Query 015730
Match_columns 401
No_of_seqs 241 out of 1992
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.8E-43 3.8E-48 352.2 17.7 222 149-374 84-313 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 4E-26 8.6E-31 184.5 5.8 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 5.1E-26 1.1E-30 182.0 4.5 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 2.9E-25 6.3E-30 176.1 4.9 74 199-274 2-75 (75)
5 cd08029 LA_like_fungal La-moti 99.9 4.8E-25 1E-29 176.1 4.5 75 199-274 2-76 (76)
6 cd08036 LARP_5 La RNA-binding 99.9 6.2E-25 1.3E-29 173.3 5.0 73 199-273 2-74 (75)
7 smart00715 LA Domain in the RN 99.9 8.4E-25 1.8E-29 176.5 4.8 79 196-275 2-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 1E-24 2.3E-29 176.4 5.2 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 1.6E-24 3.5E-29 177.8 4.8 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 3.9E-24 8.4E-29 170.4 4.3 74 199-274 2-75 (75)
11 KOG2591 c-Mpl binding protein, 99.9 1.9E-23 4.1E-28 214.2 9.7 161 189-385 88-250 (684)
12 cd08037 LARP_1 La RNA-binding 99.9 2.7E-23 5.9E-28 164.3 4.4 72 199-274 2-73 (73)
13 cd08038 LARP_2 La RNA-binding 99.9 4E-23 8.7E-28 163.3 4.8 72 199-274 2-73 (73)
14 cd07323 LAM LA motif RNA-bindi 99.9 7.1E-23 1.5E-27 163.5 4.8 74 199-274 2-75 (75)
15 cd08034 LARP_1_2 La RNA-bindin 99.9 8.2E-23 1.8E-27 161.9 4.8 72 199-274 2-73 (73)
16 KOG4213 RNA-binding protein La 99.8 1.8E-20 3.9E-25 169.6 8.9 155 194-368 10-171 (205)
17 PF05383 La: La domain; Inter 99.8 1.8E-20 4E-25 143.9 1.9 60 201-260 1-61 (61)
18 TIGR01659 sex-lethal sex-letha 99.5 3.2E-13 7E-18 136.3 11.5 84 287-387 192-275 (346)
19 COG5193 LHP1 La protein, small 99.4 9.8E-14 2.1E-18 139.1 4.3 163 186-365 45-244 (438)
20 PLN03134 glycine-rich RNA-bind 99.4 1.8E-12 4E-17 115.6 9.4 78 288-384 34-111 (144)
21 PF00076 RRM_1: RNA recognitio 99.3 2.8E-12 6.1E-17 97.5 6.9 66 291-374 1-66 (70)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 4.1E-12 8.8E-17 126.5 8.3 81 289-388 270-350 (352)
23 TIGR01645 half-pint poly-U bin 99.2 3.7E-11 8E-16 128.7 11.8 70 288-374 204-273 (612)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 1.7E-11 3.7E-16 122.1 8.5 70 288-374 3-72 (352)
25 TIGR01659 sex-lethal sex-letha 99.2 1.8E-11 4E-16 123.7 8.3 71 287-374 106-176 (346)
26 TIGR01628 PABP-1234 polyadenyl 99.2 4.6E-11 1E-15 127.0 11.4 89 287-396 284-372 (562)
27 KOG0122 Translation initiation 99.2 5.7E-11 1.2E-15 112.9 7.3 72 287-375 188-259 (270)
28 PF14259 RRM_6: RNA recognitio 99.1 1E-10 2.3E-15 90.0 7.0 64 291-372 1-64 (70)
29 KOG0121 Nuclear cap-binding pr 99.1 9.5E-11 2.1E-15 102.0 7.0 74 285-375 33-106 (153)
30 KOG0117 Heterogeneous nuclear 99.1 2.3E-10 4.9E-15 116.4 10.6 151 218-393 179-340 (506)
31 KOG0114 Predicted RNA-binding 99.1 3.4E-10 7.3E-15 95.3 9.2 67 288-374 18-84 (124)
32 PLN03120 nucleic acid binding 99.1 2E-10 4.3E-15 111.3 8.4 66 288-374 4-69 (260)
33 KOG0107 Alternative splicing f 99.1 1.1E-10 2.4E-15 106.2 6.2 76 288-387 10-85 (195)
34 KOG0117 Heterogeneous nuclear 99.1 5.2E-10 1.1E-14 113.8 11.6 72 286-374 81-152 (506)
35 KOG0144 RNA-binding protein CU 99.1 8.1E-11 1.8E-15 119.2 5.6 80 287-384 123-203 (510)
36 KOG0144 RNA-binding protein CU 99.1 2.3E-10 5.1E-15 115.9 8.7 81 277-374 23-103 (510)
37 TIGR01648 hnRNP-R-Q heterogene 99.1 4.1E-10 8.9E-15 120.4 9.9 69 287-373 57-125 (578)
38 KOG0145 RNA-binding protein EL 99.1 2.3E-10 5E-15 109.8 6.7 115 250-385 93-207 (360)
39 TIGR01642 U2AF_lg U2 snRNP aux 99.1 8.3E-10 1.8E-14 115.5 11.2 71 288-375 295-365 (509)
40 TIGR01628 PABP-1234 polyadenyl 99.0 1.1E-09 2.3E-14 116.7 11.9 69 287-373 177-245 (562)
41 TIGR01645 half-pint poly-U bin 99.0 3.9E-10 8.6E-15 120.9 8.4 70 288-374 107-176 (612)
42 TIGR01648 hnRNP-R-Q heterogene 99.0 1.1E-09 2.3E-14 117.2 10.5 70 288-384 233-304 (578)
43 smart00362 RRM_2 RNA recogniti 99.0 1.4E-09 3E-14 81.1 8.1 64 290-372 1-64 (72)
44 TIGR01622 SF-CC1 splicing fact 99.0 8.2E-10 1.8E-14 114.2 8.9 71 285-373 86-156 (457)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 7.2E-10 1.6E-14 116.4 8.1 74 288-384 2-75 (481)
46 TIGR01622 SF-CC1 splicing fact 99.0 1.6E-09 3.4E-14 112.0 10.4 77 288-383 186-262 (457)
47 KOG0149 Predicted RNA-binding 99.0 5.3E-10 1.1E-14 105.9 6.1 67 288-371 12-78 (247)
48 PLN03213 repressor of silencin 99.0 1.1E-09 2.3E-14 112.6 8.7 68 287-375 9-78 (759)
49 KOG0148 Apoptosis-promoting RN 99.0 7.9E-10 1.7E-14 106.6 6.6 70 286-378 162-231 (321)
50 KOG0130 RNA-binding protein RB 99.0 7.4E-10 1.6E-14 97.3 5.7 82 286-384 70-151 (170)
51 PLN03121 nucleic acid binding 99.0 1.4E-09 3.1E-14 104.1 7.7 67 288-375 5-71 (243)
52 KOG0113 U1 small nuclear ribon 98.9 1.2E-09 2.7E-14 106.4 6.9 71 287-374 100-170 (335)
53 smart00360 RRM RNA recognition 98.9 4.2E-09 9.1E-14 78.0 8.2 63 293-372 1-63 (71)
54 COG0724 RNA-binding proteins ( 98.9 2.5E-09 5.5E-14 98.3 8.1 70 288-374 115-184 (306)
55 KOG0123 Polyadenylate-binding 98.9 3.2E-09 6.9E-14 108.3 8.7 107 249-385 46-152 (369)
56 KOG0108 mRNA cleavage and poly 98.9 4.5E-09 9.8E-14 108.9 8.8 80 289-387 19-98 (435)
57 KOG0125 Ataxin 2-binding prote 98.9 2.2E-09 4.7E-14 105.9 5.7 69 288-375 96-164 (376)
58 cd00590 RRM RRM (RNA recogniti 98.9 1.5E-08 3.2E-13 75.9 9.1 64 290-371 1-64 (74)
59 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 9.3E-09 2E-13 108.0 9.1 73 287-383 274-347 (481)
60 KOG0126 Predicted RNA-binding 98.8 7.2E-10 1.6E-14 101.6 -0.5 71 287-374 34-104 (219)
61 KOG0127 Nucleolar protein fibr 98.7 4.2E-08 9E-13 102.2 9.6 63 288-367 292-354 (678)
62 KOG0146 RNA-binding protein ET 98.7 3.4E-08 7.4E-13 95.3 7.3 89 285-391 16-104 (371)
63 KOG0131 Splicing factor 3b, su 98.7 3.4E-08 7.4E-13 90.7 5.8 79 287-384 8-86 (203)
64 KOG0148 Apoptosis-promoting RN 98.7 3.8E-08 8.2E-13 95.1 6.3 81 290-389 64-144 (321)
65 KOG2590 RNA-binding protein LA 98.6 2.7E-08 5.9E-13 103.0 5.3 63 198-267 301-363 (448)
66 KOG4208 Nucleolar RNA-binding 98.6 9E-08 1.9E-12 89.4 7.5 80 288-385 49-129 (214)
67 KOG4212 RNA-binding protein hn 98.6 7.6E-08 1.6E-12 98.1 7.5 70 287-374 43-113 (608)
68 smart00361 RRM_1 RNA recogniti 98.6 1.1E-07 2.3E-12 74.3 6.7 58 302-374 2-64 (70)
69 PF13893 RRM_5: RNA recognitio 98.6 1.7E-07 3.6E-12 69.6 7.3 48 305-374 1-48 (56)
70 TIGR01642 U2AF_lg U2 snRNP aux 98.6 7.1E-08 1.5E-12 101.0 6.9 66 285-374 172-249 (509)
71 KOG4207 Predicted splicing fac 98.5 9.7E-08 2.1E-12 89.3 5.6 77 288-383 13-89 (256)
72 KOG0127 Nucleolar protein fibr 98.5 9.6E-08 2.1E-12 99.5 5.7 69 288-374 117-185 (678)
73 KOG0105 Alternative splicing f 98.5 7.5E-08 1.6E-12 88.8 4.3 65 287-371 5-69 (241)
74 KOG0145 RNA-binding protein EL 98.5 1.5E-07 3.2E-12 90.7 5.8 70 288-374 41-110 (360)
75 KOG0132 RNA polymerase II C-te 98.5 2.3E-07 5.1E-12 99.9 7.6 82 285-389 418-499 (894)
76 KOG0110 RNA-binding protein (R 98.4 1.7E-07 3.7E-12 100.1 4.0 78 288-384 613-690 (725)
77 KOG0131 Splicing factor 3b, su 98.4 3.3E-07 7.2E-12 84.3 5.2 87 288-391 96-183 (203)
78 KOG0111 Cyclophilin-type pepti 98.4 1.9E-07 4E-12 88.2 2.8 71 287-374 9-79 (298)
79 KOG4205 RNA-binding protein mu 98.4 2.2E-07 4.8E-12 92.7 3.4 130 203-365 21-157 (311)
80 KOG0109 RNA-binding protein LA 98.4 2.7E-07 5.9E-12 90.0 3.7 61 290-375 4-64 (346)
81 KOG0153 Predicted RNA-binding 98.3 6.8E-07 1.5E-11 89.0 5.9 68 284-374 224-291 (377)
82 KOG0109 RNA-binding protein LA 98.3 1.5E-06 3.2E-11 85.0 7.9 71 288-385 78-148 (346)
83 COG5193 LHP1 La protein, small 98.3 1.3E-07 2.9E-12 95.5 0.3 61 198-260 271-331 (438)
84 KOG0123 Polyadenylate-binding 98.2 3.6E-06 7.7E-11 86.1 9.1 117 237-374 119-235 (369)
85 KOG0147 Transcriptional coacti 98.2 2.2E-06 4.9E-11 89.6 6.0 67 291-374 281-347 (549)
86 KOG0124 Polypyrimidine tract-b 98.2 2E-06 4.2E-11 86.3 4.9 70 288-374 113-182 (544)
87 KOG0110 RNA-binding protein (R 98.1 7E-06 1.5E-10 88.1 7.9 71 290-374 517-587 (725)
88 KOG0415 Predicted peptidyl pro 98.1 2.8E-06 6.1E-11 84.9 4.5 69 289-374 240-308 (479)
89 KOG0124 Polypyrimidine tract-b 98.1 5.4E-06 1.2E-10 83.2 6.3 65 289-370 211-275 (544)
90 KOG4206 Spliceosomal protein s 98.1 7.8E-06 1.7E-10 77.5 6.8 67 288-374 9-79 (221)
91 KOG0146 RNA-binding protein ET 98.0 3.9E-06 8.5E-11 81.3 3.4 81 285-384 282-362 (371)
92 PF08777 RRM_3: RNA binding mo 97.9 4.2E-05 9E-10 65.0 7.2 59 289-370 2-60 (105)
93 KOG0116 RasGAP SH3 binding pro 97.9 1E-05 2.3E-10 83.7 4.0 63 288-367 288-350 (419)
94 KOG0106 Alternative splicing f 97.9 8.8E-06 1.9E-10 77.3 3.2 67 290-383 3-69 (216)
95 KOG4660 Protein Mei2, essentia 97.8 1.1E-05 2.4E-10 84.6 3.8 66 285-372 72-137 (549)
96 KOG4212 RNA-binding protein hn 97.8 1.6E-05 3.4E-10 81.5 4.7 66 287-374 535-600 (608)
97 KOG4209 Splicing factor RNPS1, 97.8 1.7E-05 3.7E-10 76.3 4.0 74 283-374 96-169 (231)
98 KOG4205 RNA-binding protein mu 97.8 1.7E-05 3.7E-10 79.4 3.6 64 287-367 5-68 (311)
99 KOG0533 RRM motif-containing p 97.7 0.00012 2.6E-09 70.9 7.4 68 288-374 83-150 (243)
100 PF04059 RRM_2: RNA recognitio 97.6 0.00024 5.3E-09 59.6 8.2 77 289-382 2-81 (97)
101 KOG4661 Hsp27-ERE-TATA-binding 97.6 7E-05 1.5E-09 78.9 6.0 71 287-374 404-474 (940)
102 KOG4211 Splicing factor hnRNP- 97.6 0.00016 3.5E-09 75.2 8.3 83 288-392 103-186 (510)
103 KOG4454 RNA binding protein (R 97.6 4.4E-05 9.6E-10 72.3 3.7 68 288-374 9-76 (267)
104 KOG0151 Predicted splicing reg 97.6 7.1E-05 1.5E-09 80.5 5.3 81 286-380 172-252 (877)
105 KOG4211 Splicing factor hnRNP- 97.5 0.00019 4.2E-09 74.6 6.9 77 289-389 11-87 (510)
106 KOG1548 Transcription elongati 97.5 0.00027 5.8E-09 70.9 7.3 74 283-374 129-210 (382)
107 KOG0147 Transcriptional coacti 97.3 0.00024 5.2E-09 74.7 5.2 75 283-375 174-248 (549)
108 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00061 1.3E-08 50.8 4.8 52 289-364 2-53 (53)
109 KOG1457 RNA binding protein (c 97.2 0.00096 2.1E-08 63.6 7.0 71 288-374 34-104 (284)
110 KOG0226 RNA-binding proteins [ 97.2 0.00056 1.2E-08 66.2 5.3 71 287-374 189-259 (290)
111 KOG4206 Spliceosomal protein s 97.0 0.00096 2.1E-08 63.4 5.0 154 198-373 23-209 (221)
112 KOG1457 RNA binding protein (c 96.9 0.0012 2.6E-08 63.0 4.8 62 290-372 212-273 (284)
113 PF11608 Limkain-b1: Limkain b 96.9 0.0038 8.3E-08 51.2 6.7 67 289-384 3-74 (90)
114 KOG0106 Alternative splicing f 96.8 0.00048 1E-08 65.6 1.7 64 287-375 98-161 (216)
115 KOG1548 Transcription elongati 96.4 0.016 3.4E-07 58.5 8.9 134 213-372 164-339 (382)
116 KOG0105 Alternative splicing f 96.3 0.013 2.8E-07 54.7 7.1 68 289-380 116-183 (241)
117 KOG2314 Translation initiation 96.3 0.0074 1.6E-07 64.1 6.2 69 288-374 58-132 (698)
118 COG5175 MOT2 Transcriptional r 95.8 0.013 2.8E-07 59.0 5.2 73 286-374 112-192 (480)
119 KOG1190 Polypyrimidine tract-b 95.8 0.02 4.4E-07 58.9 6.6 71 289-383 298-369 (492)
120 KOG3152 TBP-binding protein, a 95.7 0.0037 8E-08 60.6 0.7 82 288-374 74-155 (278)
121 KOG0129 Predicted RNA-binding 95.6 0.016 3.5E-07 61.0 5.1 69 286-369 257-328 (520)
122 KOG3671 Actin regulatory prote 95.6 0.08 1.7E-06 55.8 10.0 6 197-202 498-503 (569)
123 KOG0120 Splicing factor U2AF, 95.4 0.012 2.7E-07 62.3 3.5 70 288-374 289-358 (500)
124 PF15023 DUF4523: Protein of u 95.1 0.044 9.6E-07 49.3 5.5 60 287-370 85-148 (166)
125 KOG4210 Nuclear localization s 94.8 0.015 3.2E-07 57.8 1.9 62 288-366 184-246 (285)
126 KOG1995 Conserved Zn-finger pr 94.8 0.034 7.4E-07 56.3 4.4 79 287-374 65-143 (351)
127 KOG4307 RNA binding protein RB 94.8 0.056 1.2E-06 58.9 6.3 67 290-374 869-936 (944)
128 KOG0128 RNA-binding protein SA 94.7 0.0072 1.6E-07 66.7 -0.5 66 286-368 665-730 (881)
129 KOG1365 RNA-binding protein Fu 94.7 0.05 1.1E-06 55.7 5.3 88 288-399 161-253 (508)
130 KOG1190 Polypyrimidine tract-b 94.7 0.018 3.8E-07 59.3 2.1 57 288-367 28-84 (492)
131 PF05172 Nup35_RRM: Nup53/35/4 94.4 0.088 1.9E-06 44.5 5.5 73 287-371 5-77 (100)
132 KOG1365 RNA-binding protein Fu 94.3 0.064 1.4E-06 54.9 5.2 81 289-390 281-364 (508)
133 PF07145 PAM2: Ataxin-2 C-term 94.3 0.029 6.2E-07 33.0 1.5 16 36-51 2-17 (18)
134 KOG0120 Splicing factor U2AF, 94.3 0.092 2E-06 55.9 6.4 58 303-374 424-481 (500)
135 KOG1456 Heterogeneous nuclear 94.1 0.13 2.7E-06 52.7 6.6 71 288-380 287-358 (494)
136 PF09421 FRQ: Frequency clock 94.0 0.037 8E-07 62.4 3.0 53 224-276 471-524 (989)
137 KOG0115 RNA-binding protein p5 93.4 0.057 1.2E-06 52.6 2.8 65 289-371 32-96 (275)
138 KOG2202 U2 snRNP splicing fact 93.3 0.042 9E-07 53.5 1.7 64 302-385 82-146 (260)
139 PF10309 DUF2414: Protein of u 93.2 0.31 6.7E-06 37.8 6.0 53 289-367 6-62 (62)
140 PF08675 RNA_bind: RNA binding 93.0 0.25 5.5E-06 40.6 5.5 55 290-369 10-64 (87)
141 KOG2068 MOT2 transcription fac 93.0 0.081 1.8E-06 53.2 3.2 73 286-372 75-150 (327)
142 KOG0128 RNA-binding protein SA 92.9 0.048 1E-06 60.4 1.7 69 288-374 736-804 (881)
143 KOG0129 Predicted RNA-binding 92.5 0.26 5.6E-06 52.2 6.3 63 287-366 369-432 (520)
144 KOG4307 RNA binding protein RB 92.4 8.6 0.00019 42.7 17.6 62 288-367 434-496 (944)
145 KOG1819 FYVE finger-containing 91.5 0.11 2.3E-06 55.0 2.1 8 304-311 741-748 (990)
146 KOG3671 Actin regulatory prote 91.2 2.1 4.6E-05 45.5 11.1 9 198-206 495-503 (569)
147 KOG4574 RNA-binding protein (c 89.5 0.26 5.7E-06 54.9 3.0 70 291-383 301-370 (1007)
148 KOG1923 Rac1 GTPase effector F 89.2 1.4 2.9E-05 49.0 8.0 11 290-300 530-540 (830)
149 KOG4676 Splicing factor, argin 88.3 0.73 1.6E-05 47.5 5.0 88 289-392 8-95 (479)
150 KOG0112 Large RNA-binding prot 88.1 0.16 3.6E-06 56.7 0.3 73 285-375 369-441 (975)
151 KOG1923 Rac1 GTPase effector F 88.0 1.5 3.1E-05 48.8 7.4 11 195-205 391-401 (830)
152 KOG2416 Acinus (induces apopto 87.5 0.48 1E-05 51.1 3.3 75 288-385 444-520 (718)
153 KOG2193 IGF-II mRNA-binding pr 87.2 0.9 1.9E-05 47.4 4.9 83 290-396 3-86 (584)
154 PF07576 BRAP2: BRCA1-associat 86.8 3.8 8.3E-05 35.2 7.9 70 294-382 19-89 (110)
155 KOG4660 Protein Mei2, essentia 86.4 2.1 4.5E-05 46.0 7.3 39 345-383 429-467 (549)
156 KOG4849 mRNA cleavage factor I 86.0 1.2 2.6E-05 45.5 5.0 69 289-374 81-151 (498)
157 KOG0112 Large RNA-binding prot 86.0 0.85 1.8E-05 51.3 4.3 73 288-383 455-527 (975)
158 KOG1456 Heterogeneous nuclear 85.4 0.72 1.6E-05 47.4 3.1 56 289-367 32-87 (494)
159 PF08952 DUF1866: Domain of un 83.0 3.6 7.8E-05 37.2 6.3 47 302-374 50-96 (146)
160 KOG1996 mRNA splicing factor [ 82.0 3 6.6E-05 41.7 5.8 54 302-371 300-353 (378)
161 KOG1830 Wiskott Aldrich syndro 81.6 14 0.0003 38.8 10.6 6 196-201 458-463 (518)
162 KOG0804 Cytoplasmic Zn-finger 80.8 3.5 7.6E-05 43.4 6.0 75 288-381 74-149 (493)
163 PF03467 Smg4_UPF3: Smg-4/UPF3 80.7 1.4 3E-05 40.8 2.9 73 287-374 6-82 (176)
164 KOG2135 Proteins containing th 79.0 0.95 2.1E-05 47.7 1.3 58 286-366 370-428 (526)
165 KOG2278 RNA:NAD 2'-phosphotran 75.3 2.1 4.5E-05 39.9 2.3 39 224-262 27-65 (207)
166 KOG4676 Splicing factor, argin 74.2 1.2 2.6E-05 46.1 0.5 61 288-369 151-211 (479)
167 PF11767 SET_assoc: Histone ly 74.0 10 0.00023 29.7 5.6 49 299-373 11-59 (66)
168 KOG1819 FYVE finger-containing 73.6 1.5 3.2E-05 46.7 1.1 7 191-197 633-639 (990)
169 PF01885 PTS_2-RNA: RNA 2'-pho 72.8 2.4 5.1E-05 39.6 2.1 52 225-276 26-82 (186)
170 COG5178 PRP8 U5 snRNP spliceos 71.1 3.4 7.5E-05 48.0 3.1 22 111-132 76-97 (2365)
171 PRK00819 RNA 2'-phosphotransfe 70.5 3 6.5E-05 38.8 2.2 51 224-276 26-78 (179)
172 KOG2318 Uncharacterized conser 64.6 17 0.00037 39.5 6.6 92 288-383 174-304 (650)
173 KOG2891 Surface glycoprotein [ 63.4 2.8 6.1E-05 41.7 0.5 32 289-320 150-193 (445)
174 PF10567 Nab6_mRNP_bdg: RNA-re 63.0 23 0.00051 35.5 6.8 71 286-366 13-83 (309)
175 PF04847 Calcipressin: Calcipr 59.9 20 0.00044 33.5 5.5 46 300-368 7-52 (184)
176 KOG4210 Nuclear localization s 57.3 6.5 0.00014 39.2 1.9 65 287-368 87-151 (285)
177 PF03468 XS: XS domain; Inter 55.7 10 0.00022 32.8 2.6 38 300-357 29-66 (116)
178 KOG1830 Wiskott Aldrich syndro 53.1 1.8E+02 0.0039 30.9 11.4 7 219-225 458-464 (518)
179 KOG4285 Mitotic phosphoprotein 50.7 28 0.00061 35.2 5.1 55 288-366 197-251 (350)
180 PRK11901 hypothetical protein; 49.3 15 0.00032 37.4 2.9 69 300-389 254-324 (327)
181 KOG2253 U1 snRNP complex, subu 49.0 9.4 0.0002 42.0 1.6 59 288-372 40-98 (668)
182 PF03276 Gag_spuma: Spumavirus 48.8 64 0.0014 35.1 7.6 11 303-313 417-427 (582)
183 KOG4849 mRNA cleavage factor I 48.6 1.8E+02 0.0038 30.3 10.4 9 288-296 413-421 (498)
184 KOG2675 Adenylate cyclase-asso 47.9 17 0.00037 38.4 3.2 15 204-218 335-349 (480)
185 PF03276 Gag_spuma: Spumavirus 47.7 86 0.0019 34.1 8.4 9 107-115 258-266 (582)
186 KOG0559 Dihydrolipoamide succi 38.1 1.2E+02 0.0027 31.6 7.5 40 215-270 272-311 (457)
187 KOG1925 Rac1 GTPase effector F 37.4 60 0.0013 35.1 5.3 21 289-315 520-540 (817)
188 PTZ00315 2'-phosphotransferase 37.3 24 0.00052 38.7 2.5 53 224-276 398-456 (582)
189 KOG3423 Transcription initiati 35.5 53 0.0011 30.4 4.0 89 194-313 69-166 (176)
190 KOG1925 Rac1 GTPase effector F 34.1 54 0.0012 35.5 4.4 44 226-269 339-388 (817)
191 KOG4483 Uncharacterized conser 33.6 65 0.0014 33.9 4.7 52 290-365 393-445 (528)
192 PRK14548 50S ribosomal protein 30.0 1.2E+02 0.0026 24.9 4.9 53 295-367 27-81 (84)
193 PF08544 GHMP_kinases_C: GHMP 29.9 2E+02 0.0043 22.0 6.2 47 301-369 35-81 (85)
194 COG5178 PRP8 U5 snRNP spliceos 29.1 41 0.0009 39.8 2.7 14 250-263 223-236 (2365)
195 KOG4410 5-formyltetrahydrofola 27.5 1.2E+02 0.0025 30.7 5.2 57 289-368 331-395 (396)
196 PF00837 T4_deiodinase: Iodoth 26.2 58 0.0013 31.8 2.8 92 219-312 141-236 (237)
197 TIGR03636 L23_arch archaeal ri 26.1 1.7E+02 0.0037 23.6 5.1 57 291-367 16-74 (77)
198 PF03439 Spt5-NGN: Early trans 24.9 72 0.0016 25.7 2.8 25 347-371 44-68 (84)
199 KOG1785 Tyrosine kinase negati 24.8 1.5E+02 0.0033 31.3 5.6 19 34-52 502-520 (563)
200 cd04904 ACT_AAAH ACT domain of 24.7 2.9E+02 0.0063 21.3 6.2 52 301-370 13-66 (74)
201 PF07292 NID: Nmi/IFP 35 domai 23.4 38 0.00081 28.1 0.9 25 285-309 49-73 (88)
202 PF08156 NOP5NT: NOP5NT (NUC12 20.2 39 0.00084 26.4 0.3 23 347-369 44-66 (67)
203 PF00403 HMA: Heavy-metal-asso 20.2 3.5E+02 0.0075 19.6 6.6 32 290-321 1-32 (62)
204 PF15513 DUF4651: Domain of un 20.2 1.2E+02 0.0025 23.7 2.9 19 302-320 8-26 (62)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.8e-43 Score=352.18 Aligned_cols=222 Identities=40% Similarity=0.519 Sum_probs=190.3
Q ss_pred CCCCCCCCCCCCCcccCcc-ccccccCCCCCcccccccc-------ccCCCCCChHHHHHHhhcccccccCCCcCcCHHH
Q 015730 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKK-------DHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (401)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~e~~~kI~~QvEfYFSd~NL~~D~fL 220 (401)
..+++.+|.++|+|....+ .......+...+....++. ..+...+++|+..+|.+||||||||+||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 4566778888888888666 4333333333333334433 3457788999999999999999999999999999
Q ss_pred HHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcc
Q 015730 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (401)
Q Consensus 221 ~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~ 300 (401)
+++|++|.+|||+|++|++|+|||+|+.++..++.||+.|.+|+|++||+||||..||++.+.+++.+|||+|.|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 301 t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
+.|.|++||+.||.|+.||||.|. .++.+.|.....-.+..++-||+|||+..+.|.||.+.||....|.
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr 313 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWR 313 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhh
Confidence 999999999999999999999884 4566777554433344568899999999999999999998877766
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.92 E-value=4e-26 Score=184.53 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=77.7
Q ss_pred hHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 195 ~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
.+++++|++||||||||+||++|.||+++|.++.+|||+|++|++|+||++++.+.+.|++||+.|..|||++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57889999999999999999999999999988899999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=5.1e-26 Score=182.02 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.5
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||.+|.||+++|.++++|||+|++|++|+|||+++.+.+.|++||+.|..|||++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=2.9e-25 Score=176.10 Aligned_cols=74 Identities=34% Similarity=0.482 Sum_probs=71.0
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||++|.||+++ |+.+|||||++|++|+||++++.|.+.|++||+.|..|+|++||++||.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~--md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQ--MDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHh--hCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 6899999999999999999999998 5789999999999999999999999999999999999999999999983
No 5
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=4.8e-25 Score=176.13 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.3
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||.+|.||+++|.++.+|||+|++|++|+|||+++.+ +.|++||+.|..|||++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 589999999999999999999999999899999999999999999999865 999999999999999999999998
No 6
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=6.2e-25 Score=173.31 Aligned_cols=73 Identities=33% Similarity=0.482 Sum_probs=70.5
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEeccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVR 273 (401)
+.|++||||||||+||.+|.||+++ |+.+|||||.+|++|+|||+++.|.+.|++||+.|..|+|+++|++||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~--md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQ--MDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHH--hccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 5799999999999999999999999 578999999999999999999999999999999999999999999998
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.90 E-value=8.4e-25 Score=176.48 Aligned_cols=79 Identities=49% Similarity=0.743 Sum_probs=76.3
Q ss_pred HHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEeccccccccC
Q 015730 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQ 275 (401)
Q Consensus 196 e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRRk 275 (401)
++.++|++||||||||+||.+|.||+++|..+ +|||+|++|++|+||++++.+.+.|++||+.|..|||++||++|||.
T Consensus 2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~ 80 (80)
T smart00715 2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR 80 (80)
T ss_pred hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence 67899999999999999999999999998877 99999999999999999999999999999999999999999999984
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.90 E-value=1e-24 Score=176.44 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=75.6
Q ss_pred hHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc--ceEEecccccc
Q 015730 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (401)
Q Consensus 195 ~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~--~LEVsedg~kV 272 (401)
+++..+|++||||||||+||++|.||+++|..+ +|||+|++|++|+|||+++.+.+.|++||+.|. .|||++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 568899999999999999999999999998655 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 015730 273 KR 274 (401)
Q Consensus 273 RR 274 (401)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=1.6e-24 Score=177.84 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.4
Q ss_pred HHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcC------------HHHHHHhhhcCcceEE
Q 015730 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (401)
Q Consensus 198 ~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d------------~e~I~eALk~S~~LEV 265 (401)
.++|++||||||||.||.+|.||+++|.++.+|||+|++|++|+||++++.+ .+.|++||+.|..|||
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred ecccccccc
Q 015730 266 SEDGKKIKR 274 (401)
Q Consensus 266 sedg~kVRR 274 (401)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=3.9e-24 Score=170.37 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=70.7
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++++.+.+.|++||+.|..|||++||++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999985 679999999999999999999999999999999999999999999983
No 11
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-23 Score=214.16 Aligned_cols=161 Identities=26% Similarity=0.362 Sum_probs=144.0
Q ss_pred CCCCCChHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecc
Q 015730 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (401)
Q Consensus 189 ~~~~~~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsed 268 (401)
....++.|+++.+++|||||||-+||..|.||+.+ ||+|.||+|.+|++|.+|++|+.|.++|+++|+.|..|+|+++
T Consensus 88 ~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDek 165 (684)
T KOG2591|consen 88 PSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEK 165 (684)
T ss_pred CCCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccC
Confidence 33456778999999999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhc--cCCeeEEEEecCCCCCCCCCCCCCcccccCccccC
Q 015730 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (401)
Q Consensus 269 g~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~ 346 (401)
|.+||... +.|+|++..||+++-+|+|+.||+. |=++.++.. +.
T Consensus 166 gekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~iscef------------------------a~ 211 (684)
T KOG2591|consen 166 GEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEF------------------------AH 211 (684)
T ss_pred ccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee------------------------ee
Confidence 99998764 3678899999999999999999986 444444443 33
Q ss_pred cceEEEEecCHHHHHHHHHHhcccccccccceEEEeecc
Q 015730 347 KLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~~ 385 (401)
...|||+|++.+||++|++.|.+++..|.+|.+|+.||+
T Consensus 212 N~nWyITfesd~DAQqAykylreevk~fqgKpImARIKa 250 (684)
T KOG2591|consen 212 NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKA 250 (684)
T ss_pred cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhh
Confidence 556999999999999999999999999999999999886
No 12
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=2.7e-23 Score=164.29 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.7
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||++|.||+++| +.+|||+|++|++|+||++++.+.+.|++||+.|..|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999985 689999999999999999999999999999999999999976 5765
No 13
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.87 E-value=4e-23 Score=163.32 Aligned_cols=72 Identities=32% Similarity=0.588 Sum_probs=67.6
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||++|.||+++| +.+|||+|++|++|+||++++.|.+.|++||+.|..|||+++ +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999985 789999999999999999999999999999999999999977 4664
No 14
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.87 E-value=7.1e-23 Score=163.47 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.7
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||.+|.||+++| +++|||+|++|++|+||++++.+.+.|++||+.|..|+|++++++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 58999999999999999999999997 889999999999999999999999999999999999999999999987
No 15
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.87 E-value=8.2e-23 Score=161.91 Aligned_cols=72 Identities=33% Similarity=0.583 Sum_probs=68.0
Q ss_pred HHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccccccc
Q 015730 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (401)
Q Consensus 199 ~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRR 274 (401)
++|++||||||||+||.+|.||+++ ++.+|||+|++|++|+||++++.+.+.|++||+.|..|||++ ++||+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~--m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRK--MDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHH--cCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 6899999999999999999999998 478999999999999999999999999999999999999998 46775
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.82 E-value=1.8e-20 Score=169.60 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=131.5
Q ss_pred ChHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc--ceEEeccccc
Q 015730 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (401)
Q Consensus 194 ~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~--~LEVsedg~k 271 (401)
..++.++|+.||||||+|.||++|+||+++|.+..+|||+|.++..|+|+..++.|...|++||+.|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 45667889999999999999999999999998889999999999999999999999999999999886 7899999999
Q ss_pred cccCC--CCCc---chhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccC
Q 015730 272 IKRQN--PLTE---SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (401)
Q Consensus 272 VRRk~--Pl~e---~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~ 346 (401)
+||.. ||++ ........|++|.+ +.+...++|..+-+ |++.+|.+++-.. .....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99964 7765 34566778999988 67777888888777 8999998864321 11234
Q ss_pred cceEEEEecCHHHHHHHHHHhc
Q 015730 347 KLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln 368 (401)
+|..||.|.+.+.|..++++-.
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCceEEEeecHHHHHhhhhhhh
Confidence 8999999999999988887653
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.79 E-value=1.8e-20 Score=143.88 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.1
Q ss_pred HhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhh-cCHHHHHHhhhcC
Q 015730 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (401)
Q Consensus 201 I~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt-~d~e~I~eALk~S 260 (401)
|++||||||||+||.+|.||+++|..+++|||+|++|++|+||++++ .+.+.|.+||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 68999999999999999999999998889999999999999999999 8999999999986
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=3.2e-13 Score=136.33 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=69.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|+.|+|++++.++. .||||||+|++.++|++||+.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT-----------------PRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999999999987643321 389999999999999999999
Q ss_pred hcccccccccceEEEeecccC
Q 015730 367 LHFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~ 387 (401)
||+..+......+.+.+..+.
T Consensus 255 lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred hCCCccCCCceeEEEEECCcc
Confidence 999877665456666665443
No 19
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=9.8e-14 Score=139.06 Aligned_cols=163 Identities=26% Similarity=0.328 Sum_probs=132.6
Q ss_pred cccCCCCCChHHHHH---------------Hhhccccccc-----CCCcCcCHHHHHhhccC--CCCceecccccchhhH
Q 015730 186 KDHQHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFKKI 243 (401)
Q Consensus 186 ~~~~~~~~~~e~~~k---------------I~~QvEfYFS-----d~NL~~D~fL~~~i~~~--~eG~Vpi~~i~sFkKv 243 (401)
+.-..++++++.+.+ +..|+||||| |.|+.+|+||+..-.++ .+|||+|.++++|++|
T Consensus 45 t~~~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~ 124 (438)
T COG5193 45 TVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRM 124 (438)
T ss_pred CCcchhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccc
Confidence 334566677777777 9999999999 99999999999864332 4899999999999999
Q ss_pred HhhhcCHHHHHHhhhcC---cceEEeccccccccCCCCCcchhh--hhhhhheeccCCCCcccH--------HHHHHHHh
Q 015730 244 KAIISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKIFS 310 (401)
Q Consensus 244 K~lt~d~e~I~eALk~S---~~LEVsedg~kVRRk~Pl~e~~~~--e~~~rtVyV~nLP~d~t~--------edL~~lFs 310 (401)
+..+...+.+..+|++| .+++++.+|.+++|..++...... ....|.+|+.+|....+. ++++..|.
T Consensus 125 k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p 204 (438)
T COG5193 125 KNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFP 204 (438)
T ss_pred cccCCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCC
Confidence 99999999999999999 789999999998888766543322 344688999999876543 49999999
Q ss_pred c--cCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 311 A--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 311 ~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
. .|.+..|+++++- +. . .++|..|++|.....|+++..
T Consensus 205 ~h~h~~~~~i~~rrd~----------~n-----k--n~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 205 PHYHAPPSQIRNRRDW----------LN-----K--NFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred CcccCChhhccchhhh----------hh-----c--cccCcccccccChHHHHHHhc
Confidence 8 6788899987642 11 1 237889999999999999985
No 20
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.38 E-value=1.8e-12 Score=115.55 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=65.1
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++|+++|+++|++||.|..|+|+.+..++. .+|||||+|++.|+|++|++.|
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR-----------------SRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHHc
Confidence 56899999999999999999999999999999987654322 3899999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
|+..+... .+.+.+.
T Consensus 97 ng~~i~Gr--~l~V~~a 111 (144)
T PLN03134 97 DGKELNGR--HIRVNPA 111 (144)
T ss_pred CCCEECCE--EEEEEeC
Confidence 98766553 4444443
No 21
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=2.8e-12 Score=97.51 Aligned_cols=66 Identities=35% Similarity=0.398 Sum_probs=57.3
Q ss_pred eeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccc
Q 015730 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFM 370 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~ 370 (401)
|||+|||.++|+++|+++|+.||.|..+.+.... . + ..+|+|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~----------~-------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-S----------G-------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-T----------S-------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-c----------c-------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997531 0 1 13899999999999999999999987
Q ss_pred cccc
Q 015730 371 IMLF 374 (401)
Q Consensus 371 ~~~~ 374 (401)
.+..
T Consensus 63 ~~~~ 66 (70)
T PF00076_consen 63 KING 66 (70)
T ss_dssp EETT
T ss_pred EECc
Confidence 6554
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.31 E-value=4.1e-12 Score=126.50 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=69.0
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|||+|||.++++++|+++|++||.|.+|+|+++..++. .||||||+|++.++|.+|++.||
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-----------------skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ-----------------CKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHhC
Confidence 3699999999999999999999999999999998754332 38999999999999999999999
Q ss_pred ccccccccceEEEeecccCH
Q 015730 369 FMIMLFFFSAFCLMFVTQTN 388 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (401)
+..+.. ..+.+.|+..+.
T Consensus 333 G~~~~g--r~i~V~~~~~~~ 350 (352)
T TIGR01661 333 GYTLGN--RVLQVSFKTNKA 350 (352)
T ss_pred CCEECC--eEEEEEEccCCC
Confidence 977544 567777766553
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=3.7e-11 Score=128.74 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=61.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++++++|+++|+.||.|++++|.++..++ ..||||||+|++.++|.+|++.|
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg-----------------ksKGfGFVeFe~~e~A~kAI~am 266 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR-----------------GHKGYGFIEYNNLQSQSEAIASM 266 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC-----------------CcCCeEEEEECCHHHHHHHHHHh
Confidence 4689999999999999999999999999999998764322 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 267 Ng~elgG 273 (612)
T TIGR01645 267 NLFDLGG 273 (612)
T ss_pred CCCeeCC
Confidence 9886554
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.24 E-value=1.7e-11 Score=122.05 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=61.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|||+|||.++|+++|+++|+.||.|..|+|++++.++. ++|||||+|++.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~-----------------s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ-----------------SLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc-----------------cceEEEEEECcHHHHHHHHhhc
Confidence 46899999999999999999999999999999998754321 3899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 66 ~g~~l~g 72 (352)
T TIGR01661 66 NGLRLQN 72 (352)
T ss_pred ccEEECC
Confidence 9876554
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.23 E-value=1.8e-11 Score=123.67 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=62.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|+.|+|+++..+++ .+|||||||+++++|++||++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~-----------------srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-----------------SFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cCcEEEEEEccHHHHHHHHHH
Confidence 468999999999999999999999999999999987654322 389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 169 LnG~~l~g 176 (346)
T TIGR01659 169 LNGITVRN 176 (346)
T ss_pred cCCCccCC
Confidence 98866544
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=4.6e-11 Score=127.03 Aligned_cols=89 Identities=21% Similarity=0.336 Sum_probs=69.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+||+.++|+++|+++|+.||.|+.|+++++.+ + ..+|||||+|++.++|++|+++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~-g-----------------~~~g~gfV~f~~~~~A~~A~~~ 345 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK-G-----------------VSRGFGFVCFSNPEEANRAVTE 345 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCCeEEEEeCCHHHHHHHHHH
Confidence 356799999999999999999999999999999987521 1 1389999999999999999999
Q ss_pred hcccccccccceEEEeecccCHHHHHHHHH
Q 015730 367 LHFMIMLFFFSAFCLMFVTQTNEIRTSFLA 396 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~~e~R~~~~~ 396 (401)
||+..+. ++.+.+.+.. .++.|+..+.
T Consensus 346 ~~g~~~~--gk~l~V~~a~-~k~~~~~~~~ 372 (562)
T TIGR01628 346 MHGRMLG--GKPLYVALAQ-RKEQRRAHLQ 372 (562)
T ss_pred hcCCeeC--CceeEEEecc-CcHHHHHHHH
Confidence 9985543 3566666554 4444444433
No 27
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.7e-11 Score=112.92 Aligned_cols=72 Identities=25% Similarity=0.306 Sum_probs=66.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+..+|-|.||++++++++|+++|..||.|.+|.|.+++.+|. .||||||.|+++++|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 567899999999999999999999999999999999887654 299999999999999999999
Q ss_pred hcccccccc
Q 015730 367 LHFMIMLFF 375 (401)
Q Consensus 367 ln~~~~~~~ 375 (401)
||+.....+
T Consensus 251 LnG~gyd~L 259 (270)
T KOG0122|consen 251 LNGYGYDNL 259 (270)
T ss_pred ccCcccceE
Confidence 999887775
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1e-10 Score=90.02 Aligned_cols=64 Identities=31% Similarity=0.437 Sum_probs=53.4
Q ss_pred eeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccc
Q 015730 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFM 370 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~ 370 (401)
|||+|||.+++.++|.++|+.||.|..|++.+.+. + ..+|+|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~-----------------~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G-----------------QSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c-----------------ccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999976432 1 13899999999999999999998755
Q ss_pred cc
Q 015730 371 IM 372 (401)
Q Consensus 371 ~~ 372 (401)
.+
T Consensus 63 ~~ 64 (70)
T PF14259_consen 63 EI 64 (70)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 29
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.5e-11 Score=101.99 Aligned_cols=74 Identities=24% Similarity=0.175 Sum_probs=64.4
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..+++||||+||.+.+++|.|-++|+++|.|..|-|-.++ .+|+ .+|||||||-+.++|+.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr-----------~kkt------pCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDR-----------FKKT------PCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEecccc-----------CCcC------ccceEEEEEecchhHHHHH
Confidence 3457899999999999999999999999999999886553 3343 3999999999999999999
Q ss_pred HHhcccccccc
Q 015730 365 SHLHFMIMLFF 375 (401)
Q Consensus 365 ~~ln~~~~~~~ 375 (401)
+.+|+..+...
T Consensus 96 ryisgtrLddr 106 (153)
T KOG0121|consen 96 RYISGTRLDDR 106 (153)
T ss_pred HHhccCccccc
Confidence 99999887763
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.3e-10 Score=116.38 Aligned_cols=151 Identities=23% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHHHhhccCCCCceecccccch-hhHHhhh----c--CHHHHHHhhhc--CcceEEeccccccccCCCCCcchhhhh-h
Q 015730 218 DHLIRFILKDPEGYVPISTVASF-KKIKAII----S--SHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEEL-Q 287 (401)
Q Consensus 218 ~fL~~~i~~~~eG~Vpi~~i~sF-kKvK~lt----~--d~e~I~eALk~--S~~LEVsedg~kVRRk~Pl~e~~~~e~-~ 287 (401)
+.+++.|++-.+|.|++-+..+= +|+|+.. + +-..++.+-++ +..+.|....-.|....|..+.+.+.+ +
T Consensus 179 eeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~ 258 (506)
T KOG0117|consen 179 EEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSK 258 (506)
T ss_pred HHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhh
Confidence 35566678889999998887654 2443332 1 22222222222 335677766666776666655443322 3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-+.|||+||+.++|+|.|+++|+.||.|++|..+ +.||||.|.++++|.+|++++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------------------------rDYaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------------------------RDYAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-------------------------cceeEEeecchHHHHHHHHHh
Confidence 4579999999999999999999999999999763 558999999999999999999
Q ss_pred cccccccccceEEEee-cccCHHHHHH
Q 015730 368 HFMIMLFFFSAFCLMF-VTQTNEIRTS 393 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~-~~~~~e~R~~ 393 (401)
|+..+.....+..... +.+++..|+.
T Consensus 314 ngkeldG~~iEvtLAKP~~k~k~~r~~ 340 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKPVDKKKKERKA 340 (506)
T ss_pred cCceecCceEEEEecCChhhhccchhh
Confidence 9999888655555443 2344444543
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=3.4e-10 Score=95.34 Aligned_cols=67 Identities=28% Similarity=0.372 Sum_probs=59.4
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.|.|||.|||+++|.|++-++|.+||.|..|||-..+ ..+|.|||.|++..+|++||+.|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------------------~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------------------ETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------------------CcCceEEEEehHhhhHHHHHHHh
Confidence 6899999999999999999999999999999993221 23899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++.-.+.
T Consensus 78 sg~n~~~ 84 (124)
T KOG0114|consen 78 SGYNVDN 84 (124)
T ss_pred cccccCC
Confidence 9876655
No 32
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2e-10 Score=111.25 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++|+++|+++|+.||+|+.|+|++++. .+|||||+|++.++|++|+. |
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All-L 62 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL-L 62 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-h
Confidence 58999999999999999999999999999999976421 27899999999999999995 8
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 63 nG~~l~g 69 (260)
T PLN03120 63 SGATIVD 69 (260)
T ss_pred cCCeeCC
Confidence 8776655
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.1e-10 Score=106.24 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=66.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.+.|||+||+.+++..||+.+|++||.|..|+|.+- .-|||||||++.-+|+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 578999999999999999999999999999999641 2789999999999999999999
Q ss_pred cccccccccceEEEeecccC
Q 015730 368 HFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~~~ 387 (401)
++..++.. .+.+.+....
T Consensus 68 DG~~~cG~--r~rVE~S~G~ 85 (195)
T KOG0107|consen 68 DGKDICGS--RIRVELSTGR 85 (195)
T ss_pred CCccccCc--eEEEEeecCC
Confidence 99987773 6666665444
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=5.2e-10 Score=113.81 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=64.3
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...+-|||+.||.|+.+++|.-+|++.|+|..+||+.+..+|. +||||||.|.+.++|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~-----------------nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD-----------------NRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC-----------------CcceEEEEeecHHHHHHHHH
Confidence 3578899999999999999999999999999999998865442 59999999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
+||+..+..
T Consensus 144 ~lnn~Eir~ 152 (506)
T KOG0117|consen 144 ELNNYEIRP 152 (506)
T ss_pred HhhCccccC
Confidence 999885544
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=8.1e-11 Score=119.16 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=68.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+.|||+-|+..+|+.+|+++|++||.|+.++|+|+.+- ..||||||.|+++|.|..||+.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~------------------~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG------------------LSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccc------------------cccceeEEEEehHHHHHHHHHh
Confidence 4689999999999999999999999999999999986420 1399999999999999999999
Q ss_pred hccccccc-ccceEEEeec
Q 015730 367 LHFMIMLF-FFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~-~~~~~~~~~~ 384 (401)
||+.-.+. -..+++++|.
T Consensus 185 ~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hccceeeccCCCceEEEec
Confidence 99875555 4567787775
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.3e-10 Score=115.86 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=67.5
Q ss_pred CCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecC
Q 015730 277 PLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (401)
Q Consensus 277 Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes 356 (401)
.+...+..+.+...+||+-||..+++.||+++|++||.|..|.|++|+.++- .+|||||.|.+
T Consensus 23 ~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~-----------------s~gcCFv~~~t 85 (510)
T KOG0144|consen 23 SLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQ-----------------SKGCCFVKYYT 85 (510)
T ss_pred CCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCc-----------------ccceEEEEecc
Confidence 3444444555677899999999999999999999999999999998875431 38999999999
Q ss_pred HHHHHHHHHHhccccccc
Q 015730 357 VELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 357 ~E~A~kAv~~ln~~~~~~ 374 (401)
+++|.+|+..|.+.+.+-
T Consensus 86 rk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 86 RKEADEAINALHNQKTLP 103 (510)
T ss_pred HHHHHHHHHHhhcccccC
Confidence 999999999997765544
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.07 E-value=4.1e-10 Score=120.37 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=60.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++ .++ .++|||||+|.+.|+|++||+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG-----------------~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG-----------------QNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC-----------------CccceEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999876 222 1489999999999999999999
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
||+..+.
T Consensus 119 lng~~i~ 125 (578)
T TIGR01648 119 LNNYEIR 125 (578)
T ss_pred cCCCeec
Confidence 9876553
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2.3e-10 Score=109.77 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=88.3
Q ss_pred HHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCC
Q 015730 250 HSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGG 329 (401)
Q Consensus 250 ~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~ 329 (401)
.++..+|+..-.-|.+.. +.|+....-+.. +.+....|||++||..+|..+|+.+|+.||.|..-||+-++.++-
T Consensus 93 p~DAe~AintlNGLrLQ~--KTIKVSyARPSs--~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~- 167 (360)
T KOG0145|consen 93 PKDAEKAINTLNGLRLQN--KTIKVSYARPSS--DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL- 167 (360)
T ss_pred hHHHHHHHhhhcceeecc--ceEEEEeccCCh--hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce-
Confidence 345556666655566653 344443332322 335578999999999999999999999999999999987765432
Q ss_pred CCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEeecc
Q 015730 330 ASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 330 ~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~~ 385 (401)
.||.+||.|+.+++|+.||+.||+.+...-..++.+.|..
T Consensus 168 ----------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 168 ----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred ----------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 3899999999999999999999999988877788887753
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.05 E-value=8.3e-10 Score=115.49 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=61.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..++|+++..++ .++|||||+|++.++|.+||+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-----------------~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-----------------LSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHHHc
Confidence 4689999999999999999999999999999998654322 13899999999999999999999
Q ss_pred cccccccc
Q 015730 368 HFMIMLFF 375 (401)
Q Consensus 368 n~~~~~~~ 375 (401)
|+..+...
T Consensus 358 ~g~~~~~~ 365 (509)
T TIGR01642 358 NGKDTGDN 365 (509)
T ss_pred CCCEECCe
Confidence 98876553
No 40
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.05 E-value=1.1e-09 Score=116.70 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=60.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+||+.++|+++|+++|+.||.|..|+++++.+ + ..+|||||+|++.++|.+|++.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-g-----------------~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-G-----------------RSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999999999999976531 1 1389999999999999999999
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
|++..+.
T Consensus 239 l~g~~i~ 245 (562)
T TIGR01628 239 MNGKKIG 245 (562)
T ss_pred hCCcEec
Confidence 9988765
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.04 E-value=3.9e-10 Score=120.92 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=61.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++++++|+++|++||.|..|+|++++.+++ +||||||+|++.++|++|++.|
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk-----------------skGfAFVeF~s~e~A~~Ai~~l 169 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK-----------------HKGFAFVEYEVPEAAQLALEQM 169 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC-----------------cCCeEEEEeCcHHHHHHHHHhc
Confidence 57899999999999999999999999999999987654332 3899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 170 nG~~i~G 176 (612)
T TIGR01645 170 NGQMLGG 176 (612)
T ss_pred CCeEEec
Confidence 8876544
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.02 E-value=1.1e-09 Score=117.22 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=60.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhcc--CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~f--G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++|||+||+.++|+++|+++|++| |+|+.|+++ ++||||+|++.++|++|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHHH
Confidence 4789999999999999999999999 999999763 6799999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.||+..+... .+.+.+.
T Consensus 288 ~lnG~~i~Gr--~I~V~~A 304 (578)
T TIGR01648 288 ELNGKELEGS--EIEVTLA 304 (578)
T ss_pred HhCCCEECCE--EEEEEEc
Confidence 9998876553 4444443
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=99.02 E-value=1.4e-09 Score=81.08 Aligned_cols=64 Identities=34% Similarity=0.496 Sum_probs=55.6
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+|||+|||.+++.++|+++|+.||.|..+++.+.. + ..+|+|||+|.+.++|++|++.+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~-----------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G-----------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C-----------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999987532 0 1378999999999999999999987
Q ss_pred ccc
Q 015730 370 MIM 372 (401)
Q Consensus 370 ~~~ 372 (401)
...
T Consensus 62 ~~~ 64 (72)
T smart00362 62 TKL 64 (72)
T ss_pred cEE
Confidence 543
No 44
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.01 E-value=8.2e-10 Score=114.16 Aligned_cols=71 Identities=30% Similarity=0.366 Sum_probs=60.4
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
+...++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~-----------------skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR-----------------SKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999987654321 3899999999999999999
Q ss_pred HHhcccccc
Q 015730 365 SHLHFMIML 373 (401)
Q Consensus 365 ~~ln~~~~~ 373 (401)
. |++..+.
T Consensus 149 ~-l~g~~~~ 156 (457)
T TIGR01622 149 A-LTGQMLL 156 (457)
T ss_pred H-hCCCEEC
Confidence 6 6665543
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.00 E-value=7.2e-10 Score=116.41 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=60.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
+|+|||+|||.++++++|+++|+.||.|.+|+|+. .||||||||++.|+|++|++.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 58999999999999999999999999999999863 1789999999999999999987
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
+..-....+..+.+.+.
T Consensus 59 ~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYS 75 (481)
T ss_pred hcCCceEcCeEEEEEec
Confidence 43322233345555554
No 46
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.00 E-value=1.6e-09 Score=112.04 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=64.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|.+|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~-----------------~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR-----------------SKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHHhc
Confidence 57899999999999999999999999999999987543221 3899999999999999999999
Q ss_pred cccccccccceEEEee
Q 015730 368 HFMIMLFFFSAFCLMF 383 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~ 383 (401)
|+..+.. ..+.+.+
T Consensus 249 ~g~~i~g--~~i~v~~ 262 (457)
T TIGR01622 249 NGFELAG--RPIKVGY 262 (457)
T ss_pred CCcEECC--EEEEEEE
Confidence 9865543 4555555
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=5.3e-10 Score=105.93 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=59.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-..|||+||++++..|.|+++|++||+|..+.|+.++.++++ |||+||+|.+.|+|++||+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs-----------------kGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS-----------------KGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc-----------------cceeeEEeecHHHHHHHhcCC
Confidence 457999999999999999999999999999999888776542 999999999999999999977
Q ss_pred cccc
Q 015730 368 HFMI 371 (401)
Q Consensus 368 n~~~ 371 (401)
|-.+
T Consensus 75 ~piI 78 (247)
T KOG0149|consen 75 NPII 78 (247)
T ss_pred CCcc
Confidence 6444
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=98.99 E-value=1.1e-09 Score=112.64 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=59.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH--HHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~--E~A~kAv 364 (401)
...+|||+||.++++.++|+.+|+.||.|.+|.|+|.+ .||||||+|.+. +++.+||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---------------------GRGFAFVEMssdddaEeeKAI 67 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---------------------GRSFAYIDFSPSSTNSLTKLF 67 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---------------------CCceEEEEecCCcHHHHHHHH
Confidence 34689999999999999999999999999999997431 189999999987 7899999
Q ss_pred HHhcccccccc
Q 015730 365 SHLHFMIMLFF 375 (401)
Q Consensus 365 ~~ln~~~~~~~ 375 (401)
+.||+...+..
T Consensus 68 SaLNGAEWKGR 78 (759)
T PLN03213 68 STYNGCVWKGG 78 (759)
T ss_pred HHhcCCeecCc
Confidence 99998875553
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.9e-10 Score=106.60 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=62.5
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.+.+||||+||+..+|+++|++.|+.||.|..||+.. -+||+||.|++.|+|.+||-
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-----------------------~qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-----------------------DQGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-----------------------ccceEEEEecchhhHHHHHH
Confidence 4678999999999999999999999999999999953 28999999999999999999
Q ss_pred Hhcccccccccce
Q 015730 366 HLHFMIMLFFFSA 378 (401)
Q Consensus 366 ~ln~~~~~~~~~~ 378 (401)
.+|+..+.....+
T Consensus 219 ~mNntei~G~~Vk 231 (321)
T KOG0148|consen 219 QMNNTEIGGQLVR 231 (321)
T ss_pred HhcCceeCceEEE
Confidence 9999887774333
No 50
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=7.4e-10 Score=97.29 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=68.3
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
+...+|||.++.+.+++++|.+.|..||+|++|.+..++.+|. -||||+|||++.++|++|+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy-----------------~KGYaLvEYet~keAq~A~~ 132 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGY-----------------VKGYALVEYETLKEAQAAID 132 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccc-----------------ccceeeeehHhHHHHHHHHH
Confidence 3467899999999999999999999999999999977654332 29999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.+|+..++......-++|+
T Consensus 133 ~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 133 ALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred hccchhhhCCceeEEEEEe
Confidence 9999888875444444443
No 51
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.96 E-value=1.4e-09 Score=104.09 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=58.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..||||+||+..+|+++|+++|+.||+|..|+|++++. .++||||+|+++++|+.|+ .|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAl-lL 63 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAV-LL 63 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHH-hc
Confidence 57999999999999999999999999999999986521 1579999999999999999 58
Q ss_pred cccccccc
Q 015730 368 HFMIMLFF 375 (401)
Q Consensus 368 n~~~~~~~ 375 (401)
|+..+...
T Consensus 64 nGa~l~d~ 71 (243)
T PLN03121 64 SGATIVDQ 71 (243)
T ss_pred CCCeeCCc
Confidence 88776663
No 52
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=106.41 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=63.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.-+||||.-|+.++++..|++.|++||.|+.|+|++++-+++ .||||||||+++-+...|++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk-----------------skGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK-----------------SKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC-----------------ccceEEEEeccHHHHHHHHHh
Confidence 368999999999999999999999999999999999876553 399999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
..+.++..
T Consensus 163 adG~~Idg 170 (335)
T KOG0113|consen 163 ADGIKIDG 170 (335)
T ss_pred ccCceecC
Confidence 88665444
No 53
>smart00360 RRM RNA recognition motif.
Probab=98.94 E-value=4.2e-09 Score=78.05 Aligned_cols=63 Identities=37% Similarity=0.511 Sum_probs=53.2
Q ss_pred ccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccc
Q 015730 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIM 372 (401)
Q Consensus 293 V~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~ 372 (401)
|+|||.+++.++|+++|+.||.|..+++.....++ ..+|+|||+|.+.++|.+|++.+++...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~-----------------~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTG-----------------KSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCC-----------------CCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 57999999999999999999999999987543211 2388999999999999999999986554
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.93 E-value=2.5e-09 Score=98.29 Aligned_cols=70 Identities=33% Similarity=0.442 Sum_probs=61.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++++++|.++|+.||.|..|++.+++.++ ..+|||||+|.+.++|.+|+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~-----------------~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETG-----------------KSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccC-----------------ccCceEEEEecCHHHHHHHHHHc
Confidence 5899999999999999999999999999999998764222 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++.....
T Consensus 178 ~~~~~~~ 184 (306)
T COG0724 178 NGKELEG 184 (306)
T ss_pred CCCeECC
Confidence 9666555
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.2e-09 Score=108.32 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=78.4
Q ss_pred CHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCC
Q 015730 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (401)
Q Consensus 249 d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~ 328 (401)
+..++..||..-+.-.+ .|+.||-.+... +...|||+||+.+++..+|.++|+.||+|.++++..+..
T Consensus 46 ~~~da~~A~~~~n~~~~--~~~~~rim~s~r-------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--- 113 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVL--KGKPIRIMWSQR-------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--- 113 (369)
T ss_pred CHHHHHHHHHHcCCccc--CCcEEEeehhcc-------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---
Confidence 34455555555433222 355555443211 233499999999999999999999999999999976531
Q ss_pred CCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEeecc
Q 015730 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~~ 385 (401)
+.||| ||+|+++++|++|++.+|+.+.... +.|+..+..
T Consensus 114 ----------------g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-ki~vg~~~~ 152 (369)
T KOG0123|consen 114 ----------------GSKGY-FVQFESEESAKKAIEKLNGMLLNGK-KIYVGLFER 152 (369)
T ss_pred ----------------Cceee-EEEeCCHHHHHHHHHHhcCcccCCC-eeEEeeccc
Confidence 13899 9999999999999999999987774 667777544
No 56
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=4.5e-09 Score=108.87 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=68.7
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|||+|+|+++++++|..+|+..|.|.++|+++|+.+|+ .|||+|+||.+.++|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 8999999999999999999999999999999999877654 39999999999999999999999
Q ss_pred ccccccccceEEEeecccC
Q 015730 369 FMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~ 387 (401)
+..... ..+.+.++...
T Consensus 82 g~~~~g--r~l~v~~~~~~ 98 (435)
T KOG0108|consen 82 GAEFNG--RKLRVNYASNR 98 (435)
T ss_pred CcccCC--ceEEeeccccc
Confidence 776444 45565555333
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=2.2e-09 Score=105.87 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=62.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.+.|+|+|||+..-+.||+.+|.+||+|..|.|++.. | +.|||+||+|++.+||++|-++|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE----------R---------GSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE----------R---------GSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc----------C---------CCCccceEEecChhhHHHHHHHh
Confidence 5789999999999999999999999999999998632 2 35999999999999999999999
Q ss_pred cccccccc
Q 015730 368 HFMIMLFF 375 (401)
Q Consensus 368 n~~~~~~~ 375 (401)
++..++.-
T Consensus 157 Hgt~VEGR 164 (376)
T KOG0125|consen 157 HGTVVEGR 164 (376)
T ss_pred hcceeece
Confidence 99988874
No 58
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.87 E-value=1.5e-08 Score=75.86 Aligned_cols=64 Identities=34% Similarity=0.464 Sum_probs=55.9
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+|+|+|||.+++.++|+++|+.||.|..+.+...... ..+|+|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999754211 1378999999999999999999988
Q ss_pred cc
Q 015730 370 MI 371 (401)
Q Consensus 370 ~~ 371 (401)
..
T Consensus 63 ~~ 64 (74)
T cd00590 63 KE 64 (74)
T ss_pred Ce
Confidence 76
No 59
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.83 E-value=9.3e-09 Score=108.05 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=61.6
Q ss_pred hhhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+||+. .+|+++|+++|+.||.|.+|+++++ .+|||||+|++.++|++|++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 357899999997 6999999999999999999999753 17899999999999999999
Q ss_pred HhcccccccccceEEEee
Q 015730 366 HLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~ 383 (401)
.||+..+.. ..+.+.+
T Consensus 332 ~lng~~l~g--~~l~v~~ 347 (481)
T TIGR01649 332 HLNGVKLFG--KPLRVCP 347 (481)
T ss_pred HhCCCEECC--ceEEEEE
Confidence 999976654 3444443
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=7.2e-10 Score=101.60 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=65.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
++.-|||+|||++.|+.||-.+||+||+|..|.++|++.+|++ |||||.+|++.-+..-||..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS-----------------KGFaFLcYEDQRSTILAVDN 96 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS-----------------KGFAFLCYEDQRSTILAVDN 96 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc-----------------cceEEEEecCccceEEEEec
Confidence 4678999999999999999999999999999999999876642 99999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..++.
T Consensus 97 ~NGiki~g 104 (219)
T KOG0126|consen 97 LNGIKILG 104 (219)
T ss_pred cCCceecc
Confidence 99988776
No 61
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=4.2e-08 Score=102.17 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=57.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.+||||.|||+|+|+++|.+.|++||+|.+++|+..+.++. .+|+|||.|.+..+|++||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 47999999999999999999999999999999998866543 2899999999999999999977
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.4e-08 Score=95.34 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=74.3
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|.|||+-|...-.+||++++|..||.|+.+.+++-.+ -..||||||.|.+--||+.||
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d------------------g~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD------------------GNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC------------------CCCCCceEEEeccchHHHHHH
Confidence 33579999999999999999999999999999999876321 234999999999999999999
Q ss_pred HHhcccccccccceEEEeecccCHHHH
Q 015730 365 SHLHFMIMLFFFSAFCLMFVTQTNEIR 391 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~~~~e~R 391 (401)
..|.+...+-+.+.-++++.+.+++||
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHH
Confidence 999988888866666666666666654
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.65 E-value=3.4e-08 Score=90.70 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+..||||+||+..++++-|-++|-+.|.|.+|++-+++-++ ..+|||||||.++|+|+.||+-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHHH
Confidence 46799999999999999999999999999999985443221 2489999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|| .+.+. ++++.+...
T Consensus 71 ln-~VkLY-grpIrv~ka 86 (203)
T KOG0131|consen 71 LN-MVKLY-GRPIRVNKA 86 (203)
T ss_pred HH-HHHhc-CceeEEEec
Confidence 99 44444 355555443
No 64
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.8e-08 Score=95.14 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=67.7
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
-|||+.|..+++.|+|++.|.+||+|..+||+|+..+++ .|||+||-|-.+++|++||..||+
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K-----------------sKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK-----------------SKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCc-----------------ccceeEEeccchHHHHHHHHHhCC
Confidence 489999999999999999999999999999999876553 399999999999999999999997
Q ss_pred cccccccceEEEeecccCHH
Q 015730 370 MIMLFFFSAFCLMFVTQTNE 389 (401)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~e 389 (401)
.=+.. -.++-.+.+.|..
T Consensus 127 qWlG~--R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 127 QWLGR--RTIRTNWATRKPS 144 (321)
T ss_pred eeecc--ceeeccccccCcc
Confidence 75443 3455555555543
No 65
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.7e-08 Score=103.00 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=56.7
Q ss_pred HHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEec
Q 015730 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSE 267 (401)
Q Consensus 198 ~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVse 267 (401)
.+-+.+|||||||.+||.+|.|+++ |||+|.+|++|+||..++.|+++|.+||+.+-+|++..
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~ 363 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETG 363 (448)
T ss_pred ccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccc
Confidence 4678899999999999999987775 78999999999999999999999999999997766653
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.62 E-value=9e-08 Score=89.39 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=63.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhcc-CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~f-G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..-+|+..+|....+.++..+|.+| |.|..+|+.|.+.+| ++||||||||+++|.|+-|.+.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTG-----------------NSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTG-----------------NSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccC-----------------CcCceEEEEeccHHHHHHHHHH
Confidence 4468899999999999999999998 788888886543322 2499999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
||+++++.... .|-.|..
T Consensus 112 MNNYLl~e~lL-~c~vmpp 129 (214)
T KOG4208|consen 112 MNNYLLMEHLL-ECHVMPP 129 (214)
T ss_pred hhhhhhhhhee-eeEEeCc
Confidence 99999887533 3333333
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.61 E-value=7.6e-08 Score=98.06 Aligned_cols=70 Identities=27% Similarity=0.315 Sum_probs=60.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhc-cCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~-fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..|++||+|||+|..+++|+++|.. .|+|+.|.++.+. ++| .+|||+|||+++|.++||++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK-------~rGcavVEFk~~E~~qKa~E 104 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGK-------ARGCAVVEFKDPENVQKALE 104 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCC-------cCCceEEEeeCHHHHHHHHH
Confidence 3578999999999999999999975 8999999998864 233 38999999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
.||...+..
T Consensus 105 ~lnk~~~~G 113 (608)
T KOG4212|consen 105 KLNKYEVNG 113 (608)
T ss_pred HhhhccccC
Confidence 999776544
No 68
>smart00361 RRM_1 RNA recognition motif.
Probab=98.61 E-value=1.1e-07 Score=74.29 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=44.7
Q ss_pred HHHHHHHHh----ccCCeeEEE-EecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 302 ~edL~~lFs----~fG~V~~Vr-i~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
+++|+++|+ +||.|.+|. +..++.+.. + ..+|||||+|++.++|.+|++.||+.....
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~--------~-------~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYE--------N-------HKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCC--------C-------CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 468888888 999999995 655543200 0 138999999999999999999999876443
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.60 E-value=1.7e-07 Score=69.61 Aligned_cols=48 Identities=40% Similarity=0.449 Sum_probs=40.0
Q ss_pred HHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 305 L~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
|.++|++||+|..|++... .+++|||+|.+.++|++|++.||+.....
T Consensus 1 L~~~f~~fG~V~~i~~~~~----------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK----------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT----------------------STTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ChHHhCCcccEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6789999999999998632 04899999999999999999999887543
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.59 E-value=7.1e-08 Score=101.00 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=52.0
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccC------------CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEE
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVG------------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG------------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFV 352 (401)
....++|||+|||.++|+++|+++|+.|+ .|..+.+. ..+|||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~afV 228 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAFL 228 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEEE
Confidence 34578999999999999999999999862 33333331 13899999
Q ss_pred EecCHHHHHHHHHHhccccccc
Q 015730 353 EYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 353 EFes~E~A~kAv~~ln~~~~~~ 374 (401)
||.+.|+|.+||+ |++..+..
T Consensus 229 eF~~~e~A~~Al~-l~g~~~~g 249 (509)
T TIGR01642 229 EFRTVEEATFAMA-LDSIIYSN 249 (509)
T ss_pred EeCCHHHHhhhhc-CCCeEeeC
Confidence 9999999999994 88765444
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=9.7e-08 Score=89.35 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=63.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-.+|-|.||-+-++.++|..+|++||.|-.|-|-+++.+. ..+|||||-|....+|++|++.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr-----------------~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTR-----------------QSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccc-----------------cccceeEEEeeecchHHHHHHhh
Confidence 3579999999999999999999999999999996554321 13899999999999999999999
Q ss_pred cccccccccceEEEee
Q 015730 368 HFMIMLFFFSAFCLMF 383 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~ 383 (401)
++.++.. .+|.+.+
T Consensus 76 DG~~ldg--RelrVq~ 89 (256)
T KOG4207|consen 76 DGAVLDG--RELRVQM 89 (256)
T ss_pred cceeecc--ceeeehh
Confidence 9887665 3554443
No 72
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=9.6e-08 Score=99.55 Aligned_cols=69 Identities=29% Similarity=0.341 Sum_probs=59.1
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
...|+|.|||+.+...+|+.+|+.||.|..|.| |+ +.+|.+ +|||||.|....+|.+|++.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~-------------k~dgkl---cGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PR-------------KKDGKL---CGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEc--cc-------------CCCCCc---cceEEEEEeeHHHHHHHHHhc
Confidence 567999999999999999999999999999988 32 122222 799999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 179 N~~~i~g 185 (678)
T KOG0127|consen 179 NGNKIDG 185 (678)
T ss_pred cCceecC
Confidence 9887766
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=7.5e-08 Score=88.77 Aligned_cols=65 Identities=26% Similarity=0.285 Sum_probs=55.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++-+.+|+.+|.+||.|..|.|.-+ . +.-.||||||++.-+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r------------~--------g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR------------P--------GPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC------------C--------CCCCeeEEEecCccchhhhhhc
Confidence 4689999999999999999999999999999988321 1 1257999999999999999997
Q ss_pred hcccc
Q 015730 367 LHFMI 371 (401)
Q Consensus 367 ln~~~ 371 (401)
-++.-
T Consensus 65 RdGYd 69 (241)
T KOG0105|consen 65 RDGYD 69 (241)
T ss_pred ccccc
Confidence 76543
No 74
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.5e-07 Score=90.70 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=61.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
...|+|.-||.++|.|+|+.+|+..|+|++++++|++.+|- .-||+||.|-+++||++||..|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-----------------SLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccc-----------------ccccceeeecChHHHHHHHhhh
Confidence 34588888999999999999999999999999999875432 2689999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+.++-.
T Consensus 104 NGLrLQ~ 110 (360)
T KOG0145|consen 104 NGLRLQN 110 (360)
T ss_pred cceeecc
Confidence 9887655
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2.3e-07 Score=99.86 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=69.0
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
.+.+|||+|++|+..++++||..+|+.||+|.+|.|+- ++|||||++..+.+|++|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 45689999999999999999999999999999998863 3899999999999999999
Q ss_pred HHhcccccccccceEEEeecccCHH
Q 015730 365 SHLHFMIMLFFFSAFCLMFVTQTNE 389 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~~~~e 389 (401)
..|++..+..+...+.|.....-++
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHHhcccccceeeEEeeeccCCcch
Confidence 9999887777555556655444333
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.7e-07 Score=100.12 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=60.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
...|.|+|||+.++..+|+.+|..||.|.+||| |+-. ++ ...+|||||+|-+..+|.+|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRl--PKK~----------~k-----~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRL--PKKI----------GK-----GAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeecc--chhh----------cc-----hhhccceeeeccCcHHHHHHHHhh
Confidence 346999999999999999999999999999998 3211 11 134899999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
..+-++. .+++..|.
T Consensus 676 ~STHlyG--RrLVLEwA 690 (725)
T KOG0110|consen 676 GSTHLYG--RRLVLEWA 690 (725)
T ss_pred cccceec--hhhheehh
Confidence 8444333 34554443
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.40 E-value=3.3e-07 Score=84.28 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=68.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEE-EEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~V-ri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
...|||+||...+++.-|-.+|+.||.+.+. .++++.+++. .+||+||.|++.|.+.+|+..
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~-----------------~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN-----------------PKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC-----------------CCCCeEEechhHHHHHHHHHH
Confidence 4689999999999999999999999998653 4555433221 288999999999999999999
Q ss_pred hcccccccccceEEEeecccCHHHH
Q 015730 367 LHFMIMLFFFSAFCLMFVTQTNEIR 391 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~~e~R 391 (401)
+|+..++.-.......++..++.+|
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg~~ 183 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKGER 183 (203)
T ss_pred hccchhcCCceEEEEEEecCCCccc
Confidence 9999998865555556666666654
No 78
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.9e-07 Score=88.17 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=60.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.|||||++|-+++++.-|...|-.||.|+.|.+-.+.. +.| ++||+||||+-.|+|..|+..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye----------sqk-------HRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE----------SQK-------HRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchh----------ccc-------ccceeEEEeeccchhHHHhhc
Confidence 578999999999999999999999999999999844322 222 489999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 72 MnesEL~G 79 (298)
T KOG0111|consen 72 MNESELFG 79 (298)
T ss_pred Cchhhhcc
Confidence 99876554
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.36 E-value=2.2e-07 Score=92.72 Aligned_cols=130 Identities=18% Similarity=0.332 Sum_probs=84.3
Q ss_pred hcccccccCCCcCcCHHHHHhh---ccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEeccccccccCCCCC
Q 015730 203 NQVEYYFSDLNLATTDHLIRFI---LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLT 279 (401)
Q Consensus 203 ~QvEfYFSd~NL~~D~fL~~~i---~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~ 279 (401)
+.|.+||++.-...|..+++-. .....|||..+.-.... .+|.... +. -||..|.-+..++
T Consensus 21 e~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~-------------~vl~~~~-h~--~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 21 ESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVD-------------AVLNART-HK--LDGRSVEPKRAVS 84 (311)
T ss_pred HHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchh-------------eeecccc-cc--cCCccccceeccC
Confidence 3455788877777776555532 12355666554333322 2222211 11 1344444444444
Q ss_pred cchhhhh----hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec
Q 015730 280 ESDLEEL----QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (401)
Q Consensus 280 e~~~~e~----~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (401)
..+.... ..+.|||++|+.++++++++++|.+||.|..+-++++..+.+ .+||+||.|+
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~-----------------~rgFgfv~~~ 147 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR-----------------PRGFGFVTFD 147 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc-----------------cccceeeEec
Confidence 3322221 245899999999999999999999999999999988765332 3899999999
Q ss_pred CHHHHHHHHH
Q 015730 356 SVELAEKAVS 365 (401)
Q Consensus 356 s~E~A~kAv~ 365 (401)
+++++.+++.
T Consensus 148 ~e~sVdkv~~ 157 (311)
T KOG4205|consen 148 SEDSVDKVTL 157 (311)
T ss_pred cccccceecc
Confidence 9999988876
No 80
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=2.7e-07 Score=90.05 Aligned_cols=61 Identities=28% Similarity=0.323 Sum_probs=56.4
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.|||+|||..+++.+|+.+|++||+|..+.|+ |.|+||..|++..|+.||..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999986 67999999999999999999998
Q ss_pred cccccc
Q 015730 370 MIMLFF 375 (401)
Q Consensus 370 ~~~~~~ 375 (401)
..+...
T Consensus 59 YtLhg~ 64 (346)
T KOG0109|consen 59 YTLHGV 64 (346)
T ss_pred ceecce
Confidence 877663
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=6.8e-07 Score=89.05 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=58.1
Q ss_pred hhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 284 ~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
++...+||||++|-..+++.+|++.|.+||+|.+|++.. .++||||+|.|+++|++|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHH
Confidence 344578999999988999999999999999999999852 178999999999999999
Q ss_pred HHHhccccccc
Q 015730 364 VSHLHFMIMLF 374 (401)
Q Consensus 364 v~~ln~~~~~~ 374 (401)
.++.-+.++..
T Consensus 281 ae~~~n~lvI~ 291 (377)
T KOG0153|consen 281 AEKSFNKLVIN 291 (377)
T ss_pred HHhhcceeeec
Confidence 99876544444
No 82
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=85.04 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=61.4
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|+|+||...++.++|++.|.+||.|..+.|+ |+|+||.|+-.|+|..|+++|
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhcc
Confidence 5689999999999999999999999999999885 789999999999999999999
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
++... .+++.-+.+.+
T Consensus 133 ~~~~~--~gk~m~vq~st 148 (346)
T KOG0109|consen 133 DNTEF--QGKRMHVQLST 148 (346)
T ss_pred ccccc--ccceeeeeeec
Confidence 98874 44566555443
No 83
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.3e-07 Score=95.51 Aligned_cols=61 Identities=25% Similarity=0.474 Sum_probs=54.7
Q ss_pred HHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcC
Q 015730 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (401)
Q Consensus 198 ~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S 260 (401)
+..+.+|||||||.+||..|.||++++.+ +|||++++|..|.|...+..|..++..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~k--aGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFKK--AGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhhh--cccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 46777899999999999999999999654 69999999999999999999998888888775
No 84
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=3.6e-06 Score=86.14 Aligned_cols=117 Identities=27% Similarity=0.300 Sum_probs=78.2
Q ss_pred ccchhhHHhhhcCHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCee
Q 015730 237 VASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVK 316 (401)
Q Consensus 237 i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~ 316 (401)
+.-|..-+...+.++++...|.....+.|...-.+-.|..++.+ .. .....+||+|++.+.+.+.|..+|+.||.|.
T Consensus 119 FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~--~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 119 FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK--KRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh--hhhhhhheeccccccchHHHHHhhcccCcce
Confidence 33444333333333333333333445555543333333334433 21 2356899999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 317 TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 317 ~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
.+.++.... + .++||+||+|++.++|.+|+..|++.....
T Consensus 196 s~~v~~~~~-----------g-------~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 196 SVAVMRDSI-----------G-------KSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred EEEEeecCC-----------C-------CCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 999975421 1 138999999999999999999999888653
No 85
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.18 E-value=2.2e-06 Score=89.56 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=58.0
Q ss_pred eeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccc
Q 015730 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFM 370 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~ 370 (401)
|||+||..++++++|+.+|+.||.|..|.+.++-.+|. .|||+||+|.+.++|.+|+..||+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~-----------------skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR-----------------SKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccccccc-----------------ccCcceEEEecHHHHHHHHHHhccc
Confidence 99999999999999999999999999999876532322 3899999999999999999999984
Q ss_pred cccc
Q 015730 371 IMLF 374 (401)
Q Consensus 371 ~~~~ 374 (401)
.+-.
T Consensus 344 elAG 347 (549)
T KOG0147|consen 344 ELAG 347 (549)
T ss_pred eecC
Confidence 4433
No 86
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=2e-06 Score=86.31 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=60.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-|.|||+.+.++.-++.|+..|..||.|++|.|--+--++ .+||||||||+-.|.|+-|++.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~-----------------kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccc-----------------cccceEEEEEeCcHHHHHHHHHh
Confidence 4789999999999999999999999999999986542221 25999999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+.++..
T Consensus 176 Ng~mlGG 182 (544)
T KOG0124|consen 176 NGQMLGG 182 (544)
T ss_pred ccccccC
Confidence 9887655
No 87
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.10 E-value=7e-06 Score=88.06 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=58.0
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.|||+||++++|.++|+..|++.|.|.+|.|..-++ .+ .+ +..+|||||||.+.|+|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd--------~~-~k-----~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD--------PA-NK-----YLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc--------cc-cc-----ccccceeEEEecCHHHHHHHHHHhcC
Confidence 399999999999999999999999999999854221 01 12 23589999999999999999999986
Q ss_pred ccccc
Q 015730 370 MIMLF 374 (401)
Q Consensus 370 ~~~~~ 374 (401)
..+-.
T Consensus 583 tvldG 587 (725)
T KOG0110|consen 583 TVLDG 587 (725)
T ss_pred ceecC
Confidence 65544
No 88
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.8e-06 Score=84.95 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
..|||-.|..-+|.++|+-|||.||.|.++.++++..+|.+ -.||||||++.+++++|+-.|+
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhhhc
Confidence 45777788777899999999999999999999988654432 4589999999999999999998
Q ss_pred cccccc
Q 015730 369 FMIMLF 374 (401)
Q Consensus 369 ~~~~~~ 374 (401)
+.++-.
T Consensus 303 NvLIDD 308 (479)
T KOG0415|consen 303 NVLIDD 308 (479)
T ss_pred ceeecc
Confidence 776554
No 89
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=5.4e-06 Score=83.24 Aligned_cols=65 Identities=17% Similarity=0.375 Sum_probs=56.3
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
..|||..+..|.+++||+.+|+.||+|..+.+.+..+. | ++|||+||||++..+...||..||
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~--------~---------~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG--------R---------GHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC--------C---------CccceeeEEeccccchHHHhhhcc
Confidence 46999999999999999999999999999999875321 1 359999999999999999999887
Q ss_pred cc
Q 015730 369 FM 370 (401)
Q Consensus 369 ~~ 370 (401)
-.
T Consensus 274 lF 275 (544)
T KOG0124|consen 274 LF 275 (544)
T ss_pred hh
Confidence 43
No 90
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.07 E-value=7.8e-06 Score=77.45 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=57.8
Q ss_pred hhheeccCCCCcccHHHHHH----HHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~----lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..||||.||++-...++|++ +|++||+|..|.++... | -+|=|||.|++.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-------------K-------mRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-------------K-------MRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-------------C-------ccCceEEEecChhHHHHH
Confidence 34999999999999999888 99999999999987431 1 278899999999999999
Q ss_pred HHHhccccccc
Q 015730 364 VSHLHFMIMLF 374 (401)
Q Consensus 364 v~~ln~~~~~~ 374 (401)
++.|++.....
T Consensus 69 ~r~l~gfpFyg 79 (221)
T KOG4206|consen 69 LRALQGFPFYG 79 (221)
T ss_pred HHHhcCCcccC
Confidence 99999887555
No 91
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=3.9e-06 Score=81.34 Aligned_cols=81 Identities=12% Similarity=0.251 Sum_probs=67.4
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..+.|.|||--||.+....+|..+|-.||.|.+.++.-++.++- .|.|+||.|++..+|+.||
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHHH
Confidence 34689999999999999999999999999999998877765432 2889999999999999999
Q ss_pred HHhcccccccccceEEEeec
Q 015730 365 SHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~ 384 (401)
..||+.-+.++ ++-+.+|
T Consensus 345 qAMNGFQIGMK--RLKVQLK 362 (371)
T KOG0146|consen 345 QAMNGFQIGMK--RLKVQLK 362 (371)
T ss_pred HHhcchhhhhh--hhhhhhc
Confidence 99998876663 4444444
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.88 E-value=4.2e-05 Score=64.99 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=39.4
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|.+.++..+++.++|+++|+.||.|..|.+.+- ...|||-|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 57889999999999999999999999999987421 3369999999999999999886
Q ss_pred cc
Q 015730 369 FM 370 (401)
Q Consensus 369 ~~ 370 (401)
..
T Consensus 59 ~~ 60 (105)
T PF08777_consen 59 EA 60 (105)
T ss_dssp HT
T ss_pred hc
Confidence 55
No 93
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.87 E-value=1e-05 Score=83.75 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=51.4
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|||+|||.+++.++|+++|+.||.|+..+|..-. |..+ +.+||||+|++.++++.||..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~----------~~~~-------~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS----------PGGK-------NPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec----------cCCC-------cCceEEEEEeecchhhhhhhcC
Confidence 4569999999999999999999999999988875311 1111 1379999999999999999865
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=8.8e-06 Score=77.28 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=58.8
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.|||++||+.+.+.+|+++|.+||+|..|.|. .||+||+|++.-+|..||..|++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999872 67899999999999999999999
Q ss_pred cccccccceEEEee
Q 015730 370 MIMLFFFSAFCLMF 383 (401)
Q Consensus 370 ~~~~~~~~~~~~~~ 383 (401)
.+++... ..+++
T Consensus 58 ~~l~~e~--~vve~ 69 (216)
T KOG0106|consen 58 KELCGER--LVVEH 69 (216)
T ss_pred ceeccee--eeeec
Confidence 8877753 44444
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=1.1e-05 Score=84.60 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=57.2
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
....++|+|-|||.+++.++|.++|+.||+|+.||.-+ ..+|.+||||-+.-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 35678999999999999999999999999999987631 12789999999999999999
Q ss_pred HHhccccc
Q 015730 365 SHLHFMIM 372 (401)
Q Consensus 365 ~~ln~~~~ 372 (401)
++|+...+
T Consensus 130 k~l~~~~~ 137 (549)
T KOG4660|consen 130 KALNRREI 137 (549)
T ss_pred HHHHHHHh
Confidence 99986553
No 96
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.84 E-value=1.6e-05 Score=81.55 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=56.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
++|+|+|+|||.++|++.|++-|..||.|..+.|+... | .|| +|.|.+.++|++||+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-------------k-------skG--VVrF~s~edAEra~a~ 592 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-------------K-------SKG--VVRFFSPEDAERACAL 592 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-------------C-------ccc--eEEecCHHHHHHHHHH
Confidence 47889999999999999999999999999999885321 1 144 8999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 593 Mngs~l~G 600 (608)
T KOG4212|consen 593 MNGSRLDG 600 (608)
T ss_pred hccCcccC
Confidence 99877655
No 97
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.80 E-value=1.7e-05 Score=76.27 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=61.8
Q ss_pred hhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 283 ~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
..+.+.+.|||+|+...+|.++++..|+.||.|..|.|..++..+ ..|||+||||.+.+.+++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-----------------~~k~~~yvef~~~~~~~~ 158 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-----------------HPKGFAYVEFSSYELVEE 158 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-----------------CcceeEEEecccHhhhHH
Confidence 456678999999999999999999999999999999987654321 138999999999999999
Q ss_pred HHHHhccccccc
Q 015730 363 AVSHLHFMIMLF 374 (401)
Q Consensus 363 Av~~ln~~~~~~ 374 (401)
|+. ||+..+-.
T Consensus 159 ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 159 AYK-LDGSEIPG 169 (231)
T ss_pred Hhh-cCCccccc
Confidence 999 77655433
No 98
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.78 E-value=1.7e-05 Score=79.36 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=55.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.+.|||++|.+++++|.|+++|+.||+|..+.++++..+++ .+||+||+|++.+....++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~r-----------------srgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGR-----------------SRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCC-----------------cccccceecCCCcchheeecc
Confidence 478999999999999999999999999999999988765432 289999999999888888775
Q ss_pred h
Q 015730 367 L 367 (401)
Q Consensus 367 l 367 (401)
.
T Consensus 68 ~ 68 (311)
T KOG4205|consen 68 R 68 (311)
T ss_pred c
Confidence 4
No 99
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.66 E-value=0.00012 Score=70.90 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=57.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
...|+|.||+..++.+||+++|..||.++.+-|-+++. +. ..|+|-|.|+..++|++||+.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~-------s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GR-------SLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CC-------CCccceeeecchHhHHHHHHHh
Confidence 35799999999999999999999999999998866532 22 2688999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++ +.+.
T Consensus 145 ~g-v~ld 150 (243)
T KOG0533|consen 145 NG-VALD 150 (243)
T ss_pred cC-cccC
Confidence 98 4444
No 100
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.65 E-value=0.00024 Score=59.64 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred hheeccCCCCcccHHHHHHHHhc--cCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.||.++|||...|.++|.+++.. .|...-+-+. .|.+.+ .|.|||||-|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP----------iDf~~~-------~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP----------IDFKNK-------CNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee----------eeccCC-------CceEEEEEEcCCHHHHHHHHHH
Confidence 58999999999999999988876 3555555552 232322 3689999999999999999999
Q ss_pred hccccccccc-ceEEEe
Q 015730 367 LHFMIMLFFF-SAFCLM 382 (401)
Q Consensus 367 ln~~~~~~~~-~~~~~~ 382 (401)
+++..-..+. ...|.+
T Consensus 65 f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 65 FNGKKWPNFNSKKVCEI 81 (97)
T ss_pred HcCCccccCCCCcEEEE
Confidence 9988765432 334433
No 101
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.65 E-value=7e-05 Score=78.91 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=57.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..|.|+|.+|...+---+|+.||++||+|.-+.++... |+ . +.+.|+||++.+.++|.+||+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----------Rs---P----GaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----------RS---P----GARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----------CC---C----CcceeEEEEecchHHHHHHHHH
Confidence 35789999999888889999999999999988886321 21 1 2378999999999999999998
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|.-+.+..
T Consensus 467 LHrTELHG 474 (940)
T KOG4661|consen 467 LHRTELHG 474 (940)
T ss_pred hhhhhhcc
Confidence 86554443
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.63 E-value=0.00016 Score=75.18 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=61.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeE-EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.-.|-..+||+.+|++||.++|+..=-|.. |.+ + .+.|.. ..|-|||+|++.|.|++|+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l--~--------~d~rgR--------~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL--P--------MDQRGR--------PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceee--e--------ccCCCC--------cccceEEEecCHHHHHHHHHH
Confidence 457888999999999999999997543333 222 2 222322 267799999999999999987
Q ss_pred hcccccccccceEEEeecccCHHHHH
Q 015730 367 LHFMIMLFFFSAFCLMFVTQTNEIRT 392 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~~e~R~ 392 (401)
-++.+ .-+|+..|+....|.+.
T Consensus 165 hre~i----GhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 165 HRENI----GHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHHhh----ccceEEeehhHHHHHHh
Confidence 76555 56888888887777654
No 103
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=4.4e-05 Score=72.33 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=58.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.|||||.||-..+++|-|.++|-+-|.|..|.|...+ ..+ .| ||||+|+++-+..-|++-+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-----------d~~-------~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-----------DQE-------QK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-----------cCC-------Cc-eeeeecccccchhhhhhhc
Confidence 6899999999999999999999999999999874322 121 25 9999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+.....
T Consensus 70 ng~~l~~ 76 (267)
T KOG4454|consen 70 NGDDLEE 76 (267)
T ss_pred ccchhcc
Confidence 8877665
No 104
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.60 E-value=7.1e-05 Score=80.54 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=66.7
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.....|||+||+..++++.|...|+.||.|..|+|+.|++-.- |. ..+.|+||-|.+..+|++|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE------k~--------r~r~cgfvafmnR~D~era~k 237 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE------KR--------RERNCGFVAFMNRADAERALK 237 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh------hc--------cccccceeeehhhhhHHHHHH
Confidence 3456899999999999999999999999999999999875211 11 126799999999999999999
Q ss_pred HhcccccccccceEE
Q 015730 366 HLHFMIMLFFFSAFC 380 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~ 380 (401)
+|++.+++.....|.
T Consensus 238 ~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 238 ELQGIIVMEYEMKLG 252 (877)
T ss_pred Hhcceeeeeeeeeec
Confidence 999998887444444
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.51 E-value=0.00019 Score=74.62 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=56.8
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
.-|-+.+||+.+|++||.++|+-++ |+++.+.| .++ + +.|=|||||+++|++++|++.-.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~G----------r-------~sGeA~Ve~~seedv~~AlkkdR 70 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNG----------R-------PSGEAYVEFTSEEDVEKALKKDR 70 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCC----------C-------cCcceEEEeechHHHHHHHHhhH
Confidence 3566789999999999999999986 66654432 222 1 26779999999999999998543
Q ss_pred ccccccccceEEEeecccCHH
Q 015730 369 FMIMLFFFSAFCLMFVTQTNE 389 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~e 389 (401)
..+ ..+|+.+|...-+|
T Consensus 71 ~~m----g~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 71 ESM----GHRYIEVFTAGGAE 87 (510)
T ss_pred HHh----CCceEEEEccCCcc
Confidence 322 46788887764444
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.49 E-value=0.00027 Score=70.86 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=55.7
Q ss_pred hhhhhhhheeccCCCCcccHHHHHHHHhccCCeeE--------EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEe
Q 015730 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (401)
Q Consensus 283 ~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEF 354 (401)
.+......|||.|||.|+|.+++.++|++||-|.. |.|-+++ .++ -||=|.|+|
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-----------~G~-------lKGDaLc~y 190 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-----------QGK-------LKGDALCCY 190 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-----------CCC-------ccCceEEEe
Confidence 33445667999999999999999999999997632 2222211 111 278899999
Q ss_pred cCHHHHHHHHHHhccccccc
Q 015730 355 ESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 355 es~E~A~kAv~~ln~~~~~~ 374 (401)
-.+|+.+-|++-|++.....
T Consensus 191 ~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 191 IKRESVELAIKILDEDELRG 210 (382)
T ss_pred ecccHHHHHHHHhCcccccC
Confidence 99999999999998776554
No 107
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.34 E-value=0.00024 Score=74.70 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=64.1
Q ss_pred hhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 283 ~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
.++.+.||||+.-+....+.-+|+++|+.+|+|..|+++.++.+.+ .||.|||||.+.++...
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r-----------------skgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR-----------------SKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh-----------------hcceeEEEEecccchhh
Confidence 3567889999999999999999999999999999999998765332 28999999999999998
Q ss_pred HHHHhcccccccc
Q 015730 363 AVSHLHFMIMLFF 375 (401)
Q Consensus 363 Av~~ln~~~~~~~ 375 (401)
|| .|++...+..
T Consensus 237 ai-aLsGqrllg~ 248 (549)
T KOG0147|consen 237 AI-ALSGQRLLGV 248 (549)
T ss_pred Hh-hhcCCcccCc
Confidence 88 5888876663
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00061 Score=50.85 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.4
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
+.|.|.|++.+.. +.|.+.|..||+|..+.+- . ...+.||+|+++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 5788999986654 5566699999999998872 0 1457999999999999985
No 109
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.19 E-value=0.00096 Score=63.65 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.|||||.+||.|+..-+|-.+|..|---+..-|.+. + |.++ . -+.+|||.|.+..+|+.|++.|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T---s-------k~~~----~--~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT---S-------KGDQ----V--CKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec---c-------CCCc----c--ccceEEEEecchHHHHHHHHHh
Confidence 689999999999999999999998854444444321 1 1111 1 1679999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+.+.--
T Consensus 98 NGvrFDp 104 (284)
T KOG1457|consen 98 NGVRFDP 104 (284)
T ss_pred cCeeecc
Confidence 9876443
No 110
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.17 E-value=0.00056 Score=66.18 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
++-.||.+.|-.+++.+-|.+.|.+|=.....++++++ |.+|+ |||+||-|.+.+++..|+++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk----------RTgKS-------kgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK----------RTGKS-------KGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc----------ccccc-------ccceeeeecCHHHHHHHHHh
Confidence 35578999999999999999999999888888887764 44443 89999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++.-+..
T Consensus 252 m~gkyVgs 259 (290)
T KOG0226|consen 252 MNGKYVGS 259 (290)
T ss_pred hccccccc
Confidence 99876655
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.99 E-value=0.00096 Score=63.45 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=93.3
Q ss_pred HHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccch-hhHHhhhc-----CHHHHHHhhhcCcce-----EEe
Q 015730 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKL-----VVS 266 (401)
Q Consensus 198 ~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sF-kKvK~lt~-----d~e~I~eALk~S~~L-----EVs 266 (401)
++.++++|.-.||.-.=.-|--.++..++.++-||.++-+.+= .-+++|.. ..-.|..|..+|..+ ++.
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 3677777777888766444544455456777888877664332 22333322 112333344444322 122
Q ss_pred ccccc-----cccC-CCCCcc----------------hhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCC
Q 015730 267 EDGKK-----IKRQ-NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (401)
Q Consensus 267 edg~k-----VRRk-~Pl~e~----------------~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~ 324 (401)
+.+.+ +++. .+.... +.......++++.|||..++.+.|..+|.+|+-.+.||++..+
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 21111 1100 111000 1112345789999999999999999999999999999997421
Q ss_pred CCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccc
Q 015730 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIML 373 (401)
Q Consensus 325 ~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~ 373 (401)
++.|||||.+...|.-|...+.+-..-
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceec
Confidence 678999999999888888888665443
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.91 E-value=0.0012 Score=63.01 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=51.6
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
||||-||-.++|+++|+.+|+.|--...++|+- | +....|||+|++.|.|..|+..|.+
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~------------~---------~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFHILKIRA------------R---------GGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCceEEEEec------------C---------CCcceEeecHHHHHHHHHHHHHhhc
Confidence 799999999999999999999998777777631 1 1256799999999999999999876
Q ss_pred ccc
Q 015730 370 MIM 372 (401)
Q Consensus 370 ~~~ 372 (401)
..+
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 654
No 113
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.85 E-value=0.0038 Score=51.23 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=43.4
Q ss_pred hheeccCCCCcccHH----HHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 289 rtVyV~nLP~d~t~e----dL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..|||.|||.+.+.. -|+.++.-|| +|..|. .+.|+|-|.+.|.|.+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 368999999987754 4666777776 565552 45799999999999999
Q ss_pred HHHhcccccccccceEEEeec
Q 015730 364 VSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~~ 384 (401)
.+.|+++.+.. ..|.+.+.
T Consensus 56 ~KRmegEdVfG--~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFG--NKISVSFS 74 (90)
T ss_dssp HHHHTT--SSS--S--EEESS
T ss_pred HHhhccccccc--ceEEEEEc
Confidence 99998887655 34555554
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.85 E-value=0.00048 Score=65.59 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=54.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+.++|.|+...+.+++|++.|..+|.+....++ .+++||+|++.++|.+|+..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcchh
Confidence 45678899999999999999999999998555442 56799999999999999999
Q ss_pred hcccccccc
Q 015730 367 LHFMIMLFF 375 (401)
Q Consensus 367 ln~~~~~~~ 375 (401)
|++..+...
T Consensus 153 l~~~~~~~~ 161 (216)
T KOG0106|consen 153 LDGKKLNGR 161 (216)
T ss_pred ccchhhcCc
Confidence 998876653
No 115
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.39 E-value=0.016 Score=58.46 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=81.0
Q ss_pred CcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc----ceEEecccc------ccccC----C--
Q 015730 213 NLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS----KLVVSEDGK------KIKRQ----N-- 276 (401)
Q Consensus 213 NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~----~LEVsedg~------kVRRk----~-- 276 (401)
+..+.++..+ +.++.+|-+.-+-+|.|-|-.+. ++++..|.++. .|.|..... .+.++ .
T Consensus 164 d~~t~epk~K-lYrd~~G~lKGDaLc~y~K~ESV----eLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~ 238 (382)
T KOG1548|consen 164 DPQTGEPKVK-LYRDNQGKLKGDALCCYIKRESV----ELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKD 238 (382)
T ss_pred cCCCCCeeEE-EEecCCCCccCceEEEeecccHH----HHHHHHhCcccccCcEEEEehhhhhhccCcCccccccccccc
Confidence 3333344444 34567788888888888766544 44555554433 455553210 01111 0
Q ss_pred ---------C-C---Ccc--hhhhhhhhheeccCCC--Cc--cc-------HHHHHHHHhccCCeeEEEEecCCCCCCCC
Q 015730 277 ---------P-L---TES--DLEELQSRIVVAENLP--ED--HC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGA 330 (401)
Q Consensus 277 ---------P-l---~e~--~~~e~~~rtVyV~nLP--~d--~t-------~edL~~lFs~fG~V~~Vri~~p~~~~~~~ 330 (401)
. + ++. .......+||+++|+= .+ .+ .++|++-.++||.|.+|.|. ++
T Consensus 239 ~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~------ 311 (382)
T KOG1548|consen 239 KKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR------ 311 (382)
T ss_pred HHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc------
Confidence 0 0 001 1122346789999983 21 12 36677788999999999874 32
Q ss_pred CCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccc
Q 015730 331 SSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIM 372 (401)
Q Consensus 331 p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~ 372 (401)
.+.|.+-|.|.+.++|..||+.|++.-.
T Consensus 312 --------------hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 312 --------------HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred --------------CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 1378899999999999999999987643
No 116
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.28 E-value=0.013 Score=54.68 Aligned_cols=68 Identities=22% Similarity=0.057 Sum_probs=57.0
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
-.|+|.+||...++++|+..+.+-|.|....+-+ .|+++|||...|+++.||+.|.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r------------------------Dg~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR------------------------DGVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec------------------------ccceeeeeeehhhHHHHHHhhc
Confidence 3588999999999999999999999998887743 4578999999999999999998
Q ss_pred ccccccccceEE
Q 015730 369 FMIMLFFFSAFC 380 (401)
Q Consensus 369 ~~~~~~~~~~~~ 380 (401)
+.+.......++
T Consensus 172 ~~~~~seGe~~y 183 (241)
T KOG0105|consen 172 DQKFRSEGETAY 183 (241)
T ss_pred cccccCcCcEee
Confidence 887665433333
No 117
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0074 Score=64.10 Aligned_cols=69 Identities=28% Similarity=0.259 Sum_probs=51.1
Q ss_pred hhheeccCCCCcc--cH----HHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 288 SRIVVAENLPEDH--CH----QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 288 ~rtVyV~nLP~d~--t~----edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
...|+|.|+|.-- -. .-|.++|+++|+|...-+-.+. - .+.+||.|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e----------~--------ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE----------E--------GGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc----------c--------CCeeeEEEEEecChhhHH
Confidence 4567888888532 22 3467899999998877662211 1 123899999999999999
Q ss_pred HHHHHhccccccc
Q 015730 362 KAVSHLHFMIMLF 374 (401)
Q Consensus 362 kAv~~ln~~~~~~ 374 (401)
+||+.||+..+..
T Consensus 120 ~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 120 KAVKSLNGKRLDK 132 (698)
T ss_pred HHHHhcccceecc
Confidence 9999999987665
No 118
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.83 E-value=0.013 Score=59.00 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=51.5
Q ss_pred hhhhheeccCCCCcccHHH------HHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcce--EEEEecCH
Q 015730 286 LQSRIVVAENLPEDHCHQN------LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH--AFVEYESV 357 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~ed------L~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~--AFVEFes~ 357 (401)
++...|||-+|+..+-.|+ -.++|++||+|..|-+-+-. ++.+. ..++ +||+|.+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~s~ns----------t~~h~gvYITy~~k 175 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------SSLNS----------TASHAGVYITYSTK 175 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------ccccc----------ccccceEEEEecch
Confidence 3455789999987665554 36899999999999884321 11111 1122 59999999
Q ss_pred HHHHHHHHHhccccccc
Q 015730 358 ELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 358 E~A~kAv~~ln~~~~~~ 374 (401)
|+|.+||.+.++..+..
T Consensus 176 edAarcIa~vDgs~~DG 192 (480)
T COG5175 176 EDAARCIAEVDGSLLDG 192 (480)
T ss_pred HHHHHHHHHhccccccC
Confidence 99999999988765444
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.81 E-value=0.02 Score=58.88 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=59.4
Q ss_pred hheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..|.|.||.+ .+|.+-|--+|+.||.|.+|.|++.+ |..|.|.|.+...|+-|++.|
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~hL 355 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEHL 355 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHHh
Confidence 5677888865 47999999999999999999998632 567999999999999999999
Q ss_pred cccccccccceEEEee
Q 015730 368 HFMIMLFFFSAFCLMF 383 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~ 383 (401)
++.+++. +.+++.+
T Consensus 356 ~g~~l~g--k~lrvt~ 369 (492)
T KOG1190|consen 356 EGHKLYG--KKLRVTL 369 (492)
T ss_pred hcceecC--ceEEEee
Confidence 9888776 4566555
No 120
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.66 E-value=0.0037 Score=60.64 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=57.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.-.||+++||..+....|++||+.||.|-+|.+-....+.. -...|.++.....| .-+.|||.+...|.++...|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~--~~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKR--AARKRKGGNYKKLY---SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHH--HHHhhcCCCccccc---hhHHHHHHHHHHHHHHHHHh
Confidence 34799999999999999999999999999998853322100 00001111111111 11578999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 149 nn~~Igg 155 (278)
T KOG3152|consen 149 NNTPIGG 155 (278)
T ss_pred CCCccCC
Confidence 9887665
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.016 Score=60.98 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=50.8
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcc---eEEEEecCHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAEK 362 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG---~AFVEFes~E~A~k 362 (401)
.-.+.|||++||.+++++.|...|..||.+..=.=.+.+. + + .+-.|| |+|+-|+++.+...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~---------~-~-----~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANS---------R-G-----RAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccc---------c-c-----cCCCCCcccEEEEEecchHHHHH
Confidence 3478999999999999999999999999875433211111 1 1 122356 99999999999888
Q ss_pred HHHHhcc
Q 015730 363 AVSHLHF 369 (401)
Q Consensus 363 Av~~ln~ 369 (401)
-+..+..
T Consensus 322 Ll~aC~~ 328 (520)
T KOG0129|consen 322 LLSACSE 328 (520)
T ss_pred HHHHHhh
Confidence 8877643
No 122
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.58 E-value=0.08 Score=55.78 Aligned_cols=6 Identities=0% Similarity=0.146 Sum_probs=2.3
Q ss_pred HHHHHh
Q 015730 197 SIQKVL 202 (401)
Q Consensus 197 ~~~kI~ 202 (401)
++..|+
T Consensus 498 LmaqIR 503 (569)
T KOG3671|consen 498 LMAQIR 503 (569)
T ss_pred HHHHHH
Confidence 333443
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.40 E-value=0.012 Score=62.25 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=59.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
...|||++||...+...++++.+.||.+...+++.+..++ .+|||||.||.+......|++.|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g-----------------~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG-----------------NSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc-----------------cccceeeeeeeCCcchhhhhccc
Confidence 4579999999999999999999999999999887543221 35999999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 352 nGm~lgd 358 (500)
T KOG0120|consen 352 NGMQLGD 358 (500)
T ss_pred chhhhcC
Confidence 8876654
No 124
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.08 E-value=0.044 Score=49.26 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=46.6
Q ss_pred hhhheeccCCCCcc----cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDH----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~----t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
.-.||+|..|..++ +...|....+.||.|.+|.++- +-.|+|.|++..+|=+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SAC~ 140 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSACK 140 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHHHH
Confidence 34688887766654 3445666678999999999861 4579999999999999
Q ss_pred HHHHhccc
Q 015730 363 AVSHLHFM 370 (401)
Q Consensus 363 Av~~ln~~ 370 (401)
||..+...
T Consensus 141 Av~Af~s~ 148 (166)
T PF15023_consen 141 AVSAFQSR 148 (166)
T ss_pred HHHhhcCC
Confidence 99998644
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.80 E-value=0.015 Score=57.81 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=50.4
Q ss_pred hhhee-ccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVy-V~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++| |+||+.+++.++|...|..+|.|..||+.-...+ +. -+|||||+|.+.+++.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s----------~~-------~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEES----------GD-------SKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCc----------cc-------hhhhhhhhhhhchhHHHHhhc
Confidence 34555 9999999999999999999999999998432221 11 289999999999999888875
No 126
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.78 E-value=0.034 Score=56.26 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=56.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..-||||.+++..+|.++|.++|.+||.|.. ++.+++.-+..-+.+++ -..||-|.|.|++.-.|+.||.-
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~kPki~~y~dkeT----~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTGKPKIKIYTDKET----GAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceecc-----CCCCCCcchhccccccc----cCcCCceeeeecChhhhhhhhhh
Confidence 4569999999999999999999999998753 22222211111111122 13489999999999999999998
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
++....+.
T Consensus 136 ~agkdf~g 143 (351)
T KOG1995|consen 136 FAGKDFCG 143 (351)
T ss_pred hccccccC
Confidence 87666554
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.78 E-value=0.056 Score=58.89 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred heeccCCCCcccHHHHHHHHhccCCe-eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
.|-+.|+|++++.+||.++|..|-.+ .+|++++.. +|+ ..|-|-|-|++.|+|..|+..|+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd---------------~G~---pTGe~mvAfes~~eAr~A~~dl~ 930 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND---------------DGV---PTGECMVAFESQEEARRASMDLD 930 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecC---------------CCC---cccceeEeecCHHHHHhhhhccc
Confidence 46688999999999999999999765 467776521 111 25779999999999999999998
Q ss_pred cccccc
Q 015730 369 FMIMLF 374 (401)
Q Consensus 369 ~~~~~~ 374 (401)
+..+..
T Consensus 931 ~~~i~n 936 (944)
T KOG4307|consen 931 GQKIRN 936 (944)
T ss_pred cCcccc
Confidence 876554
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.75 E-value=0.0072 Score=66.74 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=53.8
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.+..++||+||+..++.++|...|+.+|.+..|++..-.. .+ . .+|.|||+|...++|.+||.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n--------------~~-~--~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN--------------EK-R--FRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh--------------cc-c--cccceeeEeecCCchhhhhh
Confidence 4567899999999999999999999999998888752211 11 1 28999999999999999998
Q ss_pred Hhc
Q 015730 366 HLH 368 (401)
Q Consensus 366 ~ln 368 (401)
...
T Consensus 728 f~d 730 (881)
T KOG0128|consen 728 FRD 730 (881)
T ss_pred hhh
Confidence 554
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.68 E-value=0.05 Score=55.71 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=59.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhc-----cCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSA-----VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~-----fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
.-+|-..+||+|++..++.++|.. -|.+.-+.+.++. .| ..|=|||.|..+++|+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd---------gr----------pTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD---------GR----------PTGDAFVLFACEEDAQF 221 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC---------CC----------cccceEEEecCHHHHHH
Confidence 346777999999999999999973 3443334443331 12 25779999999999999
Q ss_pred HHHHhcccccccccceEEEeecccCHHHHHHHHHHHh
Q 015730 363 AVSHLHFMIMLFFFSAFCLMFVTQTNEIRTSFLADCR 399 (401)
Q Consensus 363 Av~~ln~~~~~~~~~~~~~~~~~~~~e~R~~~~~~~~ 399 (401)
|+..-.+.+ +++|+..|+ +++-|=-+.++++.
T Consensus 222 aL~khrq~i----GqRYIElFR-STaaEvqqvlnr~~ 253 (508)
T KOG1365|consen 222 ALRKHRQNI----GQRYIELFR-STAAEVQQVLNREV 253 (508)
T ss_pred HHHHHHHHH----hHHHHHHHH-HhHHHHHHHHHhhc
Confidence 998665443 456665544 45555556666654
No 130
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.67 E-value=0.018 Score=59.29 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=48.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
++.|-++|||.++++++|-.++..||+|+.+.+++- |.-||+||.++++|..-+...
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvtmv~~y 84 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVTMVNYY 84 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhheeecc
Confidence 678999999999999999999999999999988631 335999999999988755544
No 131
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.44 E-value=0.088 Score=44.50 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=42.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+.|.|=++|.. ....|.+.|++||.|....-+.....+.. ..+.+....+..|.|++..+|++||.+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~----------~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGIN----------PYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccc----------cccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 3556778899888 45677789999999976652211000000 001223366889999999999999984
Q ss_pred hcccc
Q 015730 367 LHFMI 371 (401)
Q Consensus 367 ln~~~ 371 (401)
|+.+
T Consensus 74 -NG~i 77 (100)
T PF05172_consen 74 -NGTI 77 (100)
T ss_dssp -TTEE
T ss_pred -CCeE
Confidence 4444
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.34 E-value=0.064 Score=54.92 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=61.4
Q ss_pred hheeccCCCCcccHHHHHHHHhccCC-eeE--EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~-V~~--Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
-+|-..+||+.++.|+|-.+|+.|-. |.. |.|..... | ...|-|||+|.++|+|..|..
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-G-----------------rPSGeAFIqm~nae~a~aaaq 342 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-G-----------------RPSGEAFIQMRNAERARAAAQ 342 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-C-----------------CcChhhhhhhhhhHHHHHHHH
Confidence 47888999999999999999999864 433 66654321 1 126779999999999999988
Q ss_pred HhcccccccccceEEEeecccCHHH
Q 015730 366 HLHFMIMLFFFSAFCLMFVTQTNEI 390 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~~~~~e~ 390 (401)
.+.+..+ +++|+.+|....+|.
T Consensus 343 k~hk~~m---k~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 343 KCHKKLM---KSRYIEVFPCSVEEL 364 (508)
T ss_pred HHHHhhc---ccceEEEeeccHHHH
Confidence 8876654 578998887655554
No 133
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=94.27 E-value=0.029 Score=33.04 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.6
Q ss_pred ccccccCCCCCCCCCC
Q 015730 36 SFSRLNAKAPEFVPTR 51 (401)
Q Consensus 36 ~~~~~~~~~p~~~p~~ 51 (401)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999974
No 134
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.26 E-value=0.092 Score=55.86 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=42.1
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 303 edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
|+|+.-+++||.|..|.+-++-.. . -.....|.+||||.+.+++++|.++|++.....
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~--------~------~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPD--------E------NPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCC--------C------CcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 455566689999999998554100 0 011236889999999999999999999877443
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.05 E-value=0.13 Score=52.70 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=55.8
Q ss_pred hhheeccCCCCc-ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d-~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.+.+.|-+|..+ ++-+.|-.+|=.||.|++|+.++.+ .|-|.||+.+..+.++||..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHHH
Confidence 345667778654 5678899999999999999997532 56799999999999999999
Q ss_pred hcccccccccceEE
Q 015730 367 LHFMIMLFFFSAFC 380 (401)
Q Consensus 367 ln~~~~~~~~~~~~ 380 (401)
||+..+..++..+|
T Consensus 345 Lnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVC 358 (494)
T ss_pred hccCccccceEEEe
Confidence 99887744434444
No 136
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=93.99 E-value=0.037 Score=62.44 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=47.6
Q ss_pred hccCCCCceecccccchhhHHhhhcCHHHHHHhhhc-CcceEEeccccccccCC
Q 015730 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQN 276 (401)
Q Consensus 224 i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~-S~~LEVsedg~kVRRk~ 276 (401)
+.-|.+|||-|.++|+...+--+..+-+-|..||.+ |.+|+|+.||.|||.+-
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 345789999999999999999999999999999975 88999999999999875
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.42 E-value=0.057 Score=52.61 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=52.9
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
..|||.||...++.|.|++-|+.||.|...-++-+ .|..- .+-++|+|...-.|.+|...++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD----------~r~k~--------t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD----------DRGKP--------TREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec----------ccccc--------cccchhhhhcchhHHHHHHHhc
Confidence 68999999999999999999999999988766533 23211 3447899999999999999986
Q ss_pred ccc
Q 015730 369 FMI 371 (401)
Q Consensus 369 ~~~ 371 (401)
...
T Consensus 94 ~~g 96 (275)
T KOG0115|consen 94 EGG 96 (275)
T ss_pred cCc
Confidence 554
No 138
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.30 E-value=0.042 Score=53.48 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHHHh-ccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEE
Q 015730 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFC 380 (401)
Q Consensus 302 ~edL~~lFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~ 380 (401)
.|+|-..|+ +||+|+.+.++.. ..-- -.|.+||.|..+|+|++|+..||+.-... .++.
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~N-----------l~~h-------l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G--~pi~ 141 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDN-----------LGDH-------LVGNVYVKFRSEEDAEAALEDLNNRWYNG--RPIH 141 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcc-----------cchh-------hhhhhhhhcccHHHHHHHHHHHcCccccC--Ccce
Confidence 344444445 8999999988631 1111 16789999999999999999999765443 4566
Q ss_pred Eeecc
Q 015730 381 LMFVT 385 (401)
Q Consensus 381 ~~~~~ 385 (401)
..++.
T Consensus 142 ae~~p 146 (260)
T KOG2202|consen 142 AELSP 146 (260)
T ss_pred eeecC
Confidence 55543
No 139
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.18 E-value=0.31 Score=37.77 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=39.8
Q ss_pred hheeccCCCCcccHHHHHHHHhcc----CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAV----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~f----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
-.|+|.|+ .+++-++|+.+|..| +. .+|.-+- ...|-|.|.+.+.|.+|+
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWId------------------------DtScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWID------------------------DTSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEec------------------------CCcEEEEECCHHHHHHHH
Confidence 36888888 568889999999999 43 2333221 235789999999999999
Q ss_pred HHh
Q 015730 365 SHL 367 (401)
Q Consensus 365 ~~l 367 (401)
..|
T Consensus 60 ~~L 62 (62)
T PF10309_consen 60 VAL 62 (62)
T ss_pred HcC
Confidence 765
No 140
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.98 E-value=0.25 Score=40.58 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.0
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
-||--.||...-..||.++|+.||.|.--.| +...|||....++.|..|++.++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-------------------------~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-------------------------NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-------------------------CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-------------------------cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3554459999999999999999999876665 145799999999999999998864
No 141
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.96 E-value=0.081 Score=53.25 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=50.8
Q ss_pred hhhhheeccCCCCcccHHHH---HHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNL---MKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL---~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
++..-+||-+|+.+.-.+++ .++|.+||.|..|.+.+... ..+.. ++...+||+|+..|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------~~s~~----~~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------SSSSS----GGTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------cccCC----CCCCcccccccchHhhhh
Confidence 45567889999877654443 45899999999999865321 01111 113358999999999999
Q ss_pred HHHHhccccc
Q 015730 363 AVSHLHFMIM 372 (401)
Q Consensus 363 Av~~ln~~~~ 372 (401)
||...++.+.
T Consensus 141 ci~~v~g~~~ 150 (327)
T KOG2068|consen 141 CIDDVDGFVD 150 (327)
T ss_pred HHHHhhhHHh
Confidence 9998765543
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.92 E-value=0.048 Score=60.45 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=56.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|+|.|.|+..|.+.|+.+|+++|.++.+++.. .|.+| .||-|||.|.++.+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gk-------pkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGK-------PKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhccc-------cccceeccCCCcchhhhhcccc
Confidence 45799999999999999999999999999998642 34444 3889999999999999998877
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
+...+..
T Consensus 798 d~~~~rE 804 (881)
T KOG0128|consen 798 DVAGKRE 804 (881)
T ss_pred hhhhhhh
Confidence 6554433
No 143
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.52 E-value=0.26 Score=52.22 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=52.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHh-ccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..|||||++||.-++-++|-.+|+ -||-|..|-|-.|. ..|+ .||-|=|.|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~-----------k~KY------PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP-----------KLKY------PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc-----------ccCC------CCCcceeeecccHHHHHHHh
Confidence 368999999999999999999999 59999999883221 1222 38999999999999999998
Q ss_pred H
Q 015730 366 H 366 (401)
Q Consensus 366 ~ 366 (401)
.
T Consensus 432 a 432 (520)
T KOG0129|consen 432 A 432 (520)
T ss_pred h
Confidence 4
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.44 E-value=8.6 Score=42.67 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=46.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeE-EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.-.|||+.||..+++.++.++|++--.|+. |.|.+- |.+.+ ++-|||+|..++++.+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~~-----------~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDLL-----------RPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Ccccc-----------cchhhheeccccccchhhhc
Confidence 347999999999999999999998766665 666431 11212 56799999998888888664
Q ss_pred h
Q 015730 367 L 367 (401)
Q Consensus 367 l 367 (401)
-
T Consensus 496 ~ 496 (944)
T KOG4307|consen 496 K 496 (944)
T ss_pred c
Confidence 3
No 145
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=91.51 E-value=0.11 Score=54.95 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=4.4
Q ss_pred HHHHHHhc
Q 015730 304 NLMKIFSA 311 (401)
Q Consensus 304 dL~~lFs~ 311 (401)
+|..+|+.
T Consensus 741 eldnvfsa 748 (990)
T KOG1819|consen 741 ELDNVFSA 748 (990)
T ss_pred chhhhhcc
Confidence 45556654
No 146
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.18 E-value=2.1 Score=45.46 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.7
Q ss_pred HHHHhhccc
Q 015730 198 IQKVLNQVE 206 (401)
Q Consensus 198 ~~kI~~QvE 206 (401)
+..+..||.
T Consensus 495 R~~LmaqIR 503 (569)
T KOG3671|consen 495 RDALMAQIR 503 (569)
T ss_pred HHHHHHHHH
Confidence 444444433
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.50 E-value=0.26 Score=54.92 Aligned_cols=70 Identities=24% Similarity=0.109 Sum_probs=55.8
Q ss_pred eeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccc
Q 015730 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFM 370 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~ 370 (401)
.++.|.+-..+.-.|-.+|++||+|.++|.+|+ -..|.|+|.+.|.|-.|.+.|.+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcCC
Confidence 345566666788889999999999999999764 235899999999999999999988
Q ss_pred ccccccceEEEee
Q 015730 371 IMLFFFSAFCLMF 383 (401)
Q Consensus 371 ~~~~~~~~~~~~~ 383 (401)
.....+-+-.+++
T Consensus 358 evs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSF 370 (1007)
T ss_pred cccccCCceeEEe
Confidence 7777555555544
No 148
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.15 E-value=1.4 Score=49.05 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.3
Q ss_pred heeccCCCCcc
Q 015730 290 IVVAENLPEDH 300 (401)
Q Consensus 290 tVyV~nLP~d~ 300 (401)
.=|++||++++
T Consensus 530 M~~m~nF~dsv 540 (830)
T KOG1923|consen 530 MEFMGNFPDSV 540 (830)
T ss_pred HHHHHhchhhh
Confidence 34678888764
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.27 E-value=0.73 Score=47.54 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=60.4
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
..|-|.||...+|.+.+..||.-.|+|..++|. |.--..++++- .-.|||-|.+...+.-|- .|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~vaQ-hLt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVAQ-HLT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHHh-hhc
Confidence 478899999999999999999999999999984 43222222221 346999999988876554 466
Q ss_pred ccccccccceEEEeecccCHHHHH
Q 015730 369 FMIMLFFFSAFCLMFVTQTNEIRT 392 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~e~R~ 392 (401)
+..+..- -.||++........|-
T Consensus 73 ntvfvdr-aliv~p~~~~~~p~r~ 95 (479)
T KOG4676|consen 73 NTVFVDR-ALIVRPYGDEVIPDRF 95 (479)
T ss_pred cceeeee-eEEEEecCCCCCccHH
Confidence 6665442 2356555554444443
No 150
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.06 E-value=0.16 Score=56.73 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=59.7
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
....+|||++||...+++.+|+..|..+|.|..|.|-.+.- +. ..-|+||.|.+...+-+|+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------~~------esa~~f~~~~n~dmtp~ak 430 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------KT------ESAYAFVSLLNTDMTPSAK 430 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------Cc------ccchhhhhhhccccCcccc
Confidence 34578999999999999999999999999999999965421 11 1347999999999999999
Q ss_pred HHhcccccccc
Q 015730 365 SHLHFMIMLFF 375 (401)
Q Consensus 365 ~~ln~~~~~~~ 375 (401)
-++.+..+..+
T Consensus 431 ~e~s~~~I~~g 441 (975)
T KOG0112|consen 431 FEESGPLIGNG 441 (975)
T ss_pred hhhcCCccccC
Confidence 99877666553
No 151
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=88.03 E-value=1.5 Score=48.81 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.9
Q ss_pred hHHHHHHhhcc
Q 015730 195 DESIQKVLNQV 205 (401)
Q Consensus 195 ~e~~~kI~~Qv 205 (401)
+.+.++|.+++
T Consensus 391 ~~~De~Il~~l 401 (830)
T KOG1923|consen 391 ELNDEKILEAL 401 (830)
T ss_pred hhhHHHHHHhh
Confidence 33344555444
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.51 E-value=0.48 Score=51.08 Aligned_cols=75 Identities=25% Similarity=0.257 Sum_probs=57.2
Q ss_pred hhheeccCCCCcccHHHHHHHHh-ccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+..|+|.||=.-+|+-.|++++. .+|.|+..+| + |+ |.+|||.|.+.++|-.....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D--------------kI-------KShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D--------------KI-------KSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH--H--------------Hh-------hcceeEecccHHHHHHHHHH
Confidence 56799999999999999999999 5777877776 2 11 66899999999999999999
Q ss_pred hccccccc-ccceEEEeecc
Q 015730 367 LHFMIMLF-FFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~-~~~~~~~~~~~ 385 (401)
|++..-=. ..+-+|+.|..
T Consensus 501 lhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 501 LHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HhccccCCCCCceeEeeecc
Confidence 98754222 34445555543
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.21 E-value=0.9 Score=47.37 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=58.7
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.+|++||....+..+|+.+|..-- + + + .|.++-..||+||.+.+..-|.+|++.+++
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~--~---~------------~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------I--P---G------------SGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------C--C---C------------CcceeeecceeeccCCchhhhhhhHHhhch
Confidence 589999999999999999997631 1 0 0 112223378999999999999999999998
Q ss_pred cccccccceEEEee-cccCHHHHHHHHH
Q 015730 370 MIMLFFFSAFCLMF-VTQTNEIRTSFLA 396 (401)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~e~R~~~~~ 396 (401)
...+-+ ++..+.- +.++...|+..|.
T Consensus 60 k~elqG-kr~e~~~sv~kkqrsrk~Qir 86 (584)
T KOG2193|consen 60 KVELQG-KRQEVEHSVPKKQRSRKIQIR 86 (584)
T ss_pred hhhhcC-ceeeccchhhHHHHhhhhhHh
Confidence 876664 4444333 3455566775553
No 154
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.75 E-value=3.8 Score=35.19 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=49.0
Q ss_pred cCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccc
Q 015730 294 ENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIM 372 (401)
Q Consensus 294 ~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~ 372 (401)
-..|.-++.++|..+.+.+- .|..+||+++... ++--+.+.|.+.++|.....++|+...
T Consensus 19 ~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 19 AVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34445556667776666654 5778999876421 244589999999999999999999876
Q ss_pred ccccceEEEe
Q 015730 373 LFFFSAFCLM 382 (401)
Q Consensus 373 ~~~~~~~~~~ 382 (401)
...-.+.|-.
T Consensus 80 nslEpE~Chv 89 (110)
T PF07576_consen 80 NSLEPETCHV 89 (110)
T ss_pred CCCCCceeEE
Confidence 6654455543
No 155
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.44 E-value=2.1 Score=45.95 Aligned_cols=39 Identities=18% Similarity=-0.048 Sum_probs=30.8
Q ss_pred cCcceEEEEecCHHHHHHHHHHhcccccccccceEEEee
Q 015730 345 SNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 345 ~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~ 383 (401)
+|.|||||-|.+.+++.+++++++++.-+.+.......|
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 357999999999999999999999987666544444333
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=86.03 E-value=1.2 Score=45.49 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=49.3
Q ss_pred hheeccCCCCcccHHHHHHHHhccCC--eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~--V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
-.+||+||-+.+|.+||.+.....|- +..+++... |. +| -.||||+|...+..+.++.++-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-----------R~---NG---QSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-----------RT---NG---QSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-----------cc---CC---cccceEEEEecchHHHHHHHHh
Confidence 36899999999999999888877664 333433221 21 11 1399999999999988888887
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|-...+..
T Consensus 144 LP~k~iHG 151 (498)
T KOG4849|consen 144 LPTKTIHG 151 (498)
T ss_pred cccceecC
Confidence 75555444
No 157
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=86.00 E-value=0.85 Score=51.32 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=60.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.+-++|++|...+....|...|..||.|..|.+.. ...||||.|++...|+.|+..|
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----------------------gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----------------------GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----------------------CCcceeeecccCccchhhHHHH
Confidence 56689999999999999999999999999987732 1568999999999999999999
Q ss_pred cccccccccceEEEee
Q 015730 368 HFMIMLFFFSAFCLMF 383 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~ 383 (401)
.+..+.....++++-|
T Consensus 512 rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDL 527 (975)
T ss_pred hcCcCCCCCccccccc
Confidence 8777666555655544
No 158
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=85.36 E-value=0.72 Score=47.40 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=47.8
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-.|-|.+|-..+++.+|-+..+.||.|..|.++ |. +.-|.|||++.+.|+.||...
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~-P~----------------------~r~alvefedi~~akn~Vnfa 87 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM-PH----------------------KRQALVEFEDIEGAKNCVNFA 87 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEec-cc----------------------cceeeeeeccccchhhheehh
Confidence 357789999999999999999999999999875 31 345899999999999999854
No 159
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=83.05 E-value=3.6 Score=37.18 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 302 ~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
..+|-+.|..||+|..||+.. +.-+|+|.+-++|.+|+. +++..++.
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred HHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccHHHHHHHc-cCCcEECC
Confidence 357888899999999998852 236799999999988887 55555444
No 160
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=82.00 E-value=3 Score=41.73 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccc
Q 015730 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMI 371 (401)
Q Consensus 302 ~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~ 371 (401)
++++++-.++||+|.+|-|.-.. + .+.+ + -.-.||||+..++|.||+-.||+.-
T Consensus 300 ede~keEceKyg~V~~viifeip--~--~p~d-e-----------avRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIP--S--QPED-E-----------AVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecC--C--Cccc-h-----------hheeeeeeccHHHHHHHHHhcCCce
Confidence 45788889999999988764321 1 1111 1 1237999999999999999999765
No 161
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=81.63 E-value=14 Score=38.85 Aligned_cols=6 Identities=0% Similarity=0.329 Sum_probs=2.5
Q ss_pred HHHHHH
Q 015730 196 ESIQKV 201 (401)
Q Consensus 196 e~~~kI 201 (401)
|++..|
T Consensus 458 dLL~aI 463 (518)
T KOG1830|consen 458 DLLAAI 463 (518)
T ss_pred HHHHHH
Confidence 344444
No 162
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.79 E-value=3.5 Score=43.40 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=58.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|.|-.+|..+|.-||..+...|- .|..||++|+... |+-.++|.|.+.++|...+++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 56888889999999999999888754 5889999985321 244689999999999999999
Q ss_pred hcccccccccceEEE
Q 015730 367 LHFMIMLFFFSAFCL 381 (401)
Q Consensus 367 ln~~~~~~~~~~~~~ 381 (401)
+|+......-.+.|-
T Consensus 135 fNGk~Fn~le~e~Ch 149 (493)
T KOG0804|consen 135 FNGKQFNSLEPEVCH 149 (493)
T ss_pred cCCCcCCCCCcccee
Confidence 998875554333443
No 163
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=80.71 E-value=1.4 Score=40.79 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=44.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhc-cCCe---eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~-fG~V---~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
....|+|.+||.++|++++.+.++. +|.- ..+.-..+.... +. .. -.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~----------~~--~~---~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSF----------KP--PT---YSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSS----------TT--S-----EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccC----------CC--Cc---ceEEEEEeCCHHHHHH
Confidence 3457999999999999998887766 6654 344322222111 00 00 1239999999999999
Q ss_pred HHHHhccccccc
Q 015730 363 AVSHLHFMIMLF 374 (401)
Q Consensus 363 Av~~ln~~~~~~ 374 (401)
.+..+++.....
T Consensus 71 F~~~~~g~~F~D 82 (176)
T PF03467_consen 71 FRDRFDGHVFVD 82 (176)
T ss_dssp HHHHCTTEEEE-
T ss_pred HHHhcCCcEEEC
Confidence 999987755433
No 164
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.98 E-value=0.95 Score=47.72 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=46.2
Q ss_pred hhhhheeccCCCCcc-cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~-t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
.+.+++-+.-.+... +.++|...|.+||+|..|.+.+. ...|+|+|.+..+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 456777777777665 67899999999999999998542 235899999999998887
Q ss_pred HH
Q 015730 365 SH 366 (401)
Q Consensus 365 ~~ 366 (401)
..
T Consensus 427 ~s 428 (526)
T KOG2135|consen 427 AS 428 (526)
T ss_pred cc
Confidence 63
No 165
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=75.34 E-value=2.1 Score=39.86 Aligned_cols=39 Identities=10% Similarity=0.416 Sum_probs=34.6
Q ss_pred hccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcc
Q 015730 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (401)
Q Consensus 224 i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~ 262 (401)
+.+++||||+++.+++.++.+.+...+++|.++++.-.+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 457899999999999999999999899999999987553
No 166
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=74.18 E-value=1.2 Score=46.07 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=49.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.|||+|.+|..++...++.++|..+|.|...++.- + ..+.+|-|+|........|+...
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------------k------~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS---------------K------SRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------------c------CCCcchhhhHhhhhhHHHHHHhc
Confidence 38999999999999999999999999998888741 1 12456779999888888887765
Q ss_pred cc
Q 015730 368 HF 369 (401)
Q Consensus 368 n~ 369 (401)
+.
T Consensus 210 gr 211 (479)
T KOG4676|consen 210 GR 211 (479)
T ss_pred ch
Confidence 43
No 167
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.96 E-value=10 Score=29.66 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.1
Q ss_pred cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccc
Q 015730 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIML 373 (401)
Q Consensus 299 d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~ 373 (401)
.++.++|+..+..|+- ..|+. ++ .| -||.|.+.++|++|....++....
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 5688999999999973 33432 21 33 589999999999999998876643
No 168
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=73.64 E-value=1.5 Score=46.65 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.3
Q ss_pred CCCChHH
Q 015730 191 GGLNDES 197 (401)
Q Consensus 191 ~~~~~e~ 197 (401)
..+++++
T Consensus 633 sslsddv 639 (990)
T KOG1819|consen 633 SSLSDDV 639 (990)
T ss_pred ccccchh
Confidence 3445554
No 169
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=72.84 E-value=2.4 Score=39.65 Aligned_cols=52 Identities=15% Similarity=0.423 Sum_probs=32.5
Q ss_pred ccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc--ceEEe---ccccccccCC
Q 015730 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVS---EDGKKIKRQN 276 (401)
Q Consensus 225 ~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~--~LEVs---edg~kVRRk~ 276 (401)
.++.+|||+++-++...+.+....+.+.|.+++.++. ..++. .++.+||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 4789999999999999988866667888888888765 35666 4567787654
No 170
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=71.10 E-value=3.4 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=13.4
Q ss_pred ccccccccCCccCcCccCCCCc
Q 015730 111 HVIPVHHQMHHQHHVPVQNYHH 132 (401)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ 132 (401)
|+.-...+.|+.|+.-+++.+.
T Consensus 76 ~v~t~ka~~PpeHLrki~~~~s 97 (2365)
T COG5178 76 HVLTLKAPIPPEHLRKIQSPCS 97 (2365)
T ss_pred eeeccCCCCCHHHHHhhhCccc
Confidence 4444455666677777766655
No 171
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=70.47 E-value=3 Score=38.85 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=36.6
Q ss_pred hccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcc--eEEeccccccccCC
Q 015730 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (401)
Q Consensus 224 i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~--LEVsedg~kVRRk~ 276 (401)
+.+|.+|||+++.++...+.+....+.+.|.+++.++.+ .+++ +.+||-.+
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~q 78 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQ 78 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEecc
Confidence 357899999999999876644333477888888887765 4554 56777664
No 172
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.60 E-value=17 Score=39.53 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=59.6
Q ss_pred hhheeccCCCCc-ccHHHHHHHHhcc----CCeeEEEEecCCCCCCC--------CC-------CC--------------
Q 015730 288 SRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-------SG-------------- 333 (401)
Q Consensus 288 ~rtVyV~nLP~d-~t~edL~~lFs~f----G~V~~Vri~~p~~~~~~--------~p-------~~-------------- 333 (401)
.+.|.|-|+.++ +.-++|.-+|+.| |.|.+|.|+ |..-|+. .| ++
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY-pSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY-PSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec-hhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 567889999987 5678999999987 689999885 3222221 01 00
Q ss_pred -----CCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEee
Q 015730 334 -----SRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 334 -----~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~ 383 (401)
.|.+.++ .+ .-=||+|+|++.+.|.+.+++|++...+.....+=..|
T Consensus 253 ~~~~kLR~Yq~~-rL--kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLN-RL--KYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhh-hh--eeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0111110 00 02379999999999999999998877666444343333
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.40 E-value=2.8 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=24.7
Q ss_pred hheeccCCCCc------------ccHHHHHHHHhccCCeeEEEE
Q 015730 289 RIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRT 320 (401)
Q Consensus 289 rtVyV~nLP~d------------~t~edL~~lFs~fG~V~~Vri 320 (401)
-||+..+||-. .+++-|...|..||.|..|.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 37887777732 356789999999999987765
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.03 E-value=23 Score=35.53 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=52.3
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...|+|..+|+..+++.-.+..-|-+||.|++|.++..++... +.... + +.+.+..+-|-+++.+...+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~----d~~~~--d----~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPS----DDYND--D----KNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccc----ccccc--c----ccceEEEEeeechHHHHHHHH
Confidence 4578999999999999999999999999999999986542111 11100 0 124578899999998877665
Q ss_pred H
Q 015730 366 H 366 (401)
Q Consensus 366 ~ 366 (401)
.
T Consensus 83 n 83 (309)
T PF10567_consen 83 N 83 (309)
T ss_pred H
Confidence 3
No 175
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=59.94 E-value=20 Score=33.51 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=33.1
Q ss_pred ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 300 ~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
...+.|+++|..|+.+.....++ + -+=..|.|.+.++|.+|...|+
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~---------------s--------FrRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLK---------------S--------FRRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEET---------------T--------TTEEEEE-SSTTHHHHHHHTST
T ss_pred hhHHHHHHHHHhcCCceEEEEcC---------------C--------CCEEEEEeCCHHHHHHHHHHhc
Confidence 34588999999999987776652 0 1237899999999999999988
No 176
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=57.33 E-value=6.5 Score=39.18 Aligned_cols=65 Identities=15% Similarity=0.021 Sum_probs=51.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+++|++++-+++.+.++..+|..+|.+...++..-.. -...+|+++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----------------~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----------------SLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc-----------------ccccccceeeccccHHHHHHHHHh
Confidence 367899999999999999999999999876666543211 123489999999999999999886
Q ss_pred hc
Q 015730 367 LH 368 (401)
Q Consensus 367 ln 368 (401)
..
T Consensus 150 s~ 151 (285)
T KOG4210|consen 150 SG 151 (285)
T ss_pred hh
Confidence 53
No 177
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.69 E-value=10 Score=32.82 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=22.1
Q ss_pred ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 300 ~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
.+.+.|++.|+.|..++ |+.++.. .++.|+++|+|.+-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCC
Confidence 35688999999998875 5555421 03488999999984
No 178
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=53.07 E-value=1.8e+02 Score=30.92 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.2
Q ss_pred HHHHhhc
Q 015730 219 HLIRFIL 225 (401)
Q Consensus 219 fL~~~i~ 225 (401)
-|+..|+
T Consensus 458 dLL~aIr 464 (518)
T KOG1830|consen 458 DLLAAIR 464 (518)
T ss_pred HHHHHHH
Confidence 3444444
No 179
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.73 E-value=28 Score=35.17 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=39.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+..|.|=+|+.... .-|..+|++||+|.....- + +-.+-+|-|.++-+|+|||..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~---------------------ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S---------------------NGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--C---------------------CCceEEEEecchhHHHHhhhh
Confidence 44566668876543 3566789999999877541 1 123678999999999999884
No 180
>PRK11901 hypothetical protein; Reviewed
Probab=49.32 E-value=15 Score=37.41 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=40.9
Q ss_pred ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEE--EecCHHHHHHHHHHhcccccccccc
Q 015730 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV--EYESVELAEKAVSHLHFMIMLFFFS 377 (401)
Q Consensus 300 ~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFV--EFes~E~A~kAv~~ln~~~~~~~~~ 377 (401)
..++.|+.|..+.+ +..+++.+. .|.++ ..|++| +|.+.++|+.|++.|-..+... +
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT----------~RnGk--------pWYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~--~ 312 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYET----------KRDGK--------PWYVLVSGNYASSAEAKRAIATLPAEVQAK--K 312 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEE----------EECCc--------eEEEEEecCcCCHHHHHHHHHhCCHHHHhC--C
Confidence 45677888877775 344555321 12222 234433 8999999999999998766544 2
Q ss_pred eEEEeecccCHH
Q 015730 378 AFCLMFVTQTNE 389 (401)
Q Consensus 378 ~~~~~~~~~~~e 389 (401)
+|..-|..-++|
T Consensus 313 PWvRsi~qVQqE 324 (327)
T PRK11901 313 PWVKPVQQVQQD 324 (327)
T ss_pred CCcCcHHHHHHH
Confidence 444333333333
No 181
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=49.01 E-value=9.4 Score=41.96 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=48.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.-+|||+|+-..+..+=++.+...||-|.+...+ + |+|.+|.....+.+|+..|
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~~ 93 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRLL 93 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHHh
Confidence 4589999999999999999999999988655331 2 7999999999999999988
Q ss_pred ccccc
Q 015730 368 HFMIM 372 (401)
Q Consensus 368 n~~~~ 372 (401)
+....
T Consensus 94 t~~~~ 98 (668)
T KOG2253|consen 94 TELNI 98 (668)
T ss_pred cccCC
Confidence 65544
No 182
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=48.76 E-value=64 Score=35.09 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=6.6
Q ss_pred HHHHHHHhccC
Q 015730 303 QNLMKIFSAVG 313 (401)
Q Consensus 303 edL~~lFs~fG 313 (401)
.-|..+|+-.|
T Consensus 417 ~~l~~vyeiLG 427 (582)
T PF03276_consen 417 QHLNRVYEILG 427 (582)
T ss_pred HHHHHHHHHhC
Confidence 34666776655
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=48.61 E-value=1.8e+02 Score=30.26 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=3.9
Q ss_pred hhheeccCC
Q 015730 288 SRIVVAENL 296 (401)
Q Consensus 288 ~rtVyV~nL 296 (401)
.|.|.|.+|
T Consensus 413 RCrvLissL 421 (498)
T KOG4849|consen 413 RCRVLISSL 421 (498)
T ss_pred HHHHHHHHH
Confidence 344444443
No 184
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.87 E-value=17 Score=38.36 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.0
Q ss_pred cccccccCCCcCcCH
Q 015730 204 QVEYYFSDLNLATTD 218 (401)
Q Consensus 204 QvEfYFSd~NL~~D~ 218 (401)
-||+|-.+.||.-|.
T Consensus 335 ~VEnq~~~~~~Vi~~ 349 (480)
T KOG2675|consen 335 RVENQENNKNLVIDD 349 (480)
T ss_pred EEeeecCCcceeeee
Confidence 588999998987764
No 185
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=47.69 E-value=86 Score=34.13 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.2
Q ss_pred CCCCccccc
Q 015730 107 TGAFHVIPV 115 (401)
Q Consensus 107 ~~~~~~~~~ 115 (401)
++...|+|+
T Consensus 258 p~~~~ViPI 266 (582)
T PF03276_consen 258 PPPQPVIPI 266 (582)
T ss_pred CCccccccH
Confidence 344566676
No 186
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=38.15 E-value=1.2e+02 Score=31.56 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=21.7
Q ss_pred CcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccc
Q 015730 215 ATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (401)
Q Consensus 215 ~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~ 270 (401)
-+|.||.+. | |.+.++-.|.|- .+.||++...+.-.-||+
T Consensus 272 ykdaf~kKh------G-vKlGfMs~F~KA---------~~~Alq~qPvVNavIdg~ 311 (457)
T KOG0559|consen 272 YKDAFLKKH------G-VKLGFMSGFSKA---------AAYALQDQPVVNAVIDGD 311 (457)
T ss_pred HHHHHHHHh------C-ceeeehhHHHHH---------HHHHhhhCcceeeeecCC
Confidence 356676664 2 444444455543 345677777665554554
No 187
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=37.39 E-value=60 Score=35.13 Aligned_cols=21 Identities=29% Similarity=0.668 Sum_probs=12.1
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCe
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V 315 (401)
|+++|++||+.. ++++.||.|
T Consensus 520 c~~vVE~Fpess------DLYSEiGA~ 540 (817)
T KOG1925|consen 520 CSLVVETFPESS------DLYSEIGAL 540 (817)
T ss_pred HHHHHHhCCcch------hHHHHhHhh
Confidence 455666666554 246666655
No 188
>PTZ00315 2'-phosphotransferase; Provisional
Probab=37.27 E-value=24 Score=38.69 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=38.6
Q ss_pred hccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc--ceEEe---ccc-cccccCC
Q 015730 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVS---EDG-KKIKRQN 276 (401)
Q Consensus 224 i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~--~LEVs---edg-~kVRRk~ 276 (401)
+.+|.+|||.|+.++.-.+.+....+.++|.++++++. ..+++ ++| .+||-..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 45789999999999987776654457788888888765 46776 344 3577654
No 189
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.46 E-value=53 Score=30.44 Aligned_cols=89 Identities=13% Similarity=0.292 Sum_probs=46.8
Q ss_pred ChHHHHHHhhcccccccCCCcCcCH---HHHHhhccCCCCceecccccchhhHHhhhcC------HHHHHHhhhcCcceE
Q 015730 194 NDESIQKVLNQVEYYFSDLNLATTD---HLIRFILKDPEGYVPISTVASFKKIKAIISS------HSHLASVLRKSSKLV 264 (401)
Q Consensus 194 ~~e~~~kI~~QvEfYFSd~NL~~D~---fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d------~e~I~eALk~S~~LE 264 (401)
.+..++.++.||+-|== +.-|. |++++ .||...+ .||++|..- .+.+.+||+-++.
T Consensus 69 ~d~~l~efl~qLddYtP---~IPDavt~~yL~~-----aGf~~~D-----~rv~RLvsLaAQKfvSDIa~DA~Q~~k~-- 133 (176)
T KOG3423|consen 69 KDTHLEEFLAQLDDYTP---TIPDAVTDHYLKK-----AGFQTSD-----PRVKRLVSLAAQKFVSDIANDALQHSKI-- 133 (176)
T ss_pred cchHHHHHHHHHhcCCC---CCcHHHHHHHHHh-----cCCCcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 45567888899998743 33342 33332 4765333 355555532 2456677766532
Q ss_pred EeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccC
Q 015730 265 VSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVG 313 (401)
Q Consensus 265 Vsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG 313 (401)
|-...+...- ...+.+. ...|.++|......||
T Consensus 134 --------r~~~~~~~~k-~~~kdkK-------~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 134 --------RTKTAIGKDK-KQAKDKK-------YTLTMEDLSPALAEYG 166 (176)
T ss_pred --------cccccccccc-ccccccc-------eeeeHHHHHHHHHHhC
Confidence 2211111110 0011111 2467899999999999
No 190
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=34.13 E-value=54 Score=35.46 Aligned_cols=44 Identities=30% Similarity=0.324 Sum_probs=27.6
Q ss_pred cCCCCceecccccchhhHHhhhc------CHHHHHHhhhcCcceEEeccc
Q 015730 226 KDPEGYVPISTVASFKKIKAIIS------SHSHLASVLRKSSKLVVSEDG 269 (401)
Q Consensus 226 ~~~eG~Vpi~~i~sFkKvK~lt~------d~e~I~eALk~S~~LEVsedg 269 (401)
+.++|---+-+++..+|-..+.. -+..|..||.+-..+.|+.||
T Consensus 339 K~~E~r~~~~tVL~~KRt~AINIGLT~LPPv~VI~AA~~~FD~~~~~KDG 388 (817)
T KOG1925|consen 339 KAGEGRRTMTTVLDPKRTNAINIGLTTLPPVHVIKAALLNFDEFAVSKDG 388 (817)
T ss_pred hhcccceeeeeecCcccccceeeccccCCchhhhHHHHhcchhhhcchhh
Confidence 45666666666666666655543 245666777666667777776
No 191
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.56 E-value=65 Score=33.87 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=36.4
Q ss_pred heeccCCCCcccHHHHHHHHhccCCe-eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.|-|.+||...--+||-.+|+.||.- -.|.-+ + ..+||-.|++...|..|+.
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kgfdIkWv-D-----------------------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-D-----------------------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCCceeEEe-e-----------------------cceeEEeecchHHHHHHhh
Confidence 45678999999899999999999752 112111 0 3367888888877777765
No 192
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.01 E-value=1.2e+02 Score=24.87 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCCcccHHHHHHHHhc-cC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 295 NLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 295 nLP~d~t~edL~~lFs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.+..+++-.+|++.++. || +|..|+.+... +. .--|||.+..-.+|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~----------~~----------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP----------KG----------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----------CC----------cEEEEEEeCCCCcHHHHHHhh
Confidence 45567788888888887 55 57777765421 00 113999999988888876654
No 193
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.90 E-value=2e+02 Score=22.00 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.9
Q ss_pred cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 301 t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
...+|.+++.++| +...+|. |. +.-+++|+-+++.+.++++.+.+..
T Consensus 35 ~i~~~~~~~~~~G-a~~~~~s-----Gs----------------G~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 35 EIDELKEAAEENG-ALGAKMS-----GS----------------GGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHHHTT-ESEEEEE-----TT----------------SSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCceecC-----CC----------------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3567888889999 5566662 10 1256888888899999999888753
No 194
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=29.09 E-value=41 Score=39.79 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=7.4
Q ss_pred HHHHHHhhhcCcce
Q 015730 250 HSHLASVLRKSSKL 263 (401)
Q Consensus 250 ~e~I~eALk~S~~L 263 (401)
-+-+.+-+.+|..|
T Consensus 223 de~v~dw~y~sr~l 236 (2365)
T COG5178 223 DEHVRDWVYTSRDL 236 (2365)
T ss_pred cHHHHHHHhhcccc
Confidence 34555555555555
No 195
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.49 E-value=1.2e+02 Score=30.73 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=39.6
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCe-eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH-------HHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV-------ELA 360 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~-------E~A 360 (401)
.-||++||+.|+-..||+..+.+-|-+ .+|.- -+..|-||..|-+. +++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----------------------kg~~~k~flh~~~~~~~~~~~~~~ 387 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----------------------KGHFGKCFLHFGNRKGVPSTQDDM 387 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-----------------------ecCCcceeEecCCccCCCCCchHH
Confidence 349999999999999999999887643 22221 12356799999764 455
Q ss_pred HHHHHHhc
Q 015730 361 EKAVSHLH 368 (401)
Q Consensus 361 ~kAv~~ln 368 (401)
.++++.+|
T Consensus 388 ~~~~~s~~ 395 (396)
T KOG4410|consen 388 DKVLKSLN 395 (396)
T ss_pred HHHhccCC
Confidence 55555554
No 196
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.17 E-value=58 Score=31.82 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCc--ceEEec-cccccccCCCCCcchhhhhhhhheeccC
Q 015730 219 HLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSE-DGKKIKRQNPLTESDLEELQSRIVVAEN 295 (401)
Q Consensus 219 fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~--~LEVse-dg~kVRRk~Pl~e~~~~e~~~rtVyV~n 295 (401)
|+.+- --.|||+--.-...+++=+++.+....+...++... .+.|+. |+...+.-..+++...--.+.+.+|.++
T Consensus 141 YI~EA--HpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg 218 (237)
T PF00837_consen 141 YIEEA--HPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGG 218 (237)
T ss_pred hHhhh--CcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCC
Confidence 55554 347899855554455544444433333222222222 355553 4433444456666543333578999998
Q ss_pred C-CCcccHHHHHHHHhcc
Q 015730 296 L-PEDHCHQNLMKIFSAV 312 (401)
Q Consensus 296 L-P~d~t~edL~~lFs~f 312 (401)
. |+....+||+++.++|
T Consensus 219 ~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 219 PGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCcCCHHHHHHHHHhc
Confidence 8 7888999999998876
No 197
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.12 E-value=1.7e+02 Score=23.57 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.9
Q ss_pred eeccCCCCcccHHHHHHHHhc-cC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 291 VVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
-|+=.+..+++-.+|++.++. || +|..|+.+.-.. . .| -|||.+..-++|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~----------~---------~K-KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR----------G---------EK-KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC----------C---------ce-EEEEEECCCCcHHHHHHhh
Confidence 344456678888899988887 55 567776653210 0 11 3999999888888776654
No 198
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.88 E-value=72 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.5
Q ss_pred cceEEEEecCHHHHHHHHHHhcccc
Q 015730 347 KLHAFVEYESVELAEKAVSHLHFMI 371 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln~~~ 371 (401)
|||.|||=.+.++..+|++.+.+..
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCHHHHHHHHhccccee
Confidence 8999999999999999999886544
No 199
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.84 E-value=1.5e+02 Score=31.29 Aligned_cols=19 Identities=37% Similarity=0.258 Sum_probs=9.5
Q ss_pred CCccccccCCCCCCCCCCC
Q 015730 34 NSSFSRLNAKAPEFVPTRN 52 (401)
Q Consensus 34 ~~~~~~~~~~~p~~~p~~~ 52 (401)
.+|++-.|..+++-|=+..
T Consensus 502 ~~s~~~~~~k~l~~v~~~g 520 (563)
T KOG1785|consen 502 QTSSSGVNIKELENVETSG 520 (563)
T ss_pred CCCCCCcchhhhhcccccC
Confidence 4455555555555554333
No 200
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.67 E-value=2.9e+02 Score=21.27 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=30.8
Q ss_pred cHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec-CHHHHHHHHHHhccc
Q 015730 301 CHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAVSHLHFM 370 (401)
Q Consensus 301 t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe-s~E~A~kAv~~ln~~ 370 (401)
+.-++-+.|+.+| .++.|.-+ | .+.. .+.=.-||+|+ ..+..++|+++|...
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSR-P-------------~~~~----~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESR-P-------------SRRN----GSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECC-C-------------CCCC----CceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 4678888999988 34555431 2 1111 01335678888 455667788887654
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=23.43 E-value=38 Score=28.09 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.0
Q ss_pred hhhhhheeccCCCCcccHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIF 309 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lF 309 (401)
....|+|.|+|||...++|+|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4567899999999999999998653
No 202
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.23 E-value=39 Score=26.37 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=18.3
Q ss_pred cceEEEEecCHHHHHHHHHHhcc
Q 015730 347 KLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+..+|.-|++.++|..++..+++
T Consensus 44 kL~aF~pF~s~~~ALe~~~aise 66 (67)
T PF08156_consen 44 KLKAFSPFKSAEEALENANAISE 66 (67)
T ss_pred hhhhccCCCCHHHHHHHHHHhhc
Confidence 44589999999999888877653
No 203
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.17 E-value=3.5e+02 Score=19.57 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=26.5
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEe
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~ 321 (401)
|+.|.|+-=..+...|++.+...--|..+.+-
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd 32 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD 32 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46677887778889999999998778888884
No 204
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.16 E-value=1.2e+02 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHhccCCeeEEEE
Q 015730 302 HQNLMKIFSAVGSVKTIRT 320 (401)
Q Consensus 302 ~edL~~lFs~fG~V~~Vri 320 (401)
.++|+++|+..|.|..+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999999987766
Done!