763 358899999 88889876666777777899999999999999999999999999999 7
Q ss_pred cccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh--c------
Q 015728 218 SSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA--L------ 287 (401)
Q Consensus 218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~--~------ 287 (401)
..+ +++|..|.+. |+||+|+.+|+ ++.+++++|+.+|+||+..+++|..|++. +||+|++++... +
T Consensus 81 ~~~--~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 81 FED--NDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp TTC--HHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred hCC--HHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence 643 3899999987 88999999994 46679999999999999999999999975 799999976310 0
Q ss_pred -----cccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhc------CChhHHHHHHHHHHHHhcC
Q 015728 288 -----TRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRV------SDHEGSENAINSLMMICCD 350 (401)
Q Consensus 288 -----~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~------~~~~~~~~a~~~L~~l~~~ 350 (401)
..+.+++++|.++|++|+. ++++|..+....|.|+.||.. ++. .+.+.+|+|+.+|.||+..
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~-l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHY-VRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHH-HHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHH-HHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1245899999999999997 569999997667889999995 443 2457899999999999874
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=223.98 Aligned_cols=278 Identities=12% Similarity=0.144 Sum_probs=237.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..+.+.|++. .+.+.+..|+..|++++...+ ++..+.+.|+|+.|+.+|.+++ +.++..|++ +|.+
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~--------~~v~~~A~~-aL~n 124 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPV--------DSVLFYAIT-TLHN 124 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHHHHTTCSS--------HHHHHHHHH-HHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHHHHHhCCC--------HHHHHHHHH-HHHH
Confidence 5577777777643 368899999999999887754 9999999999999999998876 459999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-C-chhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-N-SEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~-~~~~ 250 (401)
|+.++++.+..+.+.|+|+.|+.+|++++.+.+..++.+|.+| +... ++++..+... |+++.|+.+|+. + ...+
T Consensus 125 L~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~--~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~ 200 (644)
T 2z6h_A 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL 200 (644)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHTTCCCHHHH
T ss_pred HHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH-HhcC--cHHHHHHHHc-CChHHHHHHHHcCChHHHH
Confidence 9876556666666889999999999999998888888999999 6532 3889888886 789999999943 3 3588
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
..++.+|++|+.+++++..+++.|+++.|++++. +.+..+++.++++|.+|+...... . ...++++.|++ +++
T Consensus 201 ~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~--~-~~~~~i~~Lv~-lL~ 273 (644)
T 2z6h_A 201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--E-GMEGLLGTLVQ-LLG 273 (644)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT---CSCHHHHHHHHHHHHHHGGGCTTC--C-SCHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcchhh--h-hhhhHHHHHHH-HHc
Confidence 9999999999999999999999999999999999 568889999999999999754332 1 23478999999 677
Q ss_pred cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHH
Q 015728 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRS 392 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~ 392 (401)
+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.+|...++ +.+++.|.++|..|..
T Consensus 274 ~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 8888999999999999999888888899999999999999987433 7999999999999975
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=3.2e-23 Score=205.01 Aligned_cols=282 Identities=13% Similarity=0.149 Sum_probs=235.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.++|.+ ++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|.+... ..+++.|++ +|.+
T Consensus 107 ~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~-~L~~ 176 (450)
T 2jdq_A 107 GAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVW-ALSN 176 (450)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHH-HHHH
Confidence 466777777764 468899999999999999998899999999999999999985322 569999999 9999
Q ss_pred hcCCc-hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 173 LLVGE-TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 173 l~~~~-~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
++.+. ......+ ..++++.|+.+|++++.+++..++++|.+| +... ++.+..+... |+++.|+.+|. ++..++
T Consensus 177 l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l-~~~~--~~~~~~~~~~-~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYL-SDGP--NDKIQAVIDA-GVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHH-TSSS--HHHHHHHHHT-TTHHHHHHHTTCSCHHHH
T ss_pred HhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHH-HCCC--cHHHHHHHHc-CcHHHHHHHHCCCchhHH
Confidence 98654 2222233 268999999999999999999999999999 7643 2556666654 88999999994 567799
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHH
Q 015728 251 DAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l 328 (401)
..|+++|.+|+...+ .+..+++.|+++.|+++|. +++..++..|+++|.+++. .++....++ +.|+++.|++ +
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~-~ 326 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS---SPKESIKKEACWTISNITAGNRAQIQTVI-DANIFPALIS-I 326 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-H
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHH-H
Confidence 999999999997655 4556788999999999999 6788999999999999996 455666665 6799999999 5
Q ss_pred HhcCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728 329 FRVSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
++++++.++..|+++|.+|+.+ +++..+.+++.|+++.|+.+++.+ ++.+++.|.++|..+.+..+
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch
Confidence 6777889999999999999975 556667788999999999999887 89999999999999988444
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.2e-23 Score=212.58 Aligned_cols=278 Identities=15% Similarity=0.143 Sum_probs=232.8
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.++|++ ++++.+..|+..|.+++..++.++..+++.|++|.|+.+|.+++ .+++..++. +|.+
T Consensus 101 g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~~~~-~L~~ 169 (529)
T 1jdh_A 101 GGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI 169 (529)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--------HHHHHHHHH-HHHH
Confidence 467777777764 35789999999999999998889999999999999999998865 458888888 8889
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
++.++++.+..+.+.|+++.|+.+|++++. ..+..++.+|.+| +..+ +++..+... |+++.|+.+++ ++.+.+
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l-~~~~---~~~~~~~~~-g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTST---THHHHHHHT-THHHHHHTTTTSSCHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH-hcCc---ccHHHHHHC-CCHHHHHHHHhCCChHHH
Confidence 998766776677688999999999988755 5667788899999 8665 788888875 88999999994 566799
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHH
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+.++++|.+|+....... ...|++|.|+++|. +.+.++++.|+++|.+|+.. ++++..+. +.|+++.|++++.
T Consensus 245 ~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~ 318 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL 318 (529)
T ss_dssp HHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHH
Confidence 999999999997654322 23589999999998 68889999999999999986 46777776 7899999999654
Q ss_pred hcC-ChhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 330 RVS-DHEGSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 330 ~~~-~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..+ ++..++.|+.+|.+|+.+++ ..+..+.+.|+++.|+.+|+++..+..++.|.++|..+..
T Consensus 319 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 433 36899999999999998643 3577899999999999999988556999999999999886
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=3e-23 Score=219.58 Aligned_cols=278 Identities=12% Similarity=0.141 Sum_probs=235.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+.+..|.+.|++. .+.+.+..|+..|++++.. +.++..+.+.|+|+.|+.+|++++ +.++..|++ +|.+
T Consensus 192 ~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~--------~~v~~~A~~-aL~n 260 (780)
T 2z6g_A 192 QMVSAIVRTMQNT-NDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV--------DSVLFHAIT-TLHN 260 (780)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred ChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence 3455566666543 3688999999999998776 557999999999999999998876 459999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCch-hH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSE-AS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~-~~ 250 (401)
|+.+.++.+..+.+.|+|+.|+.+|++++..++..++.+|.++ +... ++++..+... |+++.|+.+|+ ++.+ .+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L-a~~~--~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHTT-THHHHHHHHHTTCCCHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCC--hHHHHHHHHc-CCHHHHHHHHhcCCHHHHH
Confidence 9977666677777889999999999999999999999999999 6533 3888888886 77999999995 3433 67
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
..++.+|++|+.++.++..+++.|+|+.|+.+|. +.+..++..|+++|.+|+...... . ...++++.|++ +++
T Consensus 337 ~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~---~~~~~~~~~a~~~L~~L~~~~~~~--~-~~~~~i~~Lv~-lL~ 409 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--E-GMEGLLGTLVQ-LLG 409 (780)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTT---CSCHHHHHHHHHHHHHHHTTCTTC--S-CCHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHc---CCchHHHHHHHHHHHHHhccchhh--h-hhhhHHHHHHH-HHc
Confidence 7899999999999999999999999999999998 567889999999999999765331 1 24578999999 678
Q ss_pred cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHH
Q 015728 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRS 392 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~ 392 (401)
..+..+++.|+.+|.+|+.++++.+..+++.|+++.|+.+|...++ +.+++.|.++|..|..
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999888888899999999999999987423 5899999999998875
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=7e-23 Score=182.01 Aligned_cols=197 Identities=16% Similarity=0.220 Sum_probs=173.1
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-C
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-T 263 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~ 263 (401)
..|..+.|+.+|++++.+++..|+++|.++ +..+ ++++..+.+. |+++.|+.+|+ ++..++..|+++|.||+. +
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l-~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQI-ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHH-HTSC--HHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHH-HcCC--HHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 457899999999999999999999999999 6443 2778888776 88999999994 567799999999999994 6
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRVSDHEGSENAIN 342 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~ 342 (401)
++++..+++.|++|.|+.+|. +++..++..|+++|.+|+.+. +.+..+. +.|+++.|++ +++++++.+++.|+.
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~ 160 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQ-LLSSPNEQILQEALW 160 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HTTCSCHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHH-HHcCCCHHHHHHHHH
Confidence 778999999999999999999 678899999999999999654 4555665 8899999999 677788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 343 SLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 343 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+|.+|+.++++.+..+.+.|+++.|+.+++++ ++.+|+.|.++|+.|+.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 99999998888888999999999999999887 99999999999998864
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=6.3e-23 Score=212.97 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=232.1
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.++|++ ++.+.|..|+..|.+++..++..+..+++.|++|.|+.+|++++ .+++..++. +|.+
T Consensus 98 g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--------~~~~~~a~~-~L~~ 166 (644)
T 2z6h_A 98 GGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI 166 (644)
T ss_dssp THHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--------HHHHHHHHH-HHHH
Confidence 567777787764 35789999999999999998889999999999999999998875 347777778 8888
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGS-CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
++..+++.+..+.+.|+++.|+.+|++++ ...+..++.+|.+| +... +++..+... |+++.|+.++. ++...+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL-s~~~---~~~~~l~~~-g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-TTCT---THHHHHHHT-THHHHHHTTTTCSCHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH-hcCc---ccHHHHHHC-CCHHHHHHHHhcCCHHHH
Confidence 99766666666668899999999998775 46778999999999 8765 889988886 88999999994 566799
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHH
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+.++++|.||+...... ....|++|.|+++|. +.+.++++.|+++|.+|+.. ++++..+. +.|+++.|++++.
T Consensus 242 ~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---~~d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHH
Confidence 99999999999754332 223589999999999 67889999999999999986 46677775 7899999999655
Q ss_pred hcCC-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 330 RVSD-HEGSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 330 ~~~~-~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..++ +.+++.|+.+|.+|+..++ ..+..+...|+++.|+.+|+++.++..++.|.++|..|..
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 4443 6899999999999997543 3566688999999999999887557999999999999886
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.7e-22 Score=205.70 Aligned_cols=278 Identities=10% Similarity=0.104 Sum_probs=217.7
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch--------------------------------------hhhHHHhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP--------------------------------------ASNCLIQL 136 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~r~~i~~~ 136 (401)
+..|.++++.. .+......++..|.|++...+. ++..+.++
T Consensus 378 L~~Lv~llk~~-~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 378 TEILLTMIKSQ-KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHTTT-CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 45555666531 2334667777777777763331 57788899
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHH---HHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCS---IKKRLCHLVE 213 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~---~~~~aa~~L~ 213 (401)
|+||.|+.+++++++ .+++.|++ +|.+|+.+. +.|..+++.|++++|+.+|.+++.. .|..|+.+|.
T Consensus 457 GvIp~Lv~Ll~S~s~--------~~re~A~~-aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 457 ELISFLKREMHNLSP--------NCKQQVVR-IIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp THHHHHHHHGGGSCH--------HHHHHHHH-HHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCH--------HHHHHHHH-HHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 999999999998774 49999999 999999664 5556666889999999999988654 7999999999
Q ss_pred HHHhcccchhhhhhhhc--cchHHHHHHHHHccC--Cch-------------hHHHHHHHHHHhcCCCc-----hhHHHH
Q 015728 214 VIISSSHETKELCCKLG--KDDRLLREIISLVHH--NSE-------------ASDAGVRAFSALCSTET-----NRKTLV 271 (401)
Q Consensus 214 ~l~s~~~~~~~~~~~i~--~~~g~i~~Lv~lL~~--~~~-------------~~~~a~~aL~~Ls~~~~-----n~~~iv 271 (401)
+| .... +....+. ...|+|++|+.+|.. +.. .+..|+.||.||+..++ .|..|+
T Consensus 527 rL-lis~---np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 527 RM-LIFT---NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HH-HHTS---CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HH-HhcC---CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 99 5443 2233332 223899999999962 211 27799999999998874 388899
Q ss_pred hc-CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHHhCC-----CcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 272 QE-GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALINNP-----NGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 272 ~~-G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~~~~-----g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
+. |++|.|..+|. +++..++..|+++|++|+.++++. ..+.... +.++.||. +++.++...++.|.++|
T Consensus 603 ~~~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~-Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 603 STKVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK-LLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HSHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH-GGGCSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 85 99999999999 677889999999999999999886 3554222 13889999 67888999999999999
Q ss_pred HHHhcCCHHHHHHHHHc-CcHHHHHHHhhc--CCCHHHHHHHHHHHHHHHH
Q 015728 345 MMICCDSLQAREEAICA-GVLTQLLLLLQS--QCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 345 ~~l~~~~~~~~~~~~~~-g~v~~L~~ll~~--~~~~~~~~~A~~~L~~l~~ 392 (401)
.+++..++...+.+++. ++++.++.++++ + ++..+.+++.+++.+.+
T Consensus 679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 679 ANIATTIPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 99976667666688876 899999999998 5 89999999999999986
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=2e-22 Score=178.98 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=170.1
Q ss_pred hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 015728 135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEV 214 (401)
Q Consensus 135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 214 (401)
..|+.+.|+.+|.+++ ++++..|++ +|.+++.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+
T Consensus 10 ~~~~~~~l~~LL~s~~--------~~v~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 80 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD--------QQELQSALR-KLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80 (210)
T ss_dssp ---CHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCC--------HHHHHHHHH-HHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4688999999998876 459999999 9999997666666666689999999999999999999999999999
Q ss_pred HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccch
Q 015728 215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERS 292 (401)
Q Consensus 215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 292 (401)
| +..+ ++++..+.+. |+++.|+.+|+ ++..++..|+++|.||+. +++++..+++.|++|.|+++|. +++..
T Consensus 81 l-~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~ 153 (210)
T 4db6_A 81 I-ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQ 153 (210)
T ss_dssp H-TTSC--HHHHHHHHHT-TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHH
T ss_pred H-hcCC--cHHHHHHHHC-CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---CCCHH
Confidence 9 7543 2788888775 88999999994 567799999999999995 5556778899999999999999 67889
Q ss_pred HHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 293 LAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 293 ~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
++..|+++|.+|+.. ++.+..+. +.|+++.|++ ++.++++.+++.|+.+|.+|+.
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~~~~-~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999999987 66777775 7899999999 6778888999999999999975
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=5.9e-22 Score=209.66 Aligned_cols=278 Identities=15% Similarity=0.155 Sum_probs=229.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.++|++ ++...|..|+..|.+++...+..+..+.+.|+|+.|+.+|.+.+ .++++.++. +|.+
T Consensus 234 g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~--------~~v~~~a~~-aL~~ 302 (780)
T 2z6g_A 234 GGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI 302 (780)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------HHHHHHHHH-HHHH
Confidence 345566666654 35789999999999999999889999999999999999998865 458888888 8888
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 250 (401)
++..+++.+..+.+.|+++.|+.+|++++. ..++.++.+|.+| +... +++..+... |+++.|+.+|. ++...+
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L-s~~~---~~~~~i~~~-g~l~~Ll~lL~~~~~~~~ 377 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV 377 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTST---THHHHHHHT-THHHHHGGGTTCSCHHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCh---HHHHHHHHh-chHHHHHHHHcCCchHHH
Confidence 887666666666688999999999988765 4567888999999 7665 788888875 88999999994 566799
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHH
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+.|+++|.+|+...... ....|+++.|+++|. +.+..+++.|+++|.+|+..+ +++..+. +.|+++.|+++|.
T Consensus 378 ~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~---~~d~~vr~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL 451 (780)
T ss_dssp HHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhh--hhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHH
Confidence 99999999999755431 234679999999998 678899999999999999864 5666665 8899999999665
Q ss_pred hcCC-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 330 RVSD-HEGSENAINSLMMICCDSLQ---AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 330 ~~~~-~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..++ ..+++.|+.+|.+|+..+.+ .+..+...|+++.|+.+|.++..+..++.|.++|..|..
T Consensus 452 ~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 5444 37999999999999875432 466888999999999999888456999999999999986
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=4.4e-21 Score=179.41 Aligned_cols=226 Identities=10% Similarity=0.063 Sum_probs=177.2
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHH-HhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLK-QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
+++.+.+..|+..|..++...+ |+..|.+.|++|+|+. +|.+++ +.+++.|++ +|.+++.+++..+..+
T Consensus 51 ~~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~--------~~vr~~Aa~-~Lg~ia~~n~~~~~~v 120 (296)
T 1xqr_A 51 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGA--------AGLRWRAAQ-LIGTCSQNVAAIQEQV 120 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSS--------HHHHHHHHH-HHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCC--------HHHHHHHHH-HHHHHHhCCHHHHHHH
Confidence 3557899999999999998654 8888899999999999 998876 559999999 9999998888777777
Q ss_pred ccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC
Q 015728 185 NEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS 262 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~ 262 (401)
.+.|++++|+.+|+++ +..++..|+++|.+| .... +.....+... |+++.|+.+| +++..+++.|+++|.+|+.
T Consensus 121 v~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl-~~~~--~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCL-VREQ--EAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcCC--cHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999865 789999999999999 5433 1556666665 7899999999 5677899999999999985
Q ss_pred -CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCC-CcHHHHHHHH---Hh-cC-Ch
Q 015728 263 -TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNP-NGVYALVKMV---FR-VS-DH 334 (401)
Q Consensus 263 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~-g~i~~Lv~~l---~~-~~-~~ 334 (401)
+++.+..+++.|+||+|+.+|. +++..+++.|+.+|.+|+.... ...... .. ..+..+++-. ++ .. ..
T Consensus 197 ~~~~~~~~vv~~g~i~~Lv~LL~---~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~~~~lq~~e~~~ 272 (296)
T 1xqr_A 197 GHPEHKGTLCSMGMVQQLVALVR---TEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHRCQLLQQHEEYQ 272 (296)
T ss_dssp HCGGGHHHHHHTTHHHHHHHHHT---SCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHHHHHHTTCGGGH
T ss_pred CChHHHHHHHHcCCHHHHHHHHc---CCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHHHHHccchHHHH
Confidence 5678999999999999999999 6788999999999999998733 333332 22 1233333211 11 11 23
Q ss_pred hHHHHHHHHHHHHhc
Q 015728 335 EGSENAINSLMMICC 349 (401)
Q Consensus 335 ~~~~~a~~~L~~l~~ 349 (401)
+..+.|..++..+..
T Consensus 273 e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 273 EELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcC
Confidence 456666666666543
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=6e-20 Score=171.74 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHH
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLR 237 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~ 237 (401)
.+.+..|+. .|..+..+.++...+ ...|++++|+. +|++++.++|+.|+++|.++ +.++ +.++..+... |+++
T Consensus 54 ~e~k~~Al~-~L~~lv~~~dna~~~-~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~i-a~~n--~~~~~~vv~~-g~l~ 127 (296)
T 1xqr_A 54 QQEREGALE-LLADLCENMDNAADF-CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC-SQNV--AAIQEQVLGL-GALR 127 (296)
T ss_dssp HHHHHHHHH-HHHHHHTSHHHHHHH-HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHH
T ss_pred HHHHHHHHH-HHHHHHhChhhHHHH-HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHC-CCHH
Confidence 456788888 888888655554444 47899999999 99999999999999999999 6554 3788888876 8899
Q ss_pred HHHHHcc-C-CchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHH
Q 015728 238 EIISLVH-H-NSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDA 313 (401)
Q Consensus 238 ~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~ 313 (401)
+|+.+|+ + +..+++.|+++|.||+.+ +.+...+++.|++|+|+++|. +++..++..|+++|.+|+.. ++.+..
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---~~d~~v~~~A~~aLs~L~~~~~~~~~~ 204 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHKGT 204 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999995 3 567999999999999965 456778889999999999999 67889999999999999864 667777
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR 355 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (401)
++ +.|+|+.|++ ++++.++.+++.|+.+|.+|....+...
T Consensus 205 vv-~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 205 LC-SMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HH-HTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HH-HcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 76 8899999999 6778888999999999999998865444
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.7e-20 Score=188.54 Aligned_cols=280 Identities=10% Similarity=0.064 Sum_probs=214.7
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhcc-CCcccchhhhHHHHHHHHHHHHH
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFG-KAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s-~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
....+.+.|... +.+.+..|+..|..++... ..|..|++ .|++..|+.++++ .+. .+...++. ++.
T Consensus 335 La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~--------s~~Ygal~-IL~ 402 (778)
T 3opb_A 335 LSEIFINAISRR--IVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMT--------HCLYGLLV-IMA 402 (778)
T ss_dssp HHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCT--------THHHHHHH-HHH
T ss_pred HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCc--------hHHHHHHH-HHH
Confidence 344455555432 3345899999999998764 47788887 6779999999985 433 38888999 999
Q ss_pred hhcCCchh--------------------------------------hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728 172 LLLVGETE--------------------------------------SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE 213 (401)
Q Consensus 172 ~l~~~~~~--------------------------------------~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~ 213 (401)
|++...+. ++..+.++|+||.|+.+++++++.+|+.|+++|.
T Consensus 403 NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~ 482 (778)
T 3opb_A 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIY 482 (778)
T ss_dssp HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99863321 3456679999999999999999999999999999
Q ss_pred HHHhcccchhhhhhhhccchHHHHHHHHHccC-Cc---hhHHHHHHHHHHhcCCCchhHHHH--h-cCcHHHHHHHHHhh
Q 015728 214 VIISSSHETKELCCKLGKDDRLLREIISLVHH-NS---EASDAGVRAFSALCSTETNRKTLV--Q-EGAINGLIAYISNA 286 (401)
Q Consensus 214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~---~~~~~a~~aL~~Ls~~~~n~~~iv--~-~G~v~~Lv~lL~~~ 286 (401)
+| +.+. ++|..++.. |++++|+.+|.. .. +.+..|+.+|.+|....++...+- + .|+||+|++||..
T Consensus 483 nL-S~d~---~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~- 556 (778)
T 3opb_A 483 NI-TRSK---NFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR- 556 (778)
T ss_dssp HH-HTSG---GGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCC-
T ss_pred HH-cCCH---HHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCC-
Confidence 99 8776 899999885 889999999943 22 278999999999996555444331 1 4999999999982
Q ss_pred ccccc-------------hHHHHHHHHHHHHhCCH-----hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 287 LTRER-------------SLAAIAMARIEQLLAIE-----NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 287 ~~~~~-------------~~~~~a~~~L~~La~~~-----~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
+++. ..+..|+.+|.|||..+ +.|..++.+.|+++.|+.+ +.+.+..+++.|+.+++||+
T Consensus 557 -~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L-L~s~n~~VrrAA~elI~NL~ 634 (778)
T 3opb_A 557 -STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL-MLDENVPLQRSTLELISNMM 634 (778)
T ss_dssp -SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHH
T ss_pred -CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH-HhCCCHHHHHHHHHHHHHHh
Confidence 1111 12668999999999875 3477787445999999995 55667789999999999999
Q ss_pred cCCHHHH-HHHHHc------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728 349 CDSLQAR-EEAICA------GVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 349 ~~~~~~~-~~~~~~------g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
.+. +.+ +++... +.++.|+.|++++ +..+|+.|+++|..+...++
T Consensus 635 ~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 635 SHP-LTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp TSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCH
T ss_pred CCc-HHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCh
Confidence 864 433 244322 2488999999887 99999999999999964344
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.75 E-value=1.3e-18 Score=135.23 Aligned_cols=77 Identities=32% Similarity=0.466 Sum_probs=70.6
Q ss_pred cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQ 82 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 82 (401)
....++++|.||||+++|++||+++|||+||+.||.+|+. +..+||.|+.++....+.+|..++++|+.|+..++.+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 98 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTCC
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhhc
Confidence 3445789999999999999999999999999999999998 5788999999999889999999999999999988643
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.75 E-value=7.3e-19 Score=132.70 Aligned_cols=76 Identities=32% Similarity=0.442 Sum_probs=69.4
Q ss_pred ccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG 80 (401)
Q Consensus 4 ~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~ 80 (401)
.....++++|.||||+++|++||+++|||+||+.||.+|+. +..+||.|+..+....+.+|..++++|+.|++.++
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 34456889999999999999999999999999999999998 46789999999988899999999999999998774
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.74 E-value=3.2e-18 Score=132.44 Aligned_cols=78 Identities=32% Similarity=0.402 Sum_probs=70.9
Q ss_pred cCCCCCCcccccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQH 83 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~ 83 (401)
....++++|.||||+++|++||+++|| |+||+.||.+||.. ..+||.|+.++....+.+|..++++|+.|+..++...
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence 344578999999999999999999999 99999999999984 6789999999998899999999999999999986543
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.74 E-value=1.6e-18 Score=129.03 Aligned_cols=75 Identities=51% Similarity=0.931 Sum_probs=70.0
Q ss_pred CCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG 81 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 81 (401)
..++++|.||||+++|.+|++++|||+||+.||.+|+..+...||.|+..+....+.+|..++++|+.|++++|+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 457889999999999999999999999999999999986688899999999888899999999999999999975
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.68 E-value=4.4e-17 Score=138.89 Aligned_cols=77 Identities=30% Similarity=0.488 Sum_probs=70.7
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQ 82 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 82 (401)
...+|++|.||||+++|.+||+++|||+||+.||..|+..+..+||.|+.++....+.+|..++++|+.|+..+|..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 45689999999999999999999999999999999999875457999999998889999999999999999999753
No 44
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=119.58 Aligned_cols=77 Identities=27% Similarity=0.429 Sum_probs=67.9
Q ss_pred cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHc-CCCCCCCCcccC-CCCCCCCcHHHHHHHHHHHHhCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAA-GNLTCPVTMQTL-HDPSIVPNHTLRHLINQWLQMGGG 81 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~-~~~~~~~n~~l~~~i~~~~~~~~~ 81 (401)
....+++++.||||.++|.+|++++ |||+||..||.+|+.. +...||.|+..+ ....+.+|..+.++++.|+..++.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 3455788999999999999999999 9999999999999975 457899999997 456889999999999999987754
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=121.66 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=65.5
Q ss_pred CCCcccccccccccCCceEcC-ccccccHHhHHHHHHcC-----CCCCCC--Cccc-CCCCCCCCcHHHHHHHHHHHHhC
Q 015728 9 IPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAG-----NLTCPV--TMQT-LHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
.+++|.||||+++|.+||+++ |||+||+.||.+||..+ ..+||. |+.. +....+.+|..++++|+.|++.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 467899999999999999996 99999999999999853 468999 7766 77778999999999999999988
Q ss_pred CCC
Q 015728 80 GGQ 82 (401)
Q Consensus 80 ~~~ 82 (401)
+..
T Consensus 84 ~r~ 86 (94)
T 2yu4_A 84 HRH 86 (94)
T ss_dssp CSC
T ss_pred ccc
Confidence 644
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=3.1e-16 Score=145.82 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=70.8
Q ss_pred cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG 81 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 81 (401)
...+++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++++|+.|+..+|.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence 44567899999999999999999999999999999999997666699999999888899999999999999999875
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=1.2e-13 Score=138.45 Aligned_cols=285 Identities=12% Similarity=0.162 Sum_probs=209.2
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH-
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ- 170 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L- 170 (401)
.+-+..|..-|++ +.-.+.|+.|+..|+.++++ +|..+ .+++++.|+..|+....+ .+....++. +|
T Consensus 20 ~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D------~e~v~~~Le-tL~ 87 (651)
T 3grl_A 20 AETIQKLCDRVAS-STLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSD------SEIIGYALD-TLY 87 (651)
T ss_dssp HHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTC------HHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhccccc------HHHHHHHHH-HHH
Confidence 3666677666665 35689999999999999754 55554 567799999999876543 678888888 55
Q ss_pred HhhcCCchh----------------h-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch
Q 015728 171 KLLLVGETE----------------S-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD 233 (401)
Q Consensus 171 ~~l~~~~~~----------------~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~ 233 (401)
..++.++++ . -.++.+.+.|+.|+.+|++.+-.+|..+...|..| ....+ +.+.+.|..+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L-~~~r~-~~~Q~~Il~~p 165 (651)
T 3grl_A 88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSL-LKQLG-PQVQQIILVSP 165 (651)
T ss_dssp HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHSH-HHHHHHHHHST
T ss_pred HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHH-HhcCc-HHHHHHHHhCc
Confidence 445533321 1 12345678899999999999999999999999999 44331 24888888777
Q ss_pred HHHHHHHHHccCCc-hhHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhCCHh-
Q 015728 234 RLLREIISLVHHNS-EASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALT-RERSLAAIAMARIEQLLAIEN- 309 (401)
Q Consensus 234 g~i~~Lv~lL~~~~-~~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~- 309 (401)
++|+.||.+|+++. .++-.|+..|.+|+.+..+..+++. .|+++.|+.++...+. ....+.+.++.+|.+|...+.
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 88999999997654 4888899999999987776666655 6999999999985321 233688999999999998654
Q ss_pred hHHHHHhCCCcHHHHHHHHHhcCChh------HHHH---HHHHHHHHhcC------CHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 310 SKDALINNPNGVYALVKMVFRVSDHE------GSEN---AINSLMMICCD------SLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 310 ~~~~~~~~~g~i~~Lv~~l~~~~~~~------~~~~---a~~~L~~l~~~------~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
|+..+ ++.|+|+.|+. ++..++.. ...+ ++.++..|+.. +...+..+.+.|+++.|+.++.+.
T Consensus 246 NQ~~F-rEt~~i~~L~~-LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 246 NQNFF-KEGSYIQRMKP-WFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp HHHHH-HHTTCGGGGGG-GGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHH-HHcCCHHHHHH-HhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 66666 58899999999 56543321 1222 45555555554 235677899999999999998765
Q ss_pred C-CHHHHHHHHHHHHHHHH
Q 015728 375 C-SNRTKTKARMLLKLLRS 392 (401)
Q Consensus 375 ~-~~~~~~~A~~~L~~l~~ 392 (401)
+ ....+..|..++.-+.+
T Consensus 324 ~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 324 GVPADILTETINTVSEVIR 342 (651)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3 45677777777766554
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.54 E-value=7.3e-13 Score=132.90 Aligned_cols=284 Identities=10% Similarity=0.109 Sum_probs=212.6
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-----------------hhhHHH-hcCChHHHHHHhccCCccc
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-----------------ASNCLI-QLGFLPLLLKQLFGKAESK 153 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------~r~~i~-~~G~i~~Lv~lL~s~~~~~ 153 (401)
..+.+.+...|+....+.+.-+.++..|.++...++. +.+.+. +.+.|+.|+.+|.+.+.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df-- 136 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF-- 136 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--
Confidence 4567788888888888899999999999988865543 222333 47899999999988764
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCchh-hhh-hcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc
Q 015728 154 FSQVYVQFVEESLSCVQKLLLVGETE-SLN-LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK 231 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~L~~l~~~~~~-~~~-~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~ 231 (401)
.++.+++. +|..|+.+..+ ..+ ++..+++|+.|+.+|++....+|..+..+|.+| +..+ ..-++++.
T Consensus 137 ------~vR~~alq-lL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L-t~~n---~~iQklVA 205 (651)
T 3grl_A 137 ------HVRWPGVK-LLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL-TRSN---GAIQKIVA 205 (651)
T ss_dssp ------HHHHHHHH-HHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH-HTTC---HHHHHHHH
T ss_pred ------HHHHHHHH-HHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH-hcCC---HHHHHHHH
Confidence 48999999 88877755554 444 444679999999999999999999999999999 6665 44555555
Q ss_pred chHHHHHHHHHcc--C---CchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccc------hHHHH---
Q 015728 232 DDRLLREIISLVH--H---NSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRER------SLAAI--- 296 (401)
Q Consensus 232 ~~g~i~~Lv~lL~--~---~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~------~~~~~--- 296 (401)
.+|+++.|+.+++ + +..+...++.+|.||.. ++.|+..+.|.|++|.|..+|.. ++. ....+
T Consensus 206 FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~---~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 206 FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV---GDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC---CSCSSCCCHHHHHHHHH
T ss_pred HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC---CccccccHHHHHHHHHH
Confidence 5799999999992 2 23589999999999995 66699999999999999999973 221 12344
Q ss_pred HHHHHHHHhCC-------HhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcC------
Q 015728 297 AMARIEQLLAI-------ENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAG------ 362 (401)
Q Consensus 297 a~~~L~~La~~-------~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g------ 362 (401)
++.++..|... ..++.++. +.|+++.|+++++..+ ...++..|+.++..+..+++..+..+.+..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 66777777754 13556665 8899999999655443 456788899999999999988887777643
Q ss_pred ---cHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 363 ---VLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 363 ---~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.+..|+.++.+......|-.|...++-+-.
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 334455556555456778777776666554
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.53 E-value=6.8e-15 Score=119.47 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=62.5
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~~ 77 (401)
+.+++.||||.++|.+|++++|||+||..|+..|+..+...||.|+..+.. ..+.+|..+.++++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 356789999999999999999999999999999998666789999999977 678999999999998864
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=120.85 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=63.0
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-CCCCcHHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-SIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-~~~~n~~l~~~i~~~~~ 77 (401)
+++++.|+||.++|.+|++++|||+||..|+..|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999997667899999999877 88999999999998864
No 51
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=112.60 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=64.0
Q ss_pred CCCcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 9 IPHLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
+.+++.|+||+++|.+|++ ++|||+||..||.+|+......||.||..+....+..|..+..+++.+.+.+
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4568999999999999999 8999999999999999976578999999998888888988988888887766
No 52
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=110.94 Aligned_cols=69 Identities=23% Similarity=0.433 Sum_probs=62.9
Q ss_pred CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
.+++.|+||.+.|.+|+++ +|||+||..|+.+|+. ....||.|+..+....+.+|..+.++++.+++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 3568999999999999998 8999999999999998 5678999999998878999999999999998765
No 53
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1e-14 Score=110.09 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=58.3
Q ss_pred CCccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcC-----CCCCCCCcccCCCCCCCCcHHHHH
Q 015728 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG-----NLTCPVTMQTLHDPSIVPNHTLRH 70 (401)
Q Consensus 2 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~-----~~~CP~c~~~~~~~~~~~n~~l~~ 70 (401)
+......+.+++.|+||.+.+.+|+.++|||+||..|+..|+... ...||.|+..+....+.+|..+++
T Consensus 9 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 9 ASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred hHHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 344555678899999999999999999999999999999999862 678999999998877777765543
No 54
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-14 Score=108.69 Aligned_cols=69 Identities=23% Similarity=0.495 Sum_probs=58.0
Q ss_pred CCccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHc-----CCCCCCCCcccCCCCCCCCcHHHHH
Q 015728 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-----GNLTCPVTMQTLHDPSIVPNHTLRH 70 (401)
Q Consensus 2 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-----~~~~CP~c~~~~~~~~~~~n~~l~~ 70 (401)
+......+.+.+.|+||.+.+.+|+.++|||+||..|+..|+.. +...||.|+..+....+.+|..+++
T Consensus 9 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 9 ASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred hHHHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 33444567889999999999999999999999999999999885 3678999999998877777765543
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6e-14 Score=104.87 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHH
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l 68 (401)
.....+.+.|+||.+.|.+|++++|||+||..|+.+|+. ....||.|+..+. ..+.+|..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC-SCCEECHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc-ccCCcHHHH
Confidence 344567899999999999999999999999999999998 4678999999986 466777444
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-15 Score=110.69 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=56.0
Q ss_pred cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcC------CCCCCCCcccCCCCCCCCcHHHHH
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG------NLTCPVTMQTLHDPSIVPNHTLRH 70 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~------~~~CP~c~~~~~~~~~~~n~~l~~ 70 (401)
....+.+++.|+||.+.|.+|++++|||+||..|+.+|+... ...||.|+..+....+.+|..+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 345578899999999999999999999999999999998752 678999999998777777765543
No 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=98.24 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=50.0
Q ss_pred cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~ 61 (401)
....+++++.|+||.+.+.+|+.++|||+||..|+.+|+..+...||.|+..+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 344567899999999999999999999999999999999756778999999887654
No 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=1.1e-13 Score=109.49 Aligned_cols=68 Identities=18% Similarity=0.398 Sum_probs=59.7
Q ss_pred CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCC----CCCCcHHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP----SIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~----~~~~n~~l~~~i~~~~~ 77 (401)
+.+++.||||.++|.+|+++ +|||+||..|+..|+. ....||.|+..+... .+.+|..+.++++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 56789999999999999997 9999999999999998 457899999998765 56789999999887754
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=1.3e-13 Score=110.70 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=63.9
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQM 78 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~ 78 (401)
...+.+++.||||++.+.+|++++|||+||..|+.+|+..+...||.|+..+....+.++..+.+.+..+.-.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~ 84 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK 84 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeE
Confidence 3457789999999999999999999999999999999987666899999999887788899888888776543
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=1.2e-13 Score=110.86 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=61.4
Q ss_pred CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
.+++.||||.++|.+|+++ +|||+||..|+..|+. ..||.|+..+....+.+|..+.++++.+++..
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 4689999999999999999 9999999999999986 67999999998888999999999999987755
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.4e-13 Score=97.71 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCCCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n 65 (401)
...+.+++.|+||++.|.+|+++ +|||+||..|+.+|+.. ...||.|+..+...+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34577899999999999999997 99999999999999984 6789999999877655443
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.38 E-value=7e-14 Score=111.91 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC-------CCCCCcHHHHHHHHHHH
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-------PSIVPNHTLRHLINQWL 76 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-------~~~~~n~~l~~~i~~~~ 76 (401)
...+++.|+||.++|.+|++++|||+||..|+.+|+..+...||.|+..+.. ..+..|..+..+++.+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998667889999998763 45677888888887774
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=97.96 Aligned_cols=55 Identities=29% Similarity=0.436 Sum_probs=47.7
Q ss_pred cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD 59 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~ 59 (401)
....+++++.|+||+++|.+|++++ |||+||..||.+|+... ...||.|+..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3445778999999999999999999 99999999999999853 4789999997543
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.9e-13 Score=121.82 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=62.9
Q ss_pred CCCcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCC--CcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728 9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPV--TMQTLHDPSIVPNHTLRHLINQWLQM 78 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~--c~~~~~~~~~~~n~~l~~~i~~~~~~ 78 (401)
...+|+||||+++|++||+. .|||+||+.||..||.. +.+.||+ |+..+...++.+|..+.++++.|+.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 34689999999999999985 99999999999999985 3578999 99999888999999999999998764
No 65
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.6e-13 Score=97.02 Aligned_cols=56 Identities=25% Similarity=0.517 Sum_probs=48.9
Q ss_pred CCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCC
Q 015728 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSI 62 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~ 62 (401)
..+.+++.|+||.+.+.+|++++|||+||..|+.+|+.. +...||.|+..+...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 446789999999999999999999999999999999973 46789999998876543
No 66
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=2.8e-13 Score=107.83 Aligned_cols=68 Identities=21% Similarity=0.482 Sum_probs=57.1
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcC--CCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~ 77 (401)
.+.+.|+||.+.+.+|++++|||+||..|+..|+... ...||.|+..+....+.+|..+.++++.+.+
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999853 3689999999988777777666666665553
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.35 E-value=3e-13 Score=115.43 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=60.7
Q ss_pred CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHHHh
Q 015728 9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWLQM 78 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~~~ 78 (401)
+.+++.||||.+.|.+|+++ +|||+||..|+..|+..+...||.|+..+.. ..+.+|..+.++++.+...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 44678999999999999997 9999999999999999767889999999854 4688999999999998653
No 68
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=4.3e-13 Score=110.83 Aligned_cols=64 Identities=20% Similarity=0.493 Sum_probs=52.8
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL 76 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~ 76 (401)
.+++.||||.+.|.+|++++|||+||..|+..|+. ....||.||.++... ..+..+...++.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 45689999999999999999999999999999997 567899999988643 34566666666554
No 69
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=92.03 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCC
Q 015728 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVT 53 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c 53 (401)
..+.+++.||||++.+.+|++++|||+||..|+.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 447789999999999999999999999999999999985 46789987
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.31 E-value=1.5e-10 Score=102.20 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=150.9
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
.+.++.|+.+|.+++ +.++..|+. .|..+. ..+.++.|+..|++++..+|..|+.+|..+
T Consensus 18 ~~~~~~L~~~L~~~~--------~~vR~~A~~-~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS--------YYVRRAAAY-ALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GGGHHHHHHHTTCSS--------HHHHHHHHH-HHHHHC-----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCCC--------HHHHHHHHH-HHHHhC-----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 567999999998766 458999999 777543 135789999999999999999999999888
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
.. .+.++.|+.+|. +++.++..|+.+|.++.. .++++.|+++|. +++..++
T Consensus 78 -~~--------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr 129 (211)
T 3ltm_A 78 -GD--------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVR 129 (211)
T ss_dssp -CC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHH
T ss_pred -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHH
Confidence 31 256799999994 567799999999998853 368999999998 7888999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 295 ~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
..|+.+|..+. +...++.|++ ++++.++.++..|+.+|..+.. ..+++.|..+++++
T Consensus 130 ~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 130 IAAAFALGEIG-----------DERAVEPLIK-ALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG 186 (211)
T ss_dssp HHHHHHHHHHC-----------CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC
Confidence 99999999874 4568899999 5788888999999999999842 23567788889887
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015728 375 CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 375 ~~~~~~~~A~~~L~~l~~ 392 (401)
++.+|..|...|..+..
T Consensus 187 -~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 187 -TGFARKVAVNYLETHKS 203 (211)
T ss_dssp -CHHHHHHHHHHHHC---
T ss_pred -CHHHHHHHHHHHHhcCC
Confidence 89999999999999887
No 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.30 E-value=5.8e-13 Score=106.66 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=56.0
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC-CcHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV-PNHTLRHLINQWL 76 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~-~n~~l~~~i~~~~ 76 (401)
+.+++.||||.+.|.+|++++|||+||..|+.+|+..+...||.|+..+....+. ++..+..++..+.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999997677899999998766543 4556666655443
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.2e-12 Score=93.31 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=47.7
Q ss_pred Cccccccccc-ccCCc----eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728 11 HLFRCPISLD-LFTDP----VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 11 ~~~~C~iC~~-~~~~P----v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n 65 (401)
+++.||||.+ ++.+| +.++|||+||..|+.+|+..+...||.|+..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4688999999 99999 4679999999999999988777889999999987766543
No 73
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=95.43 Aligned_cols=57 Identities=28% Similarity=0.542 Sum_probs=49.4
Q ss_pred ccCCCCCCcccccccccccCC----ceEcCccccccHHhHHHHHHcC--CCCCCCCcccCCCC
Q 015728 4 DRQMTIPHLFRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQTLHDP 60 (401)
Q Consensus 4 ~~~~~~~~~~~C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~~~~~ 60 (401)
.....+.+.+.|+||.+.|.+ |+.++|||+||..|+.+|+... ...||.|+..+...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 344557789999999999999 9999999999999999999864 57899999987654
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.27 E-value=5e-13 Score=110.52 Aligned_cols=70 Identities=14% Similarity=0.298 Sum_probs=57.4
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC---------CCCCCcHHHHHHHHHHHH
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD---------PSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~---------~~~~~n~~l~~~i~~~~~ 77 (401)
.+.++|.||||.++|.+|++++|||+||+.||.+|+..+...||.|+..+.. ..+.++..+.+.+.++.-
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 4678899999999999999999999999999999998766789999986532 234577777777765443
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=110.88 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=62.1
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL 76 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~ 76 (401)
...++++|.||||.++|.+|++++|||+||..|+.+|+..+...||.|+..+....+.++..+.+.+.++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 34578899999999999999999999999999999999866668999999998877788888888777654
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.25 E-value=3.8e-10 Score=98.82 Aligned_cols=185 Identities=14% Similarity=0.151 Sum_probs=150.8
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
.+..+.++.+|.+++ +.++..|+. .|..+. ..+.++.|+..|++++..+|..|+.+|..+
T Consensus 13 ~~~~~~~i~~L~~~~--------~~vr~~A~~-~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS--------YYVRRAAAY-ALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHHHHHHTTCSC--------HHHHHHHHH-HHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCCC--------HHHHHHHHH-HHHhcC-----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 456889999999887 458999999 777543 135689999999999999999999999888
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
.. .++++.|+.+|. +++.++..|+++|.++.. .++++.|+++|. +++..++
T Consensus 73 -~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr 124 (201)
T 3ltj_A 73 -GD--------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVR 124 (201)
T ss_dssp -CC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHH
T ss_pred -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc---CCCHHHH
Confidence 31 246799999994 566799999999998753 358999999998 6888999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 295 ~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
..|+.+|..+. +.+.++.|++ ++++.++.++..|+.+|..+. ++ .+++.|..+++++
T Consensus 125 ~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 125 IAAAFALGEIG-----------DERAVEPLIK-ALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHHHHHT-----------CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC
Confidence 99999998874 4578899999 677888889999999999983 22 2567888888887
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015728 375 CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 375 ~~~~~~~~A~~~L~~l~~ 392 (401)
++.+|..|...|..+..
T Consensus 182 -~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 182 -TGFARKVAVNYLETHKS 198 (201)
T ss_dssp -CHHHHHHHHHHHHHCC-
T ss_pred -CHHHHHHHHHHHHHHHh
Confidence 89999999999987654
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.2e-12 Score=87.00 Aligned_cols=48 Identities=21% Similarity=0.609 Sum_probs=42.4
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVT 53 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c 53 (401)
...+.+++.|+||++.+.+|+.++|||+||..|+.+|+.. +...||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3446788999999999999999999999999999999764 56789987
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=4.6e-12 Score=91.92 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCCCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728 8 TIPHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n 65 (401)
...+++.|+||.+.+.+| +.++|||+||..|+.+|+.. ...||.|+..+....+.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 356789999999999998 88999999999999999984 4689999999987766553
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.3e-12 Score=90.87 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..+++.|+||++.+.+|+.++|||.||..|+.+|+. ....||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 456789999999999999999999999999999987 45789999988754
No 80
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=1.4e-09 Score=100.21 Aligned_cols=223 Identities=11% Similarity=-0.006 Sum_probs=151.5
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
.+..|.+.|.+ +++..+..|+..|..+. ..+.++.|+.+|.+++ +.++..|++ .|..+
T Consensus 24 ~i~~L~~~L~~--~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~--------~~vR~~A~~-aL~~l 81 (280)
T 1oyz_A 24 NDDELFRLLDD--HNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKN--------YIRRDIGAF-ILGQI 81 (280)
T ss_dssp CHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSS--------HHHHHHHHH-HHHHS
T ss_pred hHHHHHHHHHc--CCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCC--------HHHHHHHHH-HHHHh
Confidence 46677776753 46788899999998775 1346899999998776 458999999 88776
Q ss_pred cCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728 174 LVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD 251 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 251 (401)
........ ..++.|.. ++++++..+|..++.+|.++ ..... . ....+++.|+.+|. ++..++.
T Consensus 82 ~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l-~~~~~--~------~~~~~~~~L~~~l~d~~~~vR~ 146 (280)
T 1oyz_A 82 KICKKCED------NVFNILNNMALNDKSACVRATAIESTAQR-CKKNP--I------YSPKIVEQSQITAFDKSTNVRR 146 (280)
T ss_dssp CCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HHHCG--G------GHHHHHHHHHHHTTCSCHHHHH
T ss_pred ccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hccCC--c------ccHHHHHHHHHHhhCCCHHHHH
Confidence 53221111 12334442 45677889999999999998 43210 0 01257889999884 5667899
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
.|+.+|.++.. .+++|.|+++|. +++..++..|+.+|..+... ...+++.|++ ++++
T Consensus 147 ~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~-~l~d 203 (280)
T 1oyz_A 147 ATAFAISVIND----------KATIPLLINLLK---DPNGDVRNWAAFAININKYD---------NSDIRDCFVE-MLQD 203 (280)
T ss_dssp HHHHHHHTC-------------CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHH-HTTC
T ss_pred HHHHHHHhcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHhhccC---------cHHHHHHHHH-HhcC
Confidence 99999988753 358999999998 67788999999999887421 2346777888 5677
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
.++.++..|+.+|..+.. ..+++.|+.+++++ + +|..|..+|..+
T Consensus 204 ~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGEL 248 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhc
Confidence 777888888888877641 23555566665543 2 555555555544
No 81
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=1.3e-09 Score=96.21 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=148.8
Q ss_pred ChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 91 TIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 91 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
+++.+..|.+.|. +.+...+..|+..|..+.. .++++.|+.+|.+++ +.++..|+. .|
T Consensus 17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~--------~~vr~~a~~-aL 74 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED--------AWVRRAAAD-AL 74 (211)
T ss_dssp CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC--------HHHHHHHHH-HH
T ss_pred CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC--------HHHHHHHHH-HH
Confidence 3567888888786 4578899999999887532 367999999998765 459999999 77
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchh
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEA 249 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~ 249 (401)
..+. ..+.++.|+..|++++..+|..|+.+|..+ .. .++++.|+.+|+ ++..+
T Consensus 75 ~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~~--------------~~~~~~L~~~l~d~~~~v 128 (211)
T 3ltm_A 75 GQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD--------------ERAVEPLIKALKDEDWFV 128 (211)
T ss_dssp HHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC--------------GGGHHHHHHHTTCSSHHH
T ss_pred HhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc--------------HHHHHHHHHHHhCCCHHH
Confidence 7653 235689999999999999999999999888 32 246799999994 56679
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+..|+.+|.++.. ..+++.|+++|. +++..++..|+.+|..+. ...+++.|.+ ++
T Consensus 129 r~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~-~l 183 (211)
T 3ltm_A 129 RIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEIG-----------GERVRAAMEK-LA 183 (211)
T ss_dssp HHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-----------SHHHHHHHHH-HH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------chhHHHHHHH-HH
Confidence 9999999998853 358999999998 788899999999999884 3457788888 57
Q ss_pred hcCChhHHHHHHHHHHHHhcCC
Q 015728 330 RVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
+++++.++..|..+|..+....
T Consensus 184 ~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 184 ETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHCCHHHHHHHHHHHHC-----
T ss_pred hCCCHHHHHHHHHHHHhcCCCC
Confidence 7788899999999999887654
No 82
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=89.32 Aligned_cols=52 Identities=19% Similarity=0.426 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 7 MTIPHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..+.+.+.|+||++.+.+| +.++|||.||..|+.+|+.. ...||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4467789999999999988 88999999999999999985 6789999988764
No 83
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.17 E-value=2.2e-11 Score=89.60 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccC--CceEcC--ccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728 7 MTIPHLFRCPISLDLFT--DPVTLC--TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~--~Pv~~~--Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~ 61 (401)
..+.+++.||||.+.+. ++...+ |||+||+.|+.+++..+...||.||+.+....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34678999999999884 455555 99999999999998766788999999987653
No 84
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.16 E-value=7.8e-12 Score=87.38 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred cccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcH
Q 015728 12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~ 66 (401)
.|.||||+++|.+||.+ +|||+||+.||++|+.. ..+||.++.++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 89999999999999985 35699999999877776653
No 85
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=3.2e-11 Score=89.15 Aligned_cols=58 Identities=21% Similarity=0.408 Sum_probs=47.7
Q ss_pred CCCCCcccccccccccCCc---eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728 7 MTIPHLFRCPISLDLFTDP---VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~P---v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n 65 (401)
....+++.|+||++.|.+| +.++|||.||..|+.+|+. ....||.||..+....+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCCC
Confidence 3456789999999999876 3469999999999999997 55789999999877655543
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.14 E-value=1.9e-09 Score=99.33 Aligned_cols=200 Identities=9% Similarity=0.033 Sum_probs=151.7
Q ss_pred HHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHH
Q 015728 133 LIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLV 212 (401)
Q Consensus 133 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L 212 (401)
+.+.+.++.|+..|.+++ +.++..|++ .|..+. ..+.++.|+.+|++++..+|..|+.+|
T Consensus 19 ~~~~~~i~~L~~~L~~~~--------~~vr~~A~~-~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL 78 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN--------SLKRISSAR-VLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFIL 78 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS--------HHHHHHHHH-HHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHcCC--------HHHHHHHHH-HHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345778999999998766 458999999 888664 134688999999999999999999999
Q ss_pred HHHHhcccchhhhhhhhccchHHHHHHHHH-c-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc
Q 015728 213 EVIISSSHETKELCCKLGKDDRLLREIISL-V-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE 290 (401)
Q Consensus 213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l-L-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~ 290 (401)
..+ .... . .+ ..+++.|... + +++..++..++++|.++...... ....+++.|+.+|. +++
T Consensus 79 ~~l-~~~~---~---~~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~---d~~ 141 (280)
T 1oyz_A 79 GQI-KICK---K---CE---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAF---DKS 141 (280)
T ss_dssp HHS-CCCT---T---TH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTT---CSC
T ss_pred HHh-cccc---c---cc---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhh---CCC
Confidence 888 5332 1 11 1345555543 3 45667999999999998742211 12346899999998 788
Q ss_pred chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL 370 (401)
Q Consensus 291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 370 (401)
..++..|+.+|..+. +.++++.|++ ++++.++.++..|+.+|..+...++ .+++.|+.+
T Consensus 142 ~~vR~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~ 200 (280)
T 1oyz_A 142 TNVRRATAFAISVIN-----------DKATIPLLIN-LLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHHHHTC--------------CCHHHHHH-HHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHH
Confidence 899999999998764 3468999999 5788888899999999999864433 356788899
Q ss_pred hhcCCCHHHHHHHHHHHHHHH
Q 015728 371 LQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 371 l~~~~~~~~~~~A~~~L~~l~ 391 (401)
++++ ++.+|..|...|..+.
T Consensus 201 l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 201 LQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp TTCS-CHHHHHHHHHHHHHTT
T ss_pred hcCC-CHHHHHHHHHHHHHhC
Confidence 9877 8999999999998765
No 87
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.14 E-value=4.7e-09 Score=91.76 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=148.7
Q ss_pred CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
+..+.....+.+.|.+ .++..+..|+..|..+.. .+.++.|+.+|.+++ +.++..|+.
T Consensus 10 ~~~~~~~~~~i~~L~~--~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~--------~~vr~~a~~- 67 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD--DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED--------AWVRRAAAD- 67 (201)
T ss_dssp CCCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS--------HHHHHHHHH-
T ss_pred ccCCcchHHHHHHhcC--CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC--------HHHHHHHHH-
Confidence 4556777777777763 467899999999886542 357899999998765 458999998
Q ss_pred HHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc
Q 015728 169 VQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS 247 (401)
Q Consensus 169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~ 247 (401)
.|..+. ....++.|+..|.+++..+|..|+.+|..+ .. ..+++.|+.+|+ ++.
T Consensus 68 ~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~--------------~~~~~~L~~~l~d~~~ 121 (201)
T 3ltj_A 68 ALGQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD--------------ERAVEPLIKALKDEDW 121 (201)
T ss_dssp HHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC--------------GGGHHHHHHHTTCSSH
T ss_pred HHHhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc--------------HHHHHHHHHHHcCCCH
Confidence 777653 235689999999999999999999999888 32 246789999994 566
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHH
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKM 327 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~ 327 (401)
.++..|+++|.++.. .++++.|+++|. +++..++..|+.+|..+. ...+++.|.+
T Consensus 122 ~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~-----------~~~~~~~L~~- 176 (201)
T 3ltj_A 122 FVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEIG-----------GERVRAAMEK- 176 (201)
T ss_dssp HHHHHHHHHHHHHTC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-----------SHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------chhHHHHHHH-
Confidence 799999999998853 468999999998 678899999999999883 3457888888
Q ss_pred HHhcCChhHHHHHHHHHHHHh
Q 015728 328 VFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L~~l~ 348 (401)
++++.++.++..|+.+|..+-
T Consensus 177 ~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 177 LAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHCCHHHHHHHHHHHHHCC
T ss_pred HHhCCCHHHHHHHHHHHHHHH
Confidence 567788889999999998763
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.3e-11 Score=87.52 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=45.9
Q ss_pred CcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728 11 HLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~ 64 (401)
+++.|+||.+.+.+| +.++|||.||..|+.+|+.. ...||.|+..+...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence 468899999999988 78899999999999999985 678999999987765443
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=2.5e-09 Score=111.27 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=145.3
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH-HHc-cCCchhHHHHHHHHHHhcC--C
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII-SLV-HHNSEASDAGVRAFSALCS--T 263 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv-~lL-~~~~~~~~~a~~aL~~Ls~--~ 263 (401)
..|.++++.|++++++.|..|+.+|.+| ..+. +.+..+... |+|.+++ .+| +.+.+++.+|+++|+||+. .
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l-~~~~---~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANI-VQDA---KCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHH-TTSH---HHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHH-HcCc---HHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3577888999999999999999999999 6654 677777665 6666655 466 4677899999999999995 4
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhcc--------cc----------chHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHH
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALT--------RE----------RSLAAIAMARIEQLLAI-ENSKDALINNPNGVYAL 324 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~--------~~----------~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~L 324 (401)
.+.+..+++.|++++|..+|..... .+ .++.++++.+|.+||.. .+....+. ..++++.|
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l 187 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRL 187 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHH
Confidence 5678999999999999999863100 00 12445688899999964 44555665 78999999
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh--hcCCCHHHHHHHHHHHHHHH
Q 015728 325 VKMVFRVS--DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL--QSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 325 v~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--~~~~~~~~~~~A~~~L~~l~ 391 (401)
+..+.... .......|+.+|..++.++++..+.+...|....+..++ ..+ +...|..++++|..+.
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 99765443 346888999999999999888887888877543322222 233 4445666777776654
No 90
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.8e-11 Score=82.12 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.+++.|+||.+.|.+|++++|||+||..|+.. ....||.|+..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 46789999999999999999999999999976 356799999987643
No 91
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=3.2e-10 Score=81.59 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=43.1
Q ss_pred CCCCcccccccccccC---CceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 8 TIPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
...++..|+||++.|. .++.++|||.||..|+.+|+.. ...||.|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 3556789999999884 4567899999999999999985 45799999987653
No 92
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.5e-10 Score=83.12 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=41.8
Q ss_pred CcccccccccccCCc-eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
++..|+||.+.+.+| +.++|||.||..|+.+|+.. ...||.|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456899999999997 66899999999999999984 5789999988753
No 93
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=87.18 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=43.5
Q ss_pred CCCcccccccccccCC---ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 9 IPHLFRCPISLDLFTD---PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~---Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..++..|+||++.|.+ ++.++|||.||..|+..|+. ....||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 3467899999999887 77789999999999999998 56789999988764
No 94
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=2.1e-10 Score=78.59 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=40.8
Q ss_pred CcccccccccccCC----ceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
++..|+||++.+.+ ++.++|||.||..|+.+|+... ..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999866 7778999999999999999855 78999998764
No 95
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=78.77 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=42.2
Q ss_pred CCCcccccccccccCC---ceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 9 IPHLFRCPISLDLFTD---PVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~---Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
+.++..|+||++.+.+ ++.++ |||.||..|+.+|+. ....||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 4567889999999988 77887 999999999999997 5678999998763
No 96
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.3e-11 Score=84.70 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.+.+.+.|+||++.+.+ +.++|||.||..|+.+|+. ....||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 45678999999999999 8899999999999999987 678899999988654
No 97
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.9e-10 Score=82.32 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=44.1
Q ss_pred CCCCCcccccccccccCCceEc---CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 7 MTIPHLFRCPISLDLFTDPVTL---CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.++.++..|+||++.|.+|..+ +|||.||..|+.+|+.. ...||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3466788999999999877654 99999999999999985 4589999998754
No 98
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.98 E-value=1e-08 Score=109.45 Aligned_cols=282 Identities=11% Similarity=0.118 Sum_probs=180.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhh--HHH--hcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASN--CLI--QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~--~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
+.+..+.+.+.+ ++...+..|+..|..++...+..-. .+. -.+.+|.|+.++.+.+ .+++..|+.
T Consensus 128 ~ll~~L~~~l~~--~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--------~~vR~~A~~- 196 (852)
T 4fdd_A 128 DLLPKLCSLLDS--EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS--------PKIRSHAVA- 196 (852)
T ss_dssp THHHHHHHHHSC--SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS--------HHHHHHHHH-
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC--------HHHHHHHHH-
Confidence 456666665653 3567889999999999976543211 000 1235677777776554 569999999
Q ss_pred HHHhhcCCchhh-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC
Q 015728 169 VQKLLLVGETES-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN 246 (401)
Q Consensus 169 ~L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~ 246 (401)
.+..+....... ...+ ...++.+...+.+++.++|..++.+|..+ ..... +.....+ .++++.++.+++ .+
T Consensus 197 aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l-~~~~~-~~~~~~l---~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 197 CVNQFIISRTQALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVML-LEVRM-DRLLPHM---HNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHH-HHHCH-HHHGGGH---HHHHHHHHHHHTCSS
T ss_pred HHHHHHhcccHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHhCH-HHHHHHH---HHHHHHHHHHccCCc
Confidence 777665433221 1111 24678888888888999999999999999 43321 1222222 357777777774 45
Q ss_pred chhHHHHHHHHHHhcCCCchhHH-------------------------------------------------------HH
Q 015728 247 SEASDAGVRAFSALCSTETNRKT-------------------------------------------------------LV 271 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n~~~-------------------------------------------------------iv 271 (401)
..++..|+.++..++.....+.. +.
T Consensus 270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 56888888888877643211110 00
Q ss_pred ---hcC----cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 272 ---QEG----AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 272 ---~~G----~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
... ++|.+.+++. +.+..+++.|+.+|..++........-. -.+.++.++. ++++.++.++..|+.+|
T Consensus 350 ~~~~~~~~~~l~~~l~~~l~---~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~-~l~d~~~~Vr~~a~~~l 424 (852)
T 4fdd_A 350 NVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQ-CLSDKKALVRSITCWTL 424 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 011 2333333444 4567788888888888886543322111 2357788888 56778889999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 345 MMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 345 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
.+++...+.......-.+.++.|+..++++ ++.+|+.|.++|..+.+..+.++
T Consensus 425 ~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l 477 (852)
T 4fdd_A 425 SRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTEL 477 (852)
T ss_dssp HHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhh
Confidence 998864221111122346778888888777 89999999999999998666554
No 99
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=3e-10 Score=83.19 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=42.7
Q ss_pred CCcccccccccccCCc---eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDP---VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~P---v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.++..|+||++.|.++ +.++|||.||..|+.+|+.. ...||.||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4578899999999887 66899999999999999984 5689999988764
No 100
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=2e-10 Score=93.98 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=46.5
Q ss_pred CCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728 10 PHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~ 63 (401)
.+++.|+||++.|.+| +.++|||+||..||.+|+. ....||.|+..+....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcccccc
Confidence 4678999999999999 8899999999999999998 556899999998765443
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=1.9e-08 Score=104.64 Aligned_cols=196 Identities=12% Similarity=0.096 Sum_probs=140.8
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHH
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~ 216 (401)
.|.++++.|+|++.. .+..|++ +|.+|+.+ ...++.+...|+|..++. +|...+.++++.|+.+|.+|
T Consensus 35 ~i~Pll~~L~S~~~~--------~r~~A~~-al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL- 103 (684)
T 4gmo_A 35 KILPVLKDLKSPDAK--------SRTTAAG-AIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL- 103 (684)
T ss_dssp TTHHHHHHHSSSCCS--------HHHHHHH-HHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHcCCCCHH--------HHHHHHH-HHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence 466677889988865 8999999 99999964 455556657788887665 67778999999999999999
Q ss_pred hcccchhhhhhhhccchHHHHHHHHHccCC----------------------chhHHHHHHHHHHhcC-CCchhHHHHhc
Q 015728 217 SSSHETKELCCKLGKDDRLLREIISLVHHN----------------------SEASDAGVRAFSALCS-TETNRKTLVQE 273 (401)
Q Consensus 217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----------------------~~~~~~a~~aL~~Ls~-~~~n~~~iv~~ 273 (401)
+... ..+.+..+... |++++|..+|+.. .....++..+|++||. .++....+.+.
T Consensus 104 ~~~~-g~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~ 181 (684)
T 4gmo_A 104 AQEE-EADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK 181 (684)
T ss_dssp HHHS-CHHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC
T ss_pred Hhhc-CchHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 6553 23777777775 8999999988210 0133467889999995 55567788899
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcH---HHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGV---YALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i---~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
|+++.|+.+|.+......+++..|+.+|+.|+.+...-...+.+.|.. ..+.. +.+..+ ..+..++.+|.|+.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSC-TTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCc-HHHHHHHHHHHhHh
Confidence 999999999964212345789999999999998755444433355532 23333 334444 45667888999874
No 102
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.89 E-value=4.4e-08 Score=104.48 Aligned_cols=266 Identities=15% Similarity=0.133 Sum_probs=175.3
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhh--hh
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESL--NL 183 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~--~~ 183 (401)
+.++..|..+...+..+++.+.... -.+.++.|+..+.+++. .+++.++. +|..++.+..... ..
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~~~~~--------~~r~~al~-~L~~i~~~~~~~~~~~~ 167 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLDSEDY--------NTCEGAFG-ALQKICEDSAEILDSDV 167 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHSCSSH--------HHHHHHHH-HHHHHHHHHTTHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHcCCCH--------HHHHHHHH-HHHHHHHHhHHHhchhh
Confidence 3466789999999999998763221 14579999999988763 48888888 7777763222111 01
Q ss_pred cc--cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHh
Q 015728 184 LN--EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSAL 260 (401)
Q Consensus 184 v~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~L 260 (401)
+. -...++.++..+++.+.++|..|+.+|..+ ..... +.... ...++++.|..++. ++..+++.|.++|.+|
T Consensus 168 ~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~-~~~~~-~~~~~---~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 168 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF-IISRT-QALML---HIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTT-TTTTC-HHHHT---SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-Hhccc-HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 10 123577777888888999999999999887 33221 11111 22367888888884 5667999999999999
Q ss_pred cCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHH-------H-----------------
Q 015728 261 CSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL-------I----------------- 315 (401)
Q Consensus 261 s~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~-------~----------------- 315 (401)
+.... .-...+ .+.++.++.++. +.++.++..|+..+..++.....+..+ +
T Consensus 243 ~~~~~~~~~~~l-~~l~~~l~~~~~---~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 243 LEVRMDRLLPHM-HNIVEYMLQRTQ---DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHCHHHHGGGH-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHhCHHHHHHHH-HHHHHHHHHHcc---CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 85332 111111 247777887777 567778888888888777532111100 0
Q ss_pred -hC--------------------------------C----CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 015728 316 -NN--------------------------------P----NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEA 358 (401)
Q Consensus 316 -~~--------------------------------~----g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 358 (401)
.+ . ..++.+.+ ++++.+...++.|+.+|.+++....+... -
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~ 396 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMI-P 396 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHG-G
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcchHHHH-H
Confidence 00 0 12333333 34556677888888888888876543221 2
Q ss_pred HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 359 ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 359 ~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.-.+.++.|+.++++. ++.+|..|.+.|..+.+..++
T Consensus 397 ~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcc
Confidence 3456788999999777 999999999999999986554
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.88 E-value=1.3e-09 Score=86.74 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=41.5
Q ss_pred CcccccccccccCCce------------------EcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPV------------------TLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv------------------~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
++..|+||++.|.+|. .++|||.||..||..|+.. ....||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999998765 6789999999999999963 46789999988754
No 104
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=5.8e-10 Score=81.37 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 457899999999999999999999 999999877 579999998764
No 105
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.80 E-value=8.2e-08 Score=94.26 Aligned_cols=287 Identities=11% Similarity=0.066 Sum_probs=180.3
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+.+..+.+.+.+.+++...+..|+..|..++... +..-... -...++.++.+|.+.... ..++..|+. ++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~------~~vr~~a~~-~l~ 199 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPS------NNVKLAATN-ALL 199 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCC------HHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCC------HHHHHHHHH-HHH
Confidence 4566666666532115788999999999999764 2111111 134688888988776311 568999999 666
Q ss_pred hhcCC-chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchh
Q 015728 172 LLLVG-ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEA 249 (401)
Q Consensus 172 ~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~ 249 (401)
.+... .++........-.++.+...+.+++.+++..++.+|..+..... +.....+.. ++++.++..+ +.+..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~--~l~~~~~~~~~~~~~~v 275 (462)
T 1ibr_B 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP--ALFAITIEAMKSDIDEV 275 (462)
T ss_dssp HHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT--THHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHcCCchHH
Confidence 54321 11111000001125556666777888999999999999933222 122333321 5778777777 445668
Q ss_pred HHHHHHHHHHhcCCCc------------------hhHHHHh---cCcHHHHHHHHHhh----ccccchHHHHHHHHHHHH
Q 015728 250 SDAGVRAFSALCSTET------------------NRKTLVQ---EGAINGLIAYISNA----LTRERSLAAIAMARIEQL 304 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~------------------n~~~iv~---~G~v~~Lv~lL~~~----~~~~~~~~~~a~~~L~~L 304 (401)
+..|..++..++.... ....+++ ...+|.+++.|... .+.+..++..|..+|..|
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 9999999888875421 0111221 33667777777521 012336788899999988
Q ss_pred hCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728 305 LAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKA 383 (401)
Q Consensus 305 a~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A 383 (401)
+..-.. .+. ...++.+.+ .+++.+...++.|+.+|..++.+.. +.... .-..+++.|+.+++++ .+.+|..|
T Consensus 356 ~~~~~~--~~~--~~~~~~l~~-~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a 428 (462)
T 1ibr_B 356 ATCCED--DIV--PHVLPFIKE-HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTA 428 (462)
T ss_dssp HHHTTT--THH--HHHHHHHHH-HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHH
T ss_pred HHhccH--HHH--HHHHHHHHH-HhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 853221 221 134555666 5667788899999999999987532 11111 1257889999999887 89999999
Q ss_pred HHHHHHHHHhhHHhh
Q 015728 384 RMLLKLLRSKWAEEL 398 (401)
Q Consensus 384 ~~~L~~l~~~~~e~~ 398 (401)
.++|..+.+..+.++
T Consensus 429 ~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 429 AWTVGRICELLPEAA 443 (462)
T ss_dssp HHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHhccccc
Confidence 999999999766543
No 106
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=4.2e-09 Score=99.98 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=44.2
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
...|+||.+.+.+|+.++|||.||..|+..|+..+...||.||..+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999999999999999999999999986677899999987653
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.76 E-value=3.7e-07 Score=92.48 Aligned_cols=268 Identities=11% Similarity=0.113 Sum_probs=178.4
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..+..++. +.+...+..|...|.+++...+.. . ...-.+|.+..+..+.+ ..++..|+. ++..
T Consensus 87 ~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~--------~~~R~~a~~-~l~~ 152 (588)
T 1b3u_A 87 CLLPPLESLAT--VEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDW--------FTSRTSACG-LFSV 152 (588)
T ss_dssp GGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSS--------HHHHHHHGG-GHHH
T ss_pred HHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCC--------cHHHHHHHH-HHHH
Confidence 34555544332 346789999999999999876542 1 12334677777666554 347777777 7777
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 251 (401)
+...-... . ....++.+..++++++..+|..|+.+|..+ ..... . ... . ..++|.|..++. ++..++.
T Consensus 153 ~~~~~~~~---~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l-~~~~~--~--~~~-~-~~l~~~l~~~~~d~~~~vr~ 221 (588)
T 1b3u_A 153 CYPRVSSA---V-KAELRQYFRNLCSDDTPMVRRAAASKLGEF-AKVLE--L--DNV-K-SEIIPMFSNLASDEQDSVRL 221 (588)
T ss_dssp HTTTSCHH---H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-HHTSC--H--HHH-H-HTHHHHHHHHHTCSCHHHHT
T ss_pred HHHhcCHH---H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHhc--H--HhH-H-HHHHHHHHHHhcCCcHHHHH
Confidence 66332211 1 123577777888888999999999999999 54321 1 111 1 257788888884 4556899
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
.|+.+|..++..-+.. .....++|.+..++. +.+..++..++.+|..++...... .+ ....++.+++ ++++
T Consensus 222 ~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~l~~~l~~-~l~d 292 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQE--DLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPE-IT--KTDLVPAFQN-LMKD 292 (588)
T ss_dssp THHHHHHHHHHHSCHH--HHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHH-HH--HHTHHHHHHH-HHTC
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCcc-cc--hhHHHHHHHH-HhCC
Confidence 9999999988532221 223447888888887 677889999999999988532111 11 2246888888 5777
Q ss_pred CChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728 332 SDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
.++.++..|+.+|..++...+ +.+........++.+..++++. +..+|..|.+.|..+.+..+
T Consensus 293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999886532 2121233445667777777666 77888888777777665443
No 108
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.76 E-value=4.9e-07 Score=91.54 Aligned_cols=215 Identities=11% Similarity=0.047 Sum_probs=142.8
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+.++..|..|+..|..++...... ......+|.|..++.+.+ ..++..|+. .|..++..-+. . ..
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~--------~~vr~~a~~-~l~~l~~~~~~-~-~~- 239 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQ--------DSVRLLAVE-ACVNIAQLLPQ-E-DL- 239 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSC--------HHHHTTHHH-HHHHHHHHSCH-H-HH-
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCc--------HHHHHHHHH-HHHHHHHhCCH-H-HH-
Confidence 356888999999999998765432 223567889999887765 348888888 66665522111 0 11
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~ 264 (401)
....+|.+..++++.+..+|..++.+|..+ ..... . ..+ . ..+++.++.+++ ++..++..|+.+|..++..-
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l-~~~~~--~--~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTEL-QKAVG--P--EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHH-HHHHC--H--HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHHhC--c--ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 123577788888888899999999999999 43210 1 111 1 246889999995 45679999999999988432
Q ss_pred c--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728 265 T--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAIN 342 (401)
Q Consensus 265 ~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~ 342 (401)
. .+....-...+|.+..++. +.+..++..++.+|..++..-... .. ....+|.+.. ++++.++.++..++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~l~p~l~~-~l~d~~~~Vr~~a~~ 385 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVS---DANQHVKSALASVIMGLSPILGKD-NT--IEHLLPLFLA-QLKDECPEVRLNIIS 385 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHT---CSCHHHHHHHHTTGGGGHHHHCHH-HH--HHHTHHHHHH-HHTCSCHHHHHHHHT
T ss_pred ChhhhhhHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhhHh-HH--HHHHHHHHHH-HhCCCchHHHHHHHH
Confidence 2 2222233467888888888 677888888888888877432111 11 1235666777 466666677777777
Q ss_pred HHHHHhc
Q 015728 343 SLMMICC 349 (401)
Q Consensus 343 ~L~~l~~ 349 (401)
+|..++.
T Consensus 386 ~l~~l~~ 392 (588)
T 1b3u_A 386 NLDCVNE 392 (588)
T ss_dssp TCHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 109
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.74 E-value=3.8e-09 Score=110.06 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCCCCCcccccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG 81 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 81 (401)
..++|++|.|||..++|+|||+++.| +||.+.+|++|+.. ..+||..+.+++...+.||..++..|+.|+..++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998 69999999999985 67899999999988999999999999999987743
No 110
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4e-09 Score=77.07 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.+++.|+||++.+.+|+.++|||. ||..|+.+ ...||.||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 456789999999999999999999 99999964 3679999998865
No 111
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=2.7e-09 Score=81.72 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=39.3
Q ss_pred CcccccccccccCCceEc---CccccccHHhHHHHHHc----C---CCCCCC--Cccc
Q 015728 11 HLFRCPISLDLFTDPVTL---CTGQTYDRSSIEKWLAA----G---NLTCPV--TMQT 56 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~----~---~~~CP~--c~~~ 56 (401)
+.+.|+||.+.+.+|+.+ +|||.||..|+..|+.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999998764 69999999999999874 2 357999 9887
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=3.1e-09 Score=86.70 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=46.3
Q ss_pred CCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728 10 PHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~ 64 (401)
.+.+.|+||++.+.+| +.++|||.||..|+.+|+. ..++||.|+..+..+++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChhccee
Confidence 4678999999999887 8889999999999999998 4568999999987655443
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=76.08 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=39.8
Q ss_pred CcccccccccccCC--------------ceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTD--------------PVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~--------------Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
++-.|+||++.|.+ ++.+ +|||.|+..||.+|+. ...+||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 45679999999977 4455 5999999999999998 45689999988754
No 114
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.65 E-value=2e-08 Score=70.84 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=42.3
Q ss_pred CCcccccccccccCCceEc--Ccccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTDPVTL--CTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~--~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.++..|+||++.+.+++.+ +|||. ||..|+.+|+. ....||.||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 4567899999999999987 99999 89999999987 5678999999875
No 115
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.61 E-value=5.5e-07 Score=92.08 Aligned_cols=266 Identities=11% Similarity=0.120 Sum_probs=177.9
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE 177 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~ 177 (401)
+.++|. +.++..|..|+..+.++.+.+++ .+.+.|.++.|..+|.+.+ +.++..|+. +|..++.++
T Consensus 126 l~~~L~--d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d--------~~V~~~A~~-aL~~i~~~~ 191 (591)
T 2vgl_B 126 LRKCLK--DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSN--------PMVVANAVA-ALSEISESH 191 (591)
T ss_dssp HHHHSS--CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSC--------HHHHHHHHH-HHHHHTTSC
T ss_pred HHHHcC--CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCC--------hhHHHHHHH-HHHHHHhhC
Confidence 555554 45788999999999999987764 3334678999999998766 459999999 888887654
Q ss_pred hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHH
Q 015728 178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRA 256 (401)
Q Consensus 178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~a 256 (401)
.+........+.+..|+..+...++-.+.....+|..+ ...+ + .. ...+++.+..+|+ .+..++..|+++
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l-~~~~---~--~~---~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY-NPKD---D--RE---AQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS-CCCS---H--HH---HHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh-CCCC---h--HH---HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33211111234577888888888888887777777666 4322 1 11 1357788888884 567799999999
Q ss_pred HHHhcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hh------------------h-HH
Q 015728 257 FSALCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-EN------------------S-KD 312 (401)
Q Consensus 257 L~~Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~------------------~-~~ 312 (401)
+.++.. +++....++ ..++++|+.++. ++..++-.|+.+|..++.. ++ - +.
T Consensus 263 i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~----~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS----GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLE 337 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT----SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc----CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHH
Confidence 999974 233333332 346788887655 4567888888888887741 10 1 11
Q ss_pred HH-----HhCCCcHHHHHHHH---HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728 313 AL-----INNPNGVYALVKMV---FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKAR 384 (401)
Q Consensus 313 ~~-----~~~~g~i~~Lv~~l---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~ 384 (401)
++ +.+...+..++..| +++.+...+..++.++..++...+... ...++.|+.++... .+.++..+.
T Consensus 338 al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i 411 (591)
T 2vgl_B 338 KLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTK-VNYVVQEAI 411 (591)
T ss_dssp HHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHccc-chHHHHHHH
Confidence 11 12334445444433 345567788889999999887764322 34678999999877 677777777
Q ss_pred HHHHHHHHhhHHh
Q 015728 385 MLLKLLRSKWAEE 397 (401)
Q Consensus 385 ~~L~~l~~~~~e~ 397 (401)
..++.+-+.+|+.
T Consensus 412 ~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 412 VVIRDIFRKYPNK 424 (591)
T ss_dssp HHHHHHHHHSCSS
T ss_pred HHHHHHHHHCcch
Confidence 7777776656653
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.58 E-value=3.4e-08 Score=69.42 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=41.2
Q ss_pred CcccccccccccCCceEc--Ccccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTDPVTL--CTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~--~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
....|+||++.+.+++.+ +|||. ||..|..+|+. ....||.||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhh
Confidence 356899999999999887 99998 99999999987 4578999999875
No 117
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.55 E-value=4.8e-08 Score=76.04 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=39.6
Q ss_pred CcccccccccccCCc-----------------e-EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTDP-----------------V-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P-----------------v-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
++-.|+||++.|.++ + .++|+|.|+..||.+|+. ...+||.||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 346799999998876 3 368999999999999998 5778999998864
No 118
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.54 E-value=9.1e-07 Score=90.45 Aligned_cols=261 Identities=12% Similarity=0.073 Sum_probs=174.4
Q ss_pred HHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC
Q 015728 96 STLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175 (401)
Q Consensus 96 ~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~ 175 (401)
..+.+++. +.+.+.|+.+...+..++..+++.. .-++..|.+-|.+++ +.++..|+. .|.++.
T Consensus 52 ~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n--------~~ir~~AL~-~L~~i~- 114 (591)
T 2vgl_B 52 PDVVNCMQ--TDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPN--------PLIRALAVR-TMGCIR- 114 (591)
T ss_dssp HHHHHTTS--SSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSS--------HHHHHHHHH-HHHTCC-
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCC--------HHHHHHHHH-HHHcCC-
Confidence 33444443 3457788888888888887655332 123566667677655 458888888 777765
Q ss_pred CchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHH
Q 015728 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGV 254 (401)
Q Consensus 176 ~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~ 254 (401)
..+.. ...++.+..+|.+.++.+|..|+.++.++ ....+ + .+.. .++++.|..+|. .++.++.+|+
T Consensus 115 -~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i-~~~~p--~---~~~~-~~~~~~l~~lL~d~d~~V~~~A~ 181 (591)
T 2vgl_B 115 -VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKL-HDINA--Q---MVED-QGFLDSLRDLIADSNPMVVANAV 181 (591)
T ss_dssp -SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHH-HHSSC--C---CHHH-HHHHHHHHHTTSCSCHHHHHHHH
T ss_pred -hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHH-HhhCh--h---hccc-ccHHHHHHHHhCCCChhHHHHHH
Confidence 22221 23477889999999999999999999999 44321 2 2212 378899999995 5667999999
Q ss_pred HHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC
Q 015728 255 RAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD 333 (401)
Q Consensus 255 ~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~ 333 (401)
.+|..++...... ..-...+.++.|+..+. +.++-.+...+.+|..++..+... . ...++.+.. ++++.+
T Consensus 182 ~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~-~l~~~~ 252 (591)
T 2vgl_B 182 AALSEISESHPNSNLLDLNPQNINKLLTALN---ECTEWGQIFILDCLSNYNPKDDRE--A---QSICERVTP-RLSHAN 252 (591)
T ss_dssp HHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTT-CSCSST
T ss_pred HHHHHHHhhCCCccchhccHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHH-HHcCCC
Confidence 9999999654322 11122346777888887 456667777788887776432211 1 134556666 466777
Q ss_pred hhHHHHHHHHHHHHhcC---CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 334 HEGSENAINSLMMICCD---SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+.+...|++++..+... +++..+. +-..+.+.|+.++. + ++..|..|...|..+.+..|+-+
T Consensus 253 ~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 253 SAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp THHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTT
T ss_pred hHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHH
Confidence 78999999999998642 2232222 23455678887763 4 88999999999999988666543
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.53 E-value=7.3e-06 Score=84.19 Aligned_cols=258 Identities=13% Similarity=0.032 Sum_probs=168.7
Q ss_pred HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728 97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176 (401)
Q Consensus 97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~ 176 (401)
-+++.+++. +...|..++.+|-.+....... ..+.+..++++.+.+.. .+.-..- .+..+...
T Consensus 38 ~ir~~l~~~--~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~--------~Krl~Yl-~~~~~~~~ 100 (618)
T 1w63_A 38 AIRSSFREE--DNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFT--------DKRIGYL-GAMLLLDE 100 (618)
T ss_dssp HHHHHHTTT--CTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHH--------HHHHHHH-HHHHHCCC
T ss_pred HHHHHhhCC--CHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchH--------HHHHHHH-HHHHHhCC
Confidence 334445443 3456777777777766554321 22455666777765532 3333333 34444433
Q ss_pred chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHH
Q 015728 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVR 255 (401)
Q Consensus 177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~ 255 (401)
+++.. ++ .+..+.+-|+++++..|..|..+|.++ ... + +. ..+++.+..+| +.++.+++.|+.
T Consensus 101 ~~e~~-~l----~in~l~kDL~~~n~~vr~lAL~~L~~i-~~~----~----~~--~~l~~~l~~~L~~~~~~VRk~A~~ 164 (618)
T 1w63_A 101 RQDVH-LL----MTNCIKNDLNHSTQFVQGLALCTLGCM-GSS----E----MC--RDLAGEVEKLLKTSNSYLRKKAAL 164 (618)
T ss_dssp CHHHH-HH----HHHHHHHHHSCSSSHHHHHHHHHHHHH-CCH----H----HH--HHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred CcHHH-HH----HHHHHHHhcCCCCHhHHHHHHHHHHhc-CCH----H----HH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33322 22 377788888999999999999999999 521 2 22 35678888888 556679999999
Q ss_pred HHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh----
Q 015728 256 AFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR---- 330 (401)
Q Consensus 256 aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~---- 330 (401)
++.++.. +++. ++ +.++.+.++|. +.+..++..|+.+|..++........... ..++.+++.|.+
T Consensus 165 al~~l~~~~p~~----v~-~~~~~l~~lL~---D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~ 234 (618)
T 1w63_A 165 CAVHVIRKVPEL----ME-MFLPATKNLLN---EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMS 234 (618)
T ss_dssp HHHHHHHHCGGG----GG-GGGGGTTTSTT---CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHChHH----HH-HHHHHHHHHhC---CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 9999985 4432 22 67888888888 78889999999999999976433222222 567778874432
Q ss_pred ----------cCChhHHHHHHHHHHHHhcCCHHHHHH-------H----------------------H--------HcCc
Q 015728 331 ----------VSDHEGSENAINSLMMICCDSLQAREE-------A----------------------I--------CAGV 363 (401)
Q Consensus 331 ----------~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~----------------------~--------~~g~ 363 (401)
..++-.+-..+.+|..++..+++..+. + . ...+
T Consensus 235 ~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a 314 (618)
T 1w63_A 235 GYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLA 314 (618)
T ss_dssp CCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 235666777777777776654321111 0 0 1136
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 364 LTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+..|..++.++ ++..|..|...|..+..+.|+-+
T Consensus 315 ~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 315 INILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp HHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH
Confidence 77888888776 88999999999999998777644
No 120
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=8.2e-08 Score=68.48 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.-.+...|+||++...+++.+||||. ||..|+.. ...||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 34467899999999999999999999 99999974 3579999998764
No 121
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.48 E-value=2.5e-08 Score=73.52 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=39.5
Q ss_pred CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.++..|+||++.+.+|+.++|||. ||..|+..| ..||.||..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 456789999999999999999999 999999865 369999998754
No 122
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.39 E-value=7e-06 Score=87.22 Aligned_cols=280 Identities=10% Similarity=0.023 Sum_probs=173.1
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
.+..+.+.+...+.+.+.+..|++.|..++..-..+ .........++.+...+.+.+ .+++..++. .+..
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~--------~~vr~~a~~-~l~~ 243 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD--------TRVRVAALQ-NLVK 243 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS--------HHHHHHHHH-HHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC--------HHHHHHHHH-HHHH
Confidence 344444555443335778999999999887643221 111111225667777665544 458888888 6665
Q ss_pred hcCCchh-hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccch-----hh----h----h---hhhc-cchH
Q 015728 173 LLVGETE-SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHET-----KE----L----C---CKLG-KDDR 234 (401)
Q Consensus 173 l~~~~~~-~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~-----~~----~----~---~~i~-~~~g 234 (401)
+...... ....+ ....++.++..+.+.+..++..+..++..+ ...... ++ . + ..+. ....
T Consensus 244 l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (876)
T 1qgr_A 244 IMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV-CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (876)
T ss_dssp HHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHH
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHHHHhHhhhhccccccCCCccchhHHHHHHHHHH
Confidence 5532222 12223 235677778877777888999999888888 432100 00 0 0 0000 0124
Q ss_pred HHHHHHHHcc--------CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 235 LLREIISLVH--------HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 235 ~i~~Lv~lL~--------~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
+++.++..+. ++...++.|+.+|..++..-.. .++. .+++.+...+. +.+..+++.|+.+|..++.
T Consensus 322 ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~---~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIK---NPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTT---CSSHHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHcc---CCChHHHHHHHHHHHHHHc
Confidence 6777888872 1234888999999988753221 1222 35555556666 5678899999999999997
Q ss_pred CH--hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH-HHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728 307 IE--NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR-EEAICAGVLTQLLLLLQSQCSNRTKTKA 383 (401)
Q Consensus 307 ~~--~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll~~~~~~~~~~~A 383 (401)
.. +...... ...++.++. .+++.++.++..|+.+|.+++...+... ..-.-...++.|+..+++ .+.+|+.|
T Consensus 396 ~~~~~~~~~~~--~~~l~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a 470 (876)
T 1qgr_A 396 GPEPSQLKPLV--IQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNV 470 (876)
T ss_dssp SSCHHHHHHHH--HHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHH
T ss_pred CCCHHHHHHHH--HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 53 2222222 357888888 5677788899999999999986532210 001123566778888865 37889999
Q ss_pred HHHHHHHHHhhH
Q 015728 384 RMLLKLLRSKWA 395 (401)
Q Consensus 384 ~~~L~~l~~~~~ 395 (401)
.++|..+.+..+
T Consensus 471 ~~al~~l~~~~~ 482 (876)
T 1qgr_A 471 CWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998655
No 123
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.37 E-value=7.1e-08 Score=91.06 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999876 569999998754
No 124
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.36 E-value=7.4e-06 Score=86.82 Aligned_cols=269 Identities=9% Similarity=0.066 Sum_probs=169.4
Q ss_pred hcChHHHHHHHHHHHHHHhcCc-h-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh---
Q 015728 106 EATLETKLQIVQKIHVVLRESP-P-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--- 180 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~-~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--- 180 (401)
+.++..|..|+..|..++.... . ....+ ...++.|+..+.++. +.++..+++ ++..++..-...
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~--------~~vr~~a~~-~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQS--------LQVKETTAW-CIGRIADSVAESIDP 448 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSC--------HHHHHHHHH-HHHHHHHHHGGGSCT
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCc--------HHHHHHHHH-HHHHHHHHhhhhcCC
Confidence 3467889999999999986542 1 12222 246888888887664 558888888 777776321110
Q ss_pred hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc---hhhhhhhhccchHHHHHHHHHcc-CC--chhHHHHH
Q 015728 181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE---TKELCCKLGKDDRLLREIISLVH-HN--SEASDAGV 254 (401)
Q Consensus 181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~---~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~a~ 254 (401)
...+ ...++.++..|++. ..++..|+++|.++ ...-. .+.....+ ..+++.|+.++. .+ ..++..++
T Consensus 449 ~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l-~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~ 521 (861)
T 2bpt_A 449 QQHL--PGVVQACLIGLQDH-PKVATNCSWTIINL-VEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAF 521 (861)
T ss_dssp TTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHH-HHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHH
T ss_pred HHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHH-HHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHH
Confidence 1111 24577888888765 88999999999998 43210 00222222 357788888884 23 45888999
Q ss_pred HHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhh--------c----cccchHHHHHHHHHHHHhCCHhh-HHHHHhCCCc
Q 015728 255 RAFSALCSTET-NRKTLVQEGAINGLIAYISNA--------L----TRERSLAAIAMARIEQLLAIENS-KDALINNPNG 320 (401)
Q Consensus 255 ~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~--------~----~~~~~~~~~a~~~L~~La~~~~~-~~~~~~~~g~ 320 (401)
.+|..+..... .....++ ..+|.+++.|... . +....++..++.+|..++..-.. -.... ...
T Consensus 522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l 598 (861)
T 2bpt_A 522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DML 598 (861)
T ss_dssp HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHH
T ss_pred HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHH
Confidence 99999885333 2233333 4788888888631 0 01335677888888888753211 11111 135
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 321 VYALVKMVFRVSDH-EGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 321 i~~Lv~~l~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
++.++. +++..+. ..++.++.++..++...+..-... -...++.|+..+..+ ++.+|..|..++..+.+..++++
T Consensus 599 ~~~l~~-~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 599 MGLFFR-LLEKKDSAFIEDDVFYAISALAASLGKGFEKY-LETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHHH-HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHH-HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhc
Confidence 666667 4555555 688889988888875432211111 223778888888665 77899999999998888666543
No 125
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.34 E-value=6.6e-05 Score=79.67 Aligned_cols=283 Identities=12% Similarity=0.072 Sum_probs=177.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
+.+..+.+.+.+.+.++..+..++..|..++..-.. ..+.. ...++.+...+.++... ..++..|+. .+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~------~~vr~~a~~-~l 198 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPS------NNVKLAATN-AL 198 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSC------HHHHHHHHH-HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCC------HHHHHHHHH-HH
Confidence 456666666653321577889999999999976321 11221 34677788888765311 458888888 66
Q ss_pred HhhcCC-chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCch
Q 015728 171 KLLLVG-ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSE 248 (401)
Q Consensus 171 ~~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~ 248 (401)
..+... ..+..........++.+...+.+.+.+++..+..+|..++.... +.....+. ..+++.++..+. .+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~--~~l~~~~~~~~~~~~~~ 274 (876)
T 1qgr_A 199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMG--PALFAITIEAMKSDIDE 274 (876)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--GGCHHHHT--TTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH--HHHHHHHH--HHHHHHHHHHhcCCchH
Confidence 655421 11111000011246666677777788999999999999833222 12233332 146777777664 4556
Q ss_pred hHHHHHHHHHHhcCCCc---------------------hh-HHHHhcCcHHHHHHHHHhhc----cccchHHHHHHHHHH
Q 015728 249 ASDAGVRAFSALCSTET---------------------NR-KTLVQEGAINGLIAYISNAL----TRERSLAAIAMARIE 302 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~---------------------n~-~~iv~~G~v~~Lv~lL~~~~----~~~~~~~~~a~~~L~ 302 (401)
++..|+.++.+++.... +. .... ...+|.+++.|.... +.+..++..|..+|.
T Consensus 275 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~ 353 (876)
T 1qgr_A 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence 89999998888874320 00 0011 336777888775210 123467888888888
Q ss_pred HHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHH
Q 015728 303 QLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKT 381 (401)
Q Consensus 303 ~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~ 381 (401)
.++..-.. .++ ...++.+.. .+.+.+...++.|+.+|..++.... +.... .-...++.|+..+.++ .+.+|.
T Consensus 354 ~l~~~~~~--~~~--~~~l~~l~~-~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~ 426 (876)
T 1qgr_A 354 LLATCCED--DIV--PHVLPFIKE-HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRD 426 (876)
T ss_dssp HHHHHHGG--GGH--HHHHHHHHH-HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HHHHHCcH--hhH--HHHHHHHHH-HccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHH
Confidence 88753221 121 134555555 4566778899999999999987643 32222 2345889999999877 899999
Q ss_pred HHHHHHHHHHHhhHH
Q 015728 382 KARMLLKLLRSKWAE 396 (401)
Q Consensus 382 ~A~~~L~~l~~~~~e 396 (401)
.|.++|..+.+..++
T Consensus 427 ~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 427 TAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCch
Confidence 999999999996554
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.33 E-value=2.8e-05 Score=76.01 Aligned_cols=280 Identities=11% Similarity=0.077 Sum_probs=170.1
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhh--------HH---HhcCChHHHHHHhccCCcccchhhhHHHHH
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASN--------CL---IQLGFLPLLLKQLFGKAESKFSQVYVQFVE 163 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~--------~i---~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~ 163 (401)
...+...+.+.+.+...|..|+..|+++.......+. .+ .+...-..|+..|.+.+.. + .
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~--------v-~ 107 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR--------P-S 107 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS--------S-C
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCch--------h-h
Confidence 4455566665545788899999999999755421110 00 0112234567777766543 5 5
Q ss_pred HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728 164 ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHG--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS 241 (401)
Q Consensus 164 ~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~ 241 (401)
.+.. ++..++..+.... .-.+.++.|+..+.++ +...++.+..+|..+ ...-..+..... ...+++.++.
T Consensus 108 ~~~~-~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l-~~~~~~~~~~~~---~~~ll~~l~~ 179 (462)
T 1ibr_B 108 SASQ-CVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYI-CQDIDPEQLQDK---SNEILTAIIQ 179 (462)
T ss_dssp SHHH-HHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHHSCGGGTGGG---HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-HHhCCchhhHhH---HHHHHHHHHH
Confidence 5555 6666664321111 1256799999999988 889999999999999 432100011111 1357788888
Q ss_pred Hcc-C--CchhHHHHHHHHHHhcCCCc-hhH-HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHH
Q 015728 242 LVH-H--NSEASDAGVRAFSALCSTET-NRK-TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALI 315 (401)
Q Consensus 242 lL~-~--~~~~~~~a~~aL~~Ls~~~~-n~~-~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~ 315 (401)
.|. . +..++..|+.++.++...-. +-. .....-.++.+.+++. +.+..++..++.+|..++...... ...+
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 256 (462)
T 1ibr_B 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---CPDTRVRVAALQNLVKIMSLYYQYMETYM 256 (462)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHCGGGCTTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 3 45699999999998763211 110 1111114556666655 567889999999999988532211 1111
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH-----------------HHHH---HcCcHHHHHHHhhcC-
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR-----------------EEAI---CAGVLTQLLLLLQSQ- 374 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----------------~~~~---~~g~v~~L~~ll~~~- 374 (401)
..+.++.++. .+++.++.++..|+..+..++....+.. ..+. -...++.|+..|...
T Consensus 257 -~~~l~~~~~~-~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d 334 (462)
T 1ibr_B 257 -GPALFAITIE-AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (462)
T ss_dssp -TTTHHHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -HHHHHHHHHH-HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcc
Confidence 1156676666 4566777889999999988875421100 0011 133566666666432
Q ss_pred -----CCHHHHHHHHHHHHHHHHhhHH
Q 015728 375 -----CSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 375 -----~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.+...|..|..+|..+.+..++
T Consensus 335 ~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 335 ENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred cccccccchHHHHHHHHHHHHHHhccH
Confidence 1346899999999999886653
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.30 E-value=1.3e-05 Score=71.96 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=134.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchh-H
Q 015728 192 SFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNR-K 268 (401)
Q Consensus 192 ~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~-~ 268 (401)
.+.+.+++.+...|..|+..|..++.... .... .....+++.|...+. + +..++..|+.+|..|+..-... .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~---~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP---KLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCS---SBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCC---CCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 47788888899999999999999843312 1111 122367788888883 4 5669999999999999432211 1
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
..+ .-.+|+|++.+. +.+..+++.|..+|..++..... ...++.+.. .+++.++.+++.++..|..+.
T Consensus 94 ~~~-~~ilp~ll~~l~---d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 94 NYA-SACVPSLLEKFK---EKKPNVVTALREAIDAIYASTSL-------EAQQESIVE-SLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHH-HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHH-HHcCCChHHHHHHHHHHHHHH
Confidence 112 237888998888 67788999999999999864321 124666777 467778899999999999964
Q ss_pred cC-CHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 349 CD-SLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 349 ~~-~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
.. +++. -...+ ...++.|+.+|.+. ...+|+.|...+..+.++.+++
T Consensus 162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 162 TRTQPTALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp TTCCGGGCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHcCCCCccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCHH
Confidence 33 2221 11222 35788999999777 8999999999999999988876
No 128
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.27 E-value=6.7e-05 Score=76.97 Aligned_cols=251 Identities=13% Similarity=0.153 Sum_probs=163.9
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
...+.+.|. +.++..|+.|+..+.++...+++..+ +.++.+..+|.+.+ +.++..|+. +|..+.
T Consensus 144 ~~~l~~~L~--~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d--------~~V~~~Al~-~L~~i~ 207 (618)
T 1w63_A 144 AGEVEKLLK--TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKN--------HGVLHTSVV-LLTEMC 207 (618)
T ss_dssp HHHHHHHHH--SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCC--------HHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCC--------HhHHHHHHH-HHHHHH
Confidence 344445554 35788999999999999998875332 56888888887765 459999999 888888
Q ss_pred CCchhhhhhcccCCchHHHHHHhhc---------------CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 175 VGETESLNLLNEESKMESFIVLFEH---------------GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~~---------------~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
..+.+....+ ...++.++.+|.+ .++-.|.....+|..+ ...++ +.... .++.|
T Consensus 208 ~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l-~~~~~--~~~~~------~~~~L 276 (618)
T 1w63_A 208 ERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL-GRNDD--DSSEA------MNDIL 276 (618)
T ss_dssp CSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH-TTTCH--HHHHT------THHHH
T ss_pred HhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh-CCCCH--HHHHH------HHHHH
Confidence 6554322222 2467888887763 3677888888888888 54331 22222 23344
Q ss_pred HHHcc-------CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH
Q 015728 240 ISLVH-------HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD 312 (401)
Q Consensus 240 v~lL~-------~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 312 (401)
..+++ .+..+...|++++.++...+ .+.+ .+++.|..+|. +++..++..|+.+|..++... .
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~---~~d~~vr~~aL~~L~~i~~~~---p 345 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLL---NNDKNIRYVALTSLLKTVQTD---H 345 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHT---CSSTTTHHHHHHHHHHHHHHH---H
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHh---CCCCchHHHHHHHHHHHHhhC---H
Confidence 44431 12357788888888875432 2222 46788888888 567788888998888887532 1
Q ss_pred HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.++. .....++. ++.+.+..++..|+.+|..++... +.. . .+..|+..+.+. +...|..+...+..++.
T Consensus 346 ~~~~--~~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~-nv~-~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 346 NAVQ--RHRSTIVD-CLKDLDVSIKRRAMELSFALVNGN-NIR-G-----MMKELLYFLDSC-EPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHG--GGHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSS-STH-H-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHH-HccCCChhHHHHHHHHHHHHcccc-cHH-H-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 2221 24556666 466777788888888888887653 221 2 235666666665 67777777777777766
Q ss_pred hh
Q 015728 393 KW 394 (401)
Q Consensus 393 ~~ 394 (401)
.+
T Consensus 415 k~ 416 (618)
T 1w63_A 415 KY 416 (618)
T ss_dssp SS
T ss_pred Hh
Confidence 43
No 129
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.23 E-value=6.5e-06 Score=91.20 Aligned_cols=267 Identities=7% Similarity=0.068 Sum_probs=173.0
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+.+.+.|..|...|.+........-..-.....++.|+..|.+.+ .+++..|+. .|..+...-.+ ..+
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~--------~~vR~~A~~-~L~~l~~~~~~--~~~- 84 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN--------GEVQNLAVK-CLGPLVSKVKE--YQV- 84 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS--------HHHHHHHHH-HHHHHHTTSCH--HHH-
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC--------HHHHHHHHH-HHHHHHHhCCH--HHH-
Confidence 357789999999999877553211000111245788888887554 558888888 77766632221 111
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh----hhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHH
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE----LCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSA 259 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~----~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~ 259 (401)
...++.++..|.+++..+|..|+.+|..++..... +. ..... ...++|.|+..+. ++...+..|+.+|.+
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 12467778888888888999999999998332221 00 01111 1357889998885 445699999999999
Q ss_pred hcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHH
Q 015728 260 LCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSE 338 (401)
Q Consensus 260 Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~ 338 (401)
++.. ...-... -...++.++..|. +.+..++..|+.+|..++...... + -...++.+++.+....+...+.
T Consensus 161 ~~~~~~~~l~~~-~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~~~~--~--~~~~l~~l~~~L~~~~~~~~r~ 232 (1230)
T 1u6g_C 161 MLSRQGGLLVNF-HPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGNI--V--FVDLIEHLLSELSKNDSMSTTR 232 (1230)
T ss_dssp HHHHTCSSCTTT-HHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCT
T ss_pred HHHHhHhHHHHH-HHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhcCHH--H--HHHHHHHHHHHhccCCchhHHH
Confidence 8842 1111001 1235666666676 567789999999999999653322 2 2357888998665544345677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
.++.++..++...+..- .-.-...++.++..+++. ++.+|+.|...+..+.+.+++++
T Consensus 233 ~a~~~l~~l~~~~~~~~-~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp THHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHH
Confidence 78888888876433210 011256788899998876 88899999999999998777653
No 130
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2e-06 Score=63.24 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCccccccccccc--CCceEcCcc-----ccccHHhHHHHHHcC-CCCCCCCcccCCCC
Q 015728 9 IPHLFRCPISLDLF--TDPVTLCTG-----QTYDRSSIEKWLAAG-NLTCPVTMQTLHDP 60 (401)
Q Consensus 9 ~~~~~~C~iC~~~~--~~Pv~~~Cg-----h~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~ 60 (401)
..++..|.||++.+ .+|+.++|. |.|...||.+|+... ..+||.|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999877 468888996 999999999999863 46899999988653
No 131
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.22 E-value=1.7e-05 Score=69.32 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=134.2
Q ss_pred ChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728 91 TIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169 (401)
Q Consensus 91 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~ 169 (401)
+++.+..+.++|. +.++..+.+|+..|..+.+.-+.. +..+. ...++.++.++++.+ .++.-+|+. +
T Consensus 31 ~e~~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~d--------Ekval~A~r-~ 98 (265)
T 3b2a_A 31 DKRALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQEN--------EKVTIKALR-A 98 (265)
T ss_dssp CHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTT--------HHHHHHHHH-H
T ss_pred chhHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccc--------hhHHHHHHH-H
Confidence 4466777878774 557889999999999999985543 33333 346999999998876 458888998 6
Q ss_pred HHhhcCCchhh-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCc
Q 015728 170 QKLLLVGETES-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNS 247 (401)
Q Consensus 170 L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~ 247 (401)
|+.|-.+.+-. .... -.+..+.+++++++.-.++.++..+..+ ...+ ...+.+..+..++ +.+.
T Consensus 99 L~~LLe~vpL~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~----------~~~~V~~~l~sLl~Skd~ 164 (265)
T 3b2a_A 99 LGYLVKDVPMGSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE----------DSKLVRTYINELVVSPDL 164 (265)
T ss_dssp HHHHHTTCCBCHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC----------CCHHHHHHHHHHHTCSSH
T ss_pred HHHHHcCCCCCHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc----------chHHHHHHHHHHHhCCCh
Confidence 66554332211 1111 1356778888899999999999999998 6543 1236677788888 5677
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 307 (401)
+++..+.++|.+++...++...+ .+++.-+-.+|. +.++.+++.|+.+|..+...
T Consensus 165 ~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~---~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 165 YTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQ---NDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHT---CSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999644332221 124455778888 67999999999999998865
No 132
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.21 E-value=1.8e-07 Score=73.86 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=0.4
Q ss_pred cccccccccccCCc-----------------eE-cCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDP-----------------VT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~P-----------------v~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
+-.|+||++.|.+| +. ++|+|.|+..||.+|+. ...+||.||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 35799999999774 22 48999999999999998 4678999998764
No 133
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.15 E-value=5.9e-05 Score=79.88 Aligned_cols=291 Identities=11% Similarity=0.085 Sum_probs=169.3
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCC-------cccchhhhHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKA-------ESKFSQVYVQFVEES 165 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~~~~~~~~~~~~~~a 165 (401)
+.+..+.+.+...+.+...+..++..|..+............ ...+|.++..|...- ..........++..+
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 445555555554333466788899999999887664322222 246777888776420 000000124466677
Q ss_pred HHHHHHhhcCCch-hhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc
Q 015728 166 LSCVQKLLLVGET-ESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV 243 (401)
Q Consensus 166 ~~~~L~~l~~~~~-~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL 243 (401)
+. ++..+...-. .....+ ...++.++..+++.+. .+++.+..++..++.... ++....+ ..++|.|+..+
T Consensus 577 ~~-~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~--~~~~~~l---~~i~~~l~~~l 648 (861)
T 2bpt_A 577 LT-VLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG--KGFEKYL---ETFSPYLLKAL 648 (861)
T ss_dssp HH-HHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG--GGGHHHH---HHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh--hhHHHHH---HHHHHHHHHHh
Confidence 77 6665552211 112222 2457777888887766 889998888888832222 1333333 35778888888
Q ss_pred c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcH
Q 015728 244 H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGV 321 (401)
Q Consensus 244 ~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i 321 (401)
+ .+...+..++.++..++..-.....-.-...++.+++.|.+. +.+.+++..++.+|..++..- +.-.... ...+
T Consensus 649 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l 725 (861)
T 2bpt_A 649 NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIGADFIPYL--NDIM 725 (861)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHH
Confidence 4 566789999999998884332211111245778888888730 123789999999999988642 2222221 2456
Q ss_pred HHHHHHHHhcCC-----------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHH----HHhhcC--C-CHHHHHHH
Q 015728 322 YALVKMVFRVSD-----------HEGSENAINSLMMICCDSLQAREEAICAGVLTQLL----LLLQSQ--C-SNRTKTKA 383 (401)
Q Consensus 322 ~~Lv~~l~~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~----~ll~~~--~-~~~~~~~A 383 (401)
+.+++. +.... ...++.++.++..++..-... ...+ ...++.++ ..+++. . +..+|+.|
T Consensus 726 ~~l~~~-~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~-~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a 802 (861)
T 2bpt_A 726 ALCVAA-QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEAL-FPYVGTIFQFIAQVAEDPQLYSEDATSRAA 802 (861)
T ss_dssp HHHHHH-HTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHH-GGGHHHHHHHHHHHHHCHHHHTSHHHHHHH
T ss_pred HHHHHH-HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHH-HHHHHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 667763 43221 235677777777776432110 0111 12333333 344332 1 67899999
Q ss_pred HHHHHHHHHhh-HHhh
Q 015728 384 RMLLKLLRSKW-AEEL 398 (401)
Q Consensus 384 ~~~L~~l~~~~-~e~~ 398 (401)
..++..+.+.+ +.++
T Consensus 803 ~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 803 VGLIGDIAAMFPDGSI 818 (861)
T ss_dssp HHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHcCCchH
Confidence 99999999977 6554
No 134
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.10 E-value=1.3e-06 Score=70.81 Aligned_cols=119 Identities=9% Similarity=0.099 Sum_probs=83.7
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
...++.|+.+|.+++.. ++..|++ .|..+. . ..++.|+..|++++..+|..|+++|.++
T Consensus 11 ~~~~~~l~~~L~~~~~~--------vR~~A~~-~L~~~~-----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 11 SSGLVPRGSHMADENKW--------VRRDVST-ALSRMG-----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ----------CCSSCCC--------SSSSCCS-STTSCS-----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred cccHHHHHHHhcCCCHH--------HHHHHHH-HHHHhC-----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 45678888888877654 7777777 555332 1 1378899999999999999999998777
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
.. ..+++.|+.+| +++..++..|+++|.++. +..+++.|+++|. +++..++
T Consensus 70 -~~--------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~---d~~~~vr 121 (131)
T 1te4_A 70 -QD--------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAE---TGTGFAR 121 (131)
T ss_dssp -CS--------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTT---SCCTHHH
T ss_pred -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHh---CCCHHHH
Confidence 31 25689999999 466779999999999886 2357899999998 6788899
Q ss_pred HHHHHHHHH
Q 015728 295 AIAMARIEQ 303 (401)
Q Consensus 295 ~~a~~~L~~ 303 (401)
..|+.+|..
T Consensus 122 ~~A~~aL~~ 130 (131)
T 1te4_A 122 KVAVNYLET 130 (131)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHh
Confidence 998888754
No 135
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.03 E-value=8e-07 Score=72.03 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~ 264 (401)
....++.++..|++++..+|..|+.+|..+ . . ..++.|+.+|+ ++..++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~-~-------------~--~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM-G-------------D--EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSC-S-------------S--TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHh-C-------------c--hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence 456788899999998999998888777554 2 1 12588999994 566799999999988763
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
.++++.|+++|. +++..++..|+.+|..+. +..+++.|++ ++++.++.++..|+.+|
T Consensus 72 --------~~a~~~L~~~L~---d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~-~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 --------ERAVEPLIKLLE---DDSGFVRSGAARSLEQIG-----------GERVRAAMEK-LAETGTGFARKVAVNYL 128 (131)
T ss_dssp --------HHHHHHHHHHHH---HCCTHHHHHHHHHHHHHC-----------SHHHHHHHHH-HTTSCCTHHHHHHHHHG
T ss_pred --------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------cHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 246999999998 688899999999999874 3457889999 56777888999898887
Q ss_pred HH
Q 015728 345 MM 346 (401)
Q Consensus 345 ~~ 346 (401)
..
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 54
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.93 E-value=6.7e-05 Score=67.21 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=125.1
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhh-hHHHhcCChHHHHHHhc-cCCcccchhhhHHHHHHHHHHHHHhhcC
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPAS-NCLIQLGFLPLLLKQLF-GKAESKFSQVYVQFVEESLSCVQKLLLV 175 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~~~~~a~~~~L~~l~~ 175 (401)
+.+.+. +.++..|..|+..|..+....+... ..+ ...++.|...|. +.+ ..++..|+. ++..|+.
T Consensus 20 l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~--------~~V~~~a~~-~l~~la~ 86 (242)
T 2qk2_A 20 FYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN--------VVLVAMAGK-CLALLAK 86 (242)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC--------HHHHHHHHH-HHHHHHH
T ss_pred HHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC--------HHHHHHHHH-HHHHHHH
Confidence 434443 4679999999999999998844311 111 234777778774 554 458888888 7777773
Q ss_pred Cch-hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728 176 GET-ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG 253 (401)
Q Consensus 176 ~~~-~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a 253 (401)
.-. .....+ ...++.++..+.+.+..+|+.|..+|..+ .... . ...+++.|...|+ .++.++..+
T Consensus 87 ~l~~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~-~~~~---~-------~~~ll~~l~~~l~~~~~~vr~~~ 153 (242)
T 2qk2_A 87 GLAKRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAI-YAST---S-------LEAQQESIVESLSNKNPSVKSET 153 (242)
T ss_dssp HHGGGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTS---C-------HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHhhhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHcC---C-------HHHHHHHHHHHHcCCChHHHHHH
Confidence 211 111112 23688999999999999999999999999 4322 1 1256788888884 567799999
Q ss_pred HHHHHHhc-CC-Cc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728 254 VRAFSALC-ST-ET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 254 ~~aL~~Ls-~~-~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 307 (401)
+..|..+. .. ++ ....+ . ..+|.|+.+|. +.+.+++..|..+|..++..
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLN---EPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHH
Confidence 99999965 33 22 12222 2 58999999998 78889999999999988853
No 137
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.89 E-value=0.0012 Score=69.77 Aligned_cols=200 Identities=13% Similarity=0.140 Sum_probs=126.3
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIIS 217 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s 217 (401)
+..|..+|.+.+. .+.+.|+. .|..+-.+..+. .++..|+..+ ...+..++..++..|..+ .
T Consensus 474 ~e~L~~~L~dd~~--------~~~~~Aal-ALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll-~ 536 (963)
T 4ady_A 474 YEALKEVLYNDSA--------TSGEAAAL-GMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALI-N 536 (963)
T ss_dssp HHHHHHHHHTCCH--------HHHHHHHH-HHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhcCCH--------HHHHHHHH-HHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhh-h
Confidence 6667777765542 24444444 555432222211 1355566654 344677888888888877 4
Q ss_pred cccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHH
Q 015728 218 SSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAA 295 (401)
Q Consensus 218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~ 295 (401)
... +..++.++..|. . ++-++..++.++.--.....|. .+|..|++.+.+ +.+..++.
T Consensus 537 ~g~------------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~--d~~d~VRr 596 (963)
T 4ady_A 537 YGR------------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVS--DSNDDVRR 596 (963)
T ss_dssp TTC------------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHH--CSCHHHHH
T ss_pred CCC------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhcc--CCcHHHHH
Confidence 332 235688888883 3 3345555555554333444443 256778888775 56778899
Q ss_pred HHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC
Q 015728 296 IAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC 375 (401)
Q Consensus 296 ~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~ 375 (401)
.|+.+|..+... ++..++.+++.+.++.++.++..|+.+|..++..++.. . ++..|..++.+.
T Consensus 597 aAViaLGlI~~g---------~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--~-----aid~L~~L~~D~- 659 (963)
T 4ady_A 597 AAVIALGFVLLR---------DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--S-----AIDVLDPLTKDP- 659 (963)
T ss_dssp HHHHHHHHHTSS---------SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--H-----HHHHHHHHHTCS-
T ss_pred HHHHHHHhhccC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--H-----HHHHHHHHccCC-
Confidence 999999887653 33567888886777788999999999999998765432 1 334455555444
Q ss_pred CHHHHHHHHHHHHHHHH
Q 015728 376 SNRTKTKARMLLKLLRS 392 (401)
Q Consensus 376 ~~~~~~~A~~~L~~l~~ 392 (401)
++.+|+.|...|.++.-
T Consensus 660 d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 660 VDFVRQAAMIALSMILI 676 (963)
T ss_dssp SHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 77888888777776653
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00024 Score=64.08 Aligned_cols=194 Identities=8% Similarity=0.023 Sum_probs=131.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH-HHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCc---h
Q 015728 193 FIVLFEHGSCSIKKRLCHLVEV-IISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCSTET---N 266 (401)
Q Consensus 193 Lv~~L~~~~~~~~~~aa~~L~~-l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~---n 266 (401)
+...+.+.+...|..|...|.. + ..... ...........++..|...+ + .+..++..|+.+|..|+..-. -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~-~~~~~--~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSV-LSQTK--KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHT-GGGCC--CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHH-HhcCC--ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 4566788899999988888888 7 32110 11100123246778888888 3 355689999999999994222 1
Q ss_pred h-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 267 R-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 267 ~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
. .... -.+|++++.+. +....+++.+..+|..++..-+- ..... -...++.|+. .+++.++.+++.++.+|
T Consensus 98 ~~~y~~--~llp~ll~~l~---dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~-~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 98 SKDYVS--LVFTPLLDRTK---EKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILE-HMKHKTPQIRMECTQLF 170 (249)
T ss_dssp CHHHHH--HHHHHHHHGGG---CCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHH-HHcCCChHHHHHHHHHH
Confidence 1 2222 27889999888 56678888888888888753210 00000 0134566777 46777889999999999
Q ss_pred HHHhcCCHH---HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 345 MMICCDSLQ---AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 345 ~~l~~~~~~---~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
..+....+. .-...+....++.|..+|.+. ...+|+.|...|..+.++.+++
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHH
Confidence 998765432 111222268889999999777 9999999999999999988775
No 139
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.78 E-value=0.0025 Score=65.32 Aligned_cols=256 Identities=14% Similarity=0.193 Sum_probs=161.4
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE 177 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~ 177 (401)
+.++|.+.+.++-.|+.|+..+.++.+.+++. +...+.++.|..+|.+.+ +.++..|+. ++..++.++
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d--------~~V~~~a~~-~l~~i~~~~ 218 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQH--------LGVVTAATS-LITTLAQKN 218 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHHHC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCC--------ccHHHHHHH-HHHHHHHhC
Confidence 33545334567899999999999999987642 222589999999997665 459999999 888776433
Q ss_pred hhhhhhcccCCchHHHHHHhh----cC-------------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728 178 TESLNLLNEESKMESFIVLFE----HG-------------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240 (401)
Q Consensus 178 ~~~~~~v~~~g~i~~Lv~~L~----~~-------------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv 240 (401)
... . ...++.++..|. .+ ++-.|.....+|..+ ...+ .++.+..+. ..+..++
T Consensus 219 ~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~-~~~~-d~~~~~~l~---~~L~~il 288 (621)
T 2vgl_A 219 PEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY-PPPE-DPAVRGRLT---ECLETIL 288 (621)
T ss_dssp HHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS-SSCS-SHHHHHHHH---HHHHHHH
T ss_pred hHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh-CCCC-CHHHHHHHH---HHHHHHH
Confidence 321 1 124555554443 22 455676666666555 4321 013333221 2334444
Q ss_pred HHcc----------CC--chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728 241 SLVH----------HN--SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE 308 (401)
Q Consensus 241 ~lL~----------~~--~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 308 (401)
..+. .+ ..+.-.++.++..+...++- .+ .++..|..+|. +++..++-.|+..|..++...
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~----~~-~~~~~L~~~L~---~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL----LV-RACNQLGQFLQ---HRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH----HH-HHHHHHHHHSS---CSCHHHHHHHHHHHHHHTTCT
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH----HH-HHHHHHHHHhc---CCCcchHHHHHHHHHHHHhcc
Confidence 3221 12 25777888888888633222 22 36778999997 577889999999999998654
Q ss_pred hhHHHHHhCCCcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 309 NSKDALINNPNGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 309 ~~~~~~~~~~g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
.....+. .....++. .++ +.+..++..++.+|..++.. +.... .+..|...+... +...|+.+...+
T Consensus 361 ~~~~~~~---~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I 428 (621)
T 2vgl_A 361 FSHEAVK---THIETVIN-ALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETA-DYSIREEIVLKV 428 (621)
T ss_dssp TTHHHHH---TTHHHHHH-HHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHH
T ss_pred CcHHHHH---HHHHHHHH-HhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 3222332 34566777 466 78888999999999999854 33323 345677777665 667777777666
Q ss_pred HHHHHhhH
Q 015728 388 KLLRSKWA 395 (401)
Q Consensus 388 ~~l~~~~~ 395 (401)
..++..++
T Consensus 429 ~~la~k~~ 436 (621)
T 2vgl_A 429 AILAEKYA 436 (621)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66665443
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.73 E-value=0.001 Score=61.63 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=123.7
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+..+.+.+ |. +++.++++.++..|......+......+++.||+..|+++....+.. .+.+++. ++..
T Consensus 119 ra~~iiek-L~--~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN--------~q~Y~L~-AL~~ 186 (339)
T 3dad_A 119 RVNAILEK-LY--SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHN--------YQSYILR-ALGQ 186 (339)
T ss_dssp HHHHHHHH-HH--HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHH--------HHHHHHH-HHHH
T ss_pred HHHHHHHH-Hh--cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChH--------HHHHHHH-HHHH
Confidence 44444444 44 35678899999999997777778888999999999999999887654 8999999 7776
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchH---------HHHHHHHHc
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR---------LLREIISLV 243 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g---------~i~~Lv~lL 243 (401)
|-.+.+....++.....|..+..++.+.+..+...|..+|..++..++ .+...+..+-. .++.|+.+|
T Consensus 187 LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se---~~~~lv~~av~~v~~~~~~~p~~~Lv~~L 263 (339)
T 3dad_A 187 LMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE---NNAPLFIRAVNSVASTTGAPPWANLVSIL 263 (339)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHCCCTTHHHHHHH
T ss_pred HHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc---ccchHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 666666666677566689999999988788888899999999844443 44444433212 256899999
Q ss_pred c----CCchhHHHHHHHHHHhcC-CCc--hhHHHH----hcCcHHHHHHHHH
Q 015728 244 H----HNSEASDAGVRAFSALCS-TET--NRKTLV----QEGAINGLIAYIS 284 (401)
Q Consensus 244 ~----~~~~~~~~a~~aL~~Ls~-~~~--n~~~iv----~~G~v~~Lv~lL~ 284 (401)
. .+.+.+.+|...|-.+-. .++ .+..++ +.|.=..+.++|.
T Consensus 264 ~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 264 EEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred hccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence 3 355688887776665542 232 233443 3455455666666
No 141
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.73 E-value=0.013 Score=49.41 Aligned_cols=211 Identities=11% Similarity=0.140 Sum_probs=140.1
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEV 214 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~ 214 (401)
..++..++.+|.+.-.. +|.+|+. ++..++...++.. ...+..|+.+++ +.....-+..+.+++.
T Consensus 31 ~~~l~~lI~~LDDDlwt--------V~kNAl~-vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWT--------VVKNAIS-IIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp HHHHHHHHHHTTCSCHH--------HHHHHHH-HHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHH--------HHHhHHH-HHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhH
Confidence 34677888988766543 8999999 8888875443332 224666666665 4566776677789999
Q ss_pred HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccch
Q 015728 215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERS 292 (401)
Q Consensus 215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 292 (401)
+ +. .+..++. +.+|.+..=.+ ++++.+.+-..+|-.++. +|+--. +++.-+..+|. +++..
T Consensus 97 l-a~------i~Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlt---skd~~ 159 (253)
T 2db0_A 97 M-AK------EKPELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLS---SKNRE 159 (253)
T ss_dssp H-HH------HCHHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTS---CSSHH
T ss_pred H-HH------hCHHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhc---CCChH
Confidence 8 53 3444433 56677776664 678899999999998885 444333 34555677777 45533
Q ss_pred HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 015728 293 LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQ 372 (401)
Q Consensus 293 ~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~ 372 (401)
.=+.+|..+..-++|.-.-+. -..|.|.. ++.+.+..++..|+.+|.+++..++..|+.+. .-+.-+.
T Consensus 160 ---Dkl~aLnFi~alGen~~~yv~--PfLprL~a-LL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~ 227 (253)
T 2db0_A 160 ---DKLTALNFIEAMGENSFKYVN--PFLPRIIN-LLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN 227 (253)
T ss_dssp ---HHHHHHHHHHTCCTTTHHHHG--GGHHHHHG-GGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC
T ss_pred ---HHHHHHHHHHHHhccCccccC--cchHHHHH-HHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc
Confidence 334455555555555544432 46888988 68888988999999999999999888774433 2344444
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 015728 373 SQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 373 ~~~~~~~~~~A~~~L~~l 390 (401)
+. ++-+++.....|..+
T Consensus 228 D~-S~lv~~~V~egL~rl 244 (253)
T 2db0_A 228 DT-SSLVNKTVKEGISRL 244 (253)
T ss_dssp CS-CHHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHH
Confidence 54 666666666555544
No 142
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.72 E-value=0.00016 Score=63.37 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=149.0
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC--chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG--ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEV 214 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~--~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 214 (401)
+.+..|..+|.+.+ +.++.+++. ++..+... +.-....+ ...++.++.++++.+..+..+|..+|..
T Consensus 33 ~~l~~L~~LL~dkD--------~~vk~raL~-~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~dEkval~A~r~L~~ 101 (265)
T 3b2a_A 33 RALFLILELAGEDD--------ETTRLRAFV-ALGEILKRADSDLRMMVL--ERHLDVFINALSQENEKVTIKALRALGY 101 (265)
T ss_dssp HHHHHHHHHTTSSC--------HHHHHHHHH-HHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccc--------hHHHHHHHH-HHHHHHHhccccccHHHH--HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 35778899997665 569999999 77766633 22223333 3569999999999999999999999999
Q ss_pred HHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH
Q 015728 215 IISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL 293 (401)
Q Consensus 215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 293 (401)
|....+ -...... -++..|..++ +++.-.+.+|+..|..|...... .+++..|..++. +.+.++
T Consensus 102 LLe~vp---L~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~---Skd~~v 166 (265)
T 3b2a_A 102 LVKDVP---MGSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVV---SPDLYT 166 (265)
T ss_dssp HHTTCC---BCHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHT---CSSHHH
T ss_pred HHcCCC---CCHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHh---CCChhH
Confidence 855443 1122221 2456777777 45666999999999999432222 236678889996 899999
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHH-HHHcCcHHHHHH-Hh
Q 015728 294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREE-AICAGVLTQLLL-LL 371 (401)
Q Consensus 294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~v~~L~~-ll 371 (401)
+..++.+|.+++...+...-+- ..+..+-. ++++.++...+.|+.+|..+.+.. ..+. +-+.-.+...+. +.
T Consensus 167 K~agl~~L~eia~~S~D~~i~~---~I~~eI~e-lL~~eD~~l~e~aLd~Le~ils~p--i~~~~~~~~~~~~~~v~~l~ 240 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSSADSGHLT---LILDEIPS-LLQNDNEFIVELALDVLEKALSFP--LLENVKIELLKISRIVDGLV 240 (265)
T ss_dssp HHHHHHHHHHHGGGCSSCCCGG---GTTTTHHH-HHTCSCHHHHHHHHHHHHHHTTSC--CCSCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhcccCCHHHHH---HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCc--ccHhHHHHHHHHHHHHHHHH
Confidence 9999999999996433222221 22333445 566778999999999999998763 1111 111112222222 22
Q ss_pred -hcCCCHHHHHHHHHHHHHHHH
Q 015728 372 -QSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 372 -~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..| .|..|.+|...-..+..
T Consensus 241 ~~~~-~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 241 YREG-APIIRLKAKKVSDLIDS 261 (265)
T ss_dssp GCSS-CHHHHHHHHHHHHHHHH
T ss_pred HhcC-ChhHHHHHHHHHHHHHH
Confidence 244 88999999887666543
No 143
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=2.4e-05 Score=58.55 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=38.7
Q ss_pred cccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 14 RCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.|++|.-.+..-.. +||+|.||..|+..|..++...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 69999988876554 6999999999999999878889999997754
No 144
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=3.4e-05 Score=55.40 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=38.9
Q ss_pred cccccccccccCCceEc-CccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~ 59 (401)
.-.|.||.+++..-..- .|+|.|-..||.+|++.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45799999988754443 699999999999999853 3789999987653
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.68 E-value=0.00078 Score=62.44 Aligned_cols=144 Identities=9% Similarity=0.063 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHH-hcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHH
Q 015728 248 EASDAGVRAFSA-LCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVK 326 (401)
Q Consensus 248 ~~~~~a~~aL~~-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~ 326 (401)
+.++.++.-|.. ++.+.+=...+++.|++..|+.+.. .++...+..++.+|.+|-....|...++.++..|..++.
T Consensus 133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~---~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys 209 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA---AADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT 209 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT---TSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH---hcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence 456666777776 5567778899999999999999998 568889999999999999999999888878889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CcHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHhh
Q 015728 327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAIC--------A--GVLTQLLLLLQ--SQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~v~~L~~ll~--~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
+..+....+.+.|+.+|..++..++.....+.+ . --.+.|+.+|+ .+.+...+.+|-.++.-+-..-
T Consensus 210 -lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 210 -LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp -GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred -HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC
Confidence 566677788999999999998776422222221 1 13778999997 2337888888888887665543
Q ss_pred H
Q 015728 395 A 395 (401)
Q Consensus 395 ~ 395 (401)
|
T Consensus 289 p 289 (339)
T 3dad_A 289 P 289 (339)
T ss_dssp S
T ss_pred C
Confidence 3
No 146
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.68 E-value=0.00013 Score=80.72 Aligned_cols=234 Identities=12% Similarity=0.119 Sum_probs=146.4
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS 218 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~ 218 (401)
++.|+.-+.+++ ++++..|.. -|.+....+.....--.....++.++..|.+.+.++|..|+.+|..+ ..
T Consensus 8 l~~lL~~l~s~d--------~~~R~~A~~-~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l-~~ 77 (1230)
T 1u6g_C 8 ISNLLEKMTSSD--------KDFRFMATN-DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL-VS 77 (1230)
T ss_dssp HHHHHHHTTCSS--------HHHHHHHHH-HHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHhcCCCC--------HhHHHHHHH-HHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HH
Confidence 555666666666 448888877 44433222100000000123577888889888999999999999999 43
Q ss_pred ccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchh------HHHHhcCcHHHHHHHHHhhccccc
Q 015728 219 SHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNR------KTLVQEGAINGLIAYISNALTRER 291 (401)
Q Consensus 219 ~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~------~~iv~~G~v~~Lv~lL~~~~~~~~ 291 (401)
.-. + ..+ ..+++.|+..| +++..++..|+.+|..++..-... ..-.-...+|.|++.+.+ +.+.
T Consensus 78 ~~~--~--~~~---~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~ 148 (1230)
T 1u6g_C 78 KVK--E--YQV---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDV 148 (1230)
T ss_dssp TSC--H--HHH---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCH
T ss_pred hCC--H--HHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC--CCch
Confidence 221 1 111 24677888877 456678889999999887422211 111223588889998873 3567
Q ss_pred hHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728 292 SLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL 370 (401)
Q Consensus 292 ~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 370 (401)
.++..|+.+|..++..... .+.. ....++.|+. .+.+.++.+++.|+.+|..++...++ .+ -...++.|+..
T Consensus 149 ~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~ 221 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSE 221 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHH
Confidence 8899999999998842110 0100 0123455555 35566778999999999999876432 12 34568888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 371 LQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 371 l~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+....+...|..|...+..+.+..|..+
T Consensus 222 L~~~~~~~~r~~a~~~l~~l~~~~~~~~ 249 (1230)
T 1u6g_C 222 LSKNDSMSTTRTYIQCIAAISRQAGHRI 249 (1230)
T ss_dssp HHHTCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred hccCCchhHHHHHHHHHHHHHHHhHHHH
Confidence 8766345677788888888887655543
No 147
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.61 E-value=0.0016 Score=61.59 Aligned_cols=253 Identities=11% Similarity=0.035 Sum_probs=136.9
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
-++..++.++.++-.+....+..-+... ....+..++++.+.+.. .+.-.-- .+.+++...++ .++
T Consensus 39 ~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~--------lKrLvYL-yl~~~~~~~~e--~iL-- 104 (355)
T 3tjz_B 39 INPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPT--------LRRMCYL-TIKEMSCIAED--VII-- 104 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHH--------HHHHHHH-HHHHHTTTSSC--GGG--
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHH--------HHHHHHH-HHHHhCCCHHH--HHH--
Confidence 3455556677777777766543211111 12355667777776642 3332222 33344433222 123
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
++..+.+-++++++-.|-.|.++|+++ ...+ +. +.+.+.+...| +.++-+++.|+-+...|.....
T Consensus 105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I-~~~~--------m~--~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p 171 (355)
T 3tjz_B 105 --VTSSLTKDMTGKEDSYRGPAVRALCQI-TDST--------ML--QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171 (355)
T ss_dssp --GHHHHHHHHHSSCHHHHHHHHHHHHHH-CCTT--------TH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH
T ss_pred --HHHHHHhhcCCCcHhHHHHHHHHHhcC-CCHH--------HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH
Confidence 477778888888999999999999888 4322 11 24556677777 4566699999999888874332
Q ss_pred hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHH---hCC-----------------------
Q 015728 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALI---NNP----------------------- 318 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~---~~~----------------------- 318 (401)
. +++ +.++.+-+++. +.+.-++-+|+.+|..+...+. .-..++ .+.
T Consensus 172 e---~v~-~~~~~l~~ll~---d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 172 D---VVK-RWVNEAQEAAS---SDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp H---HHH-TTHHHHHHHTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred H---HHH-HHHHHHHHHhc---CCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2 333 68888888888 6777888889998888886332 111111 010
Q ss_pred -CcHHHHHHH---HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 319 -NGVYALVKM---VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 319 -g~i~~Lv~~---l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
+.-..+++. ++++.++.+.-.|++++..+...+.. ....++..|..++.+. ++..|-.|...|..+...+
T Consensus 245 ~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~-----~~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK-----ELAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------
T ss_pred hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-----HHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHC
Confidence 111111111 12334455666677777776442211 1234456677777776 8899999999999998888
Q ss_pred HHhhc
Q 015728 395 AEELK 399 (401)
Q Consensus 395 ~e~~~ 399 (401)
|+-++
T Consensus 319 P~~v~ 323 (355)
T 3tjz_B 319 PSAVT 323 (355)
T ss_dssp -----
T ss_pred cHHHH
Confidence 87654
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.60 E-value=0.012 Score=62.68 Aligned_cols=264 Identities=11% Similarity=0.061 Sum_probs=164.8
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
....+.+++.+..-.+ . ..|+..+..++...... ...-.=-+.+|.++..+.+... .+++.|..++.
T Consensus 53 ~~~~~~~~~~~~~k~~-~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~--------~v~~aa~~~~~ 120 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKT-A---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDK--------EIQSVASETLI 120 (986)
T ss_dssp HHHHHHHHHHHTSHHH-H---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSH--------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCC-H---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCch--------HHHHHHHHHHH
Confidence 3566666666653322 1 77888888888655321 1111123567888887765543 36655554222
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhcc-chHHHHHHHHHc-cCCc
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGK-DDRLLREIISLV-HHNS 247 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL-~~~~ 247 (401)
..+..-+.+.. ...+|.|+..|+++ ....+..|..+|..| .... ...++. -..+||.+-..+ +...
T Consensus 121 ~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~-~~~~-----~~~~~~~~~~~~p~~~~~~~d~k~ 189 (986)
T 2iw3_A 121 SIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM-VDAA-----KDQVALRMPELIPVLSETMWDTKK 189 (986)
T ss_dssp HHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHS-----HHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH-HHHh-----HHHHHHhccchhcchHhhcccCcH
Confidence 22222222222 23589999999766 579999999999999 5332 222321 134666666666 5577
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC---CHhhHHHHHhCCCcHHHH
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA---IENSKDALINNPNGVYAL 324 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~---~~~~~~~~~~~~g~i~~L 324 (401)
+++++|..++..+|..-+|+.. ...||.|++.+. +++ -...++..|..-.- -..--..+ .+|-|
T Consensus 190 ~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~---~p~--~~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l 256 (986)
T 2iw3_A 190 EVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIA---DPT--EVPETVHLLGATTFVAEVTPATLSI-----MVPLL 256 (986)
T ss_dssp HHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHH---CTT--HHHHHHHHHTTCCCCSCCCHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhc---Chh--hhHHHHHHhhcCeeEeeecchhHHH-----HHHHH
Confidence 8999999999999987777653 357999999998 332 23334433332221 11111222 26666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 325 VKMVFRVSDHEGSENAINSLMMICCDSL--QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 325 v~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
.+- ++..+...++.++-+.-|+|+--+ ... .-.--..+|-|-.....-..|++|+.|..++..|.+.
T Consensus 257 ~r~-l~~~~~~~~r~~~~~~~n~~~lv~~~~~~-~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 257 SRG-LNERETGIKRKSAVIIDNMCKLVEDPQVI-APFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHH-HTSSSHHHHHHHHHHHHHHHTTCCCHHHH-HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred Hhh-hccCcchhheeeEEEEcchhhhcCCHHHH-hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 664 566677889999999999998733 222 3334556666666665556899999999999999884
No 149
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00091 Score=60.25 Aligned_cols=188 Identities=10% Similarity=0.158 Sum_probs=124.6
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHH-HHhcCchhhhHHHh-cCChHHHHHHh-ccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHV-VLRESPPASNCLIQ-LGFLPLLLKQL-FGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL-~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
|-+.++ ++++.+|.+|+..|.. ++.+.+.....-.+ ...+..|...+ ++.+ ..++..|+. ++..|+
T Consensus 21 f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n--------~~v~~~A~~-al~~la 89 (249)
T 2qk1_A 21 FQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN--------IQAVALAAQ-SVELIC 89 (249)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC--------HHHHHHHHH-HHHHHH
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC--------HHHHHHHHH-HHHHHH
Confidence 344453 4689999999999999 88664432210001 13466777777 3443 457888888 787777
Q ss_pred CCchhhh-hhcc---cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchh
Q 015728 175 VGETESL-NLLN---EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEA 249 (401)
Q Consensus 175 ~~~~~~~-~~v~---~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~ 249 (401)
.+ .+ .-+. -.-.+|.++..++.....++..+..+|..++...+ ..... ..-..+++.|...|+ .+..+
T Consensus 90 ~~---l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~---~~~~~-~~l~~ll~~l~~~l~~k~~~v 162 (249)
T 2qk1_A 90 DK---LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD---PLASS-GRNEDMLKDILEHMKHKTPQI 162 (249)
T ss_dssp HH---HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC---TTCTT-CTTHHHHHHHHHHTTCSSHHH
T ss_pred Hh---cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc---ccccC-CcHHHHHHHHHHHHcCCChHH
Confidence 21 12 1221 01258899999988888999988888888832221 11110 002357888999884 56779
Q ss_pred HHHHHHHHHHhcCCCch-hHH---HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 250 SDAGVRAFSALCSTETN-RKT---LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n-~~~---iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
+..++.+|..+...... ... .+....+|.|.+++. +++.++++.|..+|..++.
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 99999999988843321 122 233569999999998 7889999999999998763
No 150
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.40 E-value=0.0002 Score=49.19 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=39.5
Q ss_pred CcccccccccccCCceEcCcc--c---cccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTG--Q---TYDRSSIEKWLAA-GNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cg--h---~fc~~Ci~~~~~~-~~~~CP~c~~~~~~ 59 (401)
+.-.|.||++...+|...||. + .|-..|+.+|+.. +..+||.|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 345799999887788878865 3 7899999999985 57889999987753
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.39 E-value=0.0071 Score=58.81 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhhcCCchhhhhhcccCC--chHHHHHHhhc---------------C--CHHHHHHHHHHHHHHHhcccch
Q 015728 162 VEESLSCVQKLLLVGETESLNLLNEES--KMESFIVLFEH---------------G--SCSIKKRLCHLVEVIISSSHET 222 (401)
Q Consensus 162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g--~i~~Lv~~L~~---------------~--~~~~~~~aa~~L~~l~s~~~~~ 222 (401)
+.-++. .|..|...+ ..|..+.+.+ .+++++.+++. + ..+.+.++..+++.| +...
T Consensus 185 ~~i~v~-~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~-- 259 (480)
T 1ho8_A 185 CYVCIR-LLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNP-- 259 (480)
T ss_dssp HHHHHH-HHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSH--
T ss_pred HHHHHH-HHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCH--
Confidence 444555 555454433 4455553333 36777654431 1 246688999999999 8875
Q ss_pred hhhhhhhccchHHH--HHHHHHcc--CCchhHHHHHHHHHHhcCCC-ch----hHHHHhcCcHHHHHHHHHhhccccchH
Q 015728 223 KELCCKLGKDDRLL--REIISLVH--HNSEASDAGVRAFSALCSTE-TN----RKTLVQEGAINGLIAYISNALTRERSL 293 (401)
Q Consensus 223 ~~~~~~i~~~~g~i--~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~-~n----~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 293 (401)
+....+... +++ +.|+.+++ ....+.+-++.+|+||.... ++ ...++-.|-+++++..|....=+|+++
T Consensus 260 -~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl 337 (480)
T 1ho8_A 260 -VFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEEL 337 (480)
T ss_dssp -HHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHH
T ss_pred -HHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHH
Confidence 556666543 433 67777784 34569999999999998644 22 233332233477888887543345666
Q ss_pred HHHHHHHHHHHhC-------CHhhH------------------------HHHHh-CCCcHHHHHHHHHhc----------
Q 015728 294 AAIAMARIEQLLA-------IENSK------------------------DALIN-NPNGVYALVKMVFRV---------- 331 (401)
Q Consensus 294 ~~~a~~~L~~La~-------~~~~~------------------------~~~~~-~~g~i~~Lv~~l~~~---------- 331 (401)
.+.--.....|.. -+++. .++-. +...+..|+++ +..
T Consensus 338 ~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~i-L~~~~~~~~~~~s 416 (480)
T 1ho8_A 338 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIEL-LQAKVRNGDVNAK 416 (480)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHH-HHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHH-HhhhccccccccC
Confidence 5554433333322 11222 22311 11257788884 442
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.++.....|+.=+..++.+.++.|..+-+-|+=..++.||.++ ++.+|..|...++.+-.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2444555566667778888888888888999999999999888 99999999998887755
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.35 E-value=0.029 Score=59.25 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=151.5
Q ss_pred hHHHHHHhhhhh-hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 94 SLSTLKHSLQSH-EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 94 ~~~~l~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+++.+.+-|-.. ++++..+-.|+..|......+-. . ++..|...|.+.+....+..++.++..|+- -|..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL-GLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASL-GIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHH-HHHH
Confidence 444444444322 34566777788777777665531 1 366777777654410000011335555555 5554
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEAS 250 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~ 250 (401)
+..+.. +...+..|..+|...+...++.|+.+|..+ -... ....++..|+..+ + .+...+
T Consensus 464 a~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli-~vGT----------gn~~ai~~LL~~~~e~~~e~vr 525 (963)
T 4ady_A 464 AAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLC-MLGT----------GKPEAIHDMFTYSQETQHGNIT 525 (963)
T ss_dssp HSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTC----------CCHHHHHHHHHHHHHCSCHHHH
T ss_pred HhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hccc----------CCHHHHHHHHHHHhccCcHHHH
Confidence 433221 112467778888777777777888888877 3322 1125677777776 3 345688
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
+.++.+|..+.... ...++.+++.|.. +.++.++-.++.++..-..... +..+|..|++.+..
T Consensus 526 R~aalgLGll~~g~--------~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTG-------n~~aIq~LL~~~~~ 588 (963)
T 4ady_A 526 RGLAVGLALINYGR--------QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTG-------NNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHTTTC--------GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCC--------hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHhcc
Confidence 88888888776432 2467788899984 4556666666666653332222 22356678886676
Q ss_pred cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
+.+..++..|+.+|..+...++ ..++.++.++....++.+|..|+.+|..+.
T Consensus 589 d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 7777899999999998876653 246677775544448999999999999885
No 153
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.30 E-value=0.012 Score=60.07 Aligned_cols=243 Identities=10% Similarity=0.027 Sum_probs=133.4
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
+.+.|+-+--.+..++..+++.-.. ++..+.+=|.+++ +.++..|+. .|.++.. ++.. .
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n--------~~ir~lALr-~L~~i~~--~e~~-----~ 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRN--------PTFMGLALH-CIANVGS--REMA-----E 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCC--------HHHHHHHHH-HHHHHCC--HHHH-----H
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCC--------HHHHHHHHH-HhhccCC--HHHH-----H
Confidence 4455555555555555444321111 1344444455544 447778888 7777752 2222 2
Q ss_pred CchHHHHHHh--hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728 188 SKMESFIVLF--EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 188 g~i~~Lv~~L--~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~ 264 (401)
..++.+...| .+.++.+|..|+.++.++ .... ...+ ...+.++.|..+|. .++.++.+|+.+|..++...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl-~~~~-----p~~~-~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRL-YRTS-----PDLV-PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHH-HHHC-----GGGC-CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHhC-----hhhc-CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 3478888888 778999999999999999 4322 1222 22367899999994 56679999999999998533
Q ss_pred chhHHHHhcCcHHHHHHHHHhhc-cc-------------cchHHHHHHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNAL-TR-------------ERSLAAIAMARIEQLLAI--ENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~-~~-------------~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l 328 (401)
.. .+ ...+|.+++.|..-- .+ ++-.+...+..|..++.. ++.+..+. ..+..++..+
T Consensus 219 ~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~ 291 (621)
T 2vgl_A 219 PE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKA 291 (621)
T ss_dssp HH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHH
T ss_pred hH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhh
Confidence 21 11 134555555543100 11 345667777777777752 34444333 1333343321
Q ss_pred HhcC----------ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 329 FRVS----------DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 329 ~~~~----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.... ...+.-.|+.++..+.. +++.+. .++..|..++.+. ++..|.-|...|..+..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLAS 358 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTT
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHh
Confidence 1100 11334445555555542 222221 2344555665544 56666666666665554
No 154
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.89 E-value=0.00016 Score=66.73 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=37.3
Q ss_pred cccccccccccCC----ceE----cCccccccHHhHHHHHHcC----------CCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTD----PVT----LCTGQTYDRSSIEKWLAAG----------NLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~----Pv~----~~Cgh~fc~~Ci~~~~~~~----------~~~CP~c~~~~~ 58 (401)
...|+||.+++.+ |.. ..|||.|...|+.+|+... ...||.|+.+++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4579999998876 432 3699999999999999851 146999998775
No 155
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.19 Score=42.45 Aligned_cols=214 Identities=13% Similarity=0.170 Sum_probs=137.2
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+.++.+.+.| .++-+-.|.+|+..+...++.-++...-+ +..|+.+++.+.. -.+-.+... .++.
T Consensus 32 ~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa-------IpltqeIa~-a~G~ 96 (253)
T 2db0_A 32 SVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA-------IPLTQEIAK-AFGQ 96 (253)
T ss_dssp HHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS-------HHHHHHHHH-HHHH
T ss_pred HHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc-------CchHHHHHH-HHhH
Confidence 3444444433 23345689999999999998877655544 5567777754432 223334445 6666
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 251 (401)
++.-.++ ++ .+.+|.+..=.+-|++..+.+.+.+|..+ .... -..+ .+++.-+..++. .+..-+.
T Consensus 97 la~i~Pe---~v--~~vVp~lfanyrigd~kikIn~~yaLeeI-aran-----P~l~---~~v~rdi~smltskd~~Dkl 162 (253)
T 2db0_A 97 MAKEKPE---LV--KSMIPVLFANYRIGDEKTKINVSYALEEI-AKAN-----PMLM---ASIVRDFMSMLSSKNREDKL 162 (253)
T ss_dssp HHHHCHH---HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHH-HHHC-----HHHH---HHHHHHHHHHTSCSSHHHHH
T ss_pred HHHhCHH---HH--HhhHHHHHHHHhcCCccceecHHHHHHHH-HHhC-----hHHH---HHHHHHHHHHhcCCChHHHH
Confidence 6533332 22 23467777777788999999999999999 5432 2222 356677788884 4545666
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
.|+..+..+. +|..+-+. -.+|.|..||. +.++-++..|+.+|.+|+..+..-+.++ +..|-+ +.+
T Consensus 163 ~aLnFi~alG---en~~~yv~-PfLprL~aLL~---D~deiVRaSaVEtL~~lA~~npklRkii-----~~kl~e--~~D 228 (253)
T 2db0_A 163 TALNFIEAMG---ENSFKYVN-PFLPRIINLLH---DGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEE--LND 228 (253)
T ss_dssp HHHHHHHTCC---TTTHHHHG-GGHHHHHGGGG---CSSHHHHHHHHHHHHHHHTSCHHHHHHH-----HHHHHH--CCC
T ss_pred HHHHHHHHHh---ccCccccC-cchHHHHHHHc---CcchhhhHHHHHHHHHHHHcCHHHHHHH-----HHHHHH--hcC
Confidence 6666665554 44444443 26888999998 7888999999999999997554444443 233444 455
Q ss_pred CChhHHHHHHHHHHHHhc
Q 015728 332 SDHEGSENAINSLMMICC 349 (401)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~ 349 (401)
.+..++......|..|.-
T Consensus 229 ~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 229 TSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 555677777777766543
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.45 E-value=0.73 Score=44.78 Aligned_cols=238 Identities=12% Similarity=0.122 Sum_probs=144.4
Q ss_pred hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCch---hhhhhccc-CCchHHHHH-HhhcCCHHHHHHHH
Q 015728 135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET---ESLNLLNE-ESKMESFIV-LFEHGSCSIKKRLC 209 (401)
Q Consensus 135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~---~~~~~v~~-~g~i~~Lv~-~L~~~~~~~~~~aa 209 (401)
...++..++.+|..... .++..+.+. ++.-|..+++ ....+..+ +.....+.. .+.+++.-.+..+.
T Consensus 75 ~~~~~~~~l~lL~~~~~-------~d~vqYvL~-Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~ 146 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDN-------EDCKKSVQN-LIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGF 146 (480)
T ss_dssp SSTTHHHHHHHHHSCCC-------HHHHHHHHH-HHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcCh-------HHHHHHHHH-HHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHH
Confidence 45678889999976553 567888888 7776665554 22333222 222222333 23333334445555
Q ss_pred HHHHHHHhcccchhhhhhhhccchHHHHHHHH------HccC--CchhHHHHHHHHHHhcCCCchhHHHHhcC--cHHHH
Q 015728 210 HLVEVIISSSHETKELCCKLGKDDRLLREIIS------LVHH--NSEASDAGVRAFSALCSTETNRKTLVQEG--AINGL 279 (401)
Q Consensus 210 ~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~------lL~~--~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G--~v~~L 279 (401)
.++..+ +... .+ . ...++.++. .|.. +...+.-++.+|..|...++.|..+.+.+ .+|++
T Consensus 147 ~l~~ll-~~~~----~~----~-~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l 216 (480)
T 1ho8_A 147 NVVSLL-VQNG----LH----N-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTL 216 (480)
T ss_dssp HHHHHH-TSTT----TC----C-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHH-hccC----Cc----c-HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHH
Confidence 454555 4322 11 1 233444443 3422 33456679999999999999999998653 58888
Q ss_pred HHHHHhhc--------------cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcH--HHHHHHHHhcCChhHHHHHHHH
Q 015728 280 IAYISNAL--------------TRERSLAAIAMARIEQLLAIENSKDALINNPNGV--YALVKMVFRVSDHEGSENAINS 343 (401)
Q Consensus 280 v~lL~~~~--------------~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i--~~Lv~~l~~~~~~~~~~~a~~~ 343 (401)
++++...- +...+++=.++-+++.|+-.++....+. ..+.+ +.|++.+.....+++.+.++.+
T Consensus 217 ~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~-~~~i~~~~~L~~i~k~s~KEKvvRv~la~ 295 (480)
T 1ho8_A 217 FKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISI 295 (480)
T ss_dssp HHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH-hcchHHHHHHHHHHHhhccchhHHHHHHH
Confidence 87776320 1123456678889999999988777775 55543 6777743333457899999999
Q ss_pred HHHHhcCC----HHHHH-HHHHcCcHHHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 015728 344 LMMICCDS----LQARE-EAICAGVLTQLLLLLQSQ--CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 344 L~~l~~~~----~~~~~-~~~~~g~v~~L~~ll~~~--~~~~~~~~A~~~L~~l~~ 392 (401)
|.|+...+ ..... .++..++ .+++..|+.. .++...+--..+...|.+
T Consensus 296 l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~ 350 (480)
T 1ho8_A 296 ILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILEN 350 (480)
T ss_dssp HHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Confidence 99998765 12223 3444555 5566666543 356666666666665555
No 157
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.14 E-value=0.0025 Score=48.65 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=28.3
Q ss_pred Cccccccccc-ccCCceE--cCccccccHHhHHHHH
Q 015728 11 HLFRCPISLD-LFTDPVT--LCTGQTYDRSSIEKWL 43 (401)
Q Consensus 11 ~~~~C~iC~~-~~~~Pv~--~~Cgh~fc~~Ci~~~~ 43 (401)
+++.|++|.+ ++.+|+. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4688999996 4788988 8899999999999843
No 158
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.77 E-value=0.13 Score=54.74 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=154.6
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--h-hhc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--L-NLL 184 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~-~~v 184 (401)
+.+++..|+..|..+...+...+ ....|.+..|.+.+.+..+ . |.|+. ++..|+...... . ..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~---------~-~~a~~-~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 27 TADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKT---------A-ANAMQ-AVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp CTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHH---------H-HHHHH-HHHHHTCTTTCCTTTHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCC---------H-HHHHH-HHHHHHHhcCCCCCcccch
Confidence 35677888889998887553221 1124677788887765431 2 77777 777777433221 1 112
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--CchhHHHHHHHHHHhcC
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--NSEASDAGVRAFSALCS 262 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~a~~aL~~Ls~ 262 (401)
. +.++.+++........+|..|..++..++...+ ...+ ..++|.|+..|.. .-+.+..|+.+|..|+.
T Consensus 94 ~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~-----~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 94 V--QLVPAICTNAGNKDKEIQSVASETLISIVNAVN-----PVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp H--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC-----GGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC-----HHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1 456777777666667888888777777743333 2222 3678999999942 34689999999999985
Q ss_pred CCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 263 TETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 263 ~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
.. ..++.. ...||.+.+.+. +...+++..|..++..+|..-.|+.. +..||.||+.|.+. + + ...+
T Consensus 164 ~~--~~~~~~~~~~~~p~~~~~~~---d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p-~-~-~~~~ 231 (986)
T 2iw3_A 164 AA--KDQVALRMPELIPVLSETMW---DTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP-T-E-VPET 231 (986)
T ss_dssp HS--HHHHHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT-T-H-HHHH
T ss_pred Hh--HHHHHHhccchhcchHhhcc---cCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh-h-h-hHHH
Confidence 43 233332 357888888887 67889999999999999865444432 24699999965543 3 2 3334
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..|.+-..-.. +-.. .-+=.+|.|..=|... +..++++++-+...++|
T Consensus 232 ~~~l~~~tfv~~-v~~~-~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 232 VHLLGATTFVAE-VTPA-TLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp HHHHTTCCCCSC-CCHH-HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCeeEee-ecch-hHHHHHHHHHhhhccC-cchhheeeEEEEcchhh
Confidence 555544332211 1000 0001234444445555 88899999999999887
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.079 Score=48.02 Aligned_cols=195 Identities=9% Similarity=0.027 Sum_probs=112.2
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc---hhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCC
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE---TKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~---~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~ 264 (401)
.+| |-+.|.+.+...|..|...|..+...... .++....+.. .++.+-..+ +.+..++..++.+|..+...-
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~---~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWR---DPTLFAQYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTS---CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 355 66788899999999999888776343210 0011111222 234445566 456678999999998876422
Q ss_pred c----hhHHH--HhcCcHHHHHHH-HHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH
Q 015728 265 T----NRKTL--VQEGAINGLIAY-ISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS 337 (401)
Q Consensus 265 ~----n~~~i--v~~G~v~~Lv~l-L~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~ 337 (401)
. .+... .-..++|.|++- |. +....+++.|..+|..++........ .+..++. .+...++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~---~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~-~l~~Knpkv~ 156 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLT---SSRATTKTQSMSCILSLCGLDTSITQ------SVELVIP-FFEKKLPKLI 156 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGG-GGGCSCHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHH-HHhccCHHHH
Confidence 1 12222 234567777765 55 55667888888888777632111111 1223333 3566788888
Q ss_pred HHHHHHHHHHhcCCH-H-HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 338 ENAINSLMMICCDSL-Q-AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 338 ~~a~~~L~~l~~~~~-~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
..++..|..+....+ . .-....-...++.+..++.+. ++.+|+.|..++..+-++.++.+
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCcch
Confidence 888888877643211 0 000111112334566667666 99999999999999988777543
No 160
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.21 E-value=0.014 Score=51.88 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=38.8
Q ss_pred cccccccccccCCceEc-CccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~ 59 (401)
...|.+|.++...-+.- .|++.|...|+.+|++.. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45799999988865554 399999999999999853 4689999987544
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.17 E-value=0.84 Score=40.48 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccCC
Q 015728 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEES 188 (401)
Q Consensus 110 ~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~g 188 (401)
.....|+..|+-+++ +++.|..+.+++..-.|--+|...+..+ ...-++-.+++ +.+.|. .++.+....+.+.+
T Consensus 71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r---~fE~LRLtsLG-VIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTR---PFEYLRLTSLG-VIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSH---HHHHHHHHHHH-HHHHHGGGCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCC---cchhhhhhHHH-HHHHHhccCcHHHHHHHHhhh
Confidence 455788888888886 5668888889998878888887665431 12335555666 555544 34445555556788
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch-------HHHHHHHHHc--cCCchhHHHHHHHHHH
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD-------RLLREIISLV--HHNSEASDAGVRAFSA 259 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~-------g~i~~Lv~lL--~~~~~~~~~a~~aL~~ 259 (401)
.||..++.++.|+.-.|.-|+.++.++ =.++ ..-..+.... ..+..+|.-+ +.++...++..++-..
T Consensus 146 iiplCLrime~GselSKtvAtfIlqKI-L~dd---~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlR 221 (268)
T 2fv2_A 146 IIPLCLRIMESGSELSKTVATFILQKI-LLDD---TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLR 221 (268)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH-HHSH---HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-hccc---hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998 4443 3333333221 1333344433 3455688888888888
Q ss_pred hcCCCchhHHHHh
Q 015728 260 LCSTETNRKTLVQ 272 (401)
Q Consensus 260 Ls~~~~n~~~iv~ 272 (401)
|+.++..|..+..
T Consensus 222 Lsdn~rar~aL~~ 234 (268)
T 2fv2_A 222 LSDNPRAREALRQ 234 (268)
T ss_dssp HTTSHHHHHHHHH
T ss_pred HhcCHHHHHHHHH
Confidence 8888877776654
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.014 Score=54.60 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=49.9
Q ss_pred cccccccccccCCceEc-Ccccc--ccHHhHHHHHHc-CCCCCCCCcccCCCCCCCCcHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTL-CTGQT--YDRSSIEKWLAA-GNLTCPVTMQTLHDPSIVPNHTLRHLINQ 74 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~-~Cgh~--fc~~Ci~~~~~~-~~~~CP~c~~~~~~~~~~~n~~l~~~i~~ 74 (401)
.+.||+....|..|+.- .|.|. |...-+.....+ +...||.|.+.+...++..+..+..++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 58999999999999984 79997 555544444332 57889999999988889999888777654
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.07 E-value=0.18 Score=46.45 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=92.6
Q ss_pred HHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHH
Q 015728 238 EIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDAL 314 (401)
Q Consensus 238 ~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~ 314 (401)
.+...+. ..+..+--+++++.|+..++..+..+.+. ...++..+.+. .+.+..++..++.++.|++.........
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~ 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence 4444442 23346888999999999999998888752 34555555422 1346678888888888998632110000
Q ss_pred HhCCCcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 315 INNPNGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 315 ~~~~g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
-.....+..+.. +++ ..+.++...++.+|.+|...+++.++.+..-|+-..+-.+......+++.+.+..+|.+
T Consensus 229 ~~~~~ll~~l~~-il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 229 EGKAQCLSLIST-ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 000012233333 333 35677888889999999987777765555566666555555553467888888887754
No 164
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.75 E-value=0.67 Score=45.94 Aligned_cols=242 Identities=9% Similarity=0.072 Sum_probs=144.1
Q ss_pred hcChHHHHHHHHHHHHHHhcCch--hhhHHHhcCChHHHHHHhc-cCCcc-cchhhhHHHHHHHHHHHHHhhcCCchhhh
Q 015728 106 EATLETKLQIVQKIHVVLRESPP--ASNCLIQLGFLPLLLKQLF-GKAES-KFSQVYVQFVEESLSCVQKLLLVGETESL 181 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~-s~~~~-~~~~~~~~~~~~a~~~~L~~l~~~~~~~~ 181 (401)
+.+++.|-.|+..||.+.+.... .|..-......-.|+.+|. +...+ ..|+.-.-|+|.++. +|..+ .+-+..
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ-tLGaL-~hLp~e- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY-LLSRI-YPLIGP- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH-HHHHH-TTTSCS-
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH-HHHHH-HhCChh-
Confidence 56899999999999999988753 1220001133334444442 22111 122223457787777 77765 332221
Q ss_pred hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHh
Q 015728 182 NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSAL 260 (401)
Q Consensus 182 ~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~L 260 (401)
-..+..++..+..+..+++..+...|.++ . +.-. .-.++++.++.-|+ .+.+++..||.+|.-+
T Consensus 262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~------DLL~---~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K------EFVE---DKDGLCRKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G------GGCC---CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H------HHHH---HHHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Confidence 23455555555777889999988888888 2 1111 13578888888884 5667999999999999
Q ss_pred cCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 261 CSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 261 s~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
+ .++... .++..+...|.+. ++-.......+..|+.|+..+.. ...++..||.|.- .++++-+.++..+
T Consensus 327 A-~p~~l~-----~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~P-FLRHtITSVR~AV 395 (800)
T 3oc3_A 327 P-ITDSLD-----LVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFP-CFTSPVPEVRTSI 395 (800)
T ss_dssp C-CSSTHH-----HHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGG-GGTCSSHHHHHHH
T ss_pred c-chhhHH-----HHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHh-hhcCCcHHHHHHH
Confidence 8 221111 2344455555531 11123445566777777765531 2235577888888 6788878899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHH-HhhcCCCHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLL-LLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~-ll~~~~~~~~~~~A~~~L~ 388 (401)
+.+|..+. +. .+++.+.+ +|-+. .+.+++.+..+.+
T Consensus 396 L~TL~tfL--~~---------~~LRLIFQNILLE~-neeIl~lS~~VWk 432 (800)
T 3oc3_A 396 LNMVKNLS--EE---------SIDFLVAEVVLIEE-KDEIREMAIKLLK 432 (800)
T ss_dssp HHHTTTCC--CH---------HHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHH--hh---------hHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 99998776 12 12333333 23233 6777777776664
No 165
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.72 E-value=0.62 Score=49.90 Aligned_cols=258 Identities=9% Similarity=0.060 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhcc----CCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG----KAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 110 ~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s----~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
..+..|...|..++..-+ +.+.. -.++.+-..+.. ++. +-..++.|+. ++..++..-.....-+.
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~------~w~~reaal~-algaia~~~~~~~~~~~ 444 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSK------NWKFKDLYIY-LFTALAINGNITNAGVS 444 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----------CHHHHHHHHH-HHHHHHBSSCCBTTBCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcch------hHHHHHHHHH-HHHHHHHHhccccCCcc
Confidence 356677777777776643 22211 123333344431 111 1235666677 77777532111110110
Q ss_pred ---c-CCchHH----HHHHhhcC---CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728 186 ---E-ESKMES----FIVLFEHG---SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG 253 (401)
Q Consensus 186 ---~-~g~i~~----Lv~~L~~~---~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a 253 (401)
. ....+. ++..|.++ ++-+|..|+++|..+ +..- .... ...+++.++..|. ++..++.+|
T Consensus 445 ~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~-~~~~----~~~~---l~~~l~~l~~~L~d~~~~V~~~A 516 (960)
T 1wa5_C 445 STNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF-RNQL----TKAQ---LIELMPILATFLQTDEYVVYTYA 516 (960)
T ss_dssp CBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT-GGGS----CHHH---HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred cccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH-HhhC----CHHH---HHHHHHHHHHHhCCCChhHHHHH
Confidence 0 022222 23334555 788999999999998 5421 1121 1356788888774 456799999
Q ss_pred HHHHHHhcCCCc---------hhHHHHh--cCcHHHHHHHHHhhccc----cchHHHHHHHHHHHHhCCHh-hHHHHHhC
Q 015728 254 VRAFSALCSTET---------NRKTLVQ--EGAINGLIAYISNALTR----ERSLAAIAMARIEQLLAIEN-SKDALINN 317 (401)
Q Consensus 254 ~~aL~~Ls~~~~---------n~~~iv~--~G~v~~Lv~lL~~~~~~----~~~~~~~a~~~L~~La~~~~-~~~~~~~~ 317 (401)
+.||.+++...+ .+..+.. ...++.|+.++.. .+ .....+.++.+|..++..-. .-....
T Consensus 517 ~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~--~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-- 592 (960)
T 1wa5_C 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK--HGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-- 592 (960)
T ss_dssp HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT--TCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--
T ss_pred HHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh--ccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--
Confidence 999999986422 2333321 2345555556653 10 11123566666666553211 111111
Q ss_pred CCcHHHHHHHHHh----cCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 318 PNGVYALVKMVFR----VSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 318 ~g~i~~Lv~~l~~----~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
...++.|+..+.. .+++........+|..+... +++.. .-.....++.+..+|+.. .....+.+..++..+.+
T Consensus 593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence 0234455553322 23444555677777777665 22222 334556678888888765 44566666666666655
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.61 E-value=0.028 Score=52.54 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=50.6
Q ss_pred cccccccccccCCceE-cCcccc--ccHHhHHHHHHc-CCCCCCCCcccCCCCCCCCcHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVT-LCTGQT--YDRSSIEKWLAA-GNLTCPVTMQTLHDPSIVPNHTLRHLINQ 74 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~-~~Cgh~--fc~~Ci~~~~~~-~~~~CP~c~~~~~~~~~~~n~~l~~~i~~ 74 (401)
.+.||+....|+.|+. ..|.|. |...-+.....+ +...||.|.+.+...++..+..+..++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 5799999999999998 479997 666555544433 56889999999988889999888887654
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.72 Score=41.49 Aligned_cols=178 Identities=11% Similarity=0.099 Sum_probs=105.8
Q ss_pred hcChHHHHHHHHHHHHHHhcCchh--hhHHH-hc-CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC--ch-
Q 015728 106 EATLETKLQIVQKIHVVLRESPPA--SNCLI-QL-GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG--ET- 178 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~--r~~i~-~~-G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~--~~- 178 (401)
+..+..|.+|+..|..+....+.. ..... .- ..++.+-..+.+.. ..++..++. ++..+... ..
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--------~~v~~~al~-~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--------VVAQEQAIV-ALNSLIDAFASSS 90 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--------HHHHHHHHH-HHHHHHTTCC---
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--------HHHHHHHHH-HHHHHHHHhhhhh
Confidence 467999999999999988765432 11111 12 24555666665444 458888888 55544421 11
Q ss_pred --hhhhhcccCCchHHHHHH-hhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHH
Q 015728 179 --ESLNLLNEESKMESFIVL-FEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGV 254 (401)
Q Consensus 179 --~~~~~v~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~ 254 (401)
.......-...++.|+.. |.++...++..+..++..++.... ...-+++.++..+ +.++.++..++
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHHHHHHHH
Confidence 111011112457777765 677788888888888877722211 1113445666666 45677888888
Q ss_pred HHHHHhcCC--Cc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 255 RAFSALCST--ET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 255 ~aL~~Ls~~--~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
..|..+-.. .. +....+. .+++.+..+|. +.+..++..|..++..+-.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG---HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT---CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh---CCcHHHHHHHHHHHHHHHH
Confidence 887776421 11 2222222 25566777888 7899999999999988764
No 168
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.79 E-value=3.4 Score=38.74 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=58.2
Q ss_pred HHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 237 REIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 237 ~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
..|.+=+ ++++-.+-.|+++|.++...+ +++ ...+++-+.|. +.++.++..|+-+...|..... .++
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~---d~~pyVRk~A~l~~~kL~~~~p---e~v 174 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIV---DKVPSVSSSALVSSLHLLKCSF---DVV 174 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTTCH---HHH
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcC---CCCHHHHHHHHHHHHHHhccCH---HHH
Confidence 3344433 333446666677776665422 111 24445555555 5667777777777776664321 133
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
. +.+..+-+ ++.+.++.++-+|+.+|..++.++
T Consensus 175 ~--~~~~~l~~-ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 175 K--RWVNEAQE-AASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H--TTHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHH-HhcCCCccHHHHHHHHHHHHHhhc
Confidence 3 56777766 466667777777777777777654
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.53 E-value=0.47 Score=42.08 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-----hhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHH
Q 015728 294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-----HEGSENAINSLMMICCDS-LQAREEAICAGVLTQL 367 (401)
Q Consensus 294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-----~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L 367 (401)
.-+|++.|-.+|.+++.|..++ ++...--|.- .++..+ +-.+-.++.++..|.+.+ +++..-+.+.+.||..
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl-~a~iplyLyP-fL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFL-AAHIPLFLYP-FLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHH-HHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHH-HccchHHhhh-hhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 4667888888999999999997 5664333333 333322 124555888888888764 4677778899999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728 368 LLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400 (401)
Q Consensus 368 ~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~ 400 (401)
+..|+.| ++.+|--|.-++..+-- .-+.|+|
T Consensus 151 Lrime~G-selSKtvAtfIlqKIL~-dd~GL~Y 181 (268)
T 2fv2_A 151 LRIMESG-SELSKTVATFILQKILL-DDTGLAY 181 (268)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHH-SHHHHHH
T ss_pred HHHHhhc-cHHHHHHHHHHHHHHhc-cchhHHH
Confidence 9999999 99999999999988876 5565554
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.44 E-value=2.3 Score=39.00 Aligned_cols=176 Identities=12% Similarity=0.051 Sum_probs=95.9
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHH----HHHhh-cCCHHHHHHHHHHH
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESF----IVLFE-HGSCSIKKRLCHLV 212 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~L----v~~L~-~~~~~~~~~aa~~L 212 (401)
.+..+.+++..+.. .+.-++- +++.+..+.... ..+.+...-..+ ...+. ++.+..+.-+.+++
T Consensus 104 ~l~~l~kil~WP~~---------~~fPvLD-LlRl~~l~p~~~-~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l 172 (304)
T 3ebb_A 104 QLQILWKAINCPED---------IVFPALD-ILRLSIKHPSVN-ENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTF 172 (304)
T ss_dssp HHHHHHHHHTSCTT---------TCHHHHH-HHHHHTTSHHHH-HHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHH---------hHHHHHH-HHHHHHcCccHH-HHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 45677777743332 4556666 777766554333 233222211222 23332 23556678888888
Q ss_pred HHHHhcccchhhhhhhhcc-chHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccc
Q 015728 213 EVIISSSHETKELCCKLGK-DDRLLREIISLVH-HNSEASDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTR 289 (401)
Q Consensus 213 ~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~ 289 (401)
.|+ -... ..+..+.. ...+++.+...+. .+..++.+++.+++|++..-. .+..=...-++..+..++.. ..
T Consensus 173 ~Nl-F~~~---~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~--~~ 246 (304)
T 3ebb_A 173 CNC-FVGQ---AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEV--VQ 246 (304)
T ss_dssp HHG-GGSH---HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTT--CC
T ss_pred HHc-cCCc---hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc--cC
Confidence 888 4443 55555542 2234455554543 344589999999999995211 11100011145555566654 45
Q ss_pred cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
+.+..-.++.+|.+|...+....++...-| +...++.+.+.
T Consensus 247 d~EalyR~LvALGtL~~~~~~~~~lak~l~-~~~~v~~~~~~ 287 (304)
T 3ebb_A 247 DLEATFRLLVALGTLISDDSNAVQLAKSLG-VDSQIKKYSSV 287 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhCChhHHHHHHHcC-HHHHHHHHHhC
Confidence 778889999999999975444444433333 33334334443
No 171
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.41 E-value=4.5 Score=39.25 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=87.0
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 237 REIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
..++...+++...++-|+..|.... ..++-... ++..++.|.. +.+..++..|+..|-.+|.+ +.-..+
T Consensus 32 ~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE---Ded~~IR~qaik~Lp~~ck~-~~i~ki- 101 (507)
T 3u0r_A 32 QVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE---DEDVSIRRQAIKELPQFATG-ENLPRV- 101 (507)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT---CSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh---cccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence 4444444667778888888888766 45555544 6778899998 77888999999999999987 543333
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
+..|++ |+...++.-....-.+|..|-+.++.. .+..|+..+..+ ++.+|+++...|+
T Consensus 102 -----aDvL~Q-lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 -----ADILTQ-LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLS 159 (507)
T ss_dssp -----HHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred -----HHHHHH-HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHH
Confidence 457888 566666566666667777776655432 344455555555 7788888777763
No 172
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.63 E-value=2.7 Score=37.69 Aligned_cols=138 Identities=6% Similarity=0.004 Sum_probs=90.9
Q ss_pred cCCchhHHHHHHHHHHhcC---CCchhHHHHhc-CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728 244 HHNSEASDAGVRAFSALCS---TETNRKTLVQE-GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN 319 (401)
Q Consensus 244 ~~~~~~~~~a~~aL~~Ls~---~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g 319 (401)
+.+..+...++.+|..+.. ..+.+-.--++ -.+|.|++-+. ++.+.+++.+..+|..++.. ..-..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG---d~k~~vR~~~r~il~~l~~v-------~~~~~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG---EAKDNMRTSVRDIVNVLSDV-------VGPLK 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHH-------HCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHH-------CCHHH
Confidence 4555666666666666531 11111111122 26888888887 67778888888888777631 11112
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVL---TQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v---~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
..+.+++ -+++.+.+.++.++..+..+-...+-. ...++ +.+..++.+. +..+|+.|...+-.+-++.||
T Consensus 168 v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 168 MTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhH
Confidence 3455666 357778889999988888775332211 34578 8888898776 999999999999988887777
Q ss_pred hh
Q 015728 397 EL 398 (401)
Q Consensus 397 ~~ 398 (401)
.+
T Consensus 241 ~v 242 (266)
T 2of3_A 241 QM 242 (266)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 173
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.70 E-value=2.4 Score=38.01 Aligned_cols=169 Identities=9% Similarity=0.158 Sum_probs=102.7
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcC-ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC--Cchhhhhh
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLG-FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV--GETESLNL 183 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~--~~~~~~~~ 183 (401)
.+...+.+|+..|......++ +..+...+ .++.+.--+.+.. ..+...++. +|..+.. .+.+.+ .
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N--------~~v~~~~L~-~L~~l~~~l~~~~y~-~ 125 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETN--------PAALIKVLE-LCKVIVELIRDTETP-M 125 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCC--------HHHHHHHHH-HHHHHHHHHHHTTCC-C
T ss_pred CCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHH-HHHHHHHHHHhcccc-c
Confidence 467788889999998876644 22222222 2232222222332 446666666 5554320 011111 1
Q ss_pred c-cc-CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHh
Q 015728 184 L-NE-ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSAL 260 (401)
Q Consensus 184 v-~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~L 260 (401)
. .+ .-.+|.|+..+..+...+|+.+-.+|..+ ... .....+.+.++.-+ +.+...+..++..|..+
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l-~~v----------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL-SDV----------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH-HHH----------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHH----------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1 11 23589999999777888998888888777 321 11224667777767 45666788887777776
Q ss_pred cCCCchhHHHHhcCcH---HHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 261 CSTETNRKTLVQEGAI---NGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 261 s~~~~n~~~iv~~G~v---~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
-....-. ...++ |.+.+++. +.+..++..|+.++..+-
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~---D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVG---DKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGG---CSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 5322211 23478 99999999 788899999999888654
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.88 E-value=22 Score=37.65 Aligned_cols=219 Identities=9% Similarity=0.008 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh---h--cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF---E--HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL 235 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L---~--~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~ 235 (401)
..+.++. ++..++..-.... ...++.++.++ . .+++.++..+.++|..+ +..-. .+...+ ..+
T Consensus 480 ~~eaal~-~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~-~~~l~--~~~~~l---~~v 547 (971)
T 2x1g_F 480 KLEACIY-SFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY-CNWLM--ENPAYI---PPA 547 (971)
T ss_dssp HHHHHHH-HHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHT-HHHHC------CH---HHH
T ss_pred HHHHHHH-HHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHH-HHHHh--cCHHHH---HHH
Confidence 5666777 6776663321111 12344444443 3 23778999999999988 53210 112222 356
Q ss_pred HHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhH
Q 015728 236 LREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSK 311 (401)
Q Consensus 236 i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~ 311 (401)
++.|+..|+ +.++..|+.++.+++... +..+.. .+.+..|.+++.+. ..+...+..+..++..++.. ++..
T Consensus 548 l~~l~~~l~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 548 INLLVRGLN--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHHH--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHhC--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 777777663 679999999999999432 333332 23444555555521 13457788888888887753 2343
Q ss_pred HHHHhCCCcHHHHHHHHH---hcC--ChhHHHHHHHHHHHHhcCCHHHH---------------HHHHHcCcHHHHHHHh
Q 015728 312 DALINNPNGVYALVKMVF---RVS--DHEGSENAINSLMMICCDSLQAR---------------EEAICAGVLTQLLLLL 371 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~---~~~--~~~~~~~a~~~L~~l~~~~~~~~---------------~~~~~~g~v~~L~~ll 371 (401)
..... ..+++++..+. ... ++......+..|..|+..-.... -.-.....++.+..++
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 700 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA 700 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence 33321 34455555332 111 22233444555544432100000 0112345677777777
Q ss_pred hcC-CCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 372 QSQ-CSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 372 ~~~-~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+.. .++...+.+.++++.+....++++
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~~~~~~ 728 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITNLRSSF 728 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 543 367899999999998877666554
No 175
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.78 E-value=0.41 Score=33.85 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCcccccccccccCCceEcC----ccccccHHhHHHHHHc----CCCCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLC----TGQTYDRSSIEKWLAA----GNLTCPV 52 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~----Cgh~fc~~Ci~~~~~~----~~~~CP~ 52 (401)
...+.|.+|.+-+.|-.... -+|.||-.|-..+.+. ....||-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 45789999999999876554 4699999999888775 2455665
No 176
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.72 E-value=0.43 Score=34.59 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=37.3
Q ss_pred CcccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..-.|.||.+-.- ++... .|+...|+.|++--.+.+...||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3468999998632 23333 5888899999987777789999999987753
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.33 E-value=14 Score=34.82 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=107.6
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhh-hHHHhcCChHHHHHHhccCCccc-c--hhhhHHHHHHHHHHHH
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPAS-NCLIQLGFLPLLLKQLFGKAESK-F--SQVYVQFVEESLSCVQ 170 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~~~-~--~~~~~~~~~~a~~~~L 170 (401)
...+++.|.+.. +.+.-..-+..|+...+..+..+ +.+. .+|+..|+.+|..-.... . ...+...+..++. -|
T Consensus 68 P~~yi~~L~~~~-~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~-CL 144 (383)
T 3eg5_B 68 AMMYIQELRSGL-RDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR-CL 144 (383)
T ss_dssp HHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHH-HH
T ss_pred HHHHHHHHHhcc-cchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHH-HH
Confidence 344455555442 22333456888888888877643 4444 678999999985311000 0 0012457778888 44
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh-hhhhh---------ccchHHHHHHH
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE-LCCKL---------GKDDRLLREII 240 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~-~~~~i---------~~~~g~i~~Lv 240 (401)
..+-........++.....|..+...|.+.++.++..+..+|..+ +..+..+. ....+ ++. .-..+++
T Consensus 145 kalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~l-c~~~~~~gG~~~VL~Al~~~~~~~e~-~RF~~lv 222 (383)
T 3eg5_B 145 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQPEDMNERVLEAMTERAEMDEV-ERFQPLL 222 (383)
T ss_dssp HHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHH-HTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHH
T ss_pred HHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHH-HhCcCcCCcHHHHHHHHHHHHHhCCC-CcHHHHH
Confidence 545445556666777788999999999999999999999998887 55431001 11111 111 2246678
Q ss_pred HHccC--CchhHHHHHHHHHHhcCCCc-------hhHHHHhcCcHHHHHHHHHh
Q 015728 241 SLVHH--NSEASDAGVRAFSALCSTET-------NRKTLVQEGAINGLIAYISN 285 (401)
Q Consensus 241 ~lL~~--~~~~~~~a~~aL~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~~ 285 (401)
..|+. +.+.+.++...+-.+...++ -|..+...|..+.+-. |+.
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 87843 33455544444444554333 2455556766665554 663
No 178
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.15 E-value=0.41 Score=35.12 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=37.0
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.-+.|..|....+. .+.+..|-+|..|+...+. .+..||.|+.++..+
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCC
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHHHh-hccCCcccCCcCCcc
Confidence 45789999886663 3445668889999988776 677899999998654
No 179
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.77 E-value=24 Score=37.32 Aligned_cols=220 Identities=9% Similarity=0.057 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh---hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF---EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L---~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i 236 (401)
..++.++. ++..++..-.. .+...++.++..+ .++++.++..+++++..+ +..-. .....+ ..++
T Consensus 464 ~~~eaal~-al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~-~~~l~--~~~~~l---~~vl 531 (963)
T 2x19_B 464 QHTEALLY-GFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL-SEWLA--DHPVMI---NSVL 531 (963)
T ss_dssp HHHHHHHH-HHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHT-HHHHH--HCHHHH---TTTH
T ss_pred HHHHHHHH-HHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH-HHHHH--hCHHHH---HHHH
Confidence 45666777 77766632211 0123345555544 335678899999999888 53210 222222 2467
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHH
Q 015728 237 REIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKD 312 (401)
Q Consensus 237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~ 312 (401)
+.|+..|.. +.++..|+.+|.+++... +..+.. ...+..|..++... .-+...+..+..++..++.. .+...
T Consensus 532 ~~l~~~l~~-~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN-PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC-GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC-chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 778877744 679999999999999422 222221 12333444445420 12456788888888888753 24444
Q ss_pred HHHhCCCcHHHHHHHHHh---c-CChhHHHH---HHHHHHHHhcCCH-----H----------------HHHHHHHcCcH
Q 015728 313 ALINNPNGVYALVKMVFR---V-SDHEGSEN---AINSLMMICCDSL-----Q----------------AREEAICAGVL 364 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~---~-~~~~~~~~---a~~~L~~l~~~~~-----~----------------~~~~~~~~g~v 364 (401)
..+. ..++.++..+.. . .++..+.. .+.+|..+...-. . ..........+
T Consensus 608 ~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 608 KNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence 3331 345555553221 1 23334443 3333433322100 0 00111233455
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 365 TQLLLLLQS-QCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 365 ~~L~~ll~~-~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
+.+..+++. ..+....+.+..+++.+....+++
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 666666643 225678888888888876654443
No 180
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.64 E-value=36 Score=36.12 Aligned_cols=227 Identities=10% Similarity=0.094 Sum_probs=121.4
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHH---h-cCChHHHHH----HhccCCcccchhhhHHHHHHHHHHHHHhhcCCch
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLI---Q-LGFLPLLLK----QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET 178 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~---~-~G~i~~Lv~----lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~ 178 (401)
.+...+..|+..+..++.........+. . ....+.|++ .|.++.+. ++.++..|++ ++..++..-
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~-----~p~vr~~a~~-~lg~~~~~~- 489 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP-----HIILRVDAIK-YIYTFRNQL- 489 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCS-----CHHHHHHHHH-HHHHTGGGS-
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCC-----CceehHHHHH-HHHHHHhhC-
Confidence 4567888899999988754321110000 0 022333333 34444211 2679999999 888776321
Q ss_pred hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-----hhh-hhhhhcc-chHHHHHHHHHccCC----c
Q 015728 179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-----TKE-LCCKLGK-DDRLLREIISLVHHN----S 247 (401)
Q Consensus 179 ~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-----~~~-~~~~i~~-~~g~i~~Lv~lL~~~----~ 247 (401)
..+.+ ...++.++..|.+++..++..|+.+|.++ ..... .++ .+..+.. ...+++.|+.++... .
T Consensus 490 -~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~-~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 490 -TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKI-LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp -CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHH-TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred -CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHH-HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence 11222 23577888888888889999999999999 54210 001 1233321 235677777777432 1
Q ss_pred --hhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhh--ccccchHHHHHHHHHHHHhCC--HhhHHHHHhCCCc
Q 015728 248 --EASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNA--LTRERSLAAIAMARIEQLLAI--ENSKDALINNPNG 320 (401)
Q Consensus 248 --~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~ 320 (401)
.....+..+|..+.. ..+.-...+. ..++.|+..+... +.++......++.+|..++.. ++....+. ...
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~ 642 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSM 642 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHH
Confidence 134566666666542 1121111222 2566666666531 123455666778888877754 33333332 245
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
+|.+.. ++........+.+..++..+.
T Consensus 643 ~p~~~~-iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 643 MPTFLT-VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHH-HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhhHhhHHHHHHHHHHHH
Confidence 566666 444433345555666655443
No 181
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=86.23 E-value=4 Score=35.70 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred hcCcHHHHHHHHHhhc-c-------ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728 272 QEGAINGLIAYISNAL-T-------RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS 343 (401)
Q Consensus 272 ~~G~v~~Lv~lL~~~~-~-------~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~ 343 (401)
..||+..|+.+|.... . .+...+..++.+|..+.....|...+..++++|..++. .+.+..+..+..++..
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~-~L~s~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHT-TCCTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHH
Confidence 4577888888886421 0 12355677889999999999999999889999988888 4677778888899999
Q ss_pred HHHHhcCCH-HH-HHHH----------HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 344 LMMICCDSL-QA-REEA----------ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 344 L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
|..+|..++ +. ...+ .+..-+..+++.+..+....-+-.+..++..+-.
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence 998886542 11 1111 1223455566666544344445445555544443
No 182
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.76 E-value=8.7 Score=40.77 Aligned_cols=173 Identities=12% Similarity=0.106 Sum_probs=99.6
Q ss_pred hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cCCchhHHHHHHHHHHhcCCCchhHHHHhc
Q 015728 198 EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HHNSEASDAGVRAFSALCSTETNRKTLVQE 273 (401)
Q Consensus 198 ~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~ 273 (401)
.+.+...++.+..++..+ +..-. + .. ...++.++..+ .+++.++..+.++|..++..-........
T Consensus 459 ~~~~w~~~eaal~al~~i-~~~~~--~---~~---~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~- 528 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSI-AETID--V---NY---SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN- 528 (963)
T ss_dssp CSCCHHHHHHHHHHHHHH-TTSCC--S---SC---CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-
T ss_pred CCCchHHHHHHHHHHHHH-HhhcC--c---hh---hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-
Confidence 344667888888889888 54321 1 11 13445555554 33455889999999988853221123333
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH---Hhc--CChhHHHHHHHHHHHHh
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV---FRV--SDHEGSENAINSLMMIC 348 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l---~~~--~~~~~~~~a~~~L~~l~ 348 (401)
.+++.|+..|. + +.++..|+.+|..++.. .+..+. ..++.++..+ +.. -+...+.....++..++
T Consensus 529 ~vl~~l~~~l~---~--~~V~~~A~~al~~l~~~--~~~~l~---p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 529 SVLPLVLHALG---N--PELSVSSVSTLKKICRE--CKYDLP---PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TTHHHHHHHTT---C--GGGHHHHHHHHHHHHHH--TGGGCT---TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---C--chHHHHHHHHHHHHHHH--HHHHHH---hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 57777777776 3 67899999999999952 222222 2344443322 332 24567888888888887
Q ss_pred cCCH-HHHHHHHHcCcHHHHHHHhh----cCCCHHHHHHHHHHHHHHH
Q 015728 349 CDSL-QAREEAICAGVLTQLLLLLQ----SQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 349 ~~~~-~~~~~~~~~g~v~~L~~ll~----~~~~~~~~~~A~~~L~~l~ 391 (401)
...+ +..... -...++++...++ .+.++..+.....++..++
T Consensus 599 ~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 599 SALQVEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 6432 333222 2334444544443 2335666666555555554
No 183
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.46 E-value=11 Score=32.96 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC--chhHHHHHHHHHHhcC--CCch
Q 015728 191 ESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN--SEASDAGVRAFSALCS--TETN 266 (401)
Q Consensus 191 ~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~a~~aL~~Ls~--~~~n 266 (401)
+..-.+.++...++|..|+.+|..+ .. . ..+++.+...+..+ =.++..++.++..++. +++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~------------~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK------------D-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT------------S-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC------------c-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 3334555677778998888877665 31 1 24667777756333 3589999999998874 333
Q ss_pred hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015728 267 RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMM 346 (401)
Q Consensus 267 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~ 346 (401)
+ .++.+...+. +++..++..|...+.--+..+ ....++.-+-+++..+..+.+.-++......|..
T Consensus 139 ~-------~l~~~~~W~~---d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 139 K-------ALPIIDEWLK---SSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp T-------THHHHHHHHH---CSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHhc---CCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 1 6677888888 788888888877654322211 1112333334444435666677789999999999
Q ss_pred HhcCCHHHHHHHHH
Q 015728 347 ICCDSLQAREEAIC 360 (401)
Q Consensus 347 l~~~~~~~~~~~~~ 360 (401)
+++.+++.....++
T Consensus 205 ~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 205 ISKKFPDLVKIELK 218 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhhhCHHHHHHHHH
Confidence 99999876545444
No 184
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=83.00 E-value=23 Score=30.75 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCccc-ch--hhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 113 LQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESK-FS--QVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 113 ~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~-~~--~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
..-+..|+...+.++.. -+.+ ..||+..|+..|..-.... .. ..+.+.+.+++.| |..+.........++..++
T Consensus 19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~C-Lkalmn~~~G~~~vl~~~~ 96 (233)
T 2f31_A 19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRC-LKAFMNNKFGIKTMLETEE 96 (233)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHH-HHHHTSSHHHHHHHHTSSS
T ss_pred HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-HHHHhCChHHHHHHHcCcH
Confidence 34566777666766653 2333 4678889999885321100 00 0135677788884 4445445555666777778
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhh-hhhhccc---------hHHHHHHHHHcc-CC-chhHHHHHHH
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKEL-CCKLGKD---------DRLLREIISLVH-HN-SEASDAGVRA 256 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~-~~~i~~~---------~g~i~~Lv~lL~-~~-~~~~~~a~~a 256 (401)
.+..+...|.+.+..++..+..+|..+ +..+.. +. ...+.++ ..-..+++..|+ .+ .+.+.++...
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~l-c~~~~~-~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~l 174 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQP-EDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQL 174 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHH-HTCSSS-SCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHH-HhCCCC-CChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHH
Confidence 899999999999999999998888887 554310 11 1111110 012345777774 22 3344444444
Q ss_pred HHHhcCCCc-------hhHHHHhcCcHHHHHHHHH
Q 015728 257 FSALCSTET-------NRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 257 L~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~ 284 (401)
+-.|...++ -|..+...|.-+.+ +-|+
T Consensus 175 IN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~ 208 (233)
T 2f31_A 175 INALITPAEELDFRVHIRSELMRLGLHQVL-QELR 208 (233)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHh
Confidence 444544443 24555566655544 4555
No 185
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.74 E-value=16 Score=33.99 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=87.2
Q ss_pred HHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728 257 FSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE 335 (401)
Q Consensus 257 L~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~ 335 (401)
|.||-.+++ ...-+|++++|..+-.+.. -.+.++.......|...+....-...- -...+|-++..+-..++.+
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvin---YpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQ---YPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTT---SSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcccccccceeecccceeEEEEee---cCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcc
Confidence 445555555 4778899999999999998 678888899999998887644332221 2356788888776777778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728 336 GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL 371 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll 371 (401)
+.-.....|.|...+...+++.++..|+|..|-..+
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 899999999999999888999999999999998875
No 186
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=81.10 E-value=36 Score=31.75 Aligned_cols=115 Identities=15% Similarity=0.258 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728 162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS 241 (401)
Q Consensus 162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~ 241 (401)
.-.+.. +|+.| .++++...=.+..++|..+-.++.-++.+........|... |... ..+..- ....+|+++.
T Consensus 260 vtR~FD-LL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV-SDak---sL~~t~--L~e~LPFi~~ 331 (619)
T 3c2g_A 260 IIRTFD-LLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV-SDAK---ALAKTP--LENILPFLLR 331 (619)
T ss_dssp HHHHHH-HHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH-TTCG---GGGTSC--CTTHHHHHHH
T ss_pred HHHHHH-HHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeee-cchH---HHhhcc--ccccchHHHH
Confidence 344445 66655 46666655455788999999999989998888888888887 6443 333332 2367899999
Q ss_pred Hc--cCCchhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHH
Q 015728 242 LV--HHNSEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 242 lL--~~~~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~ 284 (401)
.+ .++.++.-.....|.|...+... +...+..|+|+.|-..+.
T Consensus 332 ~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 332 LIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 99 56777999999999999887775 444578999999988875
No 187
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=81.06 E-value=25 Score=37.76 Aligned_cols=141 Identities=6% Similarity=0.022 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC----Cch--hHHHHHHHHHHhcCCCchhHHHHhc
Q 015728 200 GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH----NSE--ASDAGVRAFSALCSTETNRKTLVQE 273 (401)
Q Consensus 200 ~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~--~~~~a~~aL~~Ls~~~~n~~~iv~~ 273 (401)
.+...++.+.++++.+ +.....+..+..+ ..+++.|+.++.. +.. ++..++++|...+..-.....
T Consensus 465 ~~W~~~EA~~~a~gaI-a~~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~---- 536 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSI-SGTMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN---- 536 (1023)
T ss_dssp CCHHHHHHHHHHHHHT-TTSSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----
T ss_pred CCHHHHHHHHHHHHHH-HcCCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----
Confidence 4678999999999998 6543211123333 2567888888731 122 334555777666542222222
Q ss_pred CcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHh-C----CCcHHHHHHHHH---hcCChhHHHHHHHHH
Q 015728 274 GAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALIN-N----PNGVYALVKMVF---RVSDHEGSENAINSL 344 (401)
Q Consensus 274 G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~----~g~i~~Lv~~l~---~~~~~~~~~~a~~~L 344 (401)
.+++++..|-.. +++++.++..|++++..||.. .+..+.. + .-.++.++..+. ..-++.....+..++
T Consensus 537 -~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 537 -FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355555555422 145567999999999999963 2233321 1 123454444332 223445666777777
Q ss_pred HHHhcCC
Q 015728 345 MMICCDS 351 (401)
Q Consensus 345 ~~l~~~~ 351 (401)
..+....
T Consensus 614 ~~vi~~~ 620 (1023)
T 4hat_C 614 GIIISEE 620 (1023)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 7776653
No 188
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.91 E-value=69 Score=34.37 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=125.0
Q ss_pred CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
|.|.+.+..+...+-++ +.+.|.+|-..|..+-+. +.. ...+..+|.++.. +.++.-|+.
T Consensus 12 ~~dv~~Le~av~~ly~p--~~~~r~~A~~~L~~~q~s-p~a---------w~~~~~iL~~s~~-------~~vR~faa~- 71 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQG--SGVQQKQAQEILTKFQDN-PDA---------WQKADQILQFSTN-------PQSKFIALS- 71 (1023)
T ss_dssp CCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHC-TTG---------GGGHHHHHHHCCC-------HHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHcC-ccH---------HHHHHHHhcCCCC-------HHHHHHHHH-
Confidence 45555566555555433 334777777777665544 333 2233344533321 457887887
Q ss_pred HHHhhcCC-----chhhhhhcccCCchHHHHHHhhcC-----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 169 VQKLLLVG-----ETESLNLLNEESKMESFIVLFEHG-----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 169 ~L~~l~~~-----~~~~~~~v~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
+|.+.... +++.+..+ ....+..+...-.++ ..-++...+.++..+ ...+. -. .=.+.++-
T Consensus 72 ~Lk~~I~~~W~~L~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I-~~~~~----p~---~Wp~~l~d 142 (1023)
T 4hat_C 72 ILDKLITRKWKLLPNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI-LKQEW----PQ---NWPEFIPE 142 (1023)
T ss_dssp HHHHHHHHHGGGSCHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHH-HHHHT----TT---TCTTHHHH
T ss_pred HHHHHHHhhhhcCCHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH-HHHhC----hh---hchHHHHH
Confidence 66654321 12223233 222344343332111 234555677777777 43211 01 11367889
Q ss_pred HHHHccCCchhHHHHHHHHHHhcCC------C---chh-----HHHHhc--CcHHHHHHHHHhhccccchHHHHHHHHHH
Q 015728 239 IISLVHHNSEASDAGVRAFSALCST------E---TNR-----KTLVQE--GAINGLIAYISNALTRERSLAAIAMARIE 302 (401)
Q Consensus 239 Lv~lL~~~~~~~~~a~~aL~~Ls~~------~---~n~-----~~iv~~--G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~ 302 (401)
|+.+++.+.......+..|..|+.. . ..| ..+.+. .+++.+..+|.. ..+.++...++.+|.
T Consensus 143 L~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~--~~~~~l~~~~L~~l~ 220 (1023)
T 4hat_C 143 LIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ--GASSSLIVATLESLL 220 (1023)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 9998876656677777777776521 1 112 122221 234444455553 456678888889888
Q ss_pred HHhCCHhhHHHHHhCCCcHHHHH-HHHHhcCChhHHHHHHHHHHHHhc
Q 015728 303 QLLAIENSKDALINNPNGVYALV-KMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 303 ~La~~~~~~~~~~~~~g~i~~Lv-~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
.....-.. ..+. +...++.+. . ++. ++..++.|+.+|..+..
T Consensus 221 s~l~WI~i-~~i~-~~~ll~~l~~~-~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 221 RYLHWIPY-RYIY-ETNILELLSTK-FMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTTTSCT-HHHH-SSSHHHHHHTH-HHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCH-HHhc-chhHHHHHHHH-HcC--CHHHHHHHHHHHHHHHc
Confidence 87764322 2333 667888888 6 443 56789999999999986
No 189
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.20 E-value=55 Score=31.73 Aligned_cols=133 Identities=9% Similarity=0.072 Sum_probs=92.4
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
-.+.....|....++..+++-|.+-|.+..+.-|.-...- |..++.|..+.+. .++..|+. -|..+
T Consensus 27 ~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~--------~IR~qaik-~Lp~~ 92 (507)
T 3u0r_A 27 HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDV--------SIRRQAIK-ELPQF 92 (507)
T ss_dssp GHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSH--------HHHHHHHH-HGGGG
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccH--------HHHHHHHH-hhHHH
Confidence 3445566677777889999999999999999988765543 7788999888774 48999999 88888
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHH
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDA 252 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~ 252 (401)
+.+ +... .....|+++|++.+.......-.+|..|...+. .|.+..|..-+ .++..+++.
T Consensus 93 ck~-~~i~------kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp------------k~tl~~lf~~i~~~~e~~Rer 153 (507)
T 3u0r_A 93 ATG-ENLP------RVADILTQLLQTDDSAEFNLVNNALLSIFKMDA------------KGTLGGLFSQILQGEDIVRER 153 (507)
T ss_dssp CCT-TCHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHSCHHHHHH
T ss_pred hhh-hhhh------hHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh------------HHHHHHHHHHHcccchHHHHH
Confidence 865 2222 235667889998887666555566666523332 24455555544 455557888
Q ss_pred HHHHHHH
Q 015728 253 GVRAFSA 259 (401)
Q Consensus 253 a~~aL~~ 259 (401)
++..|..
T Consensus 154 ~lkFi~~ 160 (507)
T 3u0r_A 154 AIKFLST 160 (507)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=75.76 E-value=26 Score=33.00 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--h-HHHHH--------
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN--S-KDALI-------- 315 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~--~-~~~~~-------- 315 (401)
......+.+|+.|.-+......+.. .++|..|+..|. +.+..++..++..|..+|..++ | ...+.
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~---s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD---PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC---TTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC---CCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 3678889999999988887777765 568888888887 6777888889999998987543 5 43332
Q ss_pred -hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH------HHHHHHHHcCcHHHHHHH
Q 015728 316 -NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL------QAREEAICAGVLTQLLLL 370 (401)
Q Consensus 316 -~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~v~~L~~l 370 (401)
.+..-...+|+.+.+..+...+-.++..+-.|....+ ..|.++...|..+.|-.+
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 2333455577743223333333333333333333322 467788888887776555
No 191
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.12 E-value=61 Score=34.72 Aligned_cols=176 Identities=12% Similarity=0.111 Sum_probs=97.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcCC-----C
Q 015728 192 SFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCST-----E 264 (401)
Q Consensus 192 ~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~-----~ 264 (401)
.++..+.+++.+.|..|-..|..+ ...+ +++..+..+| +.+..++..|+..|.+.... +
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p-------------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKF-QDNP-------------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH-HHST-------------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHH-HhCc-------------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 334444566667788888888888 4332 3445566666 34556899999999987531 2
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccc-----cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTR-----ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN 339 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~-----~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~ 339 (401)
+.....++...+..+...-. ++ +..++...+.++..++...-- -.=++.++.|++. ++ +++...+.
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~---~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~-~~-~~~~~~~~ 156 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQ---DDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGS-SS-SSVNVCEN 156 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHH-HT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCC---ccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHH-Hc-cChHHHHH
Confidence 22222233333333333221 11 245677778888888754211 1235688899994 44 45456788
Q ss_pred HHHHHHHHhcCC---------HH----HHHHHHH--cCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 340 AINSLMMICCDS---------LQ----AREEAIC--AGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 340 a~~~L~~l~~~~---------~~----~~~~~~~--~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
+..+|..|+..- .. .+..+.. ...+..+..+++...+...+..|...+..+
T Consensus 157 ~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~ 222 (1049)
T 3m1i_C 157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRY 222 (1049)
T ss_dssp HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 888888876320 01 1111222 112334455555554566777776666543
No 192
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=74.96 E-value=56 Score=30.67 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=86.8
Q ss_pred HHHHHHHHHcc-----C-------CchhHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhccccchHHHHHHHH
Q 015728 234 RLLREIISLVH-----H-------NSEASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALTRERSLAAIAMAR 300 (401)
Q Consensus 234 g~i~~Lv~lL~-----~-------~~~~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~~~a~~~ 300 (401)
+++..|+.+|. . +...+...+++|+.|.-+......+++ ...|..|+..|. +....++..++..
T Consensus 109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~---s~~~~~~~~aleL 185 (383)
T 3eg5_B 109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD---PAVPNMMIDAAKL 185 (383)
T ss_dssp HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC---TTSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC---CCchHHHHHHHHH
Confidence 34577777761 1 124677889999999988888888876 568999999888 6778899999999
Q ss_pred HHHHhCCHh--h-HHHHH---------hCCCcHHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCH------HHHHHHHHc
Q 015728 301 IEQLLAIEN--S-KDALI---------NNPNGVYALVKMVFRV-SDHEGSENAINSLMMICCDSL------QAREEAICA 361 (401)
Q Consensus 301 L~~La~~~~--~-~~~~~---------~~~g~i~~Lv~~l~~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~ 361 (401)
|..+|..++ | ...+. .+..-...+|.. ++. .+...+-.+...+-.+....+ ..|.++...
T Consensus 186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~-L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~ 264 (383)
T 3eg5_B 186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG-LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL 264 (383)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT-TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH-HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 999996543 3 44333 223345566763 443 333333333333333433322 467777788
Q ss_pred CcHHHHHHHhhcC
Q 015728 362 GVLTQLLLLLQSQ 374 (401)
Q Consensus 362 g~v~~L~~ll~~~ 374 (401)
|..+.+-. |+..
T Consensus 265 Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 265 GLHQVLQE-LREI 276 (383)
T ss_dssp THHHHHHH-HTTS
T ss_pred ChHHHHHH-HhcC
Confidence 88777766 4443
No 193
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.66 E-value=56 Score=30.07 Aligned_cols=198 Identities=12% Similarity=0.116 Sum_probs=133.6
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh-hhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHHHHhc
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK-ELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAFSALC 261 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~-~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL~~Ls 261 (401)
..+.+..|+..|..=+-+.|..++.+..++......++ .....+... |-++..| + ++++..-.+-..|+...
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~----peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ----QNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC----THHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC----HHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 45778888888888888999999988888733221000 011122222 2333333 3 35567778888888888
Q ss_pred CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHH-hCC-CcHHHHHHHHHhcCChhHHH
Q 015728 262 STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALI-NNP-NGVYALVKMVFRVSDHEGSE 338 (401)
Q Consensus 262 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~-~~~-g~i~~Lv~~l~~~~~~~~~~ 338 (401)
.++.-...+...+.+-.+.+.+. .++-++...|..++..|- .+..--..+. .+. -.+...-+ |+.+++.-.+.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~---~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~-Ll~S~NYVTkR 227 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVE---MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEK-LLHSENYVTKR 227 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTT---CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH-HTTCSSHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhc---CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHH-HhcCCcchhHH
Confidence 88888888888888888888888 688889999999998665 3443333332 122 23445555 78888889999
Q ss_pred HHHHHHHHHhcCCH--HHHHHHH-HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 339 NAINSLMMICCDSL--QAREEAI-CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 339 ~a~~~L~~l~~~~~--~~~~~~~-~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.++..|..|-.+.. .+...-+ +..-+..++.+|++. +...+-.|-.+.+.+--
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 99999999876522 2222222 344456677778777 99999999998887753
No 194
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.30 E-value=7.2 Score=38.86 Aligned_cols=121 Identities=7% Similarity=0.081 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcc-cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLN-EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
++.-++- .|..+ ++++. -.+.++.++.-|+..+.++|..||.+|.-+ + .. . ....++..|
T Consensus 279 VRHGGLL-GLKYL-------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI-A-~p------~---~l~~LL~iL 339 (800)
T 3oc3_A 279 VQFSGLI-ALGYL-------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHF-P-IT------D---SLDLVLEKC 339 (800)
T ss_dssp HHHHHHH-HHHHT-------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS-C-CS------S---THHHHHHHH
T ss_pred ehhhhHH-HHHHH-------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhh-c-ch------h---hHHHHHHHH
Confidence 5555555 55554 22331 134577777788888999999999999888 5 11 1 112445555
Q ss_pred HHHc-c-CCc-hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 240 ISLV-H-HNS-EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 240 v~lL-~-~~~-~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
-..| + ++. .........|..|+..+.+ ...+...||.|...|+ +.-..++...+.+|..+.
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLR---HtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFT---SPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGT---CSSHHHHHHHHHHTTTCC
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhc---CCcHHHHHHHHHHHHHHH
Confidence 5555 2 332 2445555566666655532 1122478888888888 677789999999888776
No 195
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=72.57 E-value=1.2 Score=39.48 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=31.6
Q ss_pred HHhcCChhHHHHHHHHH-----HHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 328 VFRVSDHEGSENAINSL-----MMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
++++.+..++..++..| ..+..+ +..+|..+...-+.+.|..| +++ ...+|+.|...|
T Consensus 178 ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 178 MTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp STTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHc-cCC-CHHHHHHHHHHh
Confidence 45556666666655432 222222 23566666655555555444 444 778888776543
No 196
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=72.39 E-value=0.83 Score=26.91 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=11.9
Q ss_pred CcccccccccccCCce
Q 015728 11 HLFRCPISLDLFTDPV 26 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv 26 (401)
+-|.||+|+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3588888888877663
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.26 E-value=1.1e+02 Score=32.77 Aligned_cols=211 Identities=9% Similarity=0.021 Sum_probs=114.2
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC-----chhhh
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG-----ETESL 181 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~-----~~~~~ 181 (401)
.+.+.|.+|-..|..+-. ++ ++...+..+|.++.+ ..++.-|+. +|.+.... +++.+
T Consensus 28 p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~-------~~vr~~aa~-~Lk~~i~~~W~~l~~~~~ 89 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTN-------PQSKFIALS-ILDKLITRKWKLLPNDHR 89 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSC-------HHHHHHHHH-HHHHHHHHTGGGSCHHHH
T ss_pred CChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCC-------HHHHHHHHH-HHHHHHHhhCccCCHHHH
Confidence 344567778777776643 33 334455566644332 457888888 77755421 11222
Q ss_pred hhcccCCchHHHHHHhhcC-----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHH
Q 015728 182 NLLNEESKMESFIVLFEHG-----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRA 256 (401)
Q Consensus 182 ~~v~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~a 256 (401)
..+ ....+..+...-..+ +..++...+.++..| +..+. - ..=.++++.|+..++.+...+..+..+
T Consensus 90 ~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~I-a~~~~----p---~~Wp~ll~~L~~~~~~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 90 IGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI-LKQEW----P---QNWPEFIPELIGSSSSSVNVCENNMIV 160 (1049)
T ss_dssp HHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH-HHHHT----T---TTCTTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHH-HHHhC----c---ccchHHHHHHHHHHccChHHHHHHHHH
Confidence 222 111222222221111 356777788888888 43321 0 111367888998886554566777777
Q ss_pred HHHhcCC-----Cc----hh-----HHHHhc--CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCc
Q 015728 257 FSALCST-----ET----NR-----KTLVQE--GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNG 320 (401)
Q Consensus 257 L~~Ls~~-----~~----n~-----~~iv~~--G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~ 320 (401)
|..|+.. .+ .| ..+.+. .+++.+..+|.. ..+..++..++.++......-.... +. +...
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~--~~~~~~~~~aL~~l~~~l~wi~~~~-~~-~~~l 236 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ--GSSSSLIVATLESLLRYLHWIPYRY-IY-ETNI 236 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTHH-HH-SSSH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhhCCHHH-Hh-hhhH
Confidence 7777621 11 11 222221 123334445553 3455688888888877655332222 32 4556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCD 350 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~ 350 (401)
++.+.+.++. ++..+..|+.+|..+...
T Consensus 237 l~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 6666643332 567888899999888754
No 198
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.60 E-value=67 Score=30.13 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=101.6
Q ss_pred HHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCccc-ch--hhhHHHHHHHHHHHHH
Q 015728 96 STLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESK-FS--QVYVQFVEESLSCVQK 171 (401)
Q Consensus 96 ~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~-~~--~~~~~~~~~a~~~~L~ 171 (401)
...++.|.+.. +.+.-..-+..|+...+.++.. -+.+ ..||+..|+..|..-.... .. ..+.+.+.+++.|+ .
T Consensus 7 ~~yv~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CL-k 83 (386)
T 2bnx_A 7 MMYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL-K 83 (386)
T ss_dssp HHHHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-H
Confidence 33444455432 2222234567777777776653 2233 3678888988885321100 00 01356778888844 4
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhh-hhhhcc---------chHHHHHHHH
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKEL-CCKLGK---------DDRLLREIIS 241 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~-~~~i~~---------~~g~i~~Lv~ 241 (401)
.+.....+...++...++|..+...|.+.++.++..+..+|..+ +..+.. +. ...+.. ...-..++|.
T Consensus 84 almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~al-c~~~~~-~G~~~~VL~Al~~~~~~~e~~RF~~lv~ 161 (386)
T 2bnx_A 84 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQP-EDMNERVLEAMTERAEMDEVERFQPLLD 161 (386)
T ss_dssp HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHH-HTCCSS-TTHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHH-HcCCCC-CChHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 45445555566777778899999999988999998888888887 554310 11 111111 0112345777
Q ss_pred Hcc-CC-chhHHHHHHHHHHhcCCCc-------hhHHHHhcCcHHHHHHHHH
Q 015728 242 LVH-HN-SEASDAGVRAFSALCSTET-------NRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 242 lL~-~~-~~~~~~a~~aL~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~ 284 (401)
.+. ++ .+.+.++...+-.|...++ -|..+...|.-+.+ +-|+
T Consensus 162 ~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr 212 (386)
T 2bnx_A 162 GLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELR 212 (386)
T ss_dssp HTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHT
T ss_pred HHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHh
Confidence 774 32 3444444444444554443 25556666665554 5555
No 199
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=71.23 E-value=1.2e+02 Score=33.03 Aligned_cols=211 Identities=13% Similarity=0.100 Sum_probs=110.0
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC-----chhhh
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG-----ETESL 181 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~-----~~~~~ 181 (401)
++.+.|.+|-..|..+-...+ +...+...|.+.+.. ..++.-|+. +|.+.... +++.+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~----------~~~~~~~~L~~~s~~------~~vR~~A~~-~Lk~~I~~~W~~l~~e~k 87 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCP----------ICVPCGLRLAEKTQV------AIVRHFGLQ-ILEHVVKFRWNGMSRLEK 87 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT----------THHHHHHHHTSTTSC------HHHHHHHHH-HHHHHHHHSGGGSCHHHH
T ss_pred CChHHHHHHHHHHHHHHhCch----------HHHHHHHHHHccCCC------HHHHHHHHH-HHHHHHHHhcccCCHHHH
Confidence 456678888888877644332 233333334322222 557777777 77654311 12223
Q ss_pred hhcccCCchHHHHHHhhc-------CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHH
Q 015728 182 NLLNEESKMESFIVLFEH-------GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGV 254 (401)
Q Consensus 182 ~~v~~~g~i~~Lv~~L~~-------~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~ 254 (401)
..+ . ..++..+.+ ....++...+.++..| ...+. - ..=.++++.|+.+++.+......++
T Consensus 88 ~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I-a~~d~----p---~~Wp~ll~~L~~~~~~~~~~~e~~L 154 (1204)
T 3a6p_A 88 VYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEM-IKREW----P---QHWPDMLIELDTLSKQGETQTELVM 154 (1204)
T ss_dssp HHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH-HHHHS----T---TTCTTHHHHHHHHHHTCHHHHHHHH
T ss_pred HHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHH-HHHhC----c---ccchHHHHHHHHHhcCCHHHHHHHH
Confidence 233 1 223333322 3467888888888888 43321 1 1113678888888865555677788
Q ss_pred HHHHHhcCC---C----chhH-----HHHhc--CcHHHHHHHHHhhc----------------cccchHHHHHHHHHHHH
Q 015728 255 RAFSALCST---E----TNRK-----TLVQE--GAINGLIAYISNAL----------------TRERSLAAIAMARIEQL 304 (401)
Q Consensus 255 ~aL~~Ls~~---~----~n~~-----~iv~~--G~v~~Lv~lL~~~~----------------~~~~~~~~~a~~~L~~L 304 (401)
.+|..|+.. . ..|. .+.+. .+++.+..+|.... ..+..+...++.++...
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 888888632 1 1111 12221 23444444454210 01223455555555544
Q ss_pred hCCHhhHHHHHhCC-CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 305 LAIENSKDALINNP-NGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 305 a~~~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
...-.. ..+.... ..++.+.. ++. ++..+..|+.+|..|....
T Consensus 235 l~Wi~~-~~i~~~~~~ll~~l~~-~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 235 IDWVSM-SHITAENCKLLEILCL-LLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTSCH-HHHHTTTSHHHHHHHH-GGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HhccCH-HHHHhccchHHHHHHH-HcC--CHHHHHHHHHHHHHHHhCC
Confidence 332111 2222221 24555554 333 4578899999999998754
No 200
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.15 E-value=13 Score=30.47 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
+..|.+. ++.+++..+-.|+.+|-.+..+. ...+.++.....+..|+.++.....+.+|+++..+++.....+
T Consensus 54 ~ral~kr-l~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 54 LKAIMKR-VNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 4455554 45677888888999998888774 4566677777888888888875446789998888776655433
No 201
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=70.11 E-value=1.2e+02 Score=32.36 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=107.5
Q ss_pred hHHHHHHhhhhhhc-ChHHHHHHHHHHHHHHhcC-ch----hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHH
Q 015728 94 SLSTLKHSLQSHEA-TLETKLQIVQKIHVVLRES-PP----ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLS 167 (401)
Q Consensus 94 ~~~~l~~~l~~~~~-~~~~~~~a~~~L~~l~~~~-~~----~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~ 167 (401)
.-.....+|..... +.+.|.-|+..|.+..+.- +. .+..| +.-.+..+.. ....... +-++.+...
T Consensus 41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ll~~l~~-~~~~~~~------~~IrnKL~~ 112 (980)
T 3ibv_A 41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDSVWSYIKE-LSFLDEP------AYISNAVQH 112 (980)
T ss_dssp HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHHHHHHHHH-CCSTTSC------THHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHHHHHHHHH-hcCCCCc------HHHHHHHHH
Confidence 44555556655433 6889999999999888732 22 34333 3333443333 1100111 336666666
Q ss_pred HHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcc--c----c-------hhhhhhhhccc-
Q 015728 168 CVQKLLLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSS--H----E-------TKELCCKLGKD- 232 (401)
Q Consensus 168 ~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~--~----~-------~~~~~~~i~~~- 232 (401)
++..+...+-.. .=.+.++.++..+++++. ........+|..| +.. + . +.+.+..+...
T Consensus 113 -~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i-~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~ 186 (980)
T 3ibv_A 113 -LLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSI-GDEIADSLVLKTDVQIQKDNLVKDAIRAND 186 (980)
T ss_dssp -HHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHCCCCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHh-HHHHHhcccccCHHHHhhhHHHHHHHHhcc
Confidence 666555322000 113567788888876543 2333333344433 111 0 0 00113333221
Q ss_pred -hHHHHHHHHHc----c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 233 -DRLLREIISLV----H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 233 -~g~i~~Lv~lL----~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
.-+++....+| . .+......++.+|......-+ ...+++.+.++.+.++|. . ++++..|+.+|..+..
T Consensus 187 ~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~---~--~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 187 MSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ---I--EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT---S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC---C--hHHHHHHHHHHHHHHH
Confidence 01234444444 2 455678888888887665432 455667778888888877 3 5789999999998874
Q ss_pred ---CHhhHHHHH
Q 015728 307 ---IENSKDALI 315 (401)
Q Consensus 307 ---~~~~~~~~~ 315 (401)
.++.+..++
T Consensus 261 k~~~~~~k~~li 272 (980)
T 3ibv_A 261 KKMKPLEKLNLL 272 (980)
T ss_dssp SCCCHHHHHHHH
T ss_pred cCCChhhHHHHH
Confidence 344554444
No 202
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=65.32 E-value=15 Score=32.03 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=83.4
Q ss_pred HHHHHHc-c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHH
Q 015728 237 REIISLV-H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKD 312 (401)
Q Consensus 237 ~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~ 312 (401)
..|..-| . +..+++-.|+.+|..+ . -...+++.+...+.. +++=.+++.+..++..++. +++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~--D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSK--DNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGG--CSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHhcCHH---
Confidence 4445444 4 3456888888887777 2 112245555553443 5566889998888887764 222
Q ss_pred HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..++.+.. ..++.+..++..|+..+.--+.... . ..--.-+++.|-.+. .+.+.-+|+..++.|+-++|
T Consensus 139 ------~~l~~~~~-W~~d~n~~VRR~Ase~~rpW~~~~~-~--k~dp~~ll~iL~~L~-~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ------KALPIIDE-WLKSSNLHTRRAATEGLRIWTNRPY-F--KENPNEAIRRIADLK-EDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------TTHHHHHH-HHHCSSHHHHHHHHHHTCSGGGSTT-T--TTCHHHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHH-HhcCCCHHHHHHHHHhhHHHhccch-h--hcCHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhh
Confidence 24566666 5777888888888777643222210 0 000011233333344 44489999999999999999
Q ss_pred hhHHhh
Q 015728 393 KWAEEL 398 (401)
Q Consensus 393 ~~~e~~ 398 (401)
+.||-.
T Consensus 208 ~~Pd~V 213 (240)
T 3l9t_A 208 KFPDLV 213 (240)
T ss_dssp TCHHHH
T ss_pred hCHHHH
Confidence 999854
No 203
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.13 E-value=17 Score=31.56 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
++..|.+. +.+.++..+-.|+.+|-.+..+.+ ....++.....+..|..++.....+.+|+++..+++..+..+
T Consensus 46 a~ral~kr-l~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKK-VNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 34456664 456788899999999988887744 456677777777888888876656789998888877666543
No 204
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=63.93 E-value=5.8 Score=27.16 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=33.3
Q ss_pred CCCcccccccccccCCceEc--CccccccHHhHHHHHHc---CCCCCCCCcccC
Q 015728 9 IPHLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQTL 57 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~~ 57 (401)
....-.|.+|.+- ..+.. .|...|...|+...+.. +...||.|....
T Consensus 9 ~~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3446679999873 33444 48899999999765553 568899996543
No 205
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=61.87 E-value=98 Score=28.44 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+-+.++.+.....++.+.....|...++ ..=-..|..++.. -+. +++.-.+-. +|+....++.-.+-++
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g-Ye~------~diAl~~G~-mLRecir~e~la~~iL- 161 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG-YES------PEIALNCGI-MLRECIRHEPLAKIIL- 161 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG-GGS------TTTHHHHHH-HHHHHHTSHHHHHHHH-
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh-hcc------chhHhHHHH-HHHHHHHhHHHHHHHh-
Confidence 6788999999999999987765544433 1122233333322 211 334444445 7776666655555455
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc-chHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK-DDRLLREIISLV-HHNSEASDAGVRAFSALCST 263 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~ 263 (401)
..+.+..+.+.++.++=++-..|..++..|...... -....+.. ..-++...-.|| ++++-.+++++..|..|-.+
T Consensus 162 ~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~--lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld 239 (341)
T 1upk_A 162 WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKL--LSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD 239 (341)
T ss_dssp HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHH--HHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHH--HHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhC
Confidence 667788999999999889999999999888333210 11222221 113455666777 57788999999999999998
Q ss_pred CchhHHHHh----cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728 264 ETNRKTLVQ----EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE 308 (401)
Q Consensus 264 ~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 308 (401)
..|..-|.. ..-+-.++-+|+ +.+..++-.|..+.-....++
T Consensus 240 r~N~~vM~~Yis~~~nLkl~M~LL~---d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 240 RHNFTIMTKYISKPENLKLMMNLLR---DKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp GGGHHHHHHHTTCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHhCCHHHHHHHHHHhc---CchhchhhhhhhheeeeeeCC
Confidence 888766653 345777788888 678888888988877666543
No 206
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=61.29 E-value=3.5 Score=33.04 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=29.8
Q ss_pred cccccccccccCCceEc--CccccccHHhHHHHHH----------cCCCCCCCCcc
Q 015728 12 LFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLA----------AGNLTCPVTMQ 55 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~----------~~~~~CP~c~~ 55 (401)
+..|.+|.+--. +.. .|..+||..|+.+-+. .+...||.|..
T Consensus 63 ~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 567888887332 222 5889999999986542 36788999953
No 207
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=60.83 E-value=1.8e+02 Score=31.45 Aligned_cols=225 Identities=8% Similarity=0.047 Sum_probs=122.3
Q ss_pred CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
|.|.+.+..+...+- +++.+.|.+|-..|..+ +.++..+... ..+|..+.. +.++.-|+.
T Consensus 24 ~~Dv~~Le~lv~~ly--~p~~~~r~qA~~~L~q~-q~sp~aw~~~---------~~iL~~s~~-------~~vR~fAa~- 83 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLY--HGEGAQQRMAQEVLTHL-KEHPDAWTRV---------DTILEFSQN-------MNTKYYGLQ- 83 (1073)
T ss_dssp CCSHHHHHHHHHTTT--CSSHHHHHHHHHHHHTS-SCCSCHHHHH---------TCC---CCS-------HHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH-HcCchHHHHH---------HHHhcCCCC-------HHHHHHHHH-
Confidence 455555555554443 33466677777777554 4445444332 222333221 568888888
Q ss_pred HHHhhcCC-----chhhhhhcccCCchHHHHHHhhc-----CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 169 VQKLLLVG-----ETESLNLLNEESKMESFIVLFEH-----GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 169 ~L~~l~~~-----~~~~~~~v~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
+|.+.... +++.+..+ ....+..+...-.+ .+...+...+.++..+ ...+. -. .=...++-
T Consensus 84 ~L~~~I~~~W~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I-~k~~~----P~---~Wp~fi~d 154 (1073)
T 3gjx_A 84 ILENVIKTRWKILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQI-LKQEW----PK---HWPTFISD 154 (1073)
T ss_dssp HHHHHHHHTGGGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHH-HHHHT----TT---TCTTHHHH
T ss_pred HHHHHHHhhhhhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHH-HHHhC----hh---hccHHHHH
Confidence 77654421 12222223 22233333333222 2345666777777777 43211 00 11357788
Q ss_pred HHHHccCCchhHHHHHHHHHHhcCC--C-------ch-----hHHHHhcCcHHHHHHH----HHhhccccchHHHHHHHH
Q 015728 239 IISLVHHNSEASDAGVRAFSALCST--E-------TN-----RKTLVQEGAINGLIAY----ISNALTRERSLAAIAMAR 300 (401)
Q Consensus 239 Lv~lL~~~~~~~~~a~~aL~~Ls~~--~-------~n-----~~~iv~~G~v~~Lv~l----L~~~~~~~~~~~~~a~~~ 300 (401)
++.+++.+.......+.+|..|+.. + .. +..+.+ -+|.++.+ |.+ ..+.++...++.+
T Consensus 155 Lv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~--~~~~~lv~~~L~~ 230 (1073)
T 3gjx_A 155 IVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMEN--SQNAPLVHATLET 230 (1073)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcc--cCCHHHHHHHHHH
Confidence 8887755555677788888877632 1 01 222322 24444444 443 4566777888899
Q ss_pred HHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 015728 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350 (401)
Q Consensus 301 L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~ 350 (401)
|..+..+-.-. .++ +.+.++.|+-..+ +++..+..|+.+|..|...
T Consensus 231 L~~~~sWI~i~-~i~-~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 231 LLRFLNWIPLG-YIF-ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHTTTSCTH-HHH-SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHH-Hhc-cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 99888764332 343 5677776642133 4668899999999998764
No 208
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.83 E-value=21 Score=28.25 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..+.+. +.++++..+-.|+.+|-.+..+.+ ....++.....+..|+.++... .+.+|++...++...+.
T Consensus 44 ~rai~Kr-l~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRR-VNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 4455554 456777888888888888877754 4555666666777788887655 78899988888876554
No 209
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.39 E-value=0.32 Score=35.90 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=26.7
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
..||.|...+.. .=++.+|..|-..+. ....||.|++++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE--MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE--EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhh--ccccCcchhhHHH
Confidence 789999987652 123445888854332 2456999998764
No 210
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.12 E-value=6 Score=30.60 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=35.7
Q ss_pred cccccccccccCC---ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728 12 LFRCPISLDLFTD---PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61 (401)
Q Consensus 12 ~~~C~iC~~~~~~---Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~ 61 (401)
-|+|..|...+.+ .....=|..||..|..+.+.. ...|..|..++....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 4899999998863 334456778999999887652 226999998887543
No 211
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.96 E-value=28 Score=29.89 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..|.+. +.++++.++..|+.+|-.+..+.+ ..+.++.....+..|+.++.......+|+++..+++....
T Consensus 44 ~r~l~kr-l~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKK-MNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4455564 456788899999999999888865 4666777777888888888766567888887777665544
No 212
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.31 E-value=32 Score=27.80 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHH-HHHHhhc--CCCHHHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQ-LLLLLQS--QCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~-L~~ll~~--~~~~~~~~~A~~~L~~l~~ 392 (401)
+..|.+.|....++..+-.|+.+|-.+..+. ...+.++.....+.. |+.++.. .....+|+++..++...+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4456665433466778888999998888775 456667777788887 7888743 2235788877666655444
No 213
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=55.46 E-value=58 Score=35.09 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=53.9
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-----CchhHHHHHHHHHHh--
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-----NSEASDAGVRAFSAL-- 260 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~a~~aL~~L-- 260 (401)
.++..+.+++.++.....+ |+.+|..+..... .....+..+..++.. ++.++..+.-++..|
T Consensus 356 ~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~----------Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~ 424 (1056)
T 1lsh_A 356 EALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ----------ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVF 424 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC----------CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC----------CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHH
Confidence 3566677777777655444 4444443311111 123456666666632 233555555555444
Q ss_pred --cCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhC
Q 015728 261 --CSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 261 --s~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~ 306 (401)
|.....+ ....|+.+.+.|... ...+.+-+..++.+|.|+..
T Consensus 425 k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 425 RYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 4332221 113356666655421 13456667888999999853
No 214
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=54.23 E-value=13 Score=26.60 Aligned_cols=49 Identities=4% Similarity=0.057 Sum_probs=32.9
Q ss_pred CCCCCcccccccccccCCceE--cCccccccHHhHHHHHH---------------cCCCCCCCCcc
Q 015728 7 MTIPHLFRCPISLDLFTDPVT--LCTGQTYDRSSIEKWLA---------------AGNLTCPVTMQ 55 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~--~~Cgh~fc~~Ci~~~~~---------------~~~~~CP~c~~ 55 (401)
..++.+-.|+||...=.+-.. .-|+..|...|+.+.-- .....||.|..
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 346678899999864333222 24889999999988511 12478999953
No 215
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.63 E-value=38 Score=27.81 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQS-----QCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~ 392 (401)
+..|.+. ++++++.++-.|+.+|-.+..+.+ ..+.++.....+..|+.++.. .....+|+++..++.....
T Consensus 52 ~ral~kr-l~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHK-IQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456664 456788899999999999988854 567678788888889998853 1246888887777766554
No 216
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=53.53 E-value=36 Score=36.03 Aligned_cols=132 Identities=8% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCC-----Cch
Q 015728 194 IVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCST-----ETN 266 (401)
Q Consensus 194 v~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~-----~~n 266 (401)
+..+.+++.+.|..|-..|..+ ... .+++..+..+|. .+..++..|+..|.+.... ++.
T Consensus 13 l~~~~~~d~~~r~~A~~~L~~~-~~~-------------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 78 (971)
T 2x1g_F 13 VVSFYRSNSQNQAITHEWLTDA-EAS-------------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPE 78 (971)
T ss_dssp HHHHHTSTTTC----CHHHHHT-TTS-------------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-HcC-------------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHH
Confidence 3334456666777777788777 433 366778888883 3556899999999986531 222
Q ss_pred hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC------ChhHHHHH
Q 015728 267 RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS------DHEGSENA 340 (401)
Q Consensus 267 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~------~~~~~~~a 340 (401)
....++.-.+..+...- .++..++.....+|..++...-. .-++.++.|+.. ++.+ ++...+.+
T Consensus 79 ~~~~ir~~ll~~l~~~~----~~~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~-~~~~~~~~~~~~~~~~~~ 148 (971)
T 2x1g_F 79 NREELKQKILESIVRFA----GGPKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINT-FQNQRMPNVSADVQLWIM 148 (971)
T ss_dssp GHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHTTC-----C------HHHHH-HHHTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHH-HhccccccCCCHHHHHHH
Confidence 22223333444333322 12467888888888888854222 134577888884 4443 34577888
Q ss_pred HHHHHHHhc
Q 015728 341 INSLMMICC 349 (401)
Q Consensus 341 ~~~L~~l~~ 349 (401)
+.+|..|+.
T Consensus 149 l~iL~~l~E 157 (971)
T 2x1g_F 149 LEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHH
Confidence 888887763
No 217
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.02 E-value=30 Score=21.57 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHH-c----CCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA-A----GNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~-~----~~~~CP~c~~~~~~ 59 (401)
...+.|++|...|... .-+..... . ..+.|+.|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 4568899988877653 33334332 1 35789999987753
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=51.73 E-value=33 Score=27.53 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=52.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQS-----QCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~ 393 (401)
++..|.+. +.+.++..+-.|+.+|-.+..+.+ ....++.....+..|+.++.. ...+.+|++...+++..+..
T Consensus 49 a~ral~kr-l~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHK-IQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556665 456788899999999988877754 456677777888889988853 23568888877777665543
No 219
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=51.37 E-value=2.5e+02 Score=29.86 Aligned_cols=217 Identities=9% Similarity=0.034 Sum_probs=116.1
Q ss_pred hhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC--Cchh---
Q 015728 105 HEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV--GETE--- 179 (401)
Q Consensus 105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~--~~~~--- 179 (401)
.+++++.|.+|-..|..+-+. +..+ .....+|.++... +..++.-|+. +|.+... ++++
T Consensus 18 p~sd~~~r~~A~~~L~~~q~s-p~aw---------~~~~~iL~~~~~~-----~~~vr~fa~~-~L~~~I~~l~~e~~~~ 81 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSS-STGW---------KICHEIFSEKTKY-----KPSTRLICLQ-TLSEKVREWNNESNLL 81 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHS-TTHH---------HHHHHHTTCTTTS-----CHHHHHHHHH-HHHHHHHHCCTTTSHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-hhHH---------HHHHHHHhCCCCC-----CHHHHHHHHH-HHHHHHHhCChhhhHH
Confidence 445688888888888776654 3332 2334555443210 1557887877 6664321 1110
Q ss_pred hhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc-hhHHHHHHH
Q 015728 180 SLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS-EASDAGVRA 256 (401)
Q Consensus 180 ~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~-~~~~~a~~a 256 (401)
.+..+ ....+..+...-. .+..-++...+.+|..+ ..... - ..=.+.++-|+.++. ++. ......+++
T Consensus 82 ~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l-~~~~~----p---~~Wp~~i~~l~~~~~~~~~~~~~~~~Lri 152 (980)
T 3ibv_A 82 ELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLL-FLQLY----P---SNWNDFFASLQGVIAASSQSEFSNFYLKV 152 (980)
T ss_dssp HHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH-HHHHT----T---TTCTTHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH-HHHhC----c---ccCchHHHHHHHHhcCCChhHHHHHHHHH
Confidence 22222 1112222222100 23456788888888888 43210 0 011357788888884 333 345555666
Q ss_pred HHHhcC---C-C-----c--h-----hHHHHhcC---cHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHh
Q 015728 257 FSALCS---T-E-----T--N-----RKTLVQEG---AINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALIN 316 (401)
Q Consensus 257 L~~Ls~---~-~-----~--n-----~~~iv~~G---~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~ 316 (401)
|..|+. + . . . +..+.+.. +++....+|... ...+..+...++.+|......-.. ..++
T Consensus 153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~- 230 (980)
T 3ibv_A 153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIV- 230 (980)
T ss_dssp HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHH-
T ss_pred HHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhh-
Confidence 664431 1 0 0 1 22222221 255556666421 024567778888888877764322 3333
Q ss_pred CCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 317 NPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 317 ~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
+...++.+.+ ++. ++..++.|+.+|..+....
T Consensus 231 ~~~ll~~l~~-~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 231 NEPCMNLLYS-FLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp CHHHHHHHHH-HTT--SHHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHH-HcC--ChHHHHHHHHHHHHHHHcC
Confidence 5566777776 443 4688999999999987664
No 220
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.32 E-value=6.2 Score=29.14 Aligned_cols=13 Identities=15% Similarity=0.613 Sum_probs=11.7
Q ss_pred cccHHhHHHHHHc
Q 015728 33 TYDRSSIEKWLAA 45 (401)
Q Consensus 33 ~fc~~Ci~~~~~~ 45 (401)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 221
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=51.24 E-value=4.3 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=10.8
Q ss_pred CcccccccccccCCce
Q 015728 11 HLFRCPISLDLFTDPV 26 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv 26 (401)
..+.||+|+..+-|+-
T Consensus 2 ~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCEECTTSSCEESSHH
T ss_pred CcccCccccccCcChH
Confidence 3567888877776653
No 222
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.08 E-value=8.5 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=27.5
Q ss_pred cccccccccCCceE---cCccccccHHhHHHHHHcCCCCCCCC
Q 015728 14 RCPISLDLFTDPVT---LCTGQTYDRSSIEKWLAAGNLTCPVT 53 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~---~~Cgh~fc~~Ci~~~~~~~~~~CP~c 53 (401)
.|-.|+..|.++.. ..|++.||..|= .+..+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 58889998876543 359999999993 3333344679987
No 223
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.85 E-value=6.4 Score=29.02 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=11.6
Q ss_pred cccHHhHHHHHHc
Q 015728 33 TYDRSSIEKWLAA 45 (401)
Q Consensus 33 ~fc~~Ci~~~~~~ 45 (401)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 224
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=50.14 E-value=1.6 Score=38.57 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHhcCChhHHHHHHHHH-----HHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728 328 VFRVSDHEGSENAINSL-----MMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
++++.++.++..++..+ ..+..+ +.++|..+...-..+.|..+++++ ...+|+.++..+.
T Consensus 154 l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~-d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 154 FMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDP-DWTVRLAAVEHAS 219 (244)
T ss_dssp TTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCS-SHHHHHHHHHHSC
T ss_pred HHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 56777777777777653 222222 346787777777778888888776 8888888887653
No 225
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=48.34 E-value=2.6e+02 Score=30.17 Aligned_cols=182 Identities=11% Similarity=0.130 Sum_probs=101.7
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcCC---
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCST--- 263 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~--- 263 (401)
.+..++..+.+++.+.|..|-..|..+ .... +++..+..+| + .++.++-.|+..|.+.-..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~sp-------------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHL-KEHP-------------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTS-SCCS-------------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HcCc-------------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 466667777777888888888888777 4332 4566666677 2 3556899999999987532
Q ss_pred --CchhHHHHhcCcHHHHHHHHHhhc--cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728 264 --ETNRKTLVQEGAINGLIAYISNAL--TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN 339 (401)
Q Consensus 264 --~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~ 339 (401)
++.....++...+..+...-.+.. ..++.+....+.++..++...-.. .=+..++-+++ +.+. ++...+.
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~-~~~~-~~~~~~~ 168 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVG-ASRT-SESLCQN 168 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHH-HHHH-CHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHH-HhCC-CHHHHHH
Confidence 223333344445555554433100 013455666777777776432100 13467888888 4443 3467778
Q ss_pred HHHHHHHHhcC---C--H--------HHHHHHHHcCcHHHHH----HHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 340 AINSLMMICCD---S--L--------QAREEAICAGVLTQLL----LLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 340 a~~~L~~l~~~---~--~--------~~~~~~~~~g~v~~L~----~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.+.+|..|+.. . . ..+..+... ++.++ .+++...++.....+...|+.+..
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~s 236 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLN 236 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 88888887643 0 0 122223322 33444 345444456666666666665544
No 226
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.25 E-value=43 Score=26.75 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=52.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhc---C--CCHHHHHHHHHHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQS---Q--CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~---~--~~~~~~~~A~~~L~~l~~ 392 (401)
++..+.+. ++++++..+-.|+.+|-.+..+. .....++.....+..|+.++.. | ....+|+++..++...+.
T Consensus 39 a~rai~kr-l~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHK-IQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556665 46778889999999999988874 4677778788888889888863 1 256788877666655444
No 227
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=47.97 E-value=11 Score=24.97 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=24.1
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHH----cCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA----AGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~----~~~~~CP~c~~~~~~ 59 (401)
.|.|++|...|... .-+..... ..++.|+.|++.+..
T Consensus 4 py~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 47888888877764 22333222 246789999988764
No 228
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.94 E-value=0.89 Score=32.59 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=19.5
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
..||.|...+..- =++.+|..|-..+-. ...||.|++++
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~--~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSL--QALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEE--EEECSSSCSCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCC--cccCcchhhHH
Confidence 5688887765421 123335555332211 22577776665
No 229
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=46.71 E-value=6.9 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCccCCCCCCcccccccccccCCceEcCccccccHHh
Q 015728 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSS 38 (401)
Q Consensus 2 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~C 38 (401)
+++....+.+..+|+-|. .|..|. +.||.+|
T Consensus 3 ~~D~di~~~D~WkC~~C~-~~N~Pl-----~r~C~rC 33 (46)
T 2c6a_A 3 EEDPEISLADYWKCTSCN-EMNPPL-----PSHCNRC 33 (46)
T ss_dssp CCCSSSCGGGCEECTTTC-CEECSS-----CSSCTTT
T ss_pred ccCCccCccceEeccccc-ccCCCc-----cchhhHH
Confidence 456666677899999999 466664 4556555
No 230
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=46.63 E-value=14 Score=23.26 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=23.0
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.+.|++|...|.....+. .-+........+.|+.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-------~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-------IHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-------HHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-------HHHHHcCCCCCcCCCCCcchhCC
Confidence 478999988887642210 00111111245779999887654
No 231
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.60 E-value=1.7e+02 Score=26.52 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcc-cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhc-cchHHH
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLN-EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLG-KDDRLL 236 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~-~~~g~i 236 (401)
.+..+.|+. -|.-++.+-...-+++. +-..+..|+ +..+.....++.|+++|......++ .....|. .-...+
T Consensus 42 ~~~le~aLD-~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP---~Al~~V~~~~p~fv 116 (315)
T 3qml_C 42 IARLEDSFD-RIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP---PVVEFINESFPNFK 116 (315)
T ss_dssp HHHHHHHHH-HHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHCTTHH
T ss_pred HHHHHHHHH-HHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH---HHHHHHHHhChhHH
Confidence 335677888 77778865555555663 333344444 3344566789999999887534443 3333222 112333
Q ss_pred HHHH----HHccC----CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccc--cchHHHHHHHHHHHHh
Q 015728 237 REII----SLVHH----NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR--ERSLAAIAMARIEQLL 305 (401)
Q Consensus 237 ~~Lv----~lL~~----~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~--~~~~~~~a~~~L~~La 305 (401)
..+. .++.. ....++.-+.+|-.|..++. .+ ...++..|++++. .. +...+..++..+..+=
T Consensus 117 ~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~---~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 117 SKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYE---RNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHH---HTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHc---cCCCCHHHHHHHHHHHHHHc
Confidence 3333 33311 22488888999999998762 12 2457788999987 34 6778888877777554
No 232
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=45.69 E-value=8.3 Score=39.93 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCce--------E--cCccccc--------------------cHHhHHHHHHc-------CCCCCC
Q 015728 9 IPHLFRCPISLDLFTDPV--------T--LCTGQTY--------------------DRSSIEKWLAA-------GNLTCP 51 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv--------~--~~Cgh~f--------------------c~~Ci~~~~~~-------~~~~CP 51 (401)
.|+.-.|+-|...+.||- + +.||..| |..|..+|-.. .+..||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 467789999999887754 3 4577543 89999998553 356799
Q ss_pred CCcccCC
Q 015728 52 VTMQTLH 58 (401)
Q Consensus 52 ~c~~~~~ 58 (401)
.|+-.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9997763
No 233
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=45.68 E-value=3.1e+02 Score=29.38 Aligned_cols=129 Identities=6% Similarity=-0.002 Sum_probs=74.7
Q ss_pred hHHHHHH----hhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC------C--chhHHHHHHHH
Q 015728 190 MESFIVL----FEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH------N--SEASDAGVRAF 257 (401)
Q Consensus 190 i~~Lv~~----L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~------~--~~~~~~a~~aL 257 (401)
++.+.+. +.+++.+.+..+..+|+|+ .. ...++.|..++.+ + ..++.+|.+||
T Consensus 438 v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~-g~--------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 438 LQPLHDLLSQSSDRAKEEEIVLALKALGNA-GQ--------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TC--------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcc-CC--------------hhHHHHHHHhhcCccccccccchHHHHHHHHHH
Confidence 4555544 4566777777888888888 42 1356777777732 1 24777899999
Q ss_pred HHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH
Q 015728 258 SALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS 337 (401)
Q Consensus 258 ~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~ 337 (401)
+.+.... ... +-+.++++..+. ..+.+++-.|+.+|..- ++. ...+..++..+....+..+.
T Consensus 503 r~~~~~~---p~~----v~~il~~i~~n~-~e~~EvRiaA~~~Lm~t--~P~--------~~~l~~ia~~l~~E~~~QV~ 564 (1056)
T 1lsh_A 503 RNIAKRD---PRK----VQEIVLPIFLNV-AIKSELRIRSCIVFFES--KPS--------VALVSMVAVRLRREPNLQVA 564 (1056)
T ss_dssp TTGGGTC---HHH----HHHHHHHHHHCT-TSCHHHHHHHHHHHHHT--CCC--------HHHHHHHHHHHTTCSCHHHH
T ss_pred HHhhhhc---hHH----HHHHHHHHhcCC-CCChHHHHHHHHHHHHH--CcC--------HHHHHHHHHHHhhCchHHHH
Confidence 9888432 111 334678888642 44566776666665432 221 11233444433333455566
Q ss_pred HHHHHHHHHHhcCC
Q 015728 338 ENAINSLMMICCDS 351 (401)
Q Consensus 338 ~~a~~~L~~l~~~~ 351 (401)
......|.+|+...
T Consensus 565 sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 565 SFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcC
Confidence 66666666766553
No 234
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.14 E-value=1.9 Score=39.51 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=31.2
Q ss_pred CCcccccccccccCCceEc----Ccc--ccccHHhHHHHHHcCCCCCCCCccc
Q 015728 10 PHLFRCPISLDLFTDPVTL----CTG--QTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~----~Cg--h~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
...-.||+|+..-.--+.. .=| +-+|..|-..|-- ....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 5567999999855433333 234 4568889887754 34579999875
No 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.59 E-value=12 Score=28.82 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=34.4
Q ss_pred CcccccccccccCC-ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTD-PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~-Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+-|.|..|...+.. +....=|..||..|..+.+ ...|+.|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 45899999998775 3345567889999986643 3569999988874
No 236
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.16 E-value=4.4 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=17.9
Q ss_pred cccccccccC-----CceEcC-ccccccHHhHHHH
Q 015728 14 RCPISLDLFT-----DPVTLC-TGQTYDRSSIEKW 42 (401)
Q Consensus 14 ~C~iC~~~~~-----~Pv~~~-Cgh~fc~~Ci~~~ 42 (401)
-||-|...+. .+++-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998877553 234433 7888877775544
No 237
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.86 E-value=20 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=24.9
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
+.+.|++|...|... .-+...... .++.|+.|++.|..
T Consensus 27 ~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 457788888877754 334444432 35779999887764
No 238
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.97 E-value=8.5 Score=39.97 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCce--------E--cCccccc--------------------cHHhHHHHHHc-------CCCCCC
Q 015728 9 IPHLFRCPISLDLFTDPV--------T--LCTGQTY--------------------DRSSIEKWLAA-------GNLTCP 51 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv--------~--~~Cgh~f--------------------c~~Ci~~~~~~-------~~~~CP 51 (401)
.|+.-.|+-|...+.||- + +.||..| |..|-.+|-.. .+..||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 467789999998887754 3 3477654 88999998654 356799
Q ss_pred CCcccCC
Q 015728 52 VTMQTLH 58 (401)
Q Consensus 52 ~c~~~~~ 58 (401)
.|+-.+.
T Consensus 183 ~CGP~l~ 189 (772)
T 4g9i_A 183 VCGPSYR 189 (772)
T ss_dssp TTSCCEE
T ss_pred cCCceEE
Confidence 9997753
No 239
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=42.37 E-value=15 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=22.5
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
+.|++|...|..+. -+...... ..+.|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPS-----------MLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHH-----------HHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHH-----------HHHHHHHhcCCCCCccCCCCCchhcC
Confidence 57888888777642 22222221 34679999887753
No 240
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.17 E-value=7.7 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.7
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5788899999975
No 241
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.03 E-value=16 Score=24.45 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=24.2
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHH----cCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA----AGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~----~~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|.... -+..... ...+.|+.|.+.+..
T Consensus 13 k~~~C~~C~k~f~~~~-----------~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSS-----------ILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEESSHH-----------HHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccCCHH-----------HHHHHHHhcCCCCCeECCCCCcccCC
Confidence 4688999888777542 2222222 145779999887653
No 242
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.50 E-value=11 Score=24.35 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.3
Q ss_pred CCCCCccccccccc
Q 015728 7 MTIPHLFRCPISLD 20 (401)
Q Consensus 7 ~~~~~~~~C~iC~~ 20 (401)
.++++++.||+|..
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 35788899999986
No 243
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=41.43 E-value=96 Score=25.10 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=49.7
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls 261 (401)
++..|.+.|.++++.++..|..+|-.++..-. +.+...|+. ..++..|+++++ .++.++..++..|..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG--~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG--KIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC--HHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh--HHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 46677788888999999888888877743322 256666765 478899999884 34557777777766554
No 244
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.28 E-value=1e+02 Score=24.54 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=52.1
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-------CchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-------NSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~a~~aL~~Ls 261 (401)
++..+...|+++++.++..|..+|-.++..-+ +.+...|+. ..++..|+++++. +..++...+..|..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG--EKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46777888899999999999988888843323 366677766 4899999999842 3357888877777665
No 245
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.22 E-value=15 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCceEc--CccccccHHhHHHHHH---cCCCCCCCCcc
Q 015728 9 IPHLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLA---AGNLTCPVTMQ 55 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~---~~~~~CP~c~~ 55 (401)
...+..|.+|.+. ..+.. .|...|...|+..-+. .+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456789999973 34444 4888899999976433 25688999965
No 246
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.19 E-value=25 Score=23.55 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=25.1
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHH----cCCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA----AGNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~----~~~~~CP~c~~~~~~ 59 (401)
...|.|++|...|...- -+..... ...+.|+.|++.+..
T Consensus 15 ~~~~~C~~C~k~f~~~~-----------~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKG-----------NLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHH-----------HHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHH-----------HHHHHHHHcCCCCCEECCCCCchhCC
Confidence 35689999998887642 2222222 134679999887754
No 247
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=40.65 E-value=34 Score=20.53 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcc
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQ 55 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~ 55 (401)
-...|.|++|...|...- -+...... ..+.|+.|++
T Consensus 9 ~~k~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVY-----------HLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEEESSHH-----------HHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCcCeeCCCCCcccCCHH-----------HHHHHHHhcCCCCCccCCCCCC
Confidence 345688998888777642 23333221 3577999864
No 248
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=40.15 E-value=16 Score=23.24 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=23.1
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
.|.|++|...|.... -+...... ..+.|+.|+..+..
T Consensus 2 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQE-----------HLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHH-----------HHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHH-----------HHHHHHHHhCCCCCccCCCCCCccCC
Confidence 367888888777542 23333322 34679999887653
No 249
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.84 E-value=33 Score=20.18 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=9.8
Q ss_pred CcccccccccccCC
Q 015728 11 HLFRCPISLDLFTD 24 (401)
Q Consensus 11 ~~~~C~iC~~~~~~ 24 (401)
..+.|++|...|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (45)
T 2epq_A 9 KPYSCPVCGLRFKR 22 (45)
T ss_dssp CSSEETTTTEECSC
T ss_pred CCCcCCCCCcccCC
Confidence 35778888777665
No 250
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.61 E-value=19 Score=25.69 Aligned_cols=30 Identities=13% Similarity=-0.019 Sum_probs=21.6
Q ss_pred cccccccccccCCc---eE-cCccccccHHhHHH
Q 015728 12 LFRCPISLDLFTDP---VT-LCTGQTYDRSSIEK 41 (401)
Q Consensus 12 ~~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~~ 41 (401)
...|.+|...|.-- .. ..||..||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45799999977532 22 47999999999643
No 251
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=39.32 E-value=1e+02 Score=24.24 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=49.1
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls 261 (401)
++..+...|.++++..+..|..+|-.++..-+ +.+...|+. ..++..|+.++ +.++.++...+..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG--~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCG--KIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC--HHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 46777788888899888888877777733222 255556655 47888888888 345567777777776655
No 252
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.94 E-value=20 Score=26.17 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCceEc--C--cc-ccccHHhHHHHHH-cCCCCCCCCcccC
Q 015728 9 IPHLFRCPISLDLFTDPVTL--C--TG-QTYDRSSIEKWLA-AGNLTCPVTMQTL 57 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~--~--Cg-h~fc~~Ci~~~~~-~~~~~CP~c~~~~ 57 (401)
..+...| +|.+.....++. . |. .-|...|+.---. .+.+.||.|....
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 3456778 999966554432 2 43 3466667641100 1468899997643
No 253
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.79 E-value=6.3 Score=28.70 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=35.3
Q ss_pred CCCCccccccccccc---CCceEc--CccccccHHhHHHHHH-cCCCCCCCCcccCCCCC
Q 015728 8 TIPHLFRCPISLDLF---TDPVTL--CTGQTYDRSSIEKWLA-AGNLTCPVTMQTLHDPS 61 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~---~~Pv~~--~Cgh~fc~~Ci~~~~~-~~~~~CP~c~~~~~~~~ 61 (401)
...++..|.+|...- .+.+.. .|...|-..|+..-.. .+...||.|........
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 345678999999753 123343 4888888889864322 25788999976554433
No 254
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.73 E-value=20 Score=27.70 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=35.0
Q ss_pred CcccccccccccC---CceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+-|+|..|...+. .+....=|.-||..|..+.+.. ...|..|++.+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 4589999999885 3445567788999998876641 1269999887754
No 255
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.39 E-value=11 Score=29.33 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=20.7
Q ss_pred ccccccccccCCc---eE-cCccccccHHhHH
Q 015728 13 FRCPISLDLFTDP---VT-LCTGQTYDRSSIE 40 (401)
Q Consensus 13 ~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~ 40 (401)
..|.+|...|.-- .. ..||+.||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4799999977532 22 4699999999964
No 256
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=38.34 E-value=27 Score=24.10 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=31.1
Q ss_pred cCCCCCCcccccccccccCCceEc--C--cc-ccccHHhHHHHHHc---CCCCCCCCcccC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTL--C--TG-QTYDRSSIEKWLAA---GNLTCPVTMQTL 57 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~--~--Cg-h~fc~~Ci~~~~~~---~~~~CP~c~~~~ 57 (401)
.+.+..+...| +|.+.....++. . |. .-|...|+. +.. +...||.|....
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33444567788 899965555543 2 54 457677775 222 568899997643
No 257
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=37.91 E-value=12 Score=38.10 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCCcccccccccccCCce--------E--cCcccc--------------------ccHHhHHHHHHc-------CCCCCC
Q 015728 9 IPHLFRCPISLDLFTDPV--------T--LCTGQT--------------------YDRSSIEKWLAA-------GNLTCP 51 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv--------~--~~Cgh~--------------------fc~~Ci~~~~~~-------~~~~CP 51 (401)
.|+.-.|+-|...+.||- + +.||.+ .|..|..+|-.. .+..||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 567788999988777654 2 346654 488999998664 357799
Q ss_pred CCcccC
Q 015728 52 VTMQTL 57 (401)
Q Consensus 52 ~c~~~~ 57 (401)
.|+-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999876
No 258
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.93 E-value=19 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=21.1
Q ss_pred cccccccccccCCc---eE-cCccccccHHhHH
Q 015728 12 LFRCPISLDLFTDP---VT-LCTGQTYDRSSIE 40 (401)
Q Consensus 12 ~~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~ 40 (401)
+-.|.+|...|.-- .. ..||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35899999877532 22 4699999999864
No 259
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.72 E-value=14 Score=26.35 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.2
Q ss_pred CCCCCccccccccc
Q 015728 7 MTIPHLFRCPISLD 20 (401)
Q Consensus 7 ~~~~~~~~C~iC~~ 20 (401)
.++|+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 35788899999976
No 260
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.57 E-value=11 Score=24.74 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=11.0
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5788899999976
No 261
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.15 E-value=7.2 Score=29.29 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=18.7
Q ss_pred cCCceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 22 FTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 22 ~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
+..|....||++|+. -+ ..+..||.|+..-
T Consensus 65 v~p~~C~~CG~~F~~-----~~-~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKA-----EI-NIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCCC-----CS-SCCSSCSSSCCCC
T ss_pred EECcChhhCcCeecc-----cC-CCCCCCcCCCCCc
Confidence 345555789998821 01 1456799998653
No 262
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.70 E-value=75 Score=27.86 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhh-----ccccchHHHHHHHHHHHHhCCHhh-HHHHHhCC
Q 015728 246 NSEASDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNA-----LTRERSLAAIAMARIEQLLAIENS-KDALINNP 318 (401)
Q Consensus 246 ~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~-----~~~~~~~~~~a~~~L~~La~~~~~-~~~~~~~~ 318 (401)
.+..+--+++++.|+..++. .+..+.+......+++.+.+. .+.+..++-.++.++.|++..... +. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hH
Confidence 34578889999999999988 777776654566666655210 012455666777778888853211 11 22
Q ss_pred CcHHHHHHHHHh----c----CChhHHHHHHHHHHHHhcCCH
Q 015728 319 NGVYALVKMVFR----V----SDHEGSENAINSLMMICCDSL 352 (401)
Q Consensus 319 g~i~~Lv~~l~~----~----~~~~~~~~a~~~L~~l~~~~~ 352 (401)
.....+++.+.. . .++++...++.+|.+|...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 345566664432 1 244566667777777775444
No 263
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.68 E-value=99 Score=26.50 Aligned_cols=70 Identities=7% Similarity=0.107 Sum_probs=51.7
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls 261 (401)
++..|...|.++++.++..|..+|-.++..-. +.+...|+. ..++..|+.+++ .+..++..++..|...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG--~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCG--QTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--hHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 57778888889999999999888888733322 245666765 478888998883 34568888888887765
No 264
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.93 E-value=11 Score=31.47 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=34.1
Q ss_pred CcccccccccccCC---ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTD---PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~---Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+-|+|..|...+.+ +....=|..||..|..+.+.. ...|+.|++.+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 45889999887764 455556788999998776541 1158888887754
No 265
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.90 E-value=47 Score=22.31 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=13.7
Q ss_pred ccccccccccCCc-eEcCccccccHHhHHHHHH
Q 015728 13 FRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLA 44 (401)
Q Consensus 13 ~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~ 44 (401)
|.|..|...+... ....=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4455555444321 2222344455555544443
No 266
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.81 E-value=1.5e+02 Score=23.59 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=51.3
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-------CchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-------NSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~a~~aL~~Ls 261 (401)
++..|...|.++++.++..|..+|-.++..-. +.+...|+. ..++..|++++++ +..++...+..|..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG--~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG--KRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC--HHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 57778888889999999999888888833332 255666766 4789999999842 3357888887777665
No 267
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=34.12 E-value=70 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=11.8
Q ss_pred CCcccccccccccCC
Q 015728 10 PHLFRCPISLDLFTD 24 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~ 24 (401)
...|.|++|...|..
T Consensus 15 ~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 15 KKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CcCeECCCCCCccCC
Confidence 456899999988864
No 268
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.99 E-value=1.3e+02 Score=24.56 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=51.8
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-------CchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-------NSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~a~~aL~~Ls 261 (401)
++..|.+.|.++++.++..|..+|-.++..-+ +.+...|+. ..++..|+.++.. +..++..++..|..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG--~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG--RRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46778888899999999999988888833322 366667766 4899999999842 2358888888877665
No 269
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=33.89 E-value=9.3 Score=26.66 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCcccccccccccCC-ceEc--CccccccHHhHHHHHHc---CCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTD-PVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~-Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~~~ 58 (401)
.+...|++|...-.. .+.. .|..-|...|+...... +...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345679999986543 3443 47777778887543221 4678999976554
No 270
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.37 E-value=10 Score=20.34 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=8.8
Q ss_pred ccccccccccCC
Q 015728 13 FRCPISLDLFTD 24 (401)
Q Consensus 13 ~~C~iC~~~~~~ 24 (401)
..||+|++.|..
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 478999887643
No 271
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.33 E-value=25 Score=23.24 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=24.3
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|.... -+...... ..+.|+.|++.+..
T Consensus 8 ~~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKA-----------ALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSHH-----------HHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCHH-----------HHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 4588999888777642 23333322 34779999887753
No 272
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=32.46 E-value=2.8e+02 Score=25.03 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=68.1
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhcc----CCcccchhhhHHHHHHHHHHHHH
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFG----KAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s----~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
|..++-....+...+..|.+.|....+.+|..-..|.+ .+.+..+..-|.. .... ...++..-++ ++.
T Consensus 73 L~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-----~~~l~KR~Ls-II~ 146 (315)
T 3qml_C 73 LANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-----SNILIKRYLS-ILN 146 (315)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-----CHHHHHHHHH-HHH
T ss_pred HHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-----hHHHHHHHHH-HHH
Confidence 33433234456778999999999999999988777766 3445444443322 1111 1235556666 777
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHG--SCSIKKRLCHLVEVI 215 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l 215 (401)
-|..+.... ...++..|+.++..+ +..+|..+..++..+
T Consensus 147 ~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 147 ELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 777554222 134678888888777 888999888888777
No 273
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.36 E-value=14 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5788899999976
No 274
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.35 E-value=13 Score=24.36 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=10.6
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4788889999976
No 275
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.29 E-value=5.1 Score=28.57 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=21.5
Q ss_pred cccccc--cccccC-----CceEc------CccccccHHhHHHH
Q 015728 12 LFRCPI--SLDLFT-----DPVTL------CTGQTYDRSSIEKW 42 (401)
Q Consensus 12 ~~~C~i--C~~~~~-----~Pv~~------~Cgh~fc~~Ci~~~ 42 (401)
..-||- |...+. .+++- .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 456886 877553 23343 58999999998765
No 276
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.04 E-value=45 Score=27.06 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=31.2
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+-|.|..|...+.......=|.-||..|..+.+. ..|..|+..+..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCC
Confidence 4588999988776543334577899999877654 346666665543
No 277
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.92 E-value=52 Score=22.78 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=26.7
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
..-.|+-|.+.+.+.....-+..|...| +.|..|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 3457888888776655555555555433 5688888877654
No 278
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.47 E-value=34 Score=28.25 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=25.2
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
-|+|..|...+.......=|.-||..|..+.+ ...|..|+..+..
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCS
T ss_pred cCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCC
Confidence 46666666655432222345567777765433 3457777776654
No 279
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.10 E-value=63 Score=18.81 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 11 KLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCBTTTTBCCSCH
T ss_pred CCeECCCCCCccCch
Confidence 347788877776653
No 280
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.89 E-value=33 Score=23.11 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
...|.|++|...|.... -+...... ..+.|+.|++.+..
T Consensus 16 ~~~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSS-----------DLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHH-----------HHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHH-----------HHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34688999988877542 23333221 34679999887653
No 281
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.29 E-value=63 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=9.5
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 12 PYKCSDCGKSFTWK 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CccCCccChhhCCH
Confidence 47788777766653
No 282
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=29.94 E-value=7.9 Score=22.24 Aligned_cols=27 Identities=15% Similarity=-0.065 Sum_probs=17.8
Q ss_pred cCccccccHHhHHHHHHc--CCCCCCCCc
Q 015728 28 LCTGQTYDRSSIEKWLAA--GNLTCPVTM 54 (401)
Q Consensus 28 ~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~ 54 (401)
.+|.|+.|..|--..+.. +..+-|.|+
T Consensus 10 ascehtmcgycqgplymtcigittdpecg 38 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLYMTCIGITTDPECG 38 (40)
T ss_dssp HHTCGGGGGGSCHHHHHHHHHHHTCTTTT
T ss_pred HhccccccccccCCeeEEEEeeccCCCCC
Confidence 479999999997776553 223345554
No 283
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.59 E-value=16 Score=25.32 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 4788899999986
No 284
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.58 E-value=23 Score=25.18 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=21.1
Q ss_pred cccccccccccCCc---eE-cCccccccHHhHH
Q 015728 12 LFRCPISLDLFTDP---VT-LCTGQTYDRSSIE 40 (401)
Q Consensus 12 ~~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~ 40 (401)
...|.+|...|.-- .. ..||..||..|..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 34799999877522 22 4699999999964
No 285
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=29.45 E-value=20 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhH
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSI 39 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci 39 (401)
.....+..+|+-|. .|..|. +.||..|.
T Consensus 5 ~~~~eD~WkC~~C~-k~N~Pl-----~ryC~rCw 32 (53)
T 2cr8_A 5 SSGSEDEWQCTECK-KFNSPS-----KRYCFRCW 32 (53)
T ss_dssp SSCCSCCEECSSSC-CEECSS-----CCBCTTTC
T ss_pred cCCCcceeeccccc-ccCCCc-----cchhHHHH
Confidence 34567889999999 467774 45666664
No 286
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.27 E-value=18 Score=27.98 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=26.9
Q ss_pred CcccccccccccCCc----eEcCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728 11 HLFRCPISLDLFTDP----VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQ 55 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P----v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~ 55 (401)
+...|..|...|.-- ....||..||..|...... ....|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 345799999877532 1257999999999765443 3455666644
No 287
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.07 E-value=1.5e+02 Score=25.06 Aligned_cols=70 Identities=4% Similarity=-0.037 Sum_probs=50.0
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls 261 (401)
++..|...|.++++.++..|..+|-.++..-. +.+...|+. ..++..|+.++. .+.+++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG--~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCG--APVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--HHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 46777788889999999999988888833222 256666766 478899999883 34457777777766654
No 288
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.82 E-value=23 Score=25.60 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=24.2
Q ss_pred CcccccccccccC-CceEcCccccccHHhHHHHHH-cCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFT-DPVTLCTGQTYDRSSIEKWLA-AGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~-~Pv~~~Cgh~fc~~Ci~~~~~-~~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|. ....+. .| +...-. ...+.|+.|++.|..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-~H------~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-KH------MEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-HH------HHHHHHHHHHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhhHHHHH-HH------HHHHcCCCCCEECCCCCCccCC
Confidence 4688999999887 543221 11 111111 235679999887653
No 289
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.65 E-value=32 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=21.2
Q ss_pred cccccccccccCC---ce-EcCccccccHHhHHH
Q 015728 12 LFRCPISLDLFTD---PV-TLCTGQTYDRSSIEK 41 (401)
Q Consensus 12 ~~~C~iC~~~~~~---Pv-~~~Cgh~fc~~Ci~~ 41 (401)
...|.+|...|.- .. -..||..||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3569999987642 22 256999999999643
No 290
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.62 E-value=18 Score=26.28 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=30.8
Q ss_pred CCcccccccccccCCceEc--CccccccHHhHHHHHHc---CCCCCCCCccc
Q 015728 10 PHLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQT 56 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~ 56 (401)
..+..|.+|..- ..+.. .|...|-..|+.+-+.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~--g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP--GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS--SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC--CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999974 23433 48778888888664433 56889999754
No 291
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=28.28 E-value=73 Score=18.57 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=9.6
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 12 PYECKECGKAFSQT 25 (46)
T ss_dssp SCBCSSSCCBCSCH
T ss_pred ceECCCCCchhCCH
Confidence 47788777776653
No 292
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.23 E-value=75 Score=18.56 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=10.4
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 347788887777654
No 293
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=28.02 E-value=56 Score=20.17 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=22.4
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 362 GVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 362 g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
+++..|+.-+++++++..+.....+|+.
T Consensus 1 ~aLqqLl~tlksp~sp~qqqqvl~ILks 28 (47)
T 1zoq_C 1 SALQDLLRTLKSPSSPQQQQQVLNILKS 28 (47)
T ss_dssp CHHHHHHHTCCSCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 3567788888888889999988888874
No 294
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.02 E-value=64 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 357788887777653
No 295
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.95 E-value=13 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=23.9
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
..+.|++|...|...-.+.- ...+.|+.|+..+...
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 45899999998876544322 2456677777766543
No 296
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.71 E-value=65 Score=18.78 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 11 KPFDCIDCGKAFSDH 25 (46)
T ss_dssp CSBCCTTTCCCBSSH
T ss_pred CCeECCCCCceeCCH
Confidence 357788887777654
No 297
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.41 E-value=34 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=11.7
Q ss_pred CCcccccccccccCCc
Q 015728 10 PHLFRCPISLDLFTDP 25 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~P 25 (401)
...|.|++|...|...
T Consensus 5 ~~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 5 SSGVACEICGKIFRDV 20 (95)
T ss_dssp CSCEECSSSCCEESSS
T ss_pred CCCeECCCCCCccCCh
Confidence 3468899998887653
No 298
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.37 E-value=71 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 347788877776653
No 299
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.35 E-value=40 Score=31.65 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=30.4
Q ss_pred cccccccccccCCceE----cCccccccHHhHHHHHHc---------CCCCCCCCccc
Q 015728 12 LFRCPISLDLFTDPVT----LCTGQTYDRSSIEKWLAA---------GNLTCPVTMQT 56 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~----~~Cgh~fc~~Ci~~~~~~---------~~~~CP~c~~~ 56 (401)
+..|.+|.+--. +. -.|...||..||.+.+.. ....|=.|...
T Consensus 93 ~~yCr~C~~Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 567888887432 22 258899999999988743 36788888654
No 300
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=27.26 E-value=3.6e+02 Score=24.91 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCch
Q 015728 111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKM 190 (401)
Q Consensus 111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i 190 (401)
.++.++..||-+..+.+.. +.+..++.-..+.. . +-.+--++. ++.|+-.+..-.+.++......
T Consensus 179 ~~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~-~------~~n~MltlR-~laNlF~~~~~g~~ll~~~~~~ 243 (362)
T 3l3f_X 179 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-N------ITLTMLTVR-ILVNCFNNENWGVKLLESNQVY 243 (362)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-S------HHHHHHHHH-HHHHHTTCTTTHHHHHTSHHHH
T ss_pred ccchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC-C------hhHHHHHHH-HHHHhccCcchHHHHHhcchhH
Confidence 3666777777777665532 23333333222211 1 346667777 7777755544234455321123
Q ss_pred HHHHHHhh--------cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc----------CCchhHHH
Q 015728 191 ESFIVLFE--------HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH----------HNSEASDA 252 (401)
Q Consensus 191 ~~Lv~~L~--------~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~----------~~~~~~~~ 252 (401)
..+++.+. ..+...+..++.++.|+ |...- ..+..+ ..+..++.++. .+.++.-.
T Consensus 244 ~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNl-Av~~~--~~~~~~----el~~~l~~~l~~~~g~~E~~~~d~EA~yR 316 (362)
T 3l3f_X 244 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY-SALVT--KGNSDL----ELLPIVADAINTKYGPLEEYQECEEAAYR 316 (362)
T ss_dssp TTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHH-HHHHH--HTCSCT----THHHHHHHHHHHTTTTSHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHH-HHHHh--cccchH----HHHHHHHHHHHhhccccccccCCHHHHHH
Confidence 34444331 12456788899999999 65420 111111 23344444442 36678899
Q ss_pred HHHHHHHhcCC
Q 015728 253 GVRAFSALCST 263 (401)
Q Consensus 253 a~~aL~~Ls~~ 263 (401)
++.||.+|...
T Consensus 317 lLVALGtL~~~ 327 (362)
T 3l3f_X 317 LTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998853
No 301
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=27.17 E-value=62 Score=18.93 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=9.7
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 11 KPFKCVECGKGFSRR 25 (46)
T ss_dssp CSBCCSSSCCCBSST
T ss_pred CCcccCccCcccCCH
Confidence 346777777766653
No 302
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=27.11 E-value=30 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.389 Sum_probs=23.3
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHH----cCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA----AGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~----~~~~~CP~c~~~~~~ 59 (401)
.|.|++|...|..+. -+..... ...+.|+.|+..+..
T Consensus 3 ~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSD-----------HLTTHIRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHH-----------HHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHH-----------HHHHHHHHcCCCCCccCCCCCCccCC
Confidence 478999888777642 2222221 245779999887754
No 303
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.09 E-value=45 Score=22.60 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCcccccccccccCCceEcCc-cccccHHhHHHHH
Q 015728 10 PHLFRCPISLDLFTDPVTLCT-GQTYDRSSIEKWL 43 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~C-gh~fc~~Ci~~~~ 43 (401)
++..-|-||.+... =....| |.-||.+|..+.-
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 34456999998633 112578 7899999987654
No 304
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.05 E-value=29 Score=25.09 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=21.3
Q ss_pred CcccccccccccCCc---eE-cCccccccHHhHH
Q 015728 11 HLFRCPISLDLFTDP---VT-LCTGQTYDRSSIE 40 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~ 40 (401)
+...|.+|...|.-- .. ..||..||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 345799999876532 22 4699999998864
No 305
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.02 E-value=74 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 347788877777653
No 306
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.00 E-value=73 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=8.7
Q ss_pred cccccccccccCC
Q 015728 12 LFRCPISLDLFTD 24 (401)
Q Consensus 12 ~~~C~iC~~~~~~ 24 (401)
.|.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 12 PFKCDICGKSFCG 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCcCCchhCC
Confidence 4677777776665
No 307
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.90 E-value=60 Score=18.97 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eml_A 11 KPYECSVCGKAFSHR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCcCCccCCH
Confidence 347788887766653
No 308
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.86 E-value=68 Score=18.75 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=10.4
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 11 KPYQCSECGKSFSGS 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred CCeeCCCCCcccCCH
Confidence 347788887777654
No 309
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.83 E-value=63 Score=18.79 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.5
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2eoe_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSSEETTTTEECSSH
T ss_pred CCeECCCcChhhCCH
Confidence 357888888777653
No 310
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=26.65 E-value=1.1e+02 Score=21.34 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=11.0
Q ss_pred CCcccccc--cccccCC
Q 015728 10 PHLFRCPI--SLDLFTD 24 (401)
Q Consensus 10 ~~~~~C~i--C~~~~~~ 24 (401)
...+.|++ |...|..
T Consensus 13 ~~~~~C~~~~C~~~f~~ 29 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTK 29 (100)
T ss_dssp CCCEECCSSSCCCEESC
T ss_pred CcceEcCCCCCCCcccC
Confidence 45688987 9887753
No 311
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.42 E-value=70 Score=18.58 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=9.9
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 346787777766653
No 312
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.41 E-value=33 Score=24.79 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=10.8
Q ss_pred CCCCCCCCcccCCC
Q 015728 46 GNLTCPVTMQTLHD 59 (401)
Q Consensus 46 ~~~~CP~c~~~~~~ 59 (401)
..+.|+.|++.+..
T Consensus 61 k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 61 EMFTCHHCGKQLRS 74 (96)
T ss_dssp CCCCCSSSCCCCSS
T ss_pred CCeECCCCCCeeCC
Confidence 56889999887754
No 313
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=26.41 E-value=3.5e+02 Score=25.66 Aligned_cols=106 Identities=5% Similarity=-0.090 Sum_probs=61.5
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
..+..+.-+++.+.|+-....-.+..+........+++.+.+......+..+.-++-.+++ ++.|++......+. +
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~AT-LllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVST-LIFNYSALVTKGNS---D 349 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHH-HHHHHHHHHHHSCS---C
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHHHHHHHhcccc---h
Confidence 4677888888999998877654455553333355666666433211011123445555556 77788753322111 1
Q ss_pred CCchHHHHHHhh---------cCCHHHHHHHHHHHHHHH
Q 015728 187 ESKMESFIVLFE---------HGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 187 ~g~i~~Lv~~L~---------~~~~~~~~~aa~~L~~l~ 216 (401)
...+..++.++. ..+.+...++..+|++|+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 233456666665 247788888888998883
No 314
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.38 E-value=65 Score=18.78 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep2_A 11 KPYECSICGKSFTKK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCCH
Confidence 357788877766653
No 315
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=26.04 E-value=17 Score=30.35 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=30.1
Q ss_pred CcccccccccccCCceEc--CccccccHHhHHHHHHc---CCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~~~ 58 (401)
.+-.|.+|.+- .-+.. .|...|...|+...+.. +...||.|+....
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC--CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34569999864 22333 38878888887554332 5688999986543
No 316
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=26.03 E-value=55 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=7.6
Q ss_pred CCCCCCCCcccCC
Q 015728 46 GNLTCPVTMQTLH 58 (401)
Q Consensus 46 ~~~~CP~c~~~~~ 58 (401)
.++.|+.|++.+.
T Consensus 99 ~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 99 HTKVCPVCKKEFT 111 (129)
T ss_dssp CCCBCTTTCCBCS
T ss_pred CCCCCCCCCcccC
Confidence 4456666665554
No 317
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.00 E-value=3.2e+02 Score=23.64 Aligned_cols=107 Identities=5% Similarity=-0.089 Sum_probs=63.1
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
+++..+.-+++.+.|+-.+..-.|+.+........++..+.+.........+.-++-.+++ ++.|++......+. +
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~AT-l~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVST-LIFNYSALVTKGNS---D 177 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHH-HHHHHHHHHHTSCS---C
T ss_pred CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHH-HHHHHHHHHhhccc---h
Confidence 4677899999999999988764566665443455556655332211001123446656666 78888753222111 1
Q ss_pred CCchHHHHHHhhc---------CCHHHHHHHHHHHHHHHh
Q 015728 187 ESKMESFIVLFEH---------GSCSIKKRLCHLVEVIIS 217 (401)
Q Consensus 187 ~g~i~~Lv~~L~~---------~~~~~~~~aa~~L~~l~s 217 (401)
......+++.+.. .+.+...++..+|++|+.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2334556665542 366788888889999843
No 318
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=25.76 E-value=32 Score=22.26 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=23.6
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHH------cCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA------AGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~------~~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|..+- -+..... ...+.|+.|++.+..
T Consensus 9 k~~~C~~C~k~f~~~~-----------~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 9 HTYRCKVCSRVYTHIS-----------NFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp TEEECTTTCCEESSHH-----------HHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred cceECCCCcchhCCHH-----------HHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 3578998888777642 2222221 134679999887754
No 319
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.55 E-value=26 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.2
Q ss_pred ccccccccccCCc---eE-cCccccccHHhHH
Q 015728 13 FRCPISLDLFTDP---VT-LCTGQTYDRSSIE 40 (401)
Q Consensus 13 ~~C~iC~~~~~~P---v~-~~Cgh~fc~~Ci~ 40 (401)
..|.+|...|.-- .. ..||..||..|..
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 5799999877422 22 4699999999853
No 320
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.43 E-value=52 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=18.1
Q ss_pred cccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 14 RCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.|.-|.+.+.+.+...-+..|...| +.|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC---------FRCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT---------SBCSSSCCBCSS
T ss_pred cCccCCCEecceEEEECcccccccC---------CEeCCCCCcCCC
Confidence 4555665555444434444444443 235555555544
No 321
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.13 E-value=21 Score=25.80 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=10.0
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 5677888888875
No 322
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.88 E-value=80 Score=18.38 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=10.3
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 357788887777653
No 323
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.84 E-value=41 Score=22.61 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHH---c---CCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA---A---GNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~---~---~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|...- -+..... . ..+.|+.|++.+..
T Consensus 14 k~~~C~~C~k~f~~~~-----------~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 14 KPYECYICHARFTQSG-----------TMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CSEECTTTCCEESCHH-----------HHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCeECCCcCchhCCHH-----------HHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 4588999988777642 2333322 1 24679999887653
No 324
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=71 Score=18.65 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 11 KPYKCVECGKGYKRR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECcccCchhCCH
Confidence 357788887776653
No 325
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.67 E-value=61 Score=18.95 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=10.3
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 11 KSHQCHECGRGFTLK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCcCCCccCCH
Confidence 357788887777653
No 326
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.57 E-value=77 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=11.4
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..+.|++|...|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457899998888653
No 327
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.48 E-value=75 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=20.4
Q ss_pred CCcccccccccccC-CceEcCccccccHH
Q 015728 10 PHLFRCPISLDLFT-DPVTLCTGQTYDRS 37 (401)
Q Consensus 10 ~~~~~C~iC~~~~~-~Pv~~~Cgh~fc~~ 37 (401)
....+|..|..-.. .+..-.||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEeecCCEeccc
Confidence 34578999998433 35655799999975
No 328
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.45 E-value=25 Score=28.33 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHH-HHHHHhhcC-CC-HHHHHHHHHHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLT-QLLLLLQSQ-CS-NRTKTKARMLLKLLRS 392 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~-~L~~ll~~~-~~-~~~~~~A~~~L~~l~~ 392 (401)
++..|.+.|....++..+..|+.+|-.+..+.+ ....++.....+. .|+.++... .. ..+|++...+++..+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 344566654323355566778888888776654 3444554444454 366666432 12 3678777666655443
No 329
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=24.44 E-value=73 Score=18.54 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=9.8
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 11 KTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 346777777766653
No 330
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=24.37 E-value=48 Score=25.89 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=35.0
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHH----------HcCCCCCCCCcccCCCCCCCCcHHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWL----------AAGNLTCPVTMQTLHDPSIVPNHTLRHLINQW 75 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~----------~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~ 75 (401)
+..|.+|.+--.=..--.|-..||..|+.+-+ ..+...|+.|.. .+...++....+.
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~-------~pl~~L~~~C~~v 123 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP-------EPLLDLVTACNSV 123 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC-------GGGHHHHHHHHHH
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC-------HHHHHHHHHHHHH
Confidence 45599998632210112588999999998752 135688999933 3445555555443
No 331
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.34 E-value=20 Score=26.19 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=31.8
Q ss_pred CcccccccccccCCc-eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+=|+|..|...+... ....=|..||..|..+. ....|..|++.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 348899998877643 23446778898886532 34569999888763
No 332
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.26 E-value=68 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 11 RPHKCNECGKSFIQS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCCChhhCCH
Confidence 347788877766653
No 333
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.24 E-value=1.7e+02 Score=24.56 Aligned_cols=144 Identities=8% Similarity=0.096 Sum_probs=78.0
Q ss_pred HHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-------CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHH
Q 015728 211 LVEVIISSSHETKELCCKLGKDDRLLREIISLVH-------HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYI 283 (401)
Q Consensus 211 ~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-------~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL 283 (401)
+|..| +.++ . - ...+|-++..+. .+.............|..++.-.-.--=+-.+|+++..+
T Consensus 28 aL~sL-~~D~---g------L-~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 28 AIECL-EKES---G------L-QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp HHHHH-HHCS---S------C-TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHH-hcCC---C------h-hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 56666 6654 1 1 245676666551 244566677777777777766322211233788888888
Q ss_pred HhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015728 284 SNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAG 362 (401)
Q Consensus 284 ~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 362 (401)
-...-+...+++.|+..|..++..-...-.-. .+-.+..+.+.+++.. +....--|+..|..+ +. ++++.-
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l---G~----~~vr~~ 168 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDSQYGALYCLSIL---SK----NVVNTV 168 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CH----HHHHTH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh---HH----HHHHHh
Confidence 53211222799999999999996321110000 1123445666444433 333344466666655 22 344555
Q ss_pred cHHHHHHHhhc
Q 015728 363 VLTQLLLLLQS 373 (401)
Q Consensus 363 ~v~~L~~ll~~ 373 (401)
.+|.|-.+.+.
T Consensus 169 llP~l~~~~~~ 179 (196)
T 4atg_A 169 IREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred hhcCHHHHHHH
Confidence 56666555533
No 334
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.16 E-value=16 Score=34.81 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=0.0
Q ss_pred cccccccccccCCc----eEcCccccccHHhHHHHH
Q 015728 12 LFRCPISLDLFTDP----VTLCTGQTYDRSSIEKWL 43 (401)
Q Consensus 12 ~~~C~iC~~~~~~P----v~~~Cgh~fc~~Ci~~~~ 43 (401)
...|..|...|.-- ....||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 45799999877522 224699999999986543
No 335
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.04 E-value=69 Score=18.65 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=9.8
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 11 KPYKCSECGKAFHRH 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCCeeCCh
Confidence 347788777766653
No 336
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.02 E-value=54 Score=22.35 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=29.8
Q ss_pred CcccccccccccCC-ceEcCccccccH-HhHHHHHHcCCCCCCCCcccC
Q 015728 11 HLFRCPISLDLFTD-PVTLCTGQTYDR-SSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 11 ~~~~C~iC~~~~~~-Pv~~~Cgh~fc~-~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
+-|.|..|...+.. +....=|..||. .|..+.+. ..|..|+...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 45889999887765 444456778898 58766543 4577776543
No 337
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.90 E-value=75 Score=18.47 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 11 KPYMCNECGKAFSVY 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCeECCCCCchhCCH
Confidence 347788887766653
No 338
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.70 E-value=71 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=9.8
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytk_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCEeCCcCCCccCCH
Confidence 347787777766653
No 339
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.67 E-value=71 Score=18.60 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 11 NPYECHECGKAFSRK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCcH
Confidence 347788877766653
No 340
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=23.66 E-value=16 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=28.6
Q ss_pred CcccccccccccCCceEc--CccccccHHhHHHHHHc---CCCCCCCCccc
Q 015728 11 HLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQT 56 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~ 56 (401)
.+..|.+|.+- ..+.. .|...|...|+..-+.. +...||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45679999862 23333 47778888888643332 56789999653
No 341
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.57 E-value=23 Score=27.95 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=17.3
Q ss_pred CcccccccccccC--Cc-eE--cCccccccHHh
Q 015728 11 HLFRCPISLDLFT--DP-VT--LCTGQTYDRSS 38 (401)
Q Consensus 11 ~~~~C~iC~~~~~--~P-v~--~~Cgh~fc~~C 38 (401)
.+-.|.+|...|. .. -. ..|.|.+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 4568999999772 11 11 34666666655
No 342
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.54 E-value=69 Score=18.66 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=9.6
Q ss_pred CcccccccccccCC
Q 015728 11 HLFRCPISLDLFTD 24 (401)
Q Consensus 11 ~~~~C~iC~~~~~~ 24 (401)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ene_A 11 KPYKCNECGKVFRH 24 (46)
T ss_dssp SSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 35778887776665
No 343
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.47 E-value=75 Score=18.42 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eme_A 11 KPYVCDYCGKAFGLS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCChhhCCH
Confidence 357788877766653
No 344
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.37 E-value=77 Score=18.38 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=9.4
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 12 PCKCTECGKAFCWK 25 (46)
T ss_dssp SEECSSSCCEESSS
T ss_pred CeeCCCCCCccCCH
Confidence 47777777766654
No 345
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=23.17 E-value=66 Score=18.71 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=9.9
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2el4_A 11 KPYGCSQCAKTFSLK 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CceECCCCCchhCCH
Confidence 347788877766653
No 346
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=23.17 E-value=69 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=9.3
Q ss_pred CcccccccccccCC
Q 015728 11 HLFRCPISLDLFTD 24 (401)
Q Consensus 11 ~~~~C~iC~~~~~~ 24 (401)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ema_A 11 KRYKCNECGKVFSR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred cCcCCCCCcchhCC
Confidence 34778777776654
No 347
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.14 E-value=72 Score=18.55 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 11 RPYICTVCGKAFTDR 25 (46)
T ss_dssp CSEECTTTCCEESSH
T ss_pred CCcCCCCCCchhCCH
Confidence 347788777766654
No 348
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.04 E-value=33 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=24.3
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHH---cCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA---AGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~---~~~~~CP~c~~~~~~ 59 (401)
..|.|++|...|...-.+. .-+..... ...+.|+.|++.+..
T Consensus 6 k~~~C~~C~k~f~~~~~L~-------~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLN-------WHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCEECSSSCCEESSHHHHH-------HHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred cCeECCCCCCeeCCHHHHH-------HHHHHhhccCCCcccCCCCCCchhCC
Confidence 4588999988877642211 01111111 246789999887753
No 349
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=22.95 E-value=80 Score=18.38 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2el6_A 11 NPYKCSQCEKSFSGK 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCeECCCCCcccCCH
Confidence 347788887766653
No 350
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=64 Score=18.82 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=10.4
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSK 25 (46)
T ss_dssp CSEEETTTTEEESCH
T ss_pred CCeECCCCCCccCCH
Confidence 357888887777653
No 351
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.77 E-value=51 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=10.9
Q ss_pred CcccccccccccCC
Q 015728 11 HLFRCPISLDLFTD 24 (401)
Q Consensus 11 ~~~~C~iC~~~~~~ 24 (401)
..|.|++|...|..
T Consensus 7 ~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 7 GPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCBTTTTBCCCC
T ss_pred cCeECCCCCCccCC
Confidence 45889999988864
No 352
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.48 E-value=52 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=22.8
Q ss_pred Cccccccccccc-CCceE--cCccccccHHhHHH
Q 015728 11 HLFRCPISLDLF-TDPVT--LCTGQTYDRSSIEK 41 (401)
Q Consensus 11 ~~~~C~iC~~~~-~~Pv~--~~Cgh~fc~~Ci~~ 41 (401)
.+..|.+|...- ...+. +.|..+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 367899998643 33333 57999999999985
No 353
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.47 E-value=28 Score=21.95 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=26.4
Q ss_pred cccccccccC-CceEc--CccccccHHhHHHHHHc---CCCCCCCCcc
Q 015728 14 RCPISLDLFT-DPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQ 55 (401)
Q Consensus 14 ~C~iC~~~~~-~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~ 55 (401)
.|.+|...-. +.+.. .|...|...|+..-+.+ +...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4778876432 23333 48888888998643332 4677999864
No 354
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.38 E-value=64 Score=18.82 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.4
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSEECSSSCCEESSS
T ss_pred CCeECCcCCchhCCH
Confidence 357788887777654
No 355
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.36 E-value=8 Score=25.88 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=20.6
Q ss_pred ccccccccccCC-----ceEcC---ccccccHHhHHHHHH
Q 015728 13 FRCPISLDLFTD-----PVTLC---TGQTYDRSSIEKWLA 44 (401)
Q Consensus 13 ~~C~iC~~~~~~-----Pv~~~---Cgh~fc~~Ci~~~~~ 44 (401)
-.||-|...... -++-. |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 468888776654 22322 788888888766644
No 356
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.86 E-value=48 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.0
Q ss_pred cccccccccccCCce-EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDPV-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
...|.-|.+.+.+.. ...-+..|...| +.|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 458999999777663 445666666655 45888888775
No 357
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.81 E-value=76 Score=18.46 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=9.5
Q ss_pred CcccccccccccCC
Q 015728 11 HLFRCPISLDLFTD 24 (401)
Q Consensus 11 ~~~~C~iC~~~~~~ 24 (401)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 11 KPYKCHECGKVFRR 24 (46)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 34778877776665
No 358
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.70 E-value=83 Score=18.30 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 11 RPYGCNECGKNFGRH 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCEEccccCcccCCH
Confidence 347788777766654
No 359
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.58 E-value=85 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2enc_A 11 KPFKCEECGKGFYTN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcCCCCCCCcCCCh
Confidence 357788877766653
No 360
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.48 E-value=74 Score=18.51 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em7_A 11 KPYKCEECGKGFICR 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCccCCCccchhCCH
Confidence 357788887776653
No 361
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.42 E-value=1e+02 Score=17.89 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.5
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 12 PYECIECGKAFIQN 25 (47)
T ss_dssp SBCCSSSCCCBSSH
T ss_pred CEECCccCchhCCh
Confidence 47777777766653
No 362
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.39 E-value=3.5 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=21.9
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHH--cCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA--AGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~--~~~~~CP~c~~~~~~~ 60 (401)
..|.|+.|...|...-.+ .... ...+.|+.|++.+...
T Consensus 13 k~~~C~~C~k~F~~~~~l------------~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEAN------------QLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHHH------------HHEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHHh------------HhhcCCCCCEECCCCCCccccC
Confidence 357788877766532111 1111 1357799999887543
No 363
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.15 E-value=83 Score=18.25 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYG 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCcccCcccCCh
Confidence 357788887776653
No 364
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.08 E-value=88 Score=18.13 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=9.6
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytj_A 11 KPYICAECGKAFTIR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCChhhCCH
Confidence 347777777766553
No 365
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.03 E-value=60 Score=23.03 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=26.6
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
-.|+.|.+.+.+.+...-+..|...| +.|..|+..+...
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAYI 64 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSSS
T ss_pred CCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCCC
Confidence 46888888777666655666665544 5688888877643
No 366
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.99 E-value=79 Score=20.92 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=17.4
Q ss_pred cccccccccccCCc-eEcCccccccHHhHHHHHH
Q 015728 12 LFRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLA 44 (401)
Q Consensus 12 ~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~ 44 (401)
-|.|..|...+... ....=+..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 35666666655432 2233455666666655543
No 367
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=20.90 E-value=58 Score=21.42 Aligned_cols=38 Identities=13% Similarity=0.458 Sum_probs=22.2
Q ss_pred Ccccccc--cccccCCceEcCccccccHHhHHHHHH----cCCCCCCCCcccCCC
Q 015728 11 HLFRCPI--SLDLFTDPVTLCTGQTYDRSSIEKWLA----AGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~i--C~~~~~~Pv~~~Cgh~fc~~Ci~~~~~----~~~~~CP~c~~~~~~ 59 (401)
..+.|++ |...|...- -+..... ...+.|+.|++.+..
T Consensus 18 ~~~~C~~~~C~k~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 61 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSD-----------ELTRHIRIHTGQKPFQCRICMRNFSR 61 (73)
T ss_dssp CCEECSSTTBCCEESSHH-----------HHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred CccCCcCCCCCCccCCHH-----------HHHHHHHhhCCCCCeECCCCCchhCC
Confidence 3578874 777665432 2222222 245779999887754
No 368
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.84 E-value=3.9e+02 Score=24.65 Aligned_cols=106 Identities=5% Similarity=-0.090 Sum_probs=61.4
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
..+..+.-+++.+.|+-.+..-.+..+........+++.+.+......+..+.-++-.+++ ++.|++......+. +
T Consensus 211 ~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~AT-L~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 211 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVST-LIFNYSALVTKGNS---D 286 (362)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHH-HHHHHHHHHHHTCS---C
T ss_pred CChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHHHHHHHhcccc---h
Confidence 4677888999999999877654455553322244555555332211011123445555566 77788753322111 1
Q ss_pred CCchHHHHHHhh---------cCCHHHHHHHHHHHHHHH
Q 015728 187 ESKMESFIVLFE---------HGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 187 ~g~i~~Lv~~L~---------~~~~~~~~~aa~~L~~l~ 216 (401)
...+..++.++. ..+.+...++..+|++|+
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~ 325 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 325 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 234456666665 247788889999999994
No 369
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.63 E-value=49 Score=22.49 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=11.5
Q ss_pred cccccccccCCceEcCccccccHHh
Q 015728 14 RCPISLDLFTDPVTLCTGQTYDRSS 38 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh~fc~~C 38 (401)
.|+-|...+...+...-+..|...|
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc
Confidence 4555555444443334444444433
No 370
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=20.58 E-value=79 Score=18.32 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=10.1
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em9_A 11 KPYNCKECGKSFRWA 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCccccccCCh
Confidence 357788877766653
No 371
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.48 E-value=50 Score=22.19 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=8.3
Q ss_pred ccccccccccCC
Q 015728 13 FRCPISLDLFTD 24 (401)
Q Consensus 13 ~~C~iC~~~~~~ 24 (401)
|.|++|...|..
T Consensus 2 ~~C~~C~~~f~~ 13 (82)
T 2kmk_A 2 FDCKICGKSFKR 13 (82)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCCcccccC
Confidence 567777776654
No 372
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.38 E-value=40 Score=27.20 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.1
Q ss_pred CcccccccccccC---CceE--cCccccccHHhH
Q 015728 11 HLFRCPISLDLFT---DPVT--LCTGQTYDRSSI 39 (401)
Q Consensus 11 ~~~~C~iC~~~~~---~Pv~--~~Cgh~fc~~Ci 39 (401)
++-.|.+|...|. ++-. ..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999653 2222 358888888885
No 373
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30 E-value=82 Score=18.29 Aligned_cols=15 Identities=13% Similarity=0.312 Sum_probs=10.2
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en6_A 11 KPYGCNECGKTFSQK 25 (46)
T ss_dssp CCEEETTTTEEESSH
T ss_pred cCeECCCCCcccCch
Confidence 347788887776654
No 374
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.25 E-value=14 Score=31.55 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=30.1
Q ss_pred cccccccccccCCceEc--CccccccHHhHHHHHHc---CCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAA---GNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~---~~~~CP~c~~~~~ 58 (401)
+-.|.+|..-- .+.. .|...|...|+...+.. +...||.|.....
T Consensus 7 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 7 EDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45699998632 2333 38888888888654332 5688999986543
No 375
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.22 E-value=71 Score=22.95 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.4
Q ss_pred CCCcccccc--cccccCCceEcC-ccccccHH
Q 015728 9 IPHLFRCPI--SLDLFTDPVTLC-TGQTYDRS 37 (401)
Q Consensus 9 ~~~~~~C~i--C~~~~~~Pv~~~-Cgh~fc~~ 37 (401)
......|+. |...-.-|+.-. |+.+||..
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 345678998 998766788765 99999974
No 376
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.18 E-value=98 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.3
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 10 PFGCSCCEKAFSSK 23 (44)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCCCcccCCH
Confidence 47777777766653
No 377
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=82 Score=18.34 Aligned_cols=14 Identities=29% Similarity=0.429 Sum_probs=9.5
Q ss_pred cccccccccccCCc
Q 015728 12 LFRCPISLDLFTDP 25 (401)
Q Consensus 12 ~~~C~iC~~~~~~P 25 (401)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emf_A 12 HFECTECGKAFTRK 25 (46)
T ss_dssp CEECSSSCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 47788777766653
No 378
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.09 E-value=25 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCccccccccccc---CCceEc--CccccccHHhHHHHHH-cCCCCCCCCcc
Q 015728 9 IPHLFRCPISLDLF---TDPVTL--CTGQTYDRSSIEKWLA-AGNLTCPVTMQ 55 (401)
Q Consensus 9 ~~~~~~C~iC~~~~---~~Pv~~--~Cgh~fc~~Ci~~~~~-~~~~~CP~c~~ 55 (401)
..++..|.+|.+.- .+.+.. .|...|-..|+..-.. .+...||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45677899998752 334554 4888888888864211 25677888754
No 379
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.01 E-value=86 Score=18.13 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=10.0
Q ss_pred CcccccccccccCCc
Q 015728 11 HLFRCPISLDLFTDP 25 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P 25 (401)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en8_A 11 KSHTCDECGKNFCYI 25 (46)
T ss_dssp SSEECTTTCCEESSH
T ss_pred CCeECCCcCcccCCH
Confidence 347788877766653
Done!