BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015730
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S29|A Chain A, La Autoantigen N-Terminal Domain
Length = 92
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 190 HGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS 249
H L+ E+ QK+ QVE+YFSD+N+ L ++ EG+V + T+ +FK++ ++ +
Sbjct: 3 HXPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKXAENAEGFVSLETLLTFKRVNSVTTD 62
Query: 250 HSHLAXXXXXXXXXXXXEDGKKIKRQNPL 278
+ EDG ++R++PL
Sbjct: 63 VKEVVEAIRPSEKLVLSEDGLXVRRRDPL 91
>pdb|2VOD|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auauuuu
pdb|2VOD|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auauuuu
pdb|2VON|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auaauuu
pdb|2VON|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auaauuu
pdb|2VOO|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Uuuuuuuu
pdb|2VOO|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Uuuuuuuu
pdb|2VOP|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auuuu
Length = 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 15 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 73
Query: 258 XXXXXXXXXEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 74 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 133
Query: 313 GSVKTIR 319
G V I+
Sbjct: 134 GQVLNIQ 140
>pdb|1YTY|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
pdb|1YTY|B Chain B, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
Length = 194
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELXEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>pdb|1ZH5|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
pdb|1ZH5|B Chain B, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
Length = 195
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ F ++ + + + + A
Sbjct: 17 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEALSK 75
Query: 258 XXXXXXXXXEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 76 SKAELXEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 135
Query: 313 GSVKTIR 319
G V I+
Sbjct: 136 GQVLNIQ 142
>pdb|1S7A|A Chain A, Nmr Structure Of The La Motif Of Human La Protein
Length = 103
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKR--QNPLTE 280
ED KI+R PL E
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPE 99
>pdb|2CQK|A Chain A, Solution Structure Of The La Domain Of C-Mpl Binding
Protein
Length = 101
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 204 QVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXX 263
Q+E+ FS NL+ +LI + D + ++PI TVA+ ++IK + + +
Sbjct: 21 QLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMV 78
Query: 264 XXXEDGKKIK 273
E G+K++
Sbjct: 79 QVDEKGEKVR 88
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDP 228
V N V+YY N+ TT+ +RF+++ P
Sbjct: 335 VANNVKYYIEVANMPTTNEALRFLMQQP 362
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDP 228
V N V+YY N+ TT+ +RF+++ P
Sbjct: 335 VANNVKYYIEVANMPTTNEALRFLMQQP 362
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDP 228
V N V+YY N+ TT+ +RF+++ P
Sbjct: 335 VANNVKYYIEVANMPTTNEALRFLMQQP 362
>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 280 ESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCL 322
E +L++ R+V+++ P C++N+M +F+ + +++ C
Sbjct: 521 ECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCF 563
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,434,037
Number of Sequences: 62578
Number of extensions: 180496
Number of successful extensions: 572
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 12
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)