Query 015730
Match_columns 401
No_of_seqs 241 out of 1992
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 3.4E-36 1.2E-40 277.3 14.3 172 191-384 6-184 (193)
2 1s29_A LA protein; winged heli 99.9 6.7E-28 2.3E-32 198.2 4.7 88 192-279 5-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 1E-25 3.5E-30 187.8 3.5 87 191-279 8-94 (101)
4 3s8s_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 125.4 10.3 91 288-398 6-96 (110)
5 4fxv_A ELAV-like protein 1; RN 99.6 5E-15 1.7E-19 121.7 8.5 71 287-374 18-88 (99)
6 3r27_A HnRNP L, heterogeneous 99.6 9E-15 3.1E-19 121.7 8.8 77 287-386 20-96 (100)
7 2lxi_A RNA-binding protein 10; 99.6 2.5E-15 8.4E-20 121.5 5.2 78 289-384 2-80 (91)
8 1sjq_A Polypyrimidine tract-bi 99.5 2.5E-15 8.5E-20 126.2 4.5 75 287-384 15-89 (105)
9 1s79_A Lupus LA protein; RRM, 99.5 2E-14 6.8E-19 119.3 8.5 78 286-384 9-86 (103)
10 1x4d_A Matrin 3; structural ge 99.5 1E-14 3.5E-19 121.5 6.4 77 288-387 15-92 (102)
11 4f25_A Polyadenylate-binding p 99.5 1.3E-14 4.4E-19 121.9 6.9 68 288-374 5-72 (115)
12 3n9u_C Cleavage and polyadenyl 99.5 4.1E-14 1.4E-18 125.9 10.1 80 288-386 55-136 (156)
13 1wex_A Hypothetical protein (r 99.5 3E-14 1E-18 118.7 8.6 75 288-385 15-89 (104)
14 2cq4_A RNA binding motif prote 99.5 4.1E-14 1.4E-18 117.8 9.0 80 284-383 21-100 (114)
15 1p1t_A Cleavage stimulation fa 99.5 3.5E-14 1.2E-18 115.9 8.2 83 286-387 6-88 (104)
16 3bs9_A Nucleolysin TIA-1 isofo 99.5 4.4E-14 1.5E-18 111.4 8.5 78 287-383 5-82 (87)
17 1whw_A Hypothetical protein ri 99.5 4.9E-14 1.7E-18 114.2 8.9 81 287-386 7-87 (99)
18 3ns6_A Eukaryotic translation 99.5 2.7E-14 9.1E-19 117.0 7.4 79 288-384 6-90 (100)
19 2ad9_A Polypyrimidine tract-bi 99.5 2.7E-14 9.4E-19 122.3 7.4 75 288-385 31-105 (119)
20 2cq1_A PTB-like protein L; RRM 99.5 3.7E-14 1.2E-18 117.7 7.8 75 288-385 15-89 (101)
21 2dnz_A Probable RNA-binding pr 99.5 9.5E-14 3.3E-18 111.4 9.8 79 288-385 5-83 (95)
22 2x1f_A MRNA 3'-END-processing 99.5 7E-14 2.4E-18 113.0 8.8 79 288-385 2-80 (96)
23 2dgp_A Bruno-like 4, RNA bindi 99.5 5.8E-14 2E-18 115.1 8.0 82 286-384 11-93 (106)
24 3ucg_A Polyadenylate-binding p 99.5 8.2E-14 2.8E-18 110.3 8.6 72 285-374 3-74 (89)
25 3p5t_L Cleavage and polyadenyl 99.5 3.1E-14 1E-18 114.1 6.0 69 289-374 2-72 (90)
26 1x5s_A Cold-inducible RNA-bind 99.5 1.1E-13 3.6E-18 112.8 9.1 79 287-384 11-89 (102)
27 2lkz_A RNA-binding protein 5; 99.5 3.7E-14 1.3E-18 116.3 6.4 67 288-371 9-77 (95)
28 3md1_A Nuclear and cytoplasmic 99.5 1.1E-13 3.7E-18 108.3 8.7 77 289-384 2-78 (83)
29 4f02_A Polyadenylate-binding p 99.5 1.2E-13 4.2E-18 127.0 10.3 121 249-393 66-186 (213)
30 2e5h_A Zinc finger CCHC-type a 99.5 1.5E-13 5E-18 110.1 9.5 71 287-374 15-85 (94)
31 2cqc_A Arginine/serine-rich sp 99.5 1.5E-13 5.3E-18 110.0 9.5 71 287-374 14-84 (95)
32 1oo0_B CG8781-PA, drosophila Y 99.5 6.2E-14 2.1E-18 115.8 7.3 79 287-384 25-103 (110)
33 2dgo_A Cytotoxic granule-assoc 99.5 1.1E-13 3.6E-18 115.3 8.7 79 287-384 14-92 (115)
34 1x4e_A RNA binding motif, sing 99.5 5.8E-14 2E-18 110.6 6.7 70 288-374 5-74 (85)
35 1x4f_A Matrin 3; structural ge 99.5 3.1E-14 1E-18 120.7 5.4 75 288-385 25-100 (112)
36 1p27_B RNA-binding protein 8A; 99.5 1E-13 3.5E-18 113.6 8.4 79 287-384 22-100 (106)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.5 8.3E-14 2.9E-18 109.4 7.5 71 287-374 6-76 (85)
38 1x4h_A RNA-binding protein 28; 99.5 1.1E-13 3.7E-18 114.2 8.6 80 287-385 14-99 (111)
39 2dgs_A DAZ-associated protein 99.5 1.9E-13 6.4E-18 110.9 9.7 78 287-384 9-86 (99)
40 1u6f_A Tcubp1, RNA-binding pro 99.5 1E-13 3.6E-18 119.1 8.6 82 285-385 39-120 (139)
41 1x5u_A Splicing factor 3B subu 99.5 1.4E-13 4.6E-18 112.7 8.9 79 287-384 14-92 (105)
42 2cpz_A CUG triplet repeat RNA- 99.5 1E-13 3.6E-18 115.5 8.3 79 287-384 24-102 (115)
43 2do4_A Squamous cell carcinoma 99.5 1.2E-13 4.2E-18 112.1 8.4 78 287-384 16-93 (100)
44 2adc_A Polypyrimidine tract-bi 99.5 2.8E-13 9.5E-18 126.0 11.9 74 288-384 151-225 (229)
45 2cqb_A Peptidyl-prolyl CIS-tra 99.5 8.5E-14 2.9E-18 113.3 7.4 79 287-384 11-89 (102)
46 2cph_A RNA binding motif prote 99.5 1.4E-13 4.9E-18 112.7 8.7 79 287-384 14-94 (107)
47 2cq0_A Eukaryotic translation 99.5 9.5E-14 3.2E-18 113.4 7.5 79 287-384 14-92 (103)
48 2dnh_A Bruno-like 5, RNA bindi 99.5 7.1E-14 2.4E-18 114.4 6.5 81 287-385 14-95 (105)
49 2kxn_B Transformer-2 protein h 99.5 1.6E-13 5.4E-18 118.0 9.0 79 287-384 45-123 (129)
50 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.8E-13 6.3E-18 111.7 8.8 78 287-385 14-91 (103)
51 2ywk_A Putative RNA-binding pr 99.5 1.8E-13 6.3E-18 109.7 8.6 70 287-374 15-84 (95)
52 2rs2_A Musashi-1, RNA-binding 99.4 2.2E-13 7.6E-18 113.3 9.2 66 286-368 23-88 (109)
53 1x5t_A Splicing factor 3B subu 99.4 5.1E-14 1.7E-18 113.3 5.1 78 288-384 5-83 (96)
54 2cqd_A RNA-binding region cont 99.4 1.5E-13 5.3E-18 114.6 8.2 78 287-384 16-93 (116)
55 2jrs_A RNA-binding protein 39; 99.4 9.5E-14 3.2E-18 115.5 6.8 80 287-385 25-104 (108)
56 2fy1_A RNA-binding motif prote 99.4 2.3E-13 7.8E-18 114.6 9.1 78 287-384 6-83 (116)
57 2dnm_A SRP46 splicing factor; 99.4 1.4E-13 4.8E-18 112.4 7.6 79 287-384 12-90 (103)
58 2div_A TRNA selenocysteine ass 99.4 1.1E-13 3.7E-18 112.1 6.8 72 287-375 8-80 (99)
59 4a8x_A RNA-binding protein wit 99.4 1.2E-13 4.2E-18 108.9 6.8 72 287-374 3-74 (88)
60 2cpf_A RNA binding motif prote 99.4 1.4E-13 4.8E-18 111.2 7.0 82 287-384 4-85 (98)
61 2khc_A Testis-specific RNP-typ 99.4 1.5E-13 5.1E-18 114.9 7.4 71 287-374 39-109 (118)
62 2krb_A Eukaryotic translation 99.4 1.3E-13 4.4E-18 108.1 6.5 67 289-374 2-74 (81)
63 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-13 4.2E-18 106.5 6.0 63 289-368 1-63 (77)
64 2d9p_A Polyadenylate-binding p 99.4 1.5E-13 5E-18 112.3 6.7 78 287-385 14-91 (103)
65 2la6_A RNA-binding protein FUS 99.4 2.7E-13 9.3E-18 110.1 8.3 71 287-374 12-90 (99)
66 2cq3_A RNA-binding protein 9; 99.4 4.6E-13 1.6E-17 109.3 9.6 76 287-383 14-89 (103)
67 3lqv_A PRE-mRNA branch site pr 99.4 6.1E-13 2.1E-17 110.7 10.4 75 288-384 8-82 (115)
68 2wbr_A GW182, gawky, LD47780P; 99.4 5.6E-13 1.9E-17 108.6 9.7 72 288-384 7-78 (89)
69 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.8E-13 6.2E-18 120.1 7.3 79 287-384 38-116 (156)
70 2cpe_A RNA-binding protein EWS 99.4 1.9E-13 6.7E-18 113.4 7.0 80 286-384 13-100 (113)
71 1why_A Hypothetical protein ri 99.4 4.6E-13 1.6E-17 108.3 9.0 74 288-384 17-90 (97)
72 3ulh_A THO complex subunit 4; 99.4 3.8E-13 1.3E-17 110.3 8.5 70 287-374 28-97 (107)
73 3ex7_B RNA-binding protein 8A; 99.4 4.1E-13 1.4E-17 113.5 8.8 78 287-383 21-98 (126)
74 2jwn_A Embryonic polyadenylate 99.4 3.2E-13 1.1E-17 113.9 7.9 80 284-383 32-111 (124)
75 2err_A Ataxin-2-binding protei 99.4 2.7E-13 9.2E-18 112.7 7.2 78 286-384 27-104 (109)
76 2dis_A Unnamed protein product 99.4 2.9E-13 9.8E-18 111.5 7.2 80 287-385 7-90 (109)
77 1x4a_A Splicing factor, argini 99.4 5.7E-13 1.9E-17 110.0 9.0 76 287-384 21-96 (109)
78 3s7r_A Heterogeneous nuclear r 99.4 2.3E-13 7.8E-18 107.7 6.2 67 287-371 10-76 (87)
79 1wi8_A EIF-4B, eukaryotic tran 99.4 3.4E-13 1.2E-17 110.4 7.2 78 287-384 14-91 (104)
80 2dnq_A RNA-binding protein 4B; 99.4 7.2E-13 2.5E-17 105.7 8.8 71 287-384 7-77 (90)
81 2do0_A HnRNP M, heterogeneous 99.4 5.4E-13 1.9E-17 110.6 8.4 70 287-374 14-83 (114)
82 2jvr_A Nucleolar protein 3; RN 99.4 3.8E-13 1.3E-17 113.5 7.5 77 288-387 28-105 (111)
83 3q2s_C Cleavage and polyadenyl 99.4 1.9E-13 6.5E-18 128.6 6.3 80 287-385 67-148 (229)
84 1x4b_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 111.8 7.9 80 285-384 24-103 (116)
85 2dhg_A TRNA selenocysteine ass 99.4 5E-13 1.7E-17 109.1 7.8 70 287-374 8-79 (104)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.5E-13 1.5E-17 119.1 8.1 83 287-388 71-153 (165)
87 2dh8_A DAZ-associated protein 99.4 4.3E-13 1.5E-17 109.9 7.2 70 287-374 15-84 (105)
88 3md3_A Nuclear and cytoplasmic 99.4 9E-13 3.1E-17 113.9 9.6 78 287-383 86-163 (166)
89 2kt5_A RNA and export factor-b 99.4 9.2E-13 3.1E-17 111.3 9.4 78 287-384 34-111 (124)
90 2dgx_A KIAA0430 protein; RRM d 99.4 8.5E-13 2.9E-17 107.0 8.8 75 288-384 9-87 (96)
91 1whx_A Hypothetical protein ri 99.4 6.6E-13 2.3E-17 110.9 8.4 65 287-374 9-73 (111)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.4 4.1E-13 1.4E-17 109.6 7.0 70 286-374 17-87 (100)
93 2mss_A Protein (musashi1); RNA 99.4 4.1E-13 1.4E-17 103.3 6.6 67 290-374 1-67 (75)
94 1fxl_A Paraneoplastic encephal 99.4 1.6E-12 5.4E-17 112.5 11.0 78 287-381 87-164 (167)
95 2la4_A Nuclear and cytoplasmic 99.4 4.7E-13 1.6E-17 108.9 7.1 64 288-374 27-90 (101)
96 2ki2_A SS-DNA binding protein 99.4 2.2E-13 7.5E-18 108.4 5.0 68 289-374 2-69 (90)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 8.5E-13 2.9E-17 112.8 9.0 71 287-374 62-132 (140)
98 2ytc_A PRE-mRNA-splicing facto 99.4 7E-13 2.4E-17 104.2 7.8 65 287-374 11-76 (85)
99 2cpj_A Non-POU domain-containi 99.4 5.7E-13 2E-17 108.1 7.5 73 287-384 14-86 (99)
100 2cqg_A TDP-43, TAR DNA-binding 99.4 6.2E-13 2.1E-17 108.5 7.6 63 287-366 14-76 (103)
101 2dng_A Eukaryotic translation 99.4 6.6E-13 2.2E-17 108.5 7.8 77 287-384 14-90 (103)
102 2dgv_A HnRNP M, heterogeneous 99.4 8.6E-13 2.9E-17 105.2 8.3 69 287-374 7-75 (92)
103 1b7f_A Protein (SXL-lethal pro 99.4 1.5E-12 5.1E-17 113.2 10.4 79 287-382 88-166 (168)
104 2cpy_A RNA-binding protein 12; 99.4 4.5E-13 1.5E-17 112.1 6.8 68 287-373 14-82 (114)
105 2dgu_A Heterogeneous nuclear r 99.4 8.8E-13 3E-17 107.9 8.3 71 287-384 10-80 (103)
106 1x4g_A Nucleolysin TIAR; struc 99.4 9E-13 3.1E-17 108.9 8.4 74 287-385 24-97 (109)
107 2cpi_A CCR4-NOT transcription 99.4 5.3E-13 1.8E-17 111.1 7.0 82 287-384 14-98 (111)
108 2xnq_A Nuclear polyadenylated 99.4 1.1E-12 3.7E-17 106.9 8.6 71 287-384 21-92 (97)
109 2dgt_A RNA-binding protein 30; 99.4 1.1E-12 3.8E-17 105.0 8.5 71 287-384 9-79 (92)
110 2ek1_A RNA-binding protein 12; 99.4 2.9E-13 1E-17 108.6 5.1 70 288-374 15-84 (95)
111 1x4c_A Splicing factor, argini 99.4 1.4E-12 4.9E-17 107.8 9.4 63 288-374 15-77 (108)
112 2m2b_A RNA-binding protein 10; 99.4 4E-13 1.4E-17 115.1 6.2 66 287-370 22-89 (131)
113 2kn4_A Immunoglobulin G-bindin 99.4 1.1E-12 3.7E-17 114.9 8.9 79 287-384 69-147 (158)
114 2lea_A Serine/arginine-rich sp 99.4 3.2E-13 1.1E-17 116.9 5.5 80 286-384 45-124 (135)
115 2jvo_A Nucleolar protein 3; nu 99.4 7.7E-13 2.6E-17 110.1 7.5 74 285-385 28-101 (108)
116 2kvi_A Nuclear polyadenylated 99.4 1.4E-12 4.7E-17 105.6 8.8 63 287-374 9-72 (96)
117 2db1_A Heterogeneous nuclear r 99.4 5.2E-13 1.8E-17 112.8 6.5 68 287-373 16-86 (118)
118 1x5o_A RNA binding motif, sing 99.4 5.9E-13 2E-17 110.6 6.7 69 287-373 24-92 (114)
119 3nmr_A Cugbp ELAV-like family 99.4 1E-12 3.6E-17 114.7 8.6 78 287-382 94-172 (175)
120 2dnp_A RNA-binding protein 14; 99.4 1.2E-12 3.9E-17 104.5 8.0 71 287-384 8-78 (90)
121 4f02_A Polyadenylate-binding p 99.4 1.4E-12 4.8E-17 119.9 9.7 71 287-374 14-84 (213)
122 2cqp_A RNA-binding protein 12; 99.4 4.4E-13 1.5E-17 108.3 4.7 70 288-374 15-84 (98)
123 2hgl_A HNRPF protein, heteroge 99.3 8.5E-13 2.9E-17 115.2 6.6 69 287-374 43-114 (136)
124 2dnn_A RNA-binding protein 12; 99.3 2.6E-12 8.9E-17 107.9 9.4 67 287-373 15-81 (109)
125 2hvz_A Splicing factor, argini 99.3 1.5E-12 5.3E-17 105.8 7.7 72 289-384 1-72 (101)
126 2cq2_A Hypothetical protein LO 99.3 1.1E-12 3.7E-17 111.6 6.9 62 288-372 25-88 (114)
127 1iqt_A AUF1, heterogeneous nuc 99.3 9.1E-13 3.1E-17 101.1 5.8 64 290-371 1-64 (75)
128 1wg5_A Heterogeneous nuclear r 99.3 1.6E-12 5.5E-17 107.0 7.7 69 287-374 14-83 (104)
129 2nlw_A Eukaryotic translation 99.3 8.6E-13 2.9E-17 108.8 5.9 76 288-384 15-97 (105)
130 1fj7_A Nucleolin RBD1, protein 99.3 1.5E-13 5.2E-18 111.8 1.2 78 287-385 16-93 (101)
131 1wel_A RNA-binding protein 12; 99.3 4.2E-13 1.4E-17 113.7 4.0 70 287-374 24-93 (124)
132 2dnl_A Cytoplasmic polyadenyla 99.3 8.8E-13 3E-17 110.3 5.9 67 287-368 7-73 (114)
133 2a3j_A U1 small nuclear ribonu 99.3 2.2E-12 7.5E-17 111.2 8.5 78 288-387 29-110 (127)
134 2lmi_A GRSF-1, G-rich sequence 99.3 9.4E-13 3.2E-17 108.9 5.9 68 287-373 10-80 (107)
135 2e5j_A Methenyltetrahydrofolat 99.3 1.3E-12 4.6E-17 105.7 6.6 74 287-384 18-91 (97)
136 2cpd_A Apobec-1 stimulating pr 99.3 3.4E-12 1.2E-16 103.5 8.9 72 287-385 14-87 (99)
137 1wez_A HnRNP H', FTP-3, hetero 99.3 1.1E-12 3.8E-17 108.2 6.1 68 287-374 14-81 (102)
138 2qfj_A FBP-interacting repress 99.3 1.4E-12 4.9E-17 118.1 7.2 78 287-383 124-201 (216)
139 2i2y_A Fusion protein consists 99.3 6.1E-12 2.1E-16 109.6 10.8 75 286-384 71-145 (150)
140 3d2w_A TAR DNA-binding protein 99.3 3E-12 1E-16 103.0 8.0 71 287-383 10-80 (89)
141 2xs2_A Deleted in azoospermia- 99.3 3.9E-13 1.3E-17 109.5 2.9 61 287-365 8-68 (102)
142 2dgw_A Probable RNA-binding pr 99.3 1.8E-12 6.1E-17 103.5 6.7 76 287-384 9-84 (91)
143 2dha_A FLJ20171 protein; RRM d 99.3 1.4E-12 4.8E-17 111.9 6.4 91 287-400 22-116 (123)
144 3beg_B Splicing factor, argini 99.3 1.7E-12 6E-17 108.9 6.8 64 287-374 15-78 (115)
145 2hzc_A Splicing factor U2AF 65 99.3 3E-12 1E-16 100.8 7.5 64 287-374 5-79 (87)
146 2lcw_A RNA-binding protein FUS 99.0 1.5E-13 5.3E-18 114.8 0.0 80 286-384 5-92 (116)
147 1sjr_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 114.3 9.4 76 288-384 46-121 (164)
148 3nmr_A Cugbp ELAV-like family 99.3 2.2E-12 7.5E-17 112.7 7.2 72 287-373 2-73 (175)
149 2g4b_A Splicing factor U2AF 65 99.3 5.9E-12 2E-16 110.0 9.9 104 249-374 60-163 (172)
150 1l3k_A Heterogeneous nuclear r 99.3 6.5E-12 2.2E-16 112.0 9.9 79 287-385 103-181 (196)
151 1nu4_A U1A RNA binding domain; 99.3 2.7E-12 9.1E-17 103.3 6.6 78 287-386 7-88 (97)
152 2cqh_A IGF-II mRNA-binding pro 99.3 2.1E-12 7E-17 103.5 5.9 72 287-384 7-80 (93)
153 1fxl_A Paraneoplastic encephal 99.3 4.7E-12 1.6E-16 109.5 8.6 70 288-374 2-71 (167)
154 2qfj_A FBP-interacting repress 99.3 1.1E-11 3.6E-16 112.3 11.3 72 286-374 26-97 (216)
155 2fc9_A NCL protein; structure 99.3 4.1E-12 1.4E-16 103.3 7.2 75 287-384 14-88 (101)
156 2cjk_A Nuclear polyadenylated 99.3 7.4E-12 2.5E-16 108.9 9.4 109 249-383 54-162 (167)
157 1wf1_A RNA-binding protein RAL 99.3 5.8E-12 2E-16 104.2 7.5 70 288-384 27-97 (110)
158 2hgn_A Heterogeneous nuclear r 99.3 2.2E-12 7.6E-17 113.0 5.3 68 287-374 45-112 (139)
159 3md3_A Nuclear and cytoplasmic 99.3 5.6E-12 1.9E-16 108.9 7.7 68 289-374 1-68 (166)
160 2f3j_A RNA and export factor b 99.3 8.2E-12 2.8E-16 113.0 8.8 69 288-374 88-156 (177)
161 3tyt_A Heterogeneous nuclear r 99.3 7.4E-12 2.5E-16 115.6 8.6 73 287-383 3-76 (205)
162 1b7f_A Protein (SXL-lethal pro 99.3 6E-12 2E-16 109.4 7.5 70 288-374 3-72 (168)
163 2cjk_A Nuclear polyadenylated 99.3 5.5E-12 1.9E-16 109.7 7.2 63 287-366 2-64 (167)
164 2e44_A Insulin-like growth fac 99.3 9.1E-12 3.1E-16 100.1 7.9 74 288-384 15-89 (96)
165 1fjc_A Nucleolin RBD2, protein 99.3 1.8E-12 6.2E-17 104.2 3.7 75 286-384 14-88 (96)
166 1x5p_A Negative elongation fac 99.3 1.4E-11 4.8E-16 99.6 8.8 71 287-384 14-84 (97)
167 3pgw_A U1-A; protein-RNA compl 99.3 7.4E-12 2.5E-16 118.9 8.4 74 287-383 206-279 (282)
168 3zzy_A Polypyrimidine tract-bi 99.3 1.3E-11 4.4E-16 107.3 9.1 64 289-374 29-93 (130)
169 1fje_B Nucleolin RBD12, protei 99.3 2.4E-11 8.3E-16 106.8 10.8 109 249-384 63-171 (175)
170 2cpx_A Hypothetical protein FL 99.3 6.7E-12 2.3E-16 104.2 6.7 75 287-384 24-102 (115)
171 2hgm_A HNRPF protein, heteroge 99.3 3.4E-12 1.2E-16 110.1 5.0 61 288-367 42-104 (126)
172 2e5i_A Heterogeneous nuclear r 99.3 2E-11 7E-16 105.0 9.8 63 289-374 26-89 (124)
173 2fc8_A NCL protein; structure 99.2 6.9E-12 2.4E-16 101.9 6.4 77 287-385 14-90 (102)
174 1l3k_A Heterogeneous nuclear r 99.2 1.3E-11 4.3E-16 110.2 8.6 63 287-366 12-74 (196)
175 2yh0_A Splicing factor U2AF 65 99.2 1.4E-11 4.7E-16 110.1 8.6 78 287-383 113-190 (198)
176 3pgw_S U1-70K; protein-RNA com 99.2 1.1E-11 3.8E-16 127.1 9.1 79 287-384 101-179 (437)
177 2ghp_A U4/U6 snRNA-associated 99.2 2.9E-11 9.8E-16 115.3 10.8 79 287-385 209-289 (292)
178 1wg1_A KIAA1579 protein, homol 99.2 1.2E-11 4.2E-16 98.4 6.9 70 288-383 5-74 (88)
179 1wf0_A TDP-43, TAR DNA-binding 99.2 9.3E-12 3.2E-16 98.8 6.2 55 287-363 4-58 (88)
180 3smz_A Protein raver-1, ribonu 99.2 3.3E-11 1.1E-15 114.5 9.4 88 286-393 182-270 (284)
181 3u1l_A PRE-mRNA-splicing facto 99.2 2.4E-11 8.1E-16 115.8 8.3 78 287-387 133-229 (240)
182 2e5g_A U6 snRNA-specific termi 99.2 2.4E-11 8.2E-16 97.7 7.1 64 288-374 8-71 (94)
183 3egn_A RNA-binding protein 40; 99.2 2.1E-11 7.2E-16 105.4 6.3 76 287-384 44-127 (143)
184 1qm9_A Polypyrimidine tract-bi 99.2 1E-10 3.5E-15 105.1 10.7 64 288-373 120-184 (198)
185 3tyt_A Heterogeneous nuclear r 99.2 2.6E-11 8.7E-16 112.0 6.8 77 288-383 123-203 (205)
186 2bz2_A Negative elongation fac 99.2 4E-11 1.4E-15 101.9 7.5 72 287-385 38-109 (121)
187 2j8a_A Histone-lysine N-methyl 99.2 3.4E-11 1.2E-15 104.8 6.9 78 289-385 3-94 (136)
188 3sde_A Paraspeckle component 1 99.2 8E-11 2.7E-15 111.5 9.8 68 288-373 96-163 (261)
189 2adc_A Polypyrimidine tract-bi 99.2 5.1E-11 1.8E-15 110.6 8.1 66 287-374 33-99 (229)
190 1qm9_A Polypyrimidine tract-bi 99.1 3.5E-11 1.2E-15 108.2 6.1 66 287-374 2-68 (198)
191 3smz_A Protein raver-1, ribonu 99.1 3.8E-10 1.3E-14 107.1 12.3 70 288-374 95-164 (284)
192 3pgw_A U1-A; protein-RNA compl 99.1 1.1E-10 3.7E-15 110.8 8.5 76 287-384 8-87 (282)
193 3sde_A Paraspeckle component 1 99.1 1.2E-10 4.2E-15 110.3 8.8 65 287-374 21-85 (261)
194 2pe8_A Splicing factor 45; RRM 99.1 1.9E-10 6.6E-15 95.7 8.2 80 287-384 7-91 (105)
195 3tht_A Alkylated DNA repair pr 99.1 1.5E-10 5.2E-15 115.5 7.6 63 288-373 18-82 (345)
196 2g4b_A Splicing factor U2AF 65 99.0 3.3E-10 1.1E-14 98.8 8.0 64 287-374 3-77 (172)
197 1owx_A Lupus LA protein, SS-B, 99.0 6.3E-10 2.2E-14 95.5 8.8 91 287-400 17-111 (121)
198 2diu_A KIAA0430 protein; struc 99.0 4.3E-10 1.5E-14 92.7 6.1 66 290-384 11-81 (96)
199 2ghp_A U4/U6 snRNA-associated 99.0 8.6E-10 2.9E-14 105.1 9.2 69 288-374 117-186 (292)
200 2yh0_A Splicing factor U2AF 65 99.0 5.7E-10 2E-14 99.5 6.4 64 287-374 3-77 (198)
201 2dit_A HIV TAT specific factor 98.9 1.6E-09 5.6E-14 90.1 8.1 73 288-383 15-98 (112)
202 3v4m_A Splicing factor U2AF 65 98.9 1.5E-09 5.1E-14 90.2 7.0 80 288-384 5-94 (105)
203 1fje_B Nucleolin RBD12, protei 98.9 3E-10 1E-14 99.7 2.8 69 287-374 12-80 (175)
204 2d9o_A DNAJ (HSP40) homolog, s 98.9 5.8E-09 2E-13 86.3 8.6 50 298-369 27-76 (100)
205 1jmt_A Splicing factor U2AF 35 98.9 1.4E-09 4.8E-14 90.1 4.8 54 303-374 41-95 (104)
206 3ue2_A Poly(U)-binding-splicin 98.8 5.6E-09 1.9E-13 88.8 6.1 83 287-384 19-106 (118)
207 3s6e_A RNA-binding protein 39; 98.6 3.9E-08 1.3E-12 83.1 6.6 60 302-384 31-90 (114)
208 3dxb_A Thioredoxin N-terminall 98.1 4E-06 1.4E-10 77.1 6.9 71 300-385 141-211 (222)
209 2dnr_A Synaptojanin-1; RRM dom 98.0 8.5E-06 2.9E-10 66.4 5.9 55 302-384 29-83 (91)
210 1ufw_A Synaptojanin 2; RNP dom 97.6 4.9E-05 1.7E-09 62.3 5.1 61 288-374 15-84 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.1 0.0025 8.4E-08 53.7 8.9 65 287-374 20-89 (117)
212 1whv_A Poly(A)-specific ribonu 96.1 0.0071 2.4E-07 49.8 5.4 53 290-368 18-70 (100)
213 2dhx_A Poly (ADP-ribose) polym 96.1 0.013 4.4E-07 48.7 6.8 54 288-366 8-66 (104)
214 3pq1_A Poly(A) RNA polymerase; 95.8 0.0038 1.3E-07 64.4 3.0 57 286-365 51-107 (464)
215 3ctr_A Poly(A)-specific ribonu 95.8 0.0038 1.3E-07 51.5 2.1 53 290-368 8-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 95.2 0.052 1.8E-06 46.1 7.3 61 287-372 23-83 (119)
217 1uw4_A UPF3X; nonsense mediate 95.0 0.049 1.7E-06 44.1 6.3 70 290-374 3-72 (91)
218 2kn4_A Immunoglobulin G-bindin 93.1 0.068 2.3E-06 45.7 4.0 23 347-369 13-35 (158)
219 1wey_A Calcipressin 1; structu 93.0 0.15 5.1E-06 42.3 5.6 64 289-375 6-74 (104)
220 2l08_A Regulator of nonsense t 92.2 0.28 9.7E-06 40.1 6.2 72 288-374 9-80 (97)
221 3p3d_A Nucleoporin 53; structu 86.0 0.52 1.8E-05 40.6 3.4 77 289-371 8-85 (132)
222 3d45_A Poly(A)-specific ribonu 85.0 1.3 4.5E-05 45.9 6.6 55 291-370 442-496 (507)
223 2l4h_A Calcium and integrin-bi 83.2 0.27 9.1E-06 44.2 0.4 46 192-239 30-83 (214)
224 2i2y_A Fusion protein consists 82.7 0.45 1.5E-05 40.3 1.6 24 347-370 13-37 (150)
225 3htx_A HEN1; HEN1, small RNA m 80.5 0.78 2.7E-05 50.8 2.9 89 192-281 102-209 (950)
226 1jh4_B PAIP1, polyadenylate-bi 78.4 0.94 3.2E-05 28.0 1.5 17 37-53 3-19 (26)
227 4f25_A Polyadenylate-binding p 78.3 0.9 3.1E-05 36.9 2.0 18 287-304 96-113 (115)
228 3fwy_A Light-independent proto 76.8 0.5 1.7E-05 45.8 0.0 7 189-195 55-61 (314)
229 1d1d_A Protein (capsid protein 66.2 1.9 6.5E-05 41.2 1.3 24 188-211 31-56 (262)
230 3tla_A MCCF; serine protease, 61.3 1.7 5.9E-05 43.3 0.0 10 196-205 61-70 (371)
231 1wfx_A Probable RNA 2'-phospho 60.9 3.5 0.00012 37.3 2.0 50 224-276 22-75 (186)
232 3uau_A JLPA, surface-exposed l 57.1 2.2 7.6E-05 40.9 0.0 6 193-198 29-34 (379)
233 2yjp_A Putative ABC transporte 51.5 3.1 0.00011 38.2 0.0 22 286-309 162-183 (291)
234 4faj_A PRGZ; substrate binding 49.0 3.6 0.00012 39.9 0.0 13 302-314 216-228 (564)
235 1i4w_A Mitochondrial replicati 48.6 7.4 0.00025 38.4 2.2 23 289-311 143-165 (353)
236 2es4_D Lipase chaperone; prote 46.1 4.3 0.00015 40.0 0.0 11 201-211 85-95 (332)
237 3jrx_A Acetyl-COA carboxylase 44.4 4.7 0.00016 42.5 0.0 15 38-52 447-463 (587)
238 4ec6_A Putative uncharacterize 44.1 3.4 0.00012 36.5 -0.9 15 198-212 58-72 (161)
239 3cio_A ETK, tyrosine-protein k 42.4 5.3 0.00018 38.0 0.0 15 355-369 249-263 (299)
240 3na8_A Putative dihydrodipicol 42.3 27 0.00092 33.6 5.1 32 289-320 151-186 (315)
241 1jr2_A Uroporphyrinogen-III sy 41.7 5.5 0.00019 37.4 0.0 21 349-369 211-231 (286)
242 3dfz_A SIRC, precorrin-2 dehyd 37.9 6.6 0.00023 36.3 -0.1 10 388-397 190-199 (223)
243 2px7_A 2-C-methyl-D-erythritol 36.6 7.4 0.00025 35.2 0.0 9 301-309 120-128 (236)
244 2c0d_A Thioredoxin peroxidase 36.5 7.4 0.00025 35.2 0.0 13 356-368 171-183 (221)
245 2yln_A Putative ABC transporte 36.3 7.5 0.00026 35.5 0.0 10 358-367 212-221 (283)
246 1uoz_A Putative cellulase; hyd 35.4 7.9 0.00027 37.8 0.0 17 250-266 122-138 (315)
247 3odm_A Pepcase, PEPC, phosphoe 35.3 7.9 0.00027 40.5 0.0 15 357-371 302-316 (560)
248 3fia_A Intersectin-1; EH 1 dom 34.8 6.3 0.00022 33.1 -0.7 9 226-234 77-85 (121)
249 3tcm_A Alanine aminotransferas 34.7 8.2 0.00028 39.0 0.0 21 301-321 255-278 (500)
250 4axs_A Carbamate kinase; oxido 34.2 8.5 0.00029 37.7 0.0 7 303-309 194-200 (332)
251 1wue_A Mandelate racemase/muco 34.2 8.5 0.00029 37.9 0.0 10 301-310 263-272 (386)
252 1svj_A Potassium-transporting 33.5 8.8 0.0003 33.4 0.0 15 192-206 32-46 (156)
253 1wuf_A Hypothetical protein LI 33.5 8.8 0.0003 37.9 0.0 10 155-164 12-21 (393)
254 2i7a_A Calpain 13; calcium-dep 33.4 28 0.00095 29.9 3.3 20 219-238 50-69 (174)
255 3pm8_A PFCDPK2, calcium-depend 33.4 6.5 0.00022 34.2 -0.9 22 219-240 61-82 (197)
256 3t21_A Endo-type membrane-boun 33.0 9.1 0.00031 34.8 0.0 8 305-312 124-131 (206)
257 4eyt_A Telomerase associated p 32.9 1.9E+02 0.0066 23.2 10.1 82 287-393 11-96 (129)
258 3fry_A Probable copper-exporti 32.9 88 0.003 22.1 5.5 57 288-368 6-62 (73)
259 3b9f_I Protein C inhibitor; mi 32.8 9.2 0.00032 38.0 0.0 6 199-204 78-83 (395)
260 3k9f_C DNA topoisomerase 4 sub 32.7 9.3 0.00032 36.5 0.0 12 386-397 245-256 (268)
261 2c07_A 3-oxoacyl-(acyl-carrier 32.6 9.3 0.00032 35.3 0.0 14 354-367 251-264 (285)
262 4b1m_A Levanase; hydrolase, CB 32.4 9.4 0.00032 33.7 0.0 8 313-320 131-138 (185)
263 4faj_A PRGZ; substrate binding 32.3 9.5 0.00032 37.0 0.0 11 196-206 82-92 (564)
264 2yln_A Putative ABC transporte 32.3 9.5 0.00033 34.8 0.0 8 195-202 84-91 (283)
265 2lfv_A Protein DAMX; cell divi 38.4 9.6 0.00033 31.3 0.0 30 353-384 70-99 (106)
266 2l4h_A Calcium and integrin-bi 32.1 9.6 0.00033 33.8 0.0 20 219-238 95-115 (214)
267 3pnr_B Pbicp-C; immunoglobulin 31.0 10 0.00035 33.4 0.0 8 348-355 159-166 (187)
268 4e8u_A Putative uncharacterize 30.5 54 0.0019 29.2 4.6 48 290-357 14-72 (172)
269 2zyd_A 6-phosphogluconate dehy 30.4 11 0.00037 38.6 0.0 23 290-314 151-173 (480)
270 2axq_A Saccharopine dehydrogen 30.3 11 0.00037 38.5 0.0 6 360-365 274-279 (467)
271 3cio_A ETK, tyrosine-protein k 30.3 11 0.00037 35.8 0.0 9 260-268 134-142 (299)
272 4g2c_A DYP2; DYE peroxidase, o 30.1 11 0.00037 39.0 0.0 12 236-247 117-128 (493)
273 2xci_A KDO-transferase, 3-deox 29.4 11 0.00039 36.4 0.0 18 303-321 162-179 (374)
274 3fwy_A Light-independent proto 29.3 11 0.00039 36.1 0.0 9 305-313 236-244 (314)
275 2oar_A Large-conductance mecha 29.2 12 0.00039 33.6 0.0 10 302-311 137-146 (174)
276 2d2a_A SUFA protein; iron-sulf 29.2 12 0.00039 32.4 0.0 16 191-206 41-56 (145)
277 4e4j_A Arginine deiminase; L-a 29.0 12 0.0004 37.7 0.0 11 303-313 264-274 (433)
278 3etc_A AMP-binding protein; ad 29.0 12 0.0004 38.6 0.0 8 231-238 138-145 (580)
279 2qrj_A Saccharopine dehydrogen 28.6 12 0.00041 37.6 0.0 12 297-308 278-289 (394)
280 1k8w_A TRNA pseudouridine synt 28.4 12 0.00042 36.7 0.0 16 189-204 33-48 (327)
281 1jr2_A Uroporphyrinogen-III sy 28.3 12 0.00042 34.9 0.0 16 296-311 137-152 (286)
282 2l72_A Tgadf, actin depolymeri 28.0 12 0.00043 31.8 0.0 11 192-202 27-37 (139)
283 1wuf_A Hypothetical protein LI 27.8 12 0.00041 36.9 -0.1 11 301-311 263-273 (393)
284 1qwz_A NPQTN specific sortase 27.7 17 0.00057 33.8 0.8 16 352-367 175-190 (235)
285 2es4_D Lipase chaperone; prote 27.2 13 0.00045 36.4 0.0 12 388-399 300-311 (332)
286 3ipq_A Oxysterols receptor LXR 26.6 19 0.00065 33.8 1.0 20 189-208 38-57 (283)
287 2c0d_A Thioredoxin peroxidase 26.0 14 0.00049 33.3 0.0 6 262-267 93-98 (221)
288 2px7_A 2-C-methyl-D-erythritol 26.0 14 0.00049 33.3 0.0 7 303-309 125-131 (236)
289 2apo_A Probable tRNA pseudouri 25.7 15 0.0005 36.5 0.0 15 191-205 76-90 (357)
290 4axs_A Carbamate kinase; oxido 25.6 15 0.0005 36.0 0.0 10 356-365 273-282 (332)
291 2r5o_A Putative ATP binding co 25.3 15 0.00051 32.4 0.0 9 312-320 120-128 (188)
292 3tut_A RNA 3'-terminal phospha 25.3 15 0.00051 36.5 0.0 27 295-321 145-175 (358)
293 4fl4_A Glycoside hydrolase fam 25.1 15 0.00052 29.2 0.0 14 189-202 27-40 (88)
294 3b0g_A NII3, nitrite reductase 25.0 15 0.00052 38.6 0.0 20 348-367 302-321 (591)
295 3dfz_A SIRC, precorrin-2 dehyd 24.9 15 0.00053 33.8 0.0 6 391-396 212-217 (223)
296 1wue_A Mandelate racemase/muco 24.7 19 0.00063 35.4 0.5 9 156-164 13-21 (386)
297 3dxs_X Copper-transporting ATP 24.4 1.8E+02 0.0061 20.1 6.5 57 289-368 4-64 (74)
298 2oxn_A Beta-hexosaminidase; TI 24.3 18 0.00061 35.5 0.3 10 130-141 331-340 (340)
299 2bu3_A ALR0975 protein; phytoc 24.1 16 0.00055 34.6 0.0 12 199-210 70-81 (254)
300 3lqv_A PRE-mRNA branch site pr 23.7 14 0.00049 29.1 -0.4 21 294-314 89-109 (115)
301 4e4j_A Arginine deiminase; L-a 23.7 17 0.00057 36.6 0.0 9 347-355 247-255 (433)
302 3ied_A Heat shock protein; HSP 23.4 52 0.0018 31.4 3.3 20 206-229 42-61 (272)
303 4g2c_A DYP2; DYE peroxidase, o 23.2 17 0.00059 37.5 0.0 8 160-167 18-25 (493)
304 1svj_A Potassium-transporting 23.1 17 0.0006 31.5 0.0 10 347-356 143-152 (156)
305 1qwz_A NPQTN specific sortase 23.0 24 0.00081 32.8 0.9 7 229-235 63-69 (235)
306 3ts2_A Protein LIN-28 homolog 23.0 15 0.00051 31.7 -0.5 28 303-355 2-29 (148)
307 3oc3_A Helicase MOT1, MOT1; re 22.6 18 0.00062 38.7 0.0 15 194-208 46-60 (800)
308 3lpe_A Putative transcription 22.1 1.2E+02 0.004 23.7 4.7 25 347-371 50-74 (92)
309 3a4u_B Multiple coagulation fa 22.0 19 0.00065 29.8 0.0 8 227-234 39-46 (143)
310 3qx3_A DNA topoisomerase 2-bet 21.7 19 0.00066 39.2 0.0 10 130-141 794-803 (803)
311 2zyd_A 6-phosphogluconate dehy 21.6 20 0.00067 36.6 0.0 7 303-309 225-231 (480)
312 3u61_A DNA polymerase accessor 21.5 20 0.00067 32.8 0.0 10 130-141 190-199 (199)
313 3pnr_B Pbicp-C; immunoglobulin 21.1 20 0.00069 31.5 0.0 6 227-232 63-68 (187)
314 2pi2_E Replication protein A 1 20.8 21 0.00071 30.8 0.0 25 347-371 101-131 (142)
315 3q8g_A CRAL-TRIO domain-contai 20.6 48 0.0016 31.7 2.5 10 217-226 61-70 (320)
316 3k9f_C DNA topoisomerase 4 sub 20.5 21 0.00072 34.0 0.0 8 251-258 98-105 (268)
317 3odm_A Pepcase, PEPC, phosphoe 20.4 21 0.00073 37.3 0.0 9 214-222 63-71 (560)
318 1sg7_A Putative cation transpo 20.4 40 0.0014 27.3 1.6 10 189-198 25-34 (96)
319 4amu_A Ornithine carbamoyltran 20.4 21 0.00073 35.4 0.0 32 290-324 183-214 (365)
320 1nwa_A Peptide methionine sulf 20.3 22 0.00074 32.6 0.0 22 290-311 74-95 (203)
321 2qrj_A Saccharopine dehydrogen 20.0 22 0.00075 35.7 0.0 10 252-261 127-136 (394)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=3.4e-36 Score=277.35 Aligned_cols=172 Identities=26% Similarity=0.398 Sum_probs=145.0
Q ss_pred CCCChHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcC--cceEEecc
Q 015730 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSED 268 (401)
Q Consensus 191 ~~~~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S--~~LEVsed 268 (401)
....+++..+|++||||||||+||.+|.||+++|.++ +|||+|++|++|+||+.++.+.+.|.+||+.| ..|+++++
T Consensus 6 ~~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed 84 (193)
T 2voo_A 6 NEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 84 (193)
T ss_dssp ---CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTT
T ss_pred cCCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecc
Confidence 4456788999999999999999999999999998765 99999999999999999999999999999999 89999999
Q ss_pred ccccccCC--CCCcc---hhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCcc
Q 015730 269 GKKIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGML 343 (401)
Q Consensus 269 g~kVRRk~--Pl~e~---~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~ 343 (401)
+.+|||.. |+++. ...+...++|||+|||.++|+++|+++|++||.|..|+|+++.+ +
T Consensus 85 ~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-----------~------ 147 (193)
T 2voo_A 85 KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K------ 147 (193)
T ss_dssp SSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-----------C------
T ss_pred cceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-----------C------
Confidence 99999984 44432 23456789999999999999999999999999999999987532 1
Q ss_pred ccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEeec
Q 015730 344 FSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 344 ~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
..+|||||+|++.++|++|++.++. . +.+..+.++++
T Consensus 148 -~~kG~aFVeF~~~e~A~~A~~~~~~-~--~~Gr~l~V~~~ 184 (193)
T 2voo_A 148 -AFKGSIFVVFDSIESAKKFVETPGQ-K--YKETDLLILFK 184 (193)
T ss_dssp -CEEEEEEEEESSHHHHHHHHHCTTC-E--ETTEECEEEET
T ss_pred -CcccEEEEEECCHHHHHHHHHhCCC-e--ECCEEEEEEEh
Confidence 1389999999999999999987764 2 22344555544
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.94 E-value=6.7e-28 Score=198.15 Aligned_cols=88 Identities=35% Similarity=0.630 Sum_probs=85.4
Q ss_pred CCChHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEeccccc
Q 015730 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKK 271 (401)
Q Consensus 192 ~~~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~k 271 (401)
.+++++.++|++||||||||+||.+|.||+++|.++.+|||+|++|++|+|||+++.+.+.|++||+.|..|||++||++
T Consensus 5 ~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~ 84 (92)
T 1s29_A 5 PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLM 84 (92)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSE
T ss_pred CCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 015730 272 IKRQNPLT 279 (401)
Q Consensus 272 VRRk~Pl~ 279 (401)
|||+.||+
T Consensus 85 VRR~~PlP 92 (92)
T 1s29_A 85 VRRRDPLP 92 (92)
T ss_dssp EEESSCCC
T ss_pred EeCCCCCC
Confidence 99999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.91 E-value=1e-25 Score=187.82 Aligned_cols=87 Identities=28% Similarity=0.415 Sum_probs=81.1
Q ss_pred CCCChHHHHHHhhcccccccCCCcCcCHHHHHhhccCCCCceecccccchhhHHhhhcCHHHHHHhhhcCcceEEecccc
Q 015730 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (401)
Q Consensus 191 ~~~~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~~~eG~Vpi~~i~sFkKvK~lt~d~e~I~eALk~S~~LEVsedg~ 270 (401)
...+++++++|++||||||||+||.+|.||+++| +.+|||+|++|++|+|||+++.+.+.|++||+.|..|||++||+
T Consensus 8 ~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~ 85 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGE 85 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSS
T ss_pred CCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCC
Confidence 3456788899999999999999999999999995 78999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 015730 271 KIKRQNPLT 279 (401)
Q Consensus 271 kVRRk~Pl~ 279 (401)
+|||+.+.+
T Consensus 86 kVRr~~~~~ 94 (101)
T 2cqk_A 86 KVRPSHKRC 94 (101)
T ss_dssp EEEECCSCC
T ss_pred eeeeCCCCC
Confidence 999997654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=125.44 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=73.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+||+.++++++|+++|++||.|..|+|+++..++. .+|||||+|++.++|++|++.|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK-----------------HLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc-----------------eeeEEEEEECCHHHHHHHHHHh
Confidence 67999999999999999999999999999999988754332 3899999999999999999999
Q ss_pred cccccccccceEEEeecccCHHHHHHHHHHH
Q 015730 368 HFMIMLFFFSAFCLMFVTQTNEIRTSFLADC 398 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~~~~e~R~~~~~~~ 398 (401)
|+..+.. ..+.+.+. .+.+.|+++++..
T Consensus 69 ng~~~~g--r~i~V~~a-~~~~~~~~~~~~~ 96 (110)
T 3s8s_A 69 HLTSVMG--NIIHAQLD-IKGQQRMKYYELI 96 (110)
T ss_dssp TTCEETT--EECEEEEC-STTHHHHHHHHHH
T ss_pred CCCEECC--eEEEEEEC-CCCcHHHHHHHHh
Confidence 9887665 34555544 4444555555543
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=121.72 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=62.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.++|||+|||.++|+++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH-----------------SLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc-----------------ccccEEEEECCHHHHHHHHHH
Confidence 467899999999999999999999999999999987654332 389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 81 lng~~~~g 88 (99)
T 4fxv_A 81 LNGLRLQS 88 (99)
T ss_dssp HTTCEETT
T ss_pred hCCCEECC
Confidence 99877554
No 6
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=9e-15 Score=121.74 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=65.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.+++|||+|||.++|+++|+++|++||.|++|++++ .||||||||++.++|++|++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999863 178999999999999999999
Q ss_pred hcccccccccceEEEeeccc
Q 015730 367 LHFMIMLFFFSAFCLMFVTQ 386 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~ 386 (401)
|++......+..+.+.+...
T Consensus 77 ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp HHHSCEEETTEEEEEEECSC
T ss_pred hcCCCceeCCcEEEEEeccc
Confidence 99876544456677666543
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=121.49 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=63.8
Q ss_pred hheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
++|||+|||.++|+++|+++|++|| .|..|+|++++.++. ++|||||+|++.++|++|++.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~-----------------~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ-----------------SRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC-----------------CSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHHhc
Confidence 5899999999999999999999999 899999987654332 3899999999999999999988
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
++..... +..+.+.+.
T Consensus 65 ~~~~~~~-gr~i~V~~a 80 (91)
T 2lxi_A 65 QHSLNIL-GQKVSMHYS 80 (91)
T ss_dssp TTEEEET-TEEEEEECC
T ss_pred CCCeEEC-CEEEEEEEc
Confidence 6554333 245655554
No 8
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-15 Score=126.15 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=61.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||+++|+++|+++|++||.|+.|+|+++ ||||||||++.++|++|++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 3689999999999999999999999999999999742 78999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++....+.+..+.+.+.
T Consensus 72 l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp HTTSCCEETTEECCBCCC
T ss_pred hccCCceECCEEEEEEEc
Confidence 975422222345555544
No 9
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=119.27 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=63.9
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++|+++|+++|+.||.|..|+|++++. + ..+|||||+|++.++|++|++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g-----------------~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-----------------AFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-T-----------------SCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-C-----------------CCccEEEEEECCHHHHHHHHH
Confidence 4579999999999999999999999999999999987642 1 138999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
+++..+.. ..+.+.++
T Consensus 71 -~~~~~~~g--r~l~V~~~ 86 (103)
T 1s79_A 71 -TPGQKYKE--TDLLILFK 86 (103)
T ss_dssp -SSCCCCTT--TTCEEEEH
T ss_pred -cCCCEECC--EEEEEEEc
Confidence 77655433 44555543
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=121.53 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred hhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||+ ++|+++|+++|+.||.|..|+|+++ +|||||||++.++|++|++.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 68999999999 9999999999999999999999632 68999999999999999999
Q ss_pred hcccccccccceEEEeecccC
Q 015730 367 LHFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~ 387 (401)
|++....+.+..+.+.+...+
T Consensus 72 l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 72 YTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHSCCEETTEECEEEEECCC
T ss_pred HcCCCceECCcEEEEEECCCC
Confidence 987654444455666655433
No 11
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.52 E-value=1.3e-14 Score=121.86 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=60.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|||+|||.++|+++|+++|++||.|..|+|++++. ..||||||+|++.++|++|++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999999986531 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++..+..
T Consensus 66 ~~~~~~g 72 (115)
T 4f25_A 66 NGMLLND 72 (115)
T ss_dssp TTCEETT
T ss_pred CCCEECC
Confidence 9887655
No 12
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=125.87 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=66.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC--CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++|||+|||.++|+++|+++|+.|| .|..|+|++++.++. .+|||||+|++.++|++||+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~A~~Ai~ 117 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ-----------------SKGYAEVVVASENSVHKLLE 117 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 57999999999999999999999999 999999987754332 38999999999999999999
Q ss_pred HhcccccccccceEEEeeccc
Q 015730 366 HLHFMIMLFFFSAFCLMFVTQ 386 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~~~ 386 (401)
.||+..+.. ..+.+.+...
T Consensus 118 ~lng~~~~G--r~l~V~~a~~ 136 (156)
T 3n9u_C 118 LLPGKVLNG--EKVDVRPATR 136 (156)
T ss_dssp HSTTCEETT--EECEEEECCH
T ss_pred HcCCCEECC--eEeEEEEcCC
Confidence 999887654 3455554443
No 13
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=118.66 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=63.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..|+|++ .||||||||++.++|++|++.|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 68999999999999999999999999999999863 1789999999999999999999
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
++......+..+.+.+..
T Consensus 72 ~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 72 ADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp HHSCCBSSSSBCEEEECS
T ss_pred ccCCceECCEEEEEEEcc
Confidence 865444434556666544
No 14
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=117.83 Aligned_cols=80 Identities=26% Similarity=0.276 Sum_probs=66.1
Q ss_pred hhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 284 ~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
.+...++|||+|||.++++++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR-----------------SKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS-----------------CCCCEEEEESCGGGHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc-----------------cCcEEEEEeCcHHHHHHH
Confidence 445689999999999999999999999999999999987643221 389999999999999999
Q ss_pred HHHhcccccccccceEEEee
Q 015730 364 VSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~ 383 (401)
+ .||+..+.. ..+.+.+
T Consensus 84 ~-~l~g~~~~g--~~l~V~~ 100 (114)
T 2cq4_A 84 I-GLTGQRLLG--VPIIVQA 100 (114)
T ss_dssp H-HHTTEEETT--EEEEEEE
T ss_pred H-HcCCCEeCC--eEEEEEe
Confidence 9 999877544 3455444
No 15
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=115.86 Aligned_cols=83 Identities=27% Similarity=0.287 Sum_probs=68.1
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++++++|+++|++||.|..|++++++.++ .++|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----------------KPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-----------------EEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998764322 138999999999999999999
Q ss_pred HhcccccccccceEEEeecccC
Q 015730 366 HLHFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~~~~ 387 (401)
.|++..+.. ..+.+.+...+
T Consensus 69 ~l~g~~~~g--~~l~v~~a~~~ 88 (104)
T 1p1t_A 69 NLNGREFSG--RALRVDNAASE 88 (104)
T ss_dssp HSSSBSCSS--SCBEEEETTCT
T ss_pred HhCCCeeCC--cEEEEEeCCCc
Confidence 999877654 44555554433
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=111.42 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=64.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++++++.++. .+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 367999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
||+..+.. ..+.+.+
T Consensus 68 l~g~~~~g--~~l~v~~ 82 (87)
T 3bs9_A 68 MGGQWLGG--RQIRTNW 82 (87)
T ss_dssp HTTCEETT--EECEEEE
T ss_pred cCCCEECC--eEEEEEe
Confidence 99876544 3444444
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=114.17 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-----------------KPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-----------------CCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeeccc
Q 015730 367 LHFMIMLFFFSAFCLMFVTQ 386 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~ 386 (401)
||+..+.. ..+.+.+...
T Consensus 70 l~g~~~~g--~~l~V~~a~~ 87 (99)
T 1whw_A 70 VDGQVFQG--RMLHVLPSTI 87 (99)
T ss_dssp TTTEESSS--CEEEEEECCC
T ss_pred hCCCEECC--cEEEEEEcCC
Confidence 99877554 4555555433
No 18
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.50 E-value=2.7e-14 Score=117.05 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=65.7
Q ss_pred hhheeccCCCC------cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 288 SRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 288 ~rtVyV~nLP~------d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
.++|||+|||. ++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A~ 68 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK-----------------TKGFLFVECGSMNDAK 68 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc-----------------cceEEEEEECCHHHHH
Confidence 68999999999 999999999999999999999987654321 3899999999999999
Q ss_pred HHHHHhcccccccccceEEEeec
Q 015730 362 KAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 362 kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
+|++.||+..+... ..+.+.+.
T Consensus 69 ~Ai~~lng~~~~g~-r~l~V~~a 90 (100)
T 3ns6_A 69 KIIKSFHGKRLDLK-HRLFLYTM 90 (100)
T ss_dssp HHHHHHTTCBSSSS-CBCEEEES
T ss_pred HHHHHhCCcccCCC-eEEEEEEC
Confidence 99999998776541 34444443
No 19
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=122.27 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=62.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||+++|+++|+++|++||.|+.|+|+++ ||||||||++.++|++|++.|
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHHh
Confidence 689999999999999999999999999999999642 789999999999999999999
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
++......+..+.+.+..
T Consensus 88 ~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 88 TSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp HHHCCCBTTBCCEEEECS
T ss_pred ccCCceECCeEEEEEEcc
Confidence 864333333455555543
No 20
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=117.66 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=61.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|+.||.|..|+|+++ ||||||||++.++|++|++.|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHHh
Confidence 689999999999999999999999999999998631 789999999999999999998
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
+.......+..+.+.+..
T Consensus 72 ~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 72 SAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp HHSCCEETTEECEEEECS
T ss_pred ccCCceECCcEEEEEEcC
Confidence 754333334555555543
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=111.44 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=65.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..|++++++.++. .+|||||+|++.++|++|++.|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR-----------------SKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC-----------------CCSEEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHHHh
Confidence 67999999999999999999999999999999987643221 3899999999999999999999
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
|+..+.. ..+.+.+..
T Consensus 68 ~g~~~~g--~~l~V~~a~ 83 (95)
T 2dnz_A 68 NGFELAG--RPMRVGHVT 83 (95)
T ss_dssp TTCCSSS--SCCEEEESS
T ss_pred CCCeeCC--cEEEEEEcc
Confidence 9876554 345555443
No 22
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.49 E-value=7e-14 Score=112.95 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=65.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR-----------------SKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC-----------------BCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc-----------------cceEEEEEECCHHHHHHHHHHh
Confidence 47999999999999999999999999999999976543221 3899999999999999999999
Q ss_pred cccccccccceEEEeecc
Q 015730 368 HFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~~ 385 (401)
|+..+.. ..+.+.+..
T Consensus 65 ~g~~~~g--~~l~V~~a~ 80 (96)
T 2x1f_A 65 NGYQLGS--RFLKCGYSS 80 (96)
T ss_dssp TTCEETT--EECEEEECS
T ss_pred CCCeECC--eEEEEEEcC
Confidence 9876554 345555543
No 23
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=5.8e-14 Score=115.10 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=66.6
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM-----------------HKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999987643221 38999999999999999999
Q ss_pred Hhccccccc-ccceEEEeec
Q 015730 366 HLHFMIMLF-FFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~-~~~~~~~~~~ 384 (401)
.|++..++. ....+.+.+.
T Consensus 74 ~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 74 ALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp HHTTTCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCceEEEEEC
Confidence 999876522 2344555544
No 24
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=8.2e-14 Score=110.32 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=62.3
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
+.+.++|||+|||.++++++|+++|+.||.|..|++++++.++. .+|||||+|++.++|++|+
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH-----------------PKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSS-----------------CCEEEEEEESSTHHHHHHG
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999987643221 3899999999999999999
Q ss_pred HHhccccccc
Q 015730 365 SHLHFMIMLF 374 (401)
Q Consensus 365 ~~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 66 -~~~g~~~~g 74 (89)
T 3ucg_A 66 -ALDESLFRG 74 (89)
T ss_dssp -GGTTCEETT
T ss_pred -hcCCCEECC
Confidence 999887554
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=3.1e-14 Score=114.07 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=58.7
Q ss_pred hheeccCCCCcccHHHHHHHHhccC--CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.+|||+|||.++|+++|+++|++|| .|..|++++++.++. .+|||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~-----------------~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC-----------------EEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 999999987654332 389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 65 l~g~~~~g 72 (90)
T 3p5t_L 65 LPKRELHG 72 (90)
T ss_dssp GGGSCSSS
T ss_pred cCCCeeCC
Confidence 99877554
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=112.76 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----------------RSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC-----------------SCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999998654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 74 l~g~~~~g--~~l~v~~a 89 (102)
T 1x5s_A 74 MNGKSVDG--RQIRVDQA 89 (102)
T ss_dssp HTTCCTTS--CCCEEEEE
T ss_pred hCCCEECC--eEEEEEEC
Confidence 99887654 33444443
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.48 E-value=3.7e-14 Score=116.30 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=58.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCC--eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~--V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
-.||||+|||.++|+++|+++|++||. |..|++++++.++. +||||||+|++.++|++|++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-----------------NRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-----------------CSSEEEEECSSSHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-----------------CceEeEEEECCHHHHHHHHH
Confidence 358999999999999999999999995 67899887654332 38999999999999999999
Q ss_pred Hhcccc
Q 015730 366 HLHFMI 371 (401)
Q Consensus 366 ~ln~~~ 371 (401)
.||+..
T Consensus 72 ~lng~~ 77 (95)
T 2lkz_A 72 ILQSLH 77 (95)
T ss_dssp HHHSSS
T ss_pred HhcCCC
Confidence 999863
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.48 E-value=1.1e-13 Score=108.27 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=64.2
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
.+|||+|||.++++++|+++|+.||.|..|+++++..++. .+|||||+|++.++|++|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS-----------------SRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999987643221 38999999999999999999999
Q ss_pred ccccccccceEEEeec
Q 015730 369 FMIMLFFFSAFCLMFV 384 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~ 384 (401)
+..+.. ..+.+.+.
T Consensus 65 g~~~~g--~~l~v~~a 78 (83)
T 3md1_A 65 GQDLNG--RPLRINWA 78 (83)
T ss_dssp TCEETT--EECEEEEC
T ss_pred CCeeCC--cEEEEEec
Confidence 887654 34454444
No 29
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.2e-13 Score=127.04 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=82.1
Q ss_pred CHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCC
Q 015730 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (401)
Q Consensus 249 d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~ 328 (401)
+.+.+..||+......+ .|+.++...............++|||+|||.++|+++|+++|++||.|..|+|++++.
T Consensus 66 ~~~~A~~Ai~~~~~~~~--~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--- 140 (213)
T 4f02_A 66 QPADAERALDTMNFDVI--KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--- 140 (213)
T ss_dssp SHHHHHHHHHHHTTCEE--TTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---
T ss_pred CHHHHHHHHHHhhhhhc--CCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC---
Confidence 34455555554333233 2344443333222223334467899999999999999999999999999999986531
Q ss_pred CCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEeecccCHHHHHH
Q 015730 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFVTQTNEIRTS 393 (401)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~~~~~e~R~~ 393 (401)
..+|||||+|++.++|++|++.||+..+.. ..+.+.+. +.+++|+.
T Consensus 141 ----------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g--~~i~V~~a-~~~~~~~~ 186 (213)
T 4f02_A 141 ----------------GSKGYGFVHFETQEAAERAIEKMNGMLLND--RKVFVGRF-KSRKEREA 186 (213)
T ss_dssp ----------------EEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC-CCHHHHHH
T ss_pred ----------------CCceEEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEc-CCCcccch
Confidence 138999999999999999999999877654 34554443 33444443
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=110.13 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=61.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++++++.++ ..+|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----------------KSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSC-----------------CCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 78 l~g~~~~g 85 (94)
T 2e5h_A 78 INNKQLFG 85 (94)
T ss_dssp TTTEEETT
T ss_pred cCCCeeCC
Confidence 99876554
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=110.02 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=61.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+++++..++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999998764322 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 77 l~g~~~~g 84 (95)
T 2cqc_A 77 ANGMELDG 84 (95)
T ss_dssp HTTEEETT
T ss_pred hCCCEECC
Confidence 99876554
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.47 E-value=6.2e-14 Score=115.84 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=65.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS-----------------SBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 88 l~g~~~~g--~~l~V~~a 103 (110)
T 1oo0_B 88 LNGAEIMG--QTIQVDWC 103 (110)
T ss_dssp HTTCEETT--EECEEEES
T ss_pred cCCCEECC--cEEEEEEc
Confidence 99876544 34555544
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.47 E-value=1.1e-13 Score=115.32 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=65.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 77 l~g~~~~g--~~l~V~~a 92 (115)
T 2dgo_A 77 MGGQWLGG--RQIRTNWA 92 (115)
T ss_dssp TTTCEETT--EECEEEES
T ss_pred hCCCEECC--EEEEEEEc
Confidence 99876544 34555554
No 34
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.8e-14 Score=110.61 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=61.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~l 67 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK-----------------CKGYGFVDFDSPSAAQKAVTAL 67 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCS-----------------CCSEEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHHHh
Confidence 68999999999999999999999999999999987643221 3899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 68 ~g~~~~g 74 (85)
T 1x4e_A 68 KASGVQA 74 (85)
T ss_dssp HHHTCCE
T ss_pred cCCeEee
Confidence 9876544
No 35
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.1e-14 Score=120.73 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=62.5
Q ss_pred hhheeccCCCCc-ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d-~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.+ +++++|+++|++||.|..|+|++ .||||||||++.++|++|++.
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 689999999998 99999999999999999999963 278999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++....+.+..+.+.+..
T Consensus 82 l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 82 CLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp HHHSCCCSSSSCCEEEEEC
T ss_pred hccCCceECCEEEEEEECc
Confidence 9865433333455555543
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=113.59 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=65.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.||.|..|+|++++.++. ++|||||+|++.++|++|++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY-----------------LKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 85 l~g~~~~g--~~l~V~~a 100 (106)
T 1p27_B 85 LNGQDLMG--QPISVDWC 100 (106)
T ss_dssp HTTCBSSS--SBCEEEES
T ss_pred hcCCEECC--cEEEEEee
Confidence 99876554 34444443
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.47 E-value=8.3e-14 Score=109.37 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=61.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+++++..++ ..+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTT-----------------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCC-----------------ccccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653221 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 69 l~g~~~~g 76 (85)
T 3mdf_A 69 MNESELFG 76 (85)
T ss_dssp HTTCEETT
T ss_pred hCCCEECC
Confidence 99887654
No 38
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=114.18 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=65.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-----------------SKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC-----------------BCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------CccEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hc------ccccccccceEEEeecc
Q 015730 367 LH------FMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln------~~~~~~~~~~~~~~~~~ 385 (401)
|+ +..+.. ..+.+.+..
T Consensus 77 ~~~~~~~~~~~~~g--~~l~v~~a~ 99 (111)
T 1x4h_A 77 ASLEAEGGGLKLDG--RQLKVDLAV 99 (111)
T ss_dssp HCTTTTTCCEESSS--CEEEEECCC
T ss_pred hccccccCCcEEcC--EEEEEEECC
Confidence 98 555433 455555543
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=110.86 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=64.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~- 70 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR-----------------PRGFGFITFEDEQSVDQAVN- 70 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS-----------------CCSEEEEEESSHHHHHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------CCceEEEEECCHHHHHHHHH-
Confidence 468999999999999999999999999999999987643221 38999999999999999998
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 71 ~~~~~~~g--~~l~V~~a 86 (99)
T 2dgs_A 71 MHFHDIMG--KKVEVKRA 86 (99)
T ss_dssp HCCCBSSS--CBCEEEEC
T ss_pred hCCCEECC--eEEEEEEC
Confidence 88776544 34444443
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=119.10 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=67.8
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
....++|||+|||.++++++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETR-----------------QSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTT-----------------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999998764322 13899999999999999999
Q ss_pred HHhcccccccccceEEEeecc
Q 015730 365 SHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~ 385 (401)
+.||+..+.. ..+.+.+..
T Consensus 102 ~~l~g~~~~g--~~l~v~~a~ 120 (139)
T 1u6f_A 102 AGLNGFNILN--KRLKVALAA 120 (139)
T ss_dssp HHTTTEECSS--CEEEEEESS
T ss_pred HHhCCCEECC--eEEEEEECC
Confidence 9999877554 455555543
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=112.69 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=65.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG-----------------QHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------cCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 77 l~g~~~~g--~~l~v~~a 92 (105)
T 1x5u_A 77 MDMIKLYG--KPIRVNKA 92 (105)
T ss_dssp SSSCBCSS--CBCEEEET
T ss_pred hCCCeECC--eEEEEEEC
Confidence 99877554 34554443
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.46 E-value=1e-13 Score=115.52 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=65.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-----------------LSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC-----------------CcCccEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 87 l~g~~~~g--~~l~V~~a 102 (115)
T 2cpz_A 87 MNGFQIGM--KRLKVQLK 102 (115)
T ss_dssp HTTCEETT--EECEEECC
T ss_pred cCCCEECC--EEEEEEEc
Confidence 99877554 34555544
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=112.15 Aligned_cols=78 Identities=26% Similarity=0.312 Sum_probs=65.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|++++ ++ ..+|||||+|++.++|++|++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AG-----------------KPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CEEeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998653 11 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 78 l~g~~~~g--~~l~v~~a 93 (100)
T 2do4_A 78 MDGMTIKE--NIIKVAIS 93 (100)
T ss_dssp HTTEESSS--CEEEEEEC
T ss_pred hCCCEECC--EEEEEEEC
Confidence 99876554 44555544
No 44
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=2.8e-13 Score=125.98 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=62.1
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++++++|+++|+.|| .|..|+++.. .+|||||+|++.++|.+|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 57899999999999999999999999 9999998531 278999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ...+.+.+.
T Consensus 209 l~g~~~~~-g~~l~v~~a 225 (229)
T 2adc_A 209 LHNHDLGE-NHHLRVSFS 225 (229)
T ss_dssp HTTCBSSS-SCBCEEEEC
T ss_pred HCCCccCC-CCeEEEEEe
Confidence 99987651 234554443
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.5e-14 Score=113.33 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-----------------CCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 74 l~g~~~~g--~~l~V~~a 89 (102)
T 2cqb_A 74 MNESELFG--RTIRVNLA 89 (102)
T ss_dssp HTTEEETT--EEEEEEEC
T ss_pred hCCCEECC--cEEEEEeC
Confidence 99877554 34555543
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=112.72 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=64.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecC-CCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p-~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++++++|+++|+.||.|..|+|+++ +.++ ..+|||||+|++.++|++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 76 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG-----------------AHRGFGFVDFITKQDAKKAFN 76 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC-----------------SSCSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC-----------------CcCceEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999999999999765 3221 138999999999999999999
Q ss_pred Hh-cccccccccceEEEeec
Q 015730 366 HL-HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~l-n~~~~~~~~~~~~~~~~ 384 (401)
.| |+..+.. ..+.+.+.
T Consensus 77 ~l~~~~~~~g--~~l~v~~a 94 (107)
T 2cph_A 77 ALCHSTHLYG--RRLVLEWA 94 (107)
T ss_dssp HHHTCCBSSS--CBCEEEEC
T ss_pred HhccCCeECC--CEEEEEeC
Confidence 99 7666544 34554444
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=113.41 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=65.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ-----------------SKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 77 l~g~~~~g--~~l~v~~a 92 (103)
T 2cq0_A 77 VSGFGYDH--LILNVEWA 92 (103)
T ss_dssp TTTCEETT--EECEEEES
T ss_pred cCCCeeCC--cEEEEEEC
Confidence 99877554 34444443
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.45 E-value=7.1e-14 Score=114.36 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=66.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++.+ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-G-----------------SSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCcEEEEEeCCHHHHHHHHHH
Confidence 368999999999999999999999999999999986531 1 1389999999999999999999
Q ss_pred hcccccccc-cceEEEeecc
Q 015730 367 LHFMIMLFF-FSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~-~~~~~~~~~~ 385 (401)
||+..+... ...+.+.+..
T Consensus 76 l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESC
T ss_pred HcCCccCCCCCccEEEEECc
Confidence 998875541 1345555543
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.6e-13 Score=118.05 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=65.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC-----------------CCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 108 lng~~i~g--~~l~V~~a 123 (129)
T 2kxn_B 108 ANGMELDG--RRIRVDFS 123 (129)
T ss_dssp HTTCCSSS--SCCEESCC
T ss_pred hCCCEECC--EEEEEEEe
Confidence 99876554 34444443
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=111.68 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=65.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++. ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999986521 1289999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++..+.. ..+.+.+..
T Consensus 75 l~g~~~~g--~~l~V~~a~ 91 (103)
T 2cqi_A 75 MNGRKILG--KEVKVNWAT 91 (103)
T ss_dssp HTTEEETT--EEEEEEECC
T ss_pred hCCCCcCC--CeEEEEECC
Confidence 99887554 455555543
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=109.75 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=61.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++.+ + ..+|||||+|++.++|++|++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G-----------------KPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999986532 1 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 77 l~g~~~~g 84 (95)
T 2ywk_A 77 LNGIRLYG 84 (95)
T ss_dssp HTTCEETT
T ss_pred hCCCEECC
Confidence 99877554
No 52
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=113.34 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~-----------------~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR-----------------SRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCC-----------------CTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987643221 38999999999999999999
Q ss_pred Hhc
Q 015730 366 HLH 368 (401)
Q Consensus 366 ~ln 368 (401)
.++
T Consensus 86 ~~~ 88 (109)
T 2rs2_A 86 QSR 88 (109)
T ss_dssp SSC
T ss_pred HCC
Confidence 875
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.1e-14 Score=113.26 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=65.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEE-EEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~V-ri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++++++|+++|++||.|..| +|++++.++ ..+|||||+|++.++|++|++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-----------------NSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-----------------SCCSEEEEEBSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCC-----------------CcCeEEEEEECCHHHHHHHHHH
Confidence 6899999999999999999999999999999 997653322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 68 l~g~~~~g--~~l~v~~a 83 (96)
T 1x5t_A 68 MNGQYLCN--RPITVSYA 83 (96)
T ss_dssp TTTCEETT--EECEEEES
T ss_pred cCCCEECC--EEEEEEEe
Confidence 99887654 34554443
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=114.65 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK-----------------SRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCC-----------------CCSEEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHHh
Confidence 478999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
++. .+. ...+.+.+.
T Consensus 79 ~~~-~~~--g~~l~V~~a 93 (116)
T 2cqd_A 79 PNP-IID--GRKANVNLA 93 (116)
T ss_dssp SSC-EET--TEECEEEES
T ss_pred CCC-cCC--CEEEEEEEc
Confidence 997 322 344555554
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-14 Score=115.55 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++++++.++ ..+|||||+|++.++|++|++.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG-----------------RSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTT-----------------EEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764322 1389999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++..+.. ..+.+.+..
T Consensus 88 l~g~~i~g--~~l~V~~a~ 104 (108)
T 2jrs_A 88 LNGFELAG--RPMKVGHVT 104 (108)
T ss_dssp HTTCCSSS--SCCEEECSC
T ss_pred cCCCEECC--EEEEEEEcc
Confidence 99876544 445555543
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=114.64 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=65.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|++++ ++ ..+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TS-----------------KSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TT-----------------TCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998654 21 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 68 l~g~~~~g--~~l~V~~a 83 (116)
T 2fy1_A 68 MNGKSLHG--KAIKVEQA 83 (116)
T ss_dssp CSSCBCSS--SBCEEEEC
T ss_pred hCCCEECC--EEEEEEEC
Confidence 99877654 34444443
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=112.40 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++|++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTK-----------------APRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CCCeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 75 l~g~~~~g--~~l~V~~a 90 (103)
T 2dnm_A 75 MDGAELDG--RELRVQVA 90 (103)
T ss_dssp HSSCCBTT--BCCEEEEC
T ss_pred cCCCEECC--cEEEEEEC
Confidence 99877554 34444443
No 58
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=112.11 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=62.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCee-EEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~-~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++++++|+++|++||.|. .|+|++++.++. .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGI-----------------PAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCC-----------------EEEEEEEECSCHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCC-----------------cCCEEEEEeCCHHHHHHHHH
Confidence 368999999999999999999999999999 999987653321 38999999999999999999
Q ss_pred Hhcccccccc
Q 015730 366 HLHFMIMLFF 375 (401)
Q Consensus 366 ~ln~~~~~~~ 375 (401)
.||+..+...
T Consensus 71 ~l~g~~~~g~ 80 (99)
T 2div_A 71 KINGKPLPGA 80 (99)
T ss_dssp TTTTSEESSC
T ss_pred HHcCCccCCC
Confidence 9998765553
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=108.88 Aligned_cols=72 Identities=26% Similarity=0.289 Sum_probs=61.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|++.++..+++ ..+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH----------------LSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE----------------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC----------------CCCcEEEEEEecHHHHHHHHHH
Confidence 357999999999999999999999999999999976532110 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 67 l~g~~~~g 74 (88)
T 4a8x_A 67 MDGGQIDG 74 (88)
T ss_dssp HTTCEETT
T ss_pred cCCCeECC
Confidence 99887655
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=111.23 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=65.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++....+ .+ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g-------t~-------~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAG-------VL-------LSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTC-------CE-------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-------Cc-------CcccEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999986532100 00 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 70 l~g~~~~g--~~l~V~~a 85 (98)
T 2cpf_A 70 LQGHTVDG--HKLEVRIS 85 (98)
T ss_dssp STTCEETT--EECEEECS
T ss_pred hCCCeeCC--eEEEEEEc
Confidence 99876554 34554443
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.44 E-value=1.5e-13 Score=114.90 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=62.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL-----------------SKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC-----------------CCCEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 102 l~g~~~~g 109 (118)
T 2khc_A 102 MNGFQVGT 109 (118)
T ss_dssp CCCCEETT
T ss_pred cCCCEECC
Confidence 99876544
No 62
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=108.14 Aligned_cols=67 Identities=25% Similarity=0.255 Sum_probs=57.7
Q ss_pred hheeccCCCCcc------cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 289 RIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 289 rtVyV~nLP~d~------t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
++|||+|||.++ ++++|+++|++||.|..|+|.+ .++ ..+|||||+|++.++|++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g-----------------~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT-----------------BCCCEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC-----------------cEeEEEEEEECCHHHHHH
Confidence 689999999999 7899999999999999999852 111 138999999999999999
Q ss_pred HHHHhccccccc
Q 015730 363 AVSHLHFMIMLF 374 (401)
Q Consensus 363 Av~~ln~~~~~~ 374 (401)
|++.||+..+..
T Consensus 63 Ai~~lng~~~~g 74 (81)
T 2krb_A 63 AVKNADGYKLDK 74 (81)
T ss_dssp HHTTSSSCCCSS
T ss_pred HHHHhcCcccCC
Confidence 999999877544
No 63
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=106.45 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=56.2
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|||+|||.++++++|+++|++||.|..|++.+++.++ .++|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS-----------------SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC-----------------CcCceEEEEEcCHHHHHHHHHhCC
Confidence 579999999999999999999999999999998654322 138999999999999999999998
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=112.28 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=65.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|+++ ++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-----------------~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-----------------RSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-----------------CcCEEEEEEECCHHHHHHHHHH
Confidence 4789999999999999999999999999999999764 11 1389999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++..+.. ..+.+.+..
T Consensus 75 l~g~~~~g--~~l~V~~a~ 91 (103)
T 2d9p_A 75 MNGRIVAT--KPLYVALAQ 91 (103)
T ss_dssp HTTCBSSS--SBCEEEECS
T ss_pred hCCCEeCC--cEEEEEEec
Confidence 99887644 345555543
No 65
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=110.05 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=61.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeE--------EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E 358 (401)
..++|||+|||.++++++|+++|++||.|.. |++++++.++. .+|||||+|++.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~G~afV~f~~~~ 74 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK-----------------LKGEATVSFDDPP 74 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS-----------------EEEEEEEEBSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC-----------------eeeEEEEEECCHH
Confidence 3689999999999999999999999999999 99987643221 3899999999999
Q ss_pred HHHHHHHHhccccccc
Q 015730 359 LAEKAVSHLHFMIMLF 374 (401)
Q Consensus 359 ~A~kAv~~ln~~~~~~ 374 (401)
+|++|++.||+..+..
T Consensus 75 ~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 75 SAKAAIDWFDGKEFSG 90 (99)
T ss_dssp HHHHHHHHHTTCBSSS
T ss_pred HHHHHHHHhCCCEeCC
Confidence 9999999999886544
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.6e-13 Score=109.30 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=64.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|+++.. ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999986421 1389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
|++..+.. ..+.+.+
T Consensus 75 l~g~~~~g--~~l~v~~ 89 (103)
T 2cq3_A 75 LHGTVVEG--RKIEVNN 89 (103)
T ss_dssp HTTCEETT--EECEEEE
T ss_pred hCCCEECC--EEEEEEE
Confidence 99887554 3444444
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=6.1e-13 Score=110.66 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=63.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..|++++++ ..+|||||+|.+.++|++|++.|
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~~l 67 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------------------ETRGTAYVVYEDIFDAKNAVDHL 67 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------------------TTTTCEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 6899999999999999999999999999999997532 12899999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
|+..+.. ..+.+.+.
T Consensus 68 ~g~~~~g--~~l~v~~a 82 (115)
T 3lqv_A 68 SGFNVSN--RYLVVLYY 82 (115)
T ss_dssp TTCBSSS--CBCEEEEC
T ss_pred CCCEECC--eEEEEEEe
Confidence 9887654 34444443
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.42 E-value=5.6e-13 Score=108.61 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=62.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
+..|||+||+..+|+++|+++|++||+|.++++.. .||||||||.++++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 45799999999999999999999999999999853 2899999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
|+..+.. ..+++.+.
T Consensus 64 n~~~l~g--r~I~V~~A 78 (89)
T 2wbr_A 64 NNCVLAN--TTIFAESP 78 (89)
T ss_dssp TTEEETT--EEEEEECC
T ss_pred cCCEECC--cEEEEEEC
Confidence 9866554 46776655
No 69
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=1.8e-13 Score=120.12 Aligned_cols=79 Identities=22% Similarity=0.147 Sum_probs=66.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++||+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT-----------------ACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 101 l~g~~~~g--~~l~V~~a 116 (156)
T 1h2v_Z 101 INGTRLDD--RIIRTDWD 116 (156)
T ss_dssp TTTSEETT--EECEEEEE
T ss_pred hCCCEECC--eEEEEEEC
Confidence 99877654 34555554
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=113.36 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=65.5
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCee--------EEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~--------~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.++ ..+|||||+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~~ 75 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG-----------------KPKGDATVSYEDP 75 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC-----------------SBCSEEEEEBSSH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC-----------------CeeeEEEEEECCH
Confidence 3478999999999999999999999999998 68887654322 1389999999999
Q ss_pred HHHHHHHHHhcccccccccceEEEeec
Q 015730 358 ELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 358 E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
++|++|++.||+..+.. ..+.+.+.
T Consensus 76 ~~A~~Ai~~l~g~~~~g--~~l~V~~a 100 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQG--SKLKVSLA 100 (113)
T ss_dssp HHHHHHHHHHTTCEETT--EECEEECS
T ss_pred HHHHHHHHHcCCCccCC--CEEEEEEC
Confidence 99999999999887654 34454443
No 71
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=4.6e-13 Score=108.31 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=62.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|++||.|..|++.. .+|||||+|++.++|++|++.|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHHH
Confidence 58999999999999999999999999999999852 1789999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
|+..+......+.+.+.
T Consensus 74 ~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 74 RGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp TTCBCSSSSCBCEEEEC
T ss_pred CCCEeCCCCcEEEEEEC
Confidence 98876521244555544
No 72
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=3.8e-13 Score=110.34 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=61.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|+++. ++ ..+|||||+|++.++|++|++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SG-----------------RSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999998754 21 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 90 l~g~~~~g 97 (107)
T 3ulh_A 90 YNGVPLDG 97 (107)
T ss_dssp HTTCEETT
T ss_pred hCCCEeCC
Confidence 99887654
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.42 E-value=4.1e-13 Score=113.49 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=65.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|+++..++ .++|||||+|++.++|++|++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTS-----------------SBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
||+..+... .+.+.+
T Consensus 84 l~g~~~~g~--~l~v~~ 98 (126)
T 3ex7_B 84 LNGQDLMGQ--PISVDW 98 (126)
T ss_dssp HTTCBSSSS--BCEEEE
T ss_pred hCCCeeCCe--EEEEEE
Confidence 998876553 344444
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.41 E-value=3.2e-13 Score=113.86 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=65.7
Q ss_pred hhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 284 ~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
.....++|||+|||.++|+++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGH-----------------PKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSS-----------------CEEEEEEEESSHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cccEEEEEECCHHHHHHH
Confidence 445678999999999999999999999999999999987643221 389999999999999999
Q ss_pred HHHhcccccccccceEEEee
Q 015730 364 VSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~ 383 (401)
+ +|++..+.. ..+.+.+
T Consensus 95 ~-~l~g~~~~g--~~l~V~~ 111 (124)
T 2jwn_A 95 V-AMDETVFRG--RTIKVLP 111 (124)
T ss_dssp H-TTTTCEETT--EECEEEE
T ss_pred H-hcCCCeECC--eEEEEEE
Confidence 9 898877544 3444444
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=112.69 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=64.8
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++++++|+++|++||.|..|++++++. +.+|||||+|++.++|++|++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHHH
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999975421 138999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.|++..+.. ..+.+.+.
T Consensus 88 ~l~g~~~~g--~~l~V~~a 104 (109)
T 2err_A 88 KLHGTVVEG--RKIEVNNA 104 (109)
T ss_dssp HHTTCEETT--EECEEEEC
T ss_pred HcCCCEECC--EEEEEEEC
Confidence 999887554 34444443
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.9e-13 Score=111.47 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCC-eeEEEEe-cCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~-V~~Vri~-~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|||+|||.++|+++|+++|++||. |..|+++ .++.++ ..+|||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM-----------------KNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT-----------------TTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC-----------------CcCcEEEEEecCHHHHHHHH
Confidence 3689999999999999999999999998 9999986 443221 13899999999999999999
Q ss_pred HHhc-c-cccccccceEEEeecc
Q 015730 365 SHLH-F-MIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln-~-~~~~~~~~~~~~~~~~ 385 (401)
+.|+ + ..+.. ..+.+.+..
T Consensus 70 ~~l~~g~~~~~g--~~l~V~~a~ 90 (109)
T 2dis_A 70 RKLMPGRIQLWG--HQIAVDWAE 90 (109)
T ss_dssp TTTTTCCSCBTT--BCCEEEESC
T ss_pred HHhhCCCceecC--CeEEEEEcC
Confidence 9996 3 33332 345555543
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.7e-13 Score=110.00 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=63.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|..++ ..+|||||+|++.++|++|++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999995321 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 81 l~g~~~~g--~~l~V~~a 96 (109)
T 1x4a_A 81 RDGYDYDG--YRLRVEFP 96 (109)
T ss_dssp HTTCEETT--EECEEECC
T ss_pred cCCCEECC--eEEEEEEc
Confidence 99876544 34555544
No 78
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=2.3e-13 Score=107.65 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=57.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++++++.++. .+|||||+|++.++|++|++.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR-----------------SRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSTHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc-----------------cccEEEEEECCHHHHHHHHHh
Confidence 478999999999999999999999999999999987643321 389999999999999999965
Q ss_pred hcccc
Q 015730 367 LHFMI 371 (401)
Q Consensus 367 ln~~~ 371 (401)
++..
T Consensus 73 -~~~~ 76 (87)
T 3s7r_A 73 -KEHR 76 (87)
T ss_dssp -SCEE
T ss_pred -CCCE
Confidence 4443
No 79
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.4e-13 Score=110.43 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.|| |..|+|++++.+. + ..+|||||+|++.++|++|+ .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---------g-------~~~g~afV~f~~~~~a~~A~-~ 75 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---------E-------RLKGFGYAEFEDLDSLLSAL-S 75 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT---------T-------SBCSCEEEEESSHHHHHHHH-G
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC---------C-------CcCeEEEEEECCHHHHHHHH-h
Confidence 368999999999999999999999999 9999998764321 1 13899999999999999999 9
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 76 l~g~~~~g--~~l~V~~a 91 (104)
T 1wi8_A 76 LNEESLGN--KRIRVDVA 91 (104)
T ss_dssp GGTCEETT--EECEEEEC
T ss_pred cCCCEeCC--cEEEEEEc
Confidence 99876544 34444443
No 80
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.2e-13 Score=105.71 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=61.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+++ +|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999999984 67999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 62 l~g~~~~g--~~l~v~~a 77 (90)
T 2dnq_A 62 LHHYKLHG--VNINVEAS 77 (90)
T ss_dssp HTTCBCSS--CBCEEECS
T ss_pred hcCCccCC--cEEEEEEC
Confidence 99876554 34554443
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=110.64 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G-----------------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987532 1 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 76 l~g~~~~g 83 (114)
T 2do0_A 76 FNGQLLFD 83 (114)
T ss_dssp HTTCEETT
T ss_pred hCCCEeCC
Confidence 99887654
No 82
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.40 E-value=3.8e-13 Score=113.46 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=63.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++++++|+++|++|| .|..|++... ..+|||||+|++.++|++|++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 57899999999999999999999999 9999988421 1289999999999999999999
Q ss_pred hcccccccccceEEEeecccC
Q 015730 367 LHFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~ 387 (401)
||+..+.. ..+.+.+....
T Consensus 87 lng~~l~G--r~i~V~~a~~~ 105 (111)
T 2jvr_A 87 LNNIEFRG--SVITVERDDNP 105 (111)
T ss_dssp TTTEEETT--EEEEEEESCC-
T ss_pred cCCCEECC--eEEEEEECCCC
Confidence 99877554 35555555443
No 83
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.40 E-value=1.9e-13 Score=128.63 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=65.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccC--CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|||+||+.++|+++|+++|++|| .|+.|+|++++.++. .||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 467899999999999999999999999 999999988754332 3899999999999999999
Q ss_pred HHhcccccccccceEEEeecc
Q 015730 365 SHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~ 385 (401)
+.||+..+.. ..+.+.+..
T Consensus 130 ~~lng~~~~G--r~l~V~~a~ 148 (229)
T 3q2s_C 130 DLLPKRELHG--QNPVVTPVN 148 (229)
T ss_dssp TTSTTSCBTT--BCCEEEECC
T ss_pred HHcCCCeECC--EEeEEEECC
Confidence 9999887655 344544443
No 84
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.6e-13 Score=111.75 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=64.2
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
....++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR-----------------SRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS-----------------CCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC-----------------cCceEEEEeCCHHHHHHHH
Confidence 34578999999999999999999999999999999987643221 3899999999999999999
Q ss_pred HHhcccccccccceEEEeec
Q 015730 365 SHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~ 384 (401)
+. ++..+.. ..+.+.+.
T Consensus 87 ~~-~~~~~~g--~~l~V~~a 103 (116)
T 1x4b_A 87 AA-RPHSIDG--RVVEPKRA 103 (116)
T ss_dssp TS-CSEEETT--EEEEEECC
T ss_pred Hh-CCcEECC--EEEEEEEC
Confidence 97 6554333 34554443
No 85
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5e-13 Score=109.11 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=61.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhc-cCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~-fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++|+++|+++|+. ||.|..|+|+++. ++. .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV-----------------SKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------ccceEEEEECCHHHHHHHHH
Confidence 3689999999999999999999999 9999999998764 221 38999999999999999999
Q ss_pred Hhcccc-ccc
Q 015730 366 HLHFMI-MLF 374 (401)
Q Consensus 366 ~ln~~~-~~~ 374 (401)
.|++.. +..
T Consensus 70 ~l~g~~~~~g 79 (104)
T 2dhg_A 70 ECQGAVGLGS 79 (104)
T ss_dssp HTTTCCSSSS
T ss_pred HccCCcccCC
Confidence 999877 444
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=4.5e-13 Score=119.11 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=67.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|.+.++|++||+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-----------------SKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc-----------------EeeEEEEEECCHHHHHHHHHH
Confidence 467899999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEeecccCH
Q 015730 367 LHFMIMLFFFSAFCLMFVTQTN 388 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~~~~ 388 (401)
||+..+.. ..+.+.+...+.
T Consensus 134 l~g~~~~g--~~l~V~~a~~~~ 153 (165)
T 1rk8_A 134 LNGAEIMG--QTIQVDWCFVKG 153 (165)
T ss_dssp HTTCEETT--EECEEEESEECC
T ss_pred hCCCEECC--EEEEEEEecCCC
Confidence 99876554 445555544333
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=109.86 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=59.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ-----------------SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSTTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC-----------------cceEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999999999999987643221 389999999999999999998
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
++..+..
T Consensus 78 -~~~~~~g 84 (105)
T 2dh8_A 78 -RPHTLDG 84 (105)
T ss_dssp -CSEEETT
T ss_pred -CCCeECC
Confidence 6655443
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=9e-13 Score=113.94 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=64.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..++++++..++. .+|||||+|++.++|.+|++.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS-----------------SRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC-----------------cceEEEEEeCCHHHHHHHHHH
Confidence 467999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
|++..+.. ..+.+.+
T Consensus 149 l~g~~~~g--~~i~v~~ 163 (166)
T 3md3_A 149 MQGQDLNG--RPLRINW 163 (166)
T ss_dssp HTTCEETT--EECEEEE
T ss_pred hCCCccCC--cEEEEEe
Confidence 99887544 3444443
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.39 E-value=9.2e-13 Score=111.32 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=64.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|++++ ++ ..+|||||+|++.++|++|++.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-----------------RSLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SS-----------------SCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CC-----------------CEeeEEEEEECCHHHHHHHHHH
Confidence 36799999999999999999999999999999998654 21 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 96 l~g~~~~g--~~l~V~~a 111 (124)
T 2kt5_A 96 YKGVPLDG--RPMDIQLV 111 (124)
T ss_dssp HTTEESSS--CEEEEEEE
T ss_pred cCCCEECC--cEEEEEEe
Confidence 99876544 34554443
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=106.97 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=63.3
Q ss_pred hhheeccCCCCcccHHHHH----HHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~----~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
.++|||+|||.++++++|+ ++|++||.|..|+|++++. .+|||||+|++.++|++|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~--------------------~rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD--------------------YQLKAVVQMENLQDAIGA 68 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS--------------------TTCCEEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC--------------------CCeEEEEEECCHHHHHHH
Confidence 5789999999999999999 9999999999999975431 178999999999999999
Q ss_pred HHHhcccccccccceEEEeec
Q 015730 364 VSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~~ 384 (401)
++.||+..+.. ..+.+.+.
T Consensus 69 i~~l~g~~~~g--r~l~V~~a 87 (96)
T 2dgx_A 69 VNSLHRYKIGS--KKILVSLA 87 (96)
T ss_dssp HHHHTTEEETT--EEEEEEEC
T ss_pred HHHhCCCEECC--eEEEEEEc
Confidence 99999877554 34555443
No 91
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=6.6e-13 Score=110.93 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=58.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|.. .+|||||+|++.++|++|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHHH
Confidence 467999999999999999999999999999998842 278999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 66 l~g~~~~g 73 (111)
T 1whx_A 66 LAYSKFHH 73 (111)
T ss_dssp HTTCBSSS
T ss_pred hCCCEECC
Confidence 99887654
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-13 Score=109.62 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=58.4
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCC-CCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ-TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~-~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
...++|||+|||.++++++|+++|+.|| |..|+|++++ .++ ..+|||||+|++.++|++|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE-----------------RLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTC-----------------CCCSCEEEEECCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCC-----------------ccCeEEEEEECCHHHHHHHH
Confidence 3578999999999999999999999999 9999997654 121 13899999999999999999
Q ss_pred HHhccccccc
Q 015730 365 SHLHFMIMLF 374 (401)
Q Consensus 365 ~~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 79 -~l~g~~~~g 87 (100)
T 2j76_E 79 -SLNEESLGN 87 (100)
T ss_dssp -HTTTCCBTT
T ss_pred -hcCCCEECC
Confidence 899877554
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.39 E-value=4.1e-13 Score=103.27 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=57.0
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+|||+|||.++++++|+++|++||.|..|++.+++.++ .++|||||+|++.++|++|++ +++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTN-----------------RHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSST-----------------TSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH-CCC
Confidence 58999999999999999999999999999987654322 138999999999999999997 877
Q ss_pred ccccc
Q 015730 370 MIMLF 374 (401)
Q Consensus 370 ~~~~~ 374 (401)
..+..
T Consensus 63 ~~~~g 67 (75)
T 2mss_A 63 HEINN 67 (75)
T ss_dssp CCSSS
T ss_pred CEECC
Confidence 66544
No 94
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=1.6e-12 Score=112.52 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=65.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++.++..++. .+|||||+|++.++|.+|++.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV-----------------SRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC-----------------ccceEEEEeCCHHHHHHHHHH
Confidence 467899999999999999999999999999999987543221 389999999999999999999
Q ss_pred hcccccccccceEEE
Q 015730 367 LHFMIMLFFFSAFCL 381 (401)
Q Consensus 367 ln~~~~~~~~~~~~~ 381 (401)
|++..+......+.+
T Consensus 150 l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 150 LNGQKPSGATEPITV 164 (167)
T ss_dssp HTTCCCTTCSSCCEE
T ss_pred hcCCccCCCccceEE
Confidence 999876654334443
No 95
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.7e-13 Score=108.87 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=58.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..|++.+ .+|||||+|++.++|++|++.|
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVAL 83 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 57899999999999999999999999999999852 2899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 84 ~g~~~~g 90 (101)
T 2la4_A 84 ANFPFQG 90 (101)
T ss_dssp TTCEETT
T ss_pred CCCeECC
Confidence 9876554
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.39 E-value=2.2e-13 Score=108.41 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=59.8
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|||+|||.++++++|+++|++||.|..|++++++.++. .+|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKK-----------------PKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCC-----------------CCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCC-----------------cceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999987643221 3899999999999 999999999
Q ss_pred cccccc
Q 015730 369 FMIMLF 374 (401)
Q Consensus 369 ~~~~~~ 374 (401)
+..+..
T Consensus 64 g~~~~g 69 (90)
T 2ki2_A 64 NTDFMG 69 (90)
T ss_dssp SSCCSS
T ss_pred CCEECC
Confidence 887654
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=112.80 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=61.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|.+++.++ ..+|||||+|++.++|++|++.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTC-----------------CCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC-----------------CcCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 125 l~g~~~~g 132 (140)
T 2ku7_A 125 MNESELFG 132 (140)
T ss_dssp STEEEETT
T ss_pred hCCCEECC
Confidence 99876543
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7e-13 Score=104.21 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=57.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++++ .+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHHHT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999963 178999999999999999999
Q ss_pred h-ccccccc
Q 015730 367 L-HFMIMLF 374 (401)
Q Consensus 367 l-n~~~~~~ 374 (401)
| ++..+..
T Consensus 68 l~~~~~~~g 76 (85)
T 2ytc_A 68 SFNKLIVNG 76 (85)
T ss_dssp TTTTCEETT
T ss_pred hcCCeeECC
Confidence 9 6655433
No 99
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5.7e-13 Score=108.12 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=62.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|++.+ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999863 178999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 71 l~g~~~~g--~~l~v~~a 86 (99)
T 2cpj_A 71 LDNMPLRG--KQLRVRFA 86 (99)
T ss_dssp HTTCCBTT--BCCEEEES
T ss_pred hCCCEeCC--ceEEEEEc
Confidence 99887554 34444443
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.2e-13 Score=108.54 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=55.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH-----------------SKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHHS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------ccceEEEEECCHHHHHHHHHc
Confidence 468999999999999999999999999999999987643221 389999999999999999995
No 101
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=6.6e-13 Score=108.54 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=63.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.|| |..|+|++++.++. ++|||||+|++.++|++|+ .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDK-----------------FKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHG-G
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHH-h
Confidence 368999999999999999999999998 99999987653321 3899999999999999999 8
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 75 l~g~~~~g--~~l~V~~a 90 (103)
T 2dng_A 75 YDGALLGD--RSLRVDIA 90 (103)
T ss_dssp GTTCEETT--EECEEEEC
T ss_pred hCCCeECC--eEEEEEEe
Confidence 99876554 34554443
No 102
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.38 E-value=8.6e-13 Score=105.19 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=60.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++ ++ ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g-----------------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NG-----------------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 3689999999999999999999999999999999753 11 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 68 l~g~~~~g 75 (92)
T 2dgv_A 68 MNGMKLSG 75 (92)
T ss_dssp HTTCCBTT
T ss_pred hCCCEECC
Confidence 99877554
No 103
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.5e-12 Score=113.21 Aligned_cols=79 Identities=24% Similarity=0.245 Sum_probs=65.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++.++..++ ..+|||||+|++.++|.+|++.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG-----------------RPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998754222 1389999999999999999999
Q ss_pred hcccccccccceEEEe
Q 015730 367 LHFMIMLFFFSAFCLM 382 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~ 382 (401)
||+..+......+.+.
T Consensus 151 l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVR 166 (168)
T ss_dssp HTTCCCTTCSSCCEEE
T ss_pred hcCCEecCCCeEEEEE
Confidence 9998765533444443
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.5e-13 Score=112.07 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=58.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCe-eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++|+++|+++|+.||.| ..|+|++++ ++ ..+|||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g-----------------~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NG-----------------QGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TS-----------------SCSSCEEEECSSHHHHHHHGG
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999 899997654 22 138999999999999999998
Q ss_pred Hhcccccc
Q 015730 366 HLHFMIML 373 (401)
Q Consensus 366 ~ln~~~~~ 373 (401)
. ++..+.
T Consensus 76 ~-~~~~~~ 82 (114)
T 2cpy_A 76 L-HRKKLN 82 (114)
T ss_dssp G-CSEEET
T ss_pred h-CCCccC
Confidence 7 664443
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.38 E-value=8.8e-13 Score=107.94 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=61.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+++ ++||||+|++.++|++|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 36899999999999999999999999999999884 66999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 65 l~g~~~~g--~~l~v~~a 80 (103)
T 2dgu_A 65 MNGKDLEG--ENIEIVFA 80 (103)
T ss_dssp HTTEEETT--EEEEEEEC
T ss_pred HCCCccCC--CEEEEEEc
Confidence 99887554 35555554
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=9e-13 Score=108.95 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=63.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.||.|..|+|+++ +|||||+|++.++|++|++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999999642 78999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++..+.. ..+.+.+..
T Consensus 81 l~g~~~~g--~~l~v~~a~ 97 (109)
T 1x4g_A 81 VNGTTIEG--HVVKCYWGK 97 (109)
T ss_dssp HTTCEETT--EECEEECCC
T ss_pred cCCCEECC--cEEEEEecC
Confidence 99876544 445555543
No 107
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.3e-13 Score=111.14 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred hhhheeccCCCCcccHHHHH---HHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~---~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..++|||+|||.++++++|+ ++|++||.|..|+|.+++.++. .+ ..+|||||+|++.++|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~-------~~-------~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG-------SQ-------GPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS-------SS-------CCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc-------cC-------CCCeEEEEEECcHHHHHHH
Confidence 46799999999999999999 9999999999999987643221 11 1379999999999999999
Q ss_pred HHHhcccccccccceEEEeec
Q 015730 364 VSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~~ 384 (401)
++.||+..+.. ..+.+.+.
T Consensus 80 i~~lng~~~~g--r~l~V~~a 98 (111)
T 2cpi_A 80 IQCVNNVVVDG--RTLKASLG 98 (111)
T ss_dssp HHHHTTEEETT--EEEEEESC
T ss_pred HHHhCCCEECC--EEEEEEec
Confidence 99999887554 34555543
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=1.1e-12 Score=106.94 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=61.2
Q ss_pred hhhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||. ++++++|+++|++||.|..|++. +|||||+|++.++|++|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 478999999998 99999999999999999999982 7899999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.||+..+.. ..+.+.+.
T Consensus 76 ~l~g~~~~g--~~l~V~~a 92 (97)
T 2xnq_A 76 XESQEMNFG--KKLILEVS 92 (97)
T ss_dssp HHTTSEETT--EECEEEEC
T ss_pred HcCCCEECC--EEEEEEec
Confidence 999876544 34444443
No 109
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=105.01 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=61.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++. ++||||+|++.++|++|++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999984 56999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 64 l~g~~~~g--~~l~V~~a 79 (92)
T 2dgt_A 64 LDNTEFQG--KRMHVQLS 79 (92)
T ss_dssp HTTEEETT--EEEEEEES
T ss_pred hCCCeeCC--cEEEEEEc
Confidence 99887654 34555544
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=2.9e-13 Score=108.57 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=59.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++||.|..++++.++.++ ..+|||||+|++.++|++|++.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS-----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC-----------------CEeeEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999999888777653221 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 78 ~g~~~~g 84 (95)
T 2ek1_A 78 NDRPIGS 84 (95)
T ss_dssp TTCEETT
T ss_pred CCCeECC
Confidence 9877554
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=107.82 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=57.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|++||.|..|+|++ .|||||+|++.++|++||+.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHHH
Confidence 67999999999999999999999999999999852 279999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 71 ~g~~~~g 77 (108)
T 1x4c_A 71 DNTKFRS 77 (108)
T ss_dssp SSEEEEC
T ss_pred CcCCccC
Confidence 9887654
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=115.08 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=58.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeE--EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~--Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.++. .||||||+|++. +|++|+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~-----------------~rG~aFV~f~~~-~a~~Ai 83 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL-----------------NRGFAFIQLSTI-EAAQLL 83 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS-----------------BCSCEEEECCHH-HHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC-----------------cceEEEEEECCH-HHHHHH
Confidence 4679999999999999999999999999977 99987654332 389999999999 999999
Q ss_pred HHhccc
Q 015730 365 SHLHFM 370 (401)
Q Consensus 365 ~~ln~~ 370 (401)
+.||+.
T Consensus 84 ~~l~g~ 89 (131)
T 2m2b_A 84 QILQAL 89 (131)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 999987
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.37 E-value=1.1e-12 Score=114.94 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=66.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT-----------------SCCEEEEEESBHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643321 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 132 l~g~~~~g--~~l~v~~a 147 (158)
T 2kn4_A 132 MDGAVLDG--RELRVQMA 147 (158)
T ss_dssp STTEESSS--SEEEEEEE
T ss_pred hCCCEECC--eEEEEEEC
Confidence 99877544 45555554
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.37 E-value=3.2e-13 Score=116.90 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=66.2
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++|+++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS-----------------SCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999999999997654322 138999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.||+..+.. ..+.+.+.
T Consensus 108 ~l~g~~i~g--~~l~V~~a 124 (135)
T 2lea_A 108 AMDGAVLDG--RELRVQMA 124 (135)
T ss_dssp TTTTCCSSS--SCCEEEEC
T ss_pred HcCCCEECC--EEEEEEEC
Confidence 999887554 34454443
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.37 E-value=7.7e-13 Score=110.13 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=63.6
Q ss_pred hhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 285 e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
+...++|||+|||.++|+++|+++|++||.|..|+++ +|||||+|++.++|++|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999984 689999999999999999
Q ss_pred HHhcccccccccceEEEeecc
Q 015730 365 SHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~ 385 (401)
+.||+..+.. ..+.+.+..
T Consensus 83 ~~l~g~~~~g--~~l~V~~a~ 101 (108)
T 2jvo_A 83 EEVHGKSFAN--QPLEVVYSK 101 (108)
T ss_dssp HHHTTCEETT--EECEEESCS
T ss_pred HHcCCCEECC--eEEEEEEec
Confidence 9999887644 455555543
No 116
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.4e-12 Score=105.57 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=58.1
Q ss_pred hhhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||. ++++++|+++|++||.|..|++. +|||||+|++.++|++|++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 63 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAIE 63 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999998 99999999999999999999982 7899999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 64 ~l~g~~~~g 72 (96)
T 2kvi_A 64 CESQEMNFG 72 (96)
T ss_dssp HHTCSSCBT
T ss_pred HcCCCeeCC
Confidence 999887665
No 117
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=5.2e-13 Score=112.75 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=58.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCC---eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..++|||+|||.++|+++|+++|+.||. |..|+|++++. + ..+|||||+|++.++|++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g-----------------~~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G-----------------RQSGEAFVELESEDDVKLA 77 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S-----------------CEEEEEEEEBSSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C-----------------CCCeEEEEEECCHHHHHHH
Confidence 3679999999999999999999999999 89999987542 1 1389999999999999999
Q ss_pred HHHhcccccc
Q 015730 364 VSHLHFMIML 373 (401)
Q Consensus 364 v~~ln~~~~~ 373 (401)
++ +++..+.
T Consensus 78 l~-~~g~~~~ 86 (118)
T 2db1_A 78 LK-KDRESMG 86 (118)
T ss_dssp GG-GTTEEET
T ss_pred Hh-cCCCeEC
Confidence 99 8875543
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.9e-13 Score=110.58 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=61.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|+++. ++ ..+|||||+|++.++|++|++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SG-----------------TSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SS-----------------CEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998753 11 1389999999999999999999
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
||+..+.
T Consensus 86 l~g~~~~ 92 (114)
T 1x5o_A 86 FNGKFIK 92 (114)
T ss_dssp HBTCCCC
T ss_pred hCCCEEc
Confidence 9988764
No 119
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=1e-12 Score=114.71 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=64.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|++.++.+ + ..+|||||+|++.++|++|++.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-G-----------------LSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-C-----------------CEEEEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999976532 1 1389999999999999999999
Q ss_pred hcccccccc-cceEEEe
Q 015730 367 LHFMIMLFF-FSAFCLM 382 (401)
Q Consensus 367 ln~~~~~~~-~~~~~~~ 382 (401)
||+..+... ...+.+.
T Consensus 156 l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp HTTSCCCTTCSSCCEEE
T ss_pred hcCCcccCCCCCCeEEE
Confidence 998765542 2344443
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=104.51 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=61.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+++ ++||||+|++.++|++|++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999984 56899999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 63 l~g~~~~g--~~l~v~~a 78 (90)
T 2dnp_A 63 LNGKEVKG--KRINVELS 78 (90)
T ss_dssp HTTCEETT--EECEEEES
T ss_pred hCCCEECC--cEEEEEEC
Confidence 99876554 34444443
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1.4e-12 Score=119.93 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=61.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+||||+|||.++|+++|+++|++||.|..|+|++++.++. ++|||||+|++.++|++|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----------------SLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC-----------------ccccccceeCCHHHHHHHHHH
Confidence 357999999999999999999999999999999987654332 389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
+++.....
T Consensus 77 ~~~~~~~g 84 (213)
T 4f02_A 77 MNFDVIKG 84 (213)
T ss_dssp HTTCEETT
T ss_pred hhhhhcCC
Confidence 98776544
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=4.4e-13 Score=108.30 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=59.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|+.||.|..++++.++.++ ..+|||||+|++.++|++|++.|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSS-----------------CEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCC-----------------CeeeEEEEEECCHHHHHHHHHHh
Confidence 5789999999999999999999999999877766543221 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 78 ~g~~~~g 84 (98)
T 2cqp_A 78 NDRPIGS 84 (98)
T ss_dssp TTCEETT
T ss_pred CCCeeCC
Confidence 9876544
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=8.5e-13 Score=115.16 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=59.6
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCC---eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. ++ .+|||||+|++.++|++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~-----------------srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GR-----------------QSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SC-----------------EEEEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHH
Confidence 3679999999999999999999999999 88999987643 21 389999999999999999
Q ss_pred HHHhccccccc
Q 015730 364 VSHLHFMIMLF 374 (401)
Q Consensus 364 v~~ln~~~~~~ 374 (401)
++ +|+..+..
T Consensus 105 l~-~~g~~l~g 114 (136)
T 2hgl_A 105 LK-KDRESMGH 114 (136)
T ss_dssp HT-TTEEESSS
T ss_pred Hh-cCCCEECC
Confidence 99 88766443
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=107.85 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=57.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. ++ .+|||||+|++.++|++|+ .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~-----------------~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GR-----------------NNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CC-----------------CCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHHH-h
Confidence 36799999999999999999999999 899999986542 21 3899999999999999999 6
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
+|+..+.
T Consensus 75 ~~~~~~~ 81 (109)
T 2dnn_A 75 RNRMLMI 81 (109)
T ss_dssp TTTEEET
T ss_pred cCCCeEC
Confidence 8766543
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=105.77 Aligned_cols=72 Identities=26% Similarity=0.213 Sum_probs=61.4
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
++|||+|||.++|+++|+++|++||.|..|++.++ .+|||||+|++.++|++|++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999999642 28899999999999999999999
Q ss_pred ccccccccceEEEeec
Q 015730 369 FMIMLFFFSAFCLMFV 384 (401)
Q Consensus 369 ~~~~~~~~~~~~~~~~ 384 (401)
+..+.. ..+.+.+.
T Consensus 59 g~~~~g--~~l~V~~a 72 (101)
T 2hvz_A 59 GKVICG--SRVRVELS 72 (101)
T ss_dssp HSCSSS--CCCEEEES
T ss_pred CCeECC--cEEEEEEc
Confidence 876544 34555444
No 126
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.1e-12 Score=111.64 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=56.2
Q ss_pred hhheec--cCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV--~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++||| +||+.++++++|+++|++||.|..|+|.. .||||||+|++.++|++|++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 578999 67999999999999999999999998741 17899999999999999999
Q ss_pred Hhccccc
Q 015730 366 HLHFMIM 372 (401)
Q Consensus 366 ~ln~~~~ 372 (401)
.||+..+
T Consensus 82 ~lnG~~~ 88 (114)
T 2cq2_A 82 TLNGKEV 88 (114)
T ss_dssp HTTTCEE
T ss_pred HhCCCEE
Confidence 9999865
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=9.1e-13 Score=101.15 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=54.5
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+|||+|||.++++++|+++|++||.|..|++.+++.++ .++|||||+|++.++|++|++. ++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai~~-~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-----------------KRRGFCFITFKEEEPVKKIMEK-KY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS-----------------SSCCCEEEECSSSHHHHHHHTT-SS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCCEEEEEECCHHHHHHHHHh-CC
Confidence 68999999999999999999999999999987654322 1389999999999999999985 44
Q ss_pred cc
Q 015730 370 MI 371 (401)
Q Consensus 370 ~~ 371 (401)
..
T Consensus 63 ~~ 64 (75)
T 1iqt_A 63 HN 64 (75)
T ss_dssp CC
T ss_pred Ce
Confidence 33
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=106.97 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=57.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeE-EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++|+++|+++|+.||.|.. |+|+++. ++ ..+|||||+|++.++|++|++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~g-----------------~~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-QG-----------------RSTGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-SS-----------------CBCSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 3679999999999999999999999999987 8886542 11 138999999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
. ++..+..
T Consensus 76 ~-~~~~~~g 83 (104)
T 1wg5_A 76 K-HKERIGH 83 (104)
T ss_dssp T-TTCCSSS
T ss_pred h-CcchhCC
Confidence 7 6544433
No 129
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.34 E-value=8.6e-13 Score=108.79 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=62.2
Q ss_pred hhheeccCCCCcc------cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 288 ~rtVyV~nLP~d~------t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
.++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..+|||||+|++.++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g-----------------~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHAV 75 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT-----------------BSCCEEEEEECSSSHHH
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC-----------------CeeeEEEEEECCHHHHH
Confidence 6799999999999 7899999999999999999862 211 13899999999999999
Q ss_pred HHHHHhcccccccccc-eEEEeec
Q 015730 362 KAVSHLHFMIMLFFFS-AFCLMFV 384 (401)
Q Consensus 362 kAv~~ln~~~~~~~~~-~~~~~~~ 384 (401)
+|++.||+..+.. . .+.+.+.
T Consensus 76 ~Ai~~l~g~~~~g--~~~l~V~~a 97 (105)
T 2nlw_A 76 DAVKNADGYKLDK--QHTFRVNLF 97 (105)
T ss_dssp HHHHHCSSEECST--TCEEEEECS
T ss_pred HHHHHhCCcccCC--CceEEEEEc
Confidence 9999999876543 3 4555443
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-13 Score=111.82 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=61.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|.. +++++..+ + ..+|||||+|++.++|++|++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~- 76 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT----------G-------TNRKFGYVDFESAEDLEKALE- 76 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE----------E-------TTTTEEEEEESSHHHHHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHh-
Confidence 4689999999999999999999999999877 44433211 1 238999999999999999998
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
||+..+.. ..+.+.+..
T Consensus 77 l~g~~~~g--~~l~V~~a~ 93 (101)
T 1fj7_A 77 LTGLKVFG--NEIKLEKPK 93 (101)
T ss_dssp GGGCCBTT--BCCEEECCS
T ss_pred cCCcEECC--cEEEEEEcC
Confidence 99877654 345555443
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.2e-13 Score=113.75 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=57.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..+.++....++ ..+|||||+|++.++|++||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~G~afV~F~~~~~a~~Al~- 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNG-----------------KATGEGFVEFRNEADYKAALC- 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTS-----------------SEEEEEEEEBSSSHHHHHHHT-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCC-----------------CCCeEEEEEECCHHHHHHHHH-
Confidence 36899999999999999999999999999874443332211 138999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 86 ~~g~~~~g 93 (124)
T 1wel_A 86 RHKQYMGN 93 (124)
T ss_dssp SCSBCSTT
T ss_pred hCCCeECC
Confidence 98876554
No 132
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=110.29 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=55.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|. ++++.++.+.. .| ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~-----------~g---~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKS-----------YF---PPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCC-----------CS---CTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCC-----------CC---CcccEEEEEECCHHHHHHHHHh
Confidence 368999999999999999999999999999 77765432210 01 1389999999999999999999
Q ss_pred hc
Q 015730 367 LH 368 (401)
Q Consensus 367 ln 368 (401)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 84
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-12 Score=111.20 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=63.2
Q ss_pred hhheeccCCCCcccHHHHH----HHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~----~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
.++|||+||+.++++++|+ ++|++||.|..|++.+. + ..+|||||+|++.++|++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-------------~-------~~rG~aFV~F~~~~~A~~A 88 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-------------D-------DNSGKAYIVFATQESAQAF 88 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-------------C-------SSCCCEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-------------C-------CcCCEEEEEECCHHHHHHH
Confidence 6799999999999998876 69999999999988431 1 1389999999999999999
Q ss_pred HHHhcccccccccceEEEeecccC
Q 015730 364 VSHLHFMIMLFFFSAFCLMFVTQT 387 (401)
Q Consensus 364 v~~ln~~~~~~~~~~~~~~~~~~~ 387 (401)
++.||+..+.. ..+.+.+...+
T Consensus 89 i~~lng~~l~g--r~l~V~~a~~~ 110 (127)
T 2a3j_A 89 VEAFQGYPFQG--NPLVITFSETP 110 (127)
T ss_dssp HHHSTTCCCTT--SCCEEEECCCC
T ss_pred HHHHCCCEeCC--CEEEEEEccCc
Confidence 99999987654 35555555444
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=9.4e-13 Score=108.91 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=58.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCC---eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..++|||+|||.++|+++|+++|+.||. |..|+|++++. + ..+|||||+|++.++|++|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g-----------------~~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-G-----------------KRRGDALIEMESEQDVQKA 71 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-S-----------------TTCSEEEEEBSSHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-C-----------------CEeeEEEEEECCHHHHHHH
Confidence 4679999999999999999999999998 89999976532 1 1389999999999999999
Q ss_pred HHHhcccccc
Q 015730 364 VSHLHFMIML 373 (401)
Q Consensus 364 v~~ln~~~~~ 373 (401)
++ +++..+.
T Consensus 72 l~-~~~~~~~ 80 (107)
T 2lmi_A 72 LE-KHRMYMG 80 (107)
T ss_dssp HT-TTTCCSS
T ss_pred HH-hCcceeC
Confidence 99 8875543
No 135
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=105.71 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=60.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|. ++++.. ..+|||||+|++.++|++|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 367999999999999999999999999997 666532 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 76 l~g~~~~g--~~l~V~~a 91 (97)
T 2e5j_A 76 LQGLRLGT--DTLRVALA 91 (97)
T ss_dssp HTTCCSSS--SCCEEEEC
T ss_pred hCCCEECC--cEEEEEEc
Confidence 99887654 34554443
No 136
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.4e-12 Score=103.51 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=61.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhcc--CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~f--G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|++.++|++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHHH
Confidence 36899999999999999999999999 999988862 689999999999999999
Q ss_pred HHhcccccccccceEEEeecc
Q 015730 365 SHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~ 385 (401)
+.||+..+.. ..+.+.+..
T Consensus 69 ~~l~g~~~~g--~~l~v~~a~ 87 (99)
T 2cpd_A 69 KALNGKVLDG--SPIEVTLAK 87 (99)
T ss_dssp HHHSSEEETT--EEEEEECCC
T ss_pred HHhCCCEeCC--cEEEEEECC
Confidence 9999887654 455555543
No 137
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=108.16 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||. ..|+|++++ ++ + .+|||||+|++.++|++|| +
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g----------~-------~~G~afV~F~~~~~a~~Al-~ 73 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DG----------R-------VTGEADVEFATHEDAVAAM-A 73 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SS----------C-------EEEEEEEECSSSHHHHHHH-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CC----------C-------EeeEEEEEECCHHHHHHHH-H
Confidence 3679999999999999999999999995 499998764 21 1 3899999999999999999 4
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
+|+..+..
T Consensus 74 ~~~~~~~g 81 (102)
T 1wez_A 74 KDKANMQH 81 (102)
T ss_dssp TSSCCSSS
T ss_pred hCCCeECC
Confidence 77655443
No 138
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.33 E-value=1.4e-12 Score=118.08 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=64.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+++++..++. .+|||||+|++.++|.+|++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK-----------------HKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHHH
Confidence 457999999999999999999999999999999987643221 389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
|++..+.. ..+.+.+
T Consensus 187 l~g~~~~g--~~i~V~~ 201 (216)
T 2qfj_A 187 MNLFDLGG--QYLRVGK 201 (216)
T ss_dssp HTTCBCSS--SBCEEEE
T ss_pred ccCCEeCC--cEEEEEE
Confidence 99887544 3444444
No 139
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=6.1e-12 Score=109.62 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=63.7
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++|+++|+++|++||.|..|+++++ .+|||||+|++.++|++|++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999999642 28999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.||+..+.. ..+.+.+.
T Consensus 129 ~l~g~~~~g--~~l~v~~a 145 (150)
T 2i2y_A 129 ELDGRTLCG--CRVRVELS 145 (150)
T ss_dssp HHSSSCSSS--SCCEEEEC
T ss_pred HcCCCEECC--eEEEEEEc
Confidence 999977544 34554443
No 140
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=3e-12 Score=102.98 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=55.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
...+|||+|||.++|+++|+++|++||.|..|+|+++ .||||||+|++.++|++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~---- 63 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS---- 63 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH----
Confidence 4679999999999999999999999999999998642 28999999999999984
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
+++.........+.+.+
T Consensus 64 ~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 64 LCGEDLIIKGISVHISN 80 (89)
T ss_dssp HTTCEEEETTEEEEEEE
T ss_pred HcCCCcccCCEEEEEEE
Confidence 44443333334444443
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=3.9e-13 Score=109.53 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=54.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++++++|+++|+.||.|..|+|++++ ++ ..+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TG-----------------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-----------------CEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CccceEEEEECCHHHHHHHHh
Confidence 46899999999999999999999999999999998754 21 138999999999999999999
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=103.45 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.| .|..|+|+++ .++ ..+|||||+|++.++|++|++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g-----------------~~~g~afV~f~~~~~a~~A~~- 68 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHG-----------------NKTGYIFVDFSNEEEVKQALK- 68 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTS-----------------CEEEEEEEECSSHHHHHHHHH-
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCC-----------------CCceEEEEEECCHHHHHHHHH-
Confidence 46899999999999999999999999 9999999865 211 138999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 69 ~~g~~~~g--r~i~v~~a 84 (91)
T 2dgw_A 69 CNREYMGG--RYIEVFRE 84 (91)
T ss_dssp SCSEEETT--EEEEEEEE
T ss_pred hCCceeCC--cEEEEEEC
Confidence 99877554 34444443
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=111.92 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=67.0
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCe----eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V----~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++. ++ + .+|||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g----------r-------~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DG----------R-------PTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TS----------C-------EEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CC----------C-------EeeEEEEEECCHHHHHH
Confidence 35799999999999999999999999975 689987653 11 1 38999999999999999
Q ss_pred HHHHhcccccccccceEEEeecccCHHHHHHHHHHHhh
Q 015730 363 AVSHLHFMIMLFFFSAFCLMFVTQTNEIRTSFLADCRA 400 (401)
Q Consensus 363 Av~~ln~~~~~~~~~~~~~~~~~~~~e~R~~~~~~~~~ 400 (401)
||+. ++..+. .+++.+..+ +.++-...++.+++
T Consensus 84 Al~~-~~~~l~---gR~i~V~~a-~~~e~~~~~~~~~~ 116 (123)
T 2dha_A 84 ALRK-HKDLLG---KRYIELFRS-TAAEVQQVLNRFSS 116 (123)
T ss_dssp HHTT-TTEESS---SCEECCEEE-CHHHHHHHHHHHTT
T ss_pred HHHh-CCCeeC---CeEEEEEEC-CHHHHHHHHHhccC
Confidence 9986 554322 344444444 34444555655553
No 144
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.32 E-value=1.7e-12 Score=108.89 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=57.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999999999999852 27999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
||+..+..
T Consensus 71 l~g~~~~g 78 (115)
T 3beg_B 71 LDNTKFRS 78 (115)
T ss_dssp HTTCBCCC
T ss_pred hCCCEECC
Confidence 99887665
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3e-12 Score=100.83 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=57.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (401)
..++|||+|||.++++++|+++|++| | .|..+++.++ +|||||+|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEcC
Confidence 47899999999999999999999999 8 9999998531 789999999
Q ss_pred CHHHHHHHHHHhccccccc
Q 015730 356 SVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~ 374 (401)
+.++|++|+ .||+..+..
T Consensus 62 ~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 62 SVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SHHHHHHHG-GGTTCEETT
T ss_pred CHHHHHHHH-hcCCCEECC
Confidence 999999999 999877554
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-13 Score=114.82 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeE--------EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
...++|||+|||.++++++|+++|++||.|.. |+|++++.++ ..+|||||+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDP 67 (116)
Confidence 35789999999999999999999999999998 8887653322 1389999999999
Q ss_pred HHHHHHHHHhcccccccccceEEEeec
Q 015730 358 ELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 358 E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
++|++|++.||+..+.. ..+.+.+.
T Consensus 68 ~~A~~Ai~~l~g~~~~g--~~l~V~~a 92 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSG--NPIKVSFA 92 (116)
Confidence 99999999999876554 34444443
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=4.4e-12 Score=114.31 Aligned_cols=76 Identities=24% Similarity=0.212 Sum_probs=62.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..+|||+||++++|+++|+++|++||.|+.|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999985210 2789999999999999999999
Q ss_pred cccccccccceEEEeec
Q 015730 368 HFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~~ 384 (401)
|+..+......+.+.+.
T Consensus 105 nG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFS 121 (164)
T ss_dssp TTBCSSSSCSCEEEEEC
T ss_pred CCCEecCCCcEEEEEEe
Confidence 99887543234444443
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=2.2e-12 Score=112.66 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=61.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.++|||+|||.++|+++|+++|++||.|..|+++++..++. + ..+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~--------~-------~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP--------P-------QSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS--------C-------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC--------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987643220 0 1389999999999999999999
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
|++....
T Consensus 67 l~~~~~~ 73 (175)
T 3nmr_A 67 LHNMKVL 73 (175)
T ss_dssp HTTTCCC
T ss_pred hcCcEEc
Confidence 9886554
No 149
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.31 E-value=5.9e-12 Score=110.03 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=74.8
Q ss_pred CHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCC
Q 015730 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (401)
Q Consensus 249 d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~ 328 (401)
+.+.+..|| ......+. |..++...+.... .....++|||+|||.++|+++|+++|++||.|..|++.++..++.
T Consensus 60 ~~~~A~~A~-~~~~~~~~--g~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 134 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQ--GQSLKIRRPHDYQ--PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 134 (172)
T ss_dssp SHHHHHHHG-GGTTCEET--TEECEEECCSSCC--CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCS
T ss_pred CHHHHHHHH-HhCCcEec--CceeeecCCcccC--CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 455566666 33334443 4343333222211 112368999999999999999999999999999999987543221
Q ss_pred CCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
++|||||+|++.++|++|++.||+..+..
T Consensus 135 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 135 -----------------SKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp -----------------EEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred -----------------cceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 38999999999999999999999876554
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.30 E-value=6.5e-12 Score=112.03 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=61.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+++++..++. .+|||||+|++.++|.+|++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-----------------KRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC-----------------ccceEEEEECCHHHHHHHHHh
Confidence 357999999999999999999999999999999987643221 389999999999999999986
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
++..+.. ..+.+.+..
T Consensus 166 -~~~~~~G--~~i~v~~a~ 181 (196)
T 1l3k_A 166 -KYHTVNG--HNCEVRKAL 181 (196)
T ss_dssp -SCCEETT--EECEEEECC
T ss_pred -CCcEECC--EEEEEEecC
Confidence 4433322 344444433
No 151
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.30 E-value=2.7e-12 Score=103.29 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred hhhheeccCCCCcccHHHHH----HHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~----~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
..++|||+|||.++++++|+ ++|++||.|..|++.+. + ..+|||||+|++.++|++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-------------~-------~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-------------L-------KMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-------------H-------HHTTCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-------------C-------CcCcEEEEEeCCHHHHHH
Confidence 46899999999999999999 99999999999998521 1 138999999999999999
Q ss_pred HHHHhcccccccccceEEEeeccc
Q 015730 363 AVSHLHFMIMLFFFSAFCLMFVTQ 386 (401)
Q Consensus 363 Av~~ln~~~~~~~~~~~~~~~~~~ 386 (401)
|++.|++..+.. ..+.+.+...
T Consensus 67 A~~~l~g~~~~g--~~l~v~~a~~ 88 (97)
T 1nu4_A 67 ALRSMQGFPFYD--KPMRIQYAKT 88 (97)
T ss_dssp HHHHHTTCEETT--EECEEEECSS
T ss_pred HHHHhCCCEECC--cEEEEEEccC
Confidence 999999877644 4555555433
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.1e-12 Score=103.50 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=59.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCC-eeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~-V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||.++|+++|+++|++||. |..+.++ .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 3689999999999999999999999999 6666552 27899999999999999999
Q ss_pred Hhcc-cccccccceEEEeec
Q 015730 366 HLHF-MIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~-~~~~~~~~~~~~~~~ 384 (401)
.||+ ..+.. ..+.+.+.
T Consensus 63 ~l~g~~~~~g--~~l~v~~a 80 (93)
T 2cqh_A 63 TLSGKVELHG--KIMEVDYS 80 (93)
T ss_dssp HHTTTCEETT--EECEEEEC
T ss_pred HccCCeeECC--EEEEEEEc
Confidence 9998 55433 44555544
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.30 E-value=4.7e-12 Score=109.51 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=60.9
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|+.||.|..|++++++.++. ++|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~-----------------~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCc-----------------ceeEEEEEECCHHHHHHHHHHc
Confidence 47999999999999999999999999999999987543221 3899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++..+..
T Consensus 65 ~~~~~~g 71 (167)
T 1fxl_A 65 NGLRLQT 71 (167)
T ss_dssp TTCEETT
T ss_pred CCCccCC
Confidence 8866544
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=1.1e-11 Score=112.31 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=61.2
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|.+.++|++|++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM-----------------KHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC------------------CCCSEEEEEESSHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccCceEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999999999997654322 138999999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 89 ~l~~~~~~g 97 (216)
T 2qfj_A 89 QMNSVMLGG 97 (216)
T ss_dssp HHSSCCCC-
T ss_pred HccCCeeCC
Confidence 999876554
No 155
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=103.27 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=59.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.| ++++.. + + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~----------g-------~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-N----------G-------KSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-S----------S-------CBCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-C----------C-------CEeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999987 443321 1 1 1389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 73 l~g~~~~g--~~l~v~~a 88 (101)
T 2fc9_A 73 CNKREIEG--RAIRLELQ 88 (101)
T ss_dssp TSSEEETT--EEEEEEEC
T ss_pred hCCCEeCC--eEEEEEEc
Confidence 99876654 44555554
No 156
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=7.4e-12 Score=108.86 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=75.6
Q ss_pred CHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCC
Q 015730 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (401)
Q Consensus 249 d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~ 328 (401)
+.+.+..||+.. ..+ +|..|+........ .....++|||+|||.++++++|+++|+.||.|..|++.+++.++
T Consensus 54 ~~~~a~~A~~~~--~~~--~g~~i~v~~~~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g- 126 (167)
T 2cjk_A 54 KPSSVDEVVKTQ--HIL--DGKVIDPKRAIPRD--EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG- 126 (167)
T ss_dssp STHHHHHHHHSC--CEE--TTEECCCEECCCHH--HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS-
T ss_pred cHHHHHHHHhcc--ccc--CCeEcccccccchh--hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC-
Confidence 445556666642 233 34444433333222 22346799999999999999999999999999999997654322
Q ss_pred CCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEee
Q 015730 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~ 383 (401)
.++|||||+|++.++|++|++ +++..+.. ..+.+.+
T Consensus 127 ----------------~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~i~V~~ 162 (167)
T 2cjk_A 127 ----------------QSRGFGFVTYDSADAVDRVCQ-NKFIDFKD--RKIEIKR 162 (167)
T ss_dssp ----------------TTSEEEEEEESSHHHHHHHHH-CSEECSSS--SCEEEEE
T ss_pred ----------------ccceEEEEEECCHHHHHHHHh-CCCEEeCC--eEEEEee
Confidence 138999999999999999998 66554433 3454444
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.28 E-value=5.8e-12 Score=104.22 Aligned_cols=70 Identities=23% Similarity=0.175 Sum_probs=60.5
Q ss_pred hhheeccCCCCc-ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d-~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.+ +++++|+++|++||.|..|+|. +|||||+|++.++|++|++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 589999999999 9999999999999999999881 78999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 82 l~g~~~~g--~~l~V~~a 97 (110)
T 1wf1_A 82 ENGRVLAG--QTLDINMA 97 (110)
T ss_dssp HTTCEETT--EECCEEES
T ss_pred cCCCEECC--eEEEEEEC
Confidence 99877654 33444443
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.28 E-value=2.2e-12 Score=112.97 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||+++|+++|+++|+.|| |..|+|+++++ + ..+|||||+|++.++|++|| .
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g-----------------~srGfaFV~F~~~e~A~~Al-~ 104 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-G-----------------RVTGEADVEFATHEEAVAAM-S 104 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-S-----------------CSSCCCEEECSHHHHHHHHT-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-C-----------------CCceEEEEEeCCHHHHHHHH-h
Confidence 467999999999999999999999999 77999876542 1 13899999999999999999 7
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
+|+..+..
T Consensus 105 ~~g~~l~g 112 (139)
T 2hgn_A 105 KDRANMQH 112 (139)
T ss_dssp CCSCSSSS
T ss_pred hCCCEECC
Confidence 77655443
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=5.6e-12 Score=108.89 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=59.7
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
|+|||+|||.++|+++|+++|++||.|..|++++++. + ..+|||||+|.+.++|++|++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-----------N-------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999999986532 1 138999999999999999999998
Q ss_pred cccccc
Q 015730 369 FMIMLF 374 (401)
Q Consensus 369 ~~~~~~ 374 (401)
+..+..
T Consensus 63 ~~~~~g 68 (166)
T 3md3_A 63 GKQIEN 68 (166)
T ss_dssp TCEETT
T ss_pred CCccCC
Confidence 876654
No 160
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.27 E-value=8.2e-12 Score=113.05 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=60.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|+.||.|..|+|+++. ++ ..+|||||+|++.++|++|++.|
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g-----------------~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-----------------RSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TS-----------------SCSCCEEEEESCHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-----------------CEeeEEEEEeCCHHHHHHHHHHh
Confidence 5799999999999999999999999999999997653 11 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 150 ng~~l~G 156 (177)
T 2f3j_A 150 KGVPLDG 156 (177)
T ss_dssp TTCBCSS
T ss_pred CCCEECC
Confidence 9886554
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=7.4e-12 Score=115.59 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=62.4
Q ss_pred hhhheeccCCC-CcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP-~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+||+ .++|+++|+++|++||.|.+|+|+++ .+|||||+|++.++|++|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 36799999999 89999999999999999999999642 17899999999999999999
Q ss_pred HhcccccccccceEEEee
Q 015730 366 HLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~ 383 (401)
.||+..+.. ..+.+.+
T Consensus 61 ~lng~~~~g--~~l~v~~ 76 (205)
T 3tyt_A 61 HLNNNFMFG--QKMNVCV 76 (205)
T ss_dssp HHTTCEETT--EECEEEE
T ss_pred HhCCCEECC--ceEEEEE
Confidence 999877655 3344443
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=6e-12 Score=109.36 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=60.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|+.||.|..|++++++.++ ..+|||||+|.+.++|++|++.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG-----------------YSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTT-----------------EECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCC-----------------ccceEEEEEECCHHHHHHHHHhc
Confidence 5799999999999999999999999999999997653221 13899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++..+..
T Consensus 66 ~~~~~~g 72 (168)
T 1b7f_A 66 NGITVRN 72 (168)
T ss_dssp TTCEETT
T ss_pred CCCEeCC
Confidence 8876544
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=5.5e-12 Score=109.70 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=55.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.++|||+|||.++|+++|+++|+.||.|..|+++++..++. ++|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR-----------------SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS-----------------CCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC-----------------ccceEEEEEccHHHHHHHHhc
Confidence 368999999999999999999999999999999987543221 389999999999999999996
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.1e-12 Score=100.12 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=60.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEE-EecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vr-i~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++|+++|+++|+.||.|..|+ +++++. .|.|||+|++.++|++|++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALDK 73 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 67999999999999999999999999999996 654321 34499999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 74 l~g~~~~g--~~l~V~~a 89 (96)
T 2e44_A 74 LNGFQLEN--FTLKVAYI 89 (96)
T ss_dssp HTTCBCSS--CBCEEEEC
T ss_pred hCCCEECC--cEEEEEEc
Confidence 99877654 34554443
No 165
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=1.8e-12 Score=104.24 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=60.3
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...++|||+|||.++++++|+++|+.||.|..+ . .. + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-~~-------------~-------~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-QD-------------G-------KSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-ET-------------T-------EEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-CC-------------C-------CcceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999988766 1 11 1 138999999999999999999
Q ss_pred HhcccccccccceEEEeec
Q 015730 366 HLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 366 ~ln~~~~~~~~~~~~~~~~ 384 (401)
.|++..+.. ..+.+.+.
T Consensus 72 ~l~g~~~~g--~~l~v~~a 88 (96)
T 1fjc_A 72 EKQGAEIDG--RSVSLYYT 88 (96)
T ss_dssp HTTEEEETT--EEEEEEEC
T ss_pred HhCCCEECC--eEEEEEEc
Confidence 999876544 34555544
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.4e-11 Score=99.65 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=59.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|| ++|+++|+++|++||.|..|+|.. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 3679999996 899999999999999999999841 288999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
|++..+.. ..+.+.+.
T Consensus 69 l~g~~~~g--~~l~v~~a 84 (97)
T 1x5p_A 69 LNGTQVES--VQLKVNIA 84 (97)
T ss_dssp TTTEEETT--EEEEEECC
T ss_pred hCCCeECC--eEEEEEEC
Confidence 99887543 44555543
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=7.4e-12 Score=118.86 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=62.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|..|+++.. .+|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 3578999999999999999999999999999999632 168999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
||+..+.. +..+.+.|
T Consensus 264 l~g~~~~~-g~~l~v~~ 279 (282)
T 3pgw_A 264 LQGFKITQ-NNAMKISF 279 (282)
T ss_pred cCCcEeCC-CCEEEEEE
Confidence 99977662 23454444
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.26 E-value=1.3e-11 Score=107.30 Aligned_cols=64 Identities=27% Similarity=0.207 Sum_probs=57.2
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcce-EEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~-AFVEFes~E~A~kAv~~l 367 (401)
..|||+||++.+|+++|+++|++||.|..|+|... .+|| |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999988531 1677 999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 87 nG~~i~g 93 (130)
T 3zzy_A 87 DGQNIYN 93 (130)
T ss_dssp TTCEEET
T ss_pred CCCeecC
Confidence 9988765
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=2.4e-11 Score=106.76 Aligned_cols=109 Identities=22% Similarity=0.272 Sum_probs=73.2
Q ss_pred CHHHHHHhhhcCcceEEeccccccccCCCCCcchhhhhhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCC
Q 015730 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (401)
Q Consensus 249 d~e~I~eALk~S~~LEVsedg~kVRRk~Pl~e~~~~e~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~ 328 (401)
+.+.+..||+ .....+. |..|+...............++|||+|||.++|+++|+++|+.||.|..+ .. ++
T Consensus 63 ~~~~a~~A~~-l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~--~~- 133 (175)
T 1fje_B 63 SAEDLEKALE-LTGLKVF--GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ--DG- 133 (175)
T ss_dssp SHHHHHHHHH-GGGEEET--TEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CS--SS-
T ss_pred CHHHHHHHHh-cCCCEeC--CeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cC--CC-
Confidence 3445555553 3333443 33333322222222233457899999999999999999999999988766 11 11
Q ss_pred CCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEEeec
Q 015730 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
..+|||||+|++.++|.+|++.||+..+.. ..+.+.+.
T Consensus 134 ----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 171 (175)
T 1fje_B 134 ----------------KSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYYT 171 (175)
T ss_dssp ----------------SCCSEEEEECSSHHHHHHHHHHHTEEEETT--EEEEEEEC
T ss_pred ----------------CCceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEec
Confidence 138999999999999999999999876554 34555544
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=6.7e-12 Score=104.16 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=60.5
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCe----eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V----~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
..++|||+|||.++|+++|+++|++||.| ..+++. ++ ..+|||||+|++.++|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g-----------------~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TG-----------------RMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CS-----------------SSCSEEEEECSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CC-----------------ccceEEEEEECCHHHHHH
Confidence 36899999999999999999999999999 455543 11 138999999999999999
Q ss_pred HHHHhcccccccccceEEEeec
Q 015730 363 AVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 363 Av~~ln~~~~~~~~~~~~~~~~ 384 (401)
|++.|++..+.. ..+.+.+.
T Consensus 83 Ai~~l~g~~~~g--~~l~v~~a 102 (115)
T 2cpx_A 83 ALHLVNGYKLYG--KILVIEFG 102 (115)
T ss_dssp HHHHSTTCBCSS--CBCEEEEC
T ss_pred HHHHhCCCEeCC--cEEEEEEc
Confidence 999999877643 44555554
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=3.4e-12 Score=110.09 Aligned_cols=61 Identities=28% Similarity=0.385 Sum_probs=52.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCee--EEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~--~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++|||+|||+++|+++|+++|+.| .|. .|+|++++. + ..+|||||+|++.++|++||+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-G-----------------rsrGfaFV~F~~~e~A~~Al~ 102 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-G-----------------KITGEAFVQFASQELAEKALG 102 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-S-----------------SSCSEEEEEESSTTHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHHH
Confidence 5789999999999999999999999 566 899876542 2 138999999999999999998
Q ss_pred Hh
Q 015730 366 HL 367 (401)
Q Consensus 366 ~l 367 (401)
..
T Consensus 103 ~~ 104 (126)
T 2hgm_A 103 KH 104 (126)
T ss_dssp TT
T ss_pred HC
Confidence 53
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=2e-11 Score=105.05 Aligned_cols=63 Identities=25% Similarity=0.179 Sum_probs=55.8
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcce-EEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~-AFVEFes~E~A~kAv~~l 367 (401)
..|||+||++.+|+++|+++|++||.|..|+|.. + .|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999852 1 365 999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
|+..+..
T Consensus 83 nG~~i~g 89 (124)
T 2e5i_A 83 NGADIYA 89 (124)
T ss_dssp TTCCCBT
T ss_pred CCCEecC
Confidence 9987665
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.9e-12 Score=101.91 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=59.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|+.|+. |++++++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG-----------------SSKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999998864 5555443221 1389999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
||+..+.. ..+.+.+..
T Consensus 74 l~g~~~~g--~~l~V~~a~ 90 (102)
T 2fc8_A 74 MEDGEIDG--NKVTLDWAK 90 (102)
T ss_dssp HTTCEETT--EECEEEECC
T ss_pred hCCCeECC--eEEEEEEec
Confidence 99876554 345555543
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=1.3e-11 Score=110.18 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=56.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..++. .+|||||+|.+.++|++|++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR-----------------SRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCC-----------------ccceEEEEeCCHHHHHHHHhc
Confidence 578999999999999999999999999999999987643221 389999999999999999986
No 175
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.24 E-value=1.4e-11 Score=110.10 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=64.7
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++++++|+++|++||.|..|++.++..++ ..+|||||+|++.++|++|++.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-----------------LSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-----------------SEEEEEEEEESSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998754322 1389999999999999999999
Q ss_pred hcccccccccceEEEee
Q 015730 367 LHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~ 383 (401)
|++..+.. ..+.+.+
T Consensus 176 l~g~~~~g--~~l~v~~ 190 (198)
T 2yh0_A 176 LNGMQLGD--KKLLVQR 190 (198)
T ss_dssp HTTCEETT--EECEEEE
T ss_pred cCCCEECC--EEEEEEE
Confidence 99877644 3444444
No 176
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.24 E-value=1.1e-11 Score=127.12 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=66.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|++||.|+.|+|+.+..++. .+|||||+|++.++|++||+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK-----------------PRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC-----------------ccceEEEeeccHHHHHHHHHH
Confidence 357999999999999999999999999999999987643321 389999999999999999999
Q ss_pred hcccccccccceEEEeec
Q 015730 367 LHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~ 384 (401)
||+..+.. ..+.+.+.
T Consensus 164 lng~~i~g--r~i~V~~a 179 (437)
T 3pgw_S 164 ADGKKIDG--RRVLVDVE 179 (437)
T ss_pred cCCCEECC--EEEEEEEe
Confidence 99887654 34555554
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.23 E-value=2.9e-11 Score=115.35 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=64.4
Q ss_pred hhhheeccCCCCc-ccHHHHHHHHhccCCeeEEEEecCCC-CCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQT-SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~~lFs~fG~V~~Vri~~p~~-~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
..++|||+|||.+ +|+++|+++|+.||.|..|+|+++.. ++ ..+|||||+|.+.++|.+|+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg-----------------~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS-----------------FNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--------------------CCCEEEEEEESSHHHHHHHG
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC-----------------CCceEEEEEeCCHHHHHHHH
Confidence 4689999999999 99999999999999999999976432 11 13899999999999999999
Q ss_pred HHhcccccccccceEEEeecc
Q 015730 365 SHLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~ 385 (401)
.||+..+.. ..+.+.+..
T Consensus 272 -~l~g~~~~g--~~i~V~~a~ 289 (292)
T 2ghp_A 272 -QMNRSLLGN--REISVSLAD 289 (292)
T ss_dssp -GGTTEEETT--EEEEEEECC
T ss_pred -HhcCCEECC--cEEEEEEec
Confidence 999877543 455555544
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.23 E-value=1.2e-11 Score=98.40 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=59.6
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++++++|+++|++| .|..|++.+ .+|||||+|++.++|++|++.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR-----------------------NKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG-----------------------GGTEEEECCSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999 999998831 2899999999999999999999
Q ss_pred cccccccccceEEEee
Q 015730 368 HFMIMLFFFSAFCLMF 383 (401)
Q Consensus 368 n~~~~~~~~~~~~~~~ 383 (401)
|+..+.. ..+.+.+
T Consensus 61 ~g~~~~g--~~l~V~~ 74 (88)
T 1wg1_A 61 HQYSFRG--KDLIVQL 74 (88)
T ss_dssp TTEEETT--EEEEEEE
T ss_pred CCCeECC--cEEEEEE
Confidence 9877554 3444444
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=9.3e-12 Score=98.80 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=49.3
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
..++|||+|||.++++++|+++|++||.|..|+|+++ .+|||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH
Confidence 3689999999999999999999999999999998532 289999999999999764
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=3.3e-11 Score=114.51 Aligned_cols=88 Identities=27% Similarity=0.258 Sum_probs=70.3
Q ss_pred hhhhheeccCCCCcc-cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~-t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
...++|||+|||.++ |+++|+++|+.||.|..|+|.++.+ + ..+|||||+|++.++|.+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-G-----------------QLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-C-----------------CEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-C-----------------CcccEEEEEeCCHHHHHHHH
Confidence 346799999999995 9999999999999999999976531 1 13899999999999999999
Q ss_pred HHhcccccccccceEEEeecccCHHHHHH
Q 015730 365 SHLHFMIMLFFFSAFCLMFVTQTNEIRTS 393 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~~~~e~R~~ 393 (401)
+.||+..+.. ..+.+.+...+.+.|.+
T Consensus 244 ~~l~g~~~~g--~~l~v~~a~~~~~~~~~ 270 (284)
T 3smz_A 244 QQADGLSLGG--SHLRVSFCAPGPPGRSM 270 (284)
T ss_dssp HHHTTCEETT--EECEEEECCSSSCHHHH
T ss_pred HHhCCCccCC--eEEEEEEecCCCcccch
Confidence 9999888644 45666666555544443
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=2.4e-11 Score=115.76 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred hhhheeccCCCCcc---------cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 287 QSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 287 ~~rtVyV~nLP~d~---------t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
..++|||+||+.++ ++++|+++|++||.|+.|+|+. .||||||+|++.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~~~ 189 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFKYQ 189 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSH
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeCCH
Confidence 47899999999998 7999999999999999999973 289999999999
Q ss_pred HHHHHHHHHhccccccc----------ccceEEEeecccC
Q 015730 358 ELAEKAVSHLHFMIMLF----------FFSAFCLMFVTQT 387 (401)
Q Consensus 358 E~A~kAv~~ln~~~~~~----------~~~~~~~~~~~~~ 387 (401)
++|++|++.|++..++. ....+.+.+....
T Consensus 190 ~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 190 ANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 99999999999988731 3356676666544
No 182
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=97.71 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=54.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..| ++ ++.+ .+ ||||+|++.++|++|++ |
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~-------------------g~-~afV~f~~~~~a~~ai~-l 64 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK-------------------GV-FAIVEMGDVGAREAVLS-Q 64 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS-------------------CC-EEEEEESSHHHHHHHHT-C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC-------------------Cc-EEEEEECCHHHHHHHHh-c
Confidence 5799999999999999999999999999988 32 2210 13 99999999999999999 9
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++..+..
T Consensus 65 ~g~~~~g 71 (94)
T 2e5g_A 65 SQHSLGG 71 (94)
T ss_dssp SCCEETT
T ss_pred CCeEECC
Confidence 8876554
No 183
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=105.38 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=60.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeE--------EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E 358 (401)
..++|||+|||.++|+++|+++|+.||.|.. |++... + ..+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~-------------g-------~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE-------------G-------RMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE-------------T-------TTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC-------------C-------CcccEEEEEeCCHH
Confidence 3679999999999999999999999999876 333211 1 13899999999999
Q ss_pred HHHHHHHHhcccccccccceEEEeec
Q 015730 359 LAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 359 ~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
+|++|++.||+..+.. ..+.+.+.
T Consensus 104 ~A~~Ai~~lng~~~~g--~~l~V~~a 127 (143)
T 3egn_A 104 AAAKALKEANGYVLFG--KPMVVQFA 127 (143)
T ss_dssp HHHHHHHHHTTBEETT--EECEEEEC
T ss_pred HHHHHHHHhCCCEeCC--cEEEEEEC
Confidence 9999999999887654 34555554
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.17 E-value=1e-10 Score=105.14 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=58.2
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++++++|+++|+.|| .|..|+++.. .+|+|||+|++.++|.+|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 67899999999999999999999999 9999998531 178999999999999999999
Q ss_pred hcccccc
Q 015730 367 LHFMIML 373 (401)
Q Consensus 367 ln~~~~~ 373 (401)
||+..+.
T Consensus 178 l~g~~~~ 184 (198)
T 1qm9_A 178 LHNHDLG 184 (198)
T ss_dssp HTSSCCS
T ss_pred hcCCccC
Confidence 9998765
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.17 E-value=2.6e-11 Score=111.96 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=63.8
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCe--eEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V--~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++|||+|||.++|+++|+++|+.||.| ..|+++.++ + ..+|||||+|++.++|.+|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~-----------------~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--S-----------------ERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--S-----------------SSSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--C-----------------CCceEEEEEeCCHHHHHHHHH
Confidence 4579999999999999999999999999 899986432 0 126899999999999999999
Q ss_pred Hhccccccc--ccceEEEee
Q 015730 366 HLHFMIMLF--FFSAFCLMF 383 (401)
Q Consensus 366 ~ln~~~~~~--~~~~~~~~~ 383 (401)
.||+..+.. ...+|.+.|
T Consensus 184 ~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp HHTTCEECCSSSSSCEECEE
T ss_pred HhCCCCccCCCCCcceEEEe
Confidence 999987666 334566554
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.17 E-value=4e-11 Score=101.92 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=60.4
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|| ++|+++|+++|++||.|..|+|.. .+|||||+|++.++|++|++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 4689999996 799999999999999999999842 289999999999999999999
Q ss_pred hcccccccccceEEEeecc
Q 015730 367 LHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 367 ln~~~~~~~~~~~~~~~~~ 385 (401)
|++..+.. ..+.+.+..
T Consensus 93 lng~~~~g--~~l~V~~a~ 109 (121)
T 2bz2_A 93 LNGTQVES--VQLKVNIAR 109 (121)
T ss_dssp HTTCBCSS--CBCEEEECC
T ss_pred hCCCEECC--eEEEEEEeC
Confidence 99887644 445555543
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.4e-11 Score=104.76 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=61.7
Q ss_pred hheeccCC----CCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecC----HHH-
Q 015730 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (401)
Q Consensus 289 rtVyV~nL----P~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes----~E~- 359 (401)
..|||+|| ++++++++|+++|+.||+|..++++.++.++. .+|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-----------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL-----------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC-----------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------eeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999998876653 28999999996 333
Q ss_pred ---HHHHHH--HhcccccccccceEEEeecc
Q 015730 360 ---AEKAVS--HLHFMIMLFFFSAFCLMFVT 385 (401)
Q Consensus 360 ---A~kAv~--~ln~~~~~~~~~~~~~~~~~ 385 (401)
|.+|++ .+|+..+.. ..+.+.+..
T Consensus 66 ~kAA~kAi~~~~lng~~I~G--r~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMG--FKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETT--EEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecC--cEEEEEECc
Confidence 889988 566666554 356655543
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.16 E-value=8e-11 Score=111.54 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=58.7
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..|+|+++. ++ ..+|||||+|++.++|.+|++.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RG-----------------RATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TS-----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CC-----------------CcCcEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999998752 11 13899999999999999999999
Q ss_pred cccccc
Q 015730 368 HFMIML 373 (401)
Q Consensus 368 n~~~~~ 373 (401)
|+....
T Consensus 158 ~~~~~~ 163 (261)
T 3sde_A 158 GDGAFL 163 (261)
T ss_dssp HHSCEE
T ss_pred cCCeEE
Confidence 654443
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.15 E-value=5.1e-11 Score=110.61 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=59.5
Q ss_pred hhhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
..++|||+|||. ++++++|+++|++||.|..|+|++++ +|||||+|.+.++|++|++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 90 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHHH
Confidence 478999999999 99999999999999999999997531 6899999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 91 ~l~g~~~~g 99 (229)
T 2adc_A 91 HLNGHKLHG 99 (229)
T ss_dssp HHTTCBCSS
T ss_pred HhCCCeECC
Confidence 999876654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.14 E-value=3.5e-11 Score=108.15 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=59.1
Q ss_pred hhhheeccCCCC-cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
+.++|||+|||. ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 368999999999 99999999999999999999986431 6899999999999999999
Q ss_pred Hhccccccc
Q 015730 366 HLHFMIMLF 374 (401)
Q Consensus 366 ~ln~~~~~~ 374 (401)
.|++..+..
T Consensus 60 ~l~~~~~~g 68 (198)
T 1qm9_A 60 HLNGHKLHG 68 (198)
T ss_dssp HHTTCCCSS
T ss_pred HhCCCeecC
Confidence 999877654
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.12 E-value=3.8e-10 Score=107.14 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=61.0
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
.++|||+|||.++|+++|+++|+.||.|..|+++++..++. ++|||||+|.+.++|.+|++.|
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ-----------------SKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc-----------------cceEEEEEECCHHHHHHHHHHh
Confidence 57999999999999999999999999999999987643221 3899999999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++..+..
T Consensus 158 ~~~~~~g 164 (284)
T 3smz_A 158 LGKPLGP 164 (284)
T ss_dssp TTCEETT
T ss_pred CCCEeCC
Confidence 9876544
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.11 E-value=1.1e-10 Score=110.78 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=62.5
Q ss_pred hhhheeccCCCCcccHHHHH----HHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~----~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
..++|||+|||.++|+++|+ ++|+.||.|..|++++. + ..+|||||+|++.++|++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-------------~-------~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-------------L-------KMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-------------C-------CcceEEEEEECCHHHHHH
Confidence 47899999999999999977 89999999999998641 1 138999999999999999
Q ss_pred HHHHhcccccccccceEEEeec
Q 015730 363 AVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 363 Av~~ln~~~~~~~~~~~~~~~~ 384 (401)
|++.||+..+.. ..+.+.+.
T Consensus 68 A~~~l~g~~~~g--~~l~v~~a 87 (282)
T 3pgw_A 68 ALRSMQGFPFYD--KPMRIQYA 87 (282)
T ss_pred HHHHhcCCeeCC--cEEEEEEe
Confidence 999999876554 34444443
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=1.2e-10 Score=110.26 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=58.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..|++.+ .+|||||+|.+.++|++|++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~~~ 77 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAKAE 77 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999853 278999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 78 l~g~~i~g 85 (261)
T 3sde_A 78 LDGTILKS 85 (261)
T ss_dssp HTTCEETT
T ss_pred cCCcEECC
Confidence 98876544
No 194
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.09 E-value=1.9e-10 Score=95.69 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=61.2
Q ss_pred hhhheeccCCCC-----cccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 287 QSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 287 ~~rtVyV~nLP~-----d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
..++|++.|+-. +.++++|++.|++||.|..|+|+++..+++ ..+|||||+|++.++|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~----------------~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPD----------------DEAVRIFLEFERVESAI 70 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCT----------------TTSEEEEEEESSHHHHH
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCC----------------CCcEEEEEEECCHHHHH
Confidence 367899999952 236899999999999999999987532110 13899999999999999
Q ss_pred HHHHHhcccccccccceEEEeec
Q 015730 362 KAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 362 kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
+|++.||+..... ..+.+.+.
T Consensus 71 ~Ai~~lnG~~~~G--r~i~v~~a 91 (105)
T 2pe8_A 71 KAVVDLNGRYFGG--RVVKACFY 91 (105)
T ss_dssp HHHHHHTTCEETT--EECEEEEC
T ss_pred HHHHHHCCCEECC--cEEEEEEc
Confidence 9999999887544 34454443
No 195
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=1.5e-10 Score=115.52 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=56.5
Q ss_pred hhheeccC--CCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 288 SRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 288 ~rtVyV~n--LP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
.++|||+| |+.++|+++|+++|++||+|+.|+|.. .||||||+|++.++|++|++
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai~ 74 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAYV 74 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 67999999 578999999999999999999988731 28999999999999999999
Q ss_pred Hhcccccc
Q 015730 366 HLHFMIML 373 (401)
Q Consensus 366 ~ln~~~~~ 373 (401)
.||+..++
T Consensus 75 ~lnG~~~~ 82 (345)
T 3tht_A 75 TLNGKEVV 82 (345)
T ss_dssp HTTTCEEE
T ss_pred HhCCCccc
Confidence 99998775
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.05 E-value=3.3e-10 Score=98.82 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=55.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (401)
+.++|||+|||.++|+++|+++|++| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 47899999999999999999999999 6 677776642 2899999999
Q ss_pred CHHHHHHHHHHhccccccc
Q 015730 356 SVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~ 374 (401)
+.++|++|+ .|++..+..
T Consensus 60 ~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp SHHHHHHHG-GGTTCEETT
T ss_pred CHHHHHHHH-HhCCcEecC
Confidence 999999999 888776544
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=6.3e-10 Score=95.50 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=67.2
Q ss_pred hhhheeccCCCCc-ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecC-HHHHHHHH
Q 015730 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKAV 364 (401)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes-~E~A~kAv 364 (401)
..++|||+||+.+ ++.++|+++|+.||.|..|.+.+. ...|||+|.+ .++|.+|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHHH
Confidence 4789999999999 999999999999999999998643 2359999999 89999999
Q ss_pred HHhcccccccccceEEEeecccCHHH--HHHHHHHHhh
Q 015730 365 SHLHFMIMLFFFSAFCLMFVTQTNEI--RTSFLADCRA 400 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~~~~~e~--R~~~~~~~~~ 400 (401)
+.||+...........+.+-....|. =+.+++|+.+
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~GeeE~~yw~Ki~ed~~~ 111 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQE 111 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcEEeCcEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99976655553344444333322222 3455555543
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=4.3e-10 Score=92.68 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=54.3
Q ss_pred heeccCCCCcccHHH----HHHHHhcc-CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHH
Q 015730 290 IVVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAV 364 (401)
Q Consensus 290 tVyV~nLP~d~t~ed----L~~lFs~f-G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv 364 (401)
+|||.|||++++.++ |.++|+.| |+|..|. .|+|||+|++.++|++|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAERAQ 63 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHHHHH
Confidence 499999999999887 55899999 5998881 378999999999999999
Q ss_pred HHhcccccccccceEEEeec
Q 015730 365 SHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 365 ~~ln~~~~~~~~~~~~~~~~ 384 (401)
+.|++..+.. +.+.+.+.
T Consensus 64 ~~l~G~~l~g--r~i~v~~A 81 (96)
T 2diu_A 64 KRMENEDVFG--NRIIVSFT 81 (96)
T ss_dssp HHHTTCCSSS--SCCEEESS
T ss_pred HHhcCCccCC--ceEEEEec
Confidence 9999887555 34444443
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.99 E-value=8.6e-10 Score=105.07 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=58.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhccC-CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
.++|||+|||.++++++|+++|+.|| .|..|++++++. + ..+|||||+|.+.++|.+|++.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-----------N-------TSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-----------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 999999975432 1 1389999999999999999999
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 179 l~g~~~~g 186 (292)
T 2ghp_A 179 LNGLKIEG 186 (292)
T ss_dssp HTTCEETT
T ss_pred hCCCEeCC
Confidence 99877654
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.97 E-value=5.7e-10 Score=99.48 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=53.2
Q ss_pred hhhheeccCCCCcccHHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (401)
..|+|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 36899999999999999999999999 4 555555521 3899999999
Q ss_pred CHHHHHHHHHHhccccccc
Q 015730 356 SVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~ 374 (401)
+.++|++|+ .|++..+..
T Consensus 60 ~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CSHHHHHHG-GGTTEEETT
T ss_pred CHHHHHHHH-HhcCCEEcC
Confidence 999999999 888776543
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.6e-09 Score=90.09 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=57.0
Q ss_pred hhheeccCCCCcc-----------cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecC
Q 015730 288 SRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (401)
Q Consensus 288 ~rtVyV~nLP~d~-----------t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes 356 (401)
.++|+|.||-... ++++|+++|++||.|..|.|. ++ ..+|||||+|++
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--------------------~~~G~afV~f~~ 73 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--------------------HPDGVASVSFRD 73 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--------------------CTTCEEEEECSC
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--------------------CCCEEEEEEECC
Confidence 6899999993322 257999999999999999763 21 028999999999
Q ss_pred HHHHHHHHHHhcccccccccceEEEee
Q 015730 357 VELAEKAVSHLHFMIMLFFFSAFCLMF 383 (401)
Q Consensus 357 ~E~A~kAv~~ln~~~~~~~~~~~~~~~ 383 (401)
.++|++|++.||+..+.. ..+.+.+
T Consensus 74 ~~~A~~Ai~~lng~~~~g--r~l~v~~ 98 (112)
T 2dit_A 74 PEEADYCIQTLDGRWFGG--RQITAQA 98 (112)
T ss_dssp HHHHHHHHHHSTTCEETT--EECEEEE
T ss_pred HHHHHHHHHHcCCCEECC--cEEEEEE
Confidence 999999999999877553 3444444
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.93 E-value=1.5e-09 Score=90.19 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=58.2
Q ss_pred hhheeccCC--CCcc--------cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 288 SRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 288 ~rtVyV~nL--P~d~--------t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
++.|++.|+ +.+. ..++|++.|++||.|..|+|.++..... . ..+|||||+|++.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~--------~-------~~~G~~fV~f~~~ 69 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE--------V-------PGCGKIFVEFTSV 69 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC--------C-------TTTTEEEEEESSH
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC--------c-------CCcEEEEEEECCH
Confidence 456677776 3222 3579999999999999999976542110 0 1389999999999
Q ss_pred HHHHHHHHHhcccccccccceEEEeec
Q 015730 358 ELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 358 E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
++|++|++.||+..... ..+.+.+.
T Consensus 70 ~~A~~Ai~~lnG~~f~G--R~i~v~~~ 94 (105)
T 3v4m_A 70 FDCQKAMQGLTGRKFAN--RVVVTKYC 94 (105)
T ss_dssp HHHHHHHHHHTTCEETT--EECEEEEE
T ss_pred HHHHHHHHHhCCCEeCC--CEEEEEEe
Confidence 99999999999887544 34444443
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.92 E-value=3e-10 Score=99.71 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=54.8
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..++|||+|||.++|+++|+++|+.||.|..+.++ +. +.+ ..+|||||+|.+.++|++|+ +
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~----------~~~-------~~~g~afV~f~~~~~a~~A~-~ 72 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DV----------RTG-------TNRKFGYVDFESAEDLEKAL-E 72 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EE----------EEE-------TTTTEEEEEESSHHHHHHHH-H
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-EC----------CCC-------ccccEEEEEECCHHHHHHHH-h
Confidence 47899999999999999999999999987653222 11 111 23899999999999999999 5
Q ss_pred hccccccc
Q 015730 367 LHFMIMLF 374 (401)
Q Consensus 367 ln~~~~~~ 374 (401)
|++..+..
T Consensus 73 l~g~~~~g 80 (175)
T 1fje_B 73 LTGLKVFG 80 (175)
T ss_dssp GGGEEETT
T ss_pred cCCCEeCC
Confidence 98776554
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.8e-09 Score=86.29 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 298 ~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.++++++|+++|++||.|..|+|+. ..+|||||||++.++|++|++.+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC
Confidence 5689999999999999999999962 1289999999999999999998654
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.87 E-value=1.4e-09 Score=90.15 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHHHH-hccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccccccc
Q 015730 303 QNLMKIF-SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLF 374 (401)
Q Consensus 303 edL~~lF-s~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~ 374 (401)
++|++.| ++||.|..|+|+++.. + ..+|||||+|++.++|++|++.||+.....
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~-----------~-------~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLG-----------D-------HLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSS-----------S-------SSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhhccCCceEEEEEEeCCC-----------C-------CccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4445555 9999999999976431 1 138999999999999999999999877544
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.79 E-value=5.6e-09 Score=88.80 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=59.4
Q ss_pred hhhheeccCCC--Cc---ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 287 QSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 287 ~~rtVyV~nLP--~d---~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
.+++|++.|+- .+ -.+++|++.|++||.|..|+|.++..+... .+ ..+||+||+|++.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~------~~-------~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEE------DA-------EIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSST------TC-------EEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCccc------CC-------cceEEEEEEECCHHHHH
Confidence 46778888873 22 236899999999999999999876421000 00 12799999999999999
Q ss_pred HHHHHhcccccccccceEEEeec
Q 015730 362 KAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 362 kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
+|++.||+..... ..+.+.+.
T Consensus 86 ~Ai~~LnGr~f~G--R~i~v~~~ 106 (118)
T 3ue2_A 86 KAIQALNGRWFAG--RKVVAEVY 106 (118)
T ss_dssp HHHHHHTTCEETT--EECEEEEE
T ss_pred HHHHHHCCCEECC--cEEEEEEc
Confidence 9999999876443 34444443
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.64 E-value=3.9e-08 Score=83.13 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEE
Q 015730 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCL 381 (401)
Q Consensus 302 ~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~ 381 (401)
.++|++.|++||.|..|+|.++. .+|||||+|++.++|++|++.||+..... ..+.+
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--R~i~v 87 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPSIAAAIAAVNALHGRWFAG--KMITA 87 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSSHHHHHHHHHHHTTCEETT--EECEE
T ss_pred HHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEE
Confidence 57899999999999999985421 28999999999999999999999887544 34444
Q ss_pred eec
Q 015730 382 MFV 384 (401)
Q Consensus 382 ~~~ 384 (401)
.+.
T Consensus 88 ~~~ 90 (114)
T 3s6e_A 88 AYV 90 (114)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.10 E-value=4e-06 Score=77.07 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=52.9
Q ss_pred ccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceE
Q 015730 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAF 379 (401)
Q Consensus 300 ~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~ 379 (401)
...++|.+.|++||.|..|.|+++...++ ... ..+|++||+|++.++|++|++.||+..... ..+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------~~~------~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g--r~i 205 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------EDA------EIIVKIFVEFSIASETHKAIQALNGRWFAG--RKV 205 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------TTC------CEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------cCc------CceeEEEEEECCHHHHHHHHHHhcCceECC--eEE
Confidence 35679999999999999999987643221 110 138999999999999999999999876444 445
Q ss_pred EEeecc
Q 015730 380 CLMFVT 385 (401)
Q Consensus 380 ~~~~~~ 385 (401)
.+.+..
T Consensus 206 ~~~~~~ 211 (222)
T 3dxb_A 206 VAEVYD 211 (222)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 555443
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=8.5e-06 Score=66.42 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcccccccccceEEE
Q 015730 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFMIMLFFFSAFCL 381 (401)
Q Consensus 302 ~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~~~~~~~~~~~~ 381 (401)
..+|...|+.||+|..||+.. +.+||+|++.++|.+|++ ||+..+.. +.+.+
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~~sAlaAi~-mnG~~v~G--r~LkV 80 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEGSSALNVLS-LNGKELLN--RTITI 80 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSHHHHHHGGG-GTTCEETT--EEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECChHHHHHHHh-cCCeEeCC--eEEEE
Confidence 467999999999999999963 238999999999999998 99887655 34444
Q ss_pred eec
Q 015730 382 MFV 384 (401)
Q Consensus 382 ~~~ 384 (401)
.++
T Consensus 81 ~lk 83 (91)
T 2dnr_A 81 ALK 83 (91)
T ss_dssp EEC
T ss_pred EeC
Confidence 443
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=4.9e-05 Score=62.32 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred hhheeccCCCCc-----c----cHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHH
Q 015730 288 SRIVVAENLPED-----H----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (401)
Q Consensus 288 ~rtVyV~nLP~d-----~----t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E 358 (401)
..||+|.-++.+ . -..+|.+.|+.||+|..||+..+ + +||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------------------~--~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------------------Q--MLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------------------E--EEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------------------c--EEEEEcChH
Confidence 457777665421 1 13579999999999999999742 2 899999999
Q ss_pred HHHHHHHHhccccccc
Q 015730 359 LAEKAVSHLHFMIMLF 374 (401)
Q Consensus 359 ~A~kAv~~ln~~~~~~ 374 (401)
+|.+|++ ||+..+..
T Consensus 70 sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKG 84 (95)
T ss_dssp HHHHHHH-GGGSEETT
T ss_pred HHHHHHh-cCCeeeCC
Confidence 9999998 99887766
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0025 Score=53.71 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=56.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhcc-----CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~f-----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~ 361 (401)
..|+|-+-|||..++...|+.+.+.+ |.|+.|-++-+ -+-|+|||++...|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 36899999999999999999999999 99999988632 345999999999999
Q ss_pred HHHHHhccccccc
Q 015730 362 KAVSHLHFMIMLF 374 (401)
Q Consensus 362 kAv~~ln~~~~~~ 374 (401)
||.-.|++.....
T Consensus 77 KasLaL~G~ef~g 89 (117)
T 2l9w_A 77 KMLMILNGSQFQG 89 (117)
T ss_dssp HHHHHHSSEEETT
T ss_pred HHHhhcCCeeecC
Confidence 9999999887664
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.13 E-value=0.0071 Score=49.77 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=43.1
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
.+++ +||......||+++|+.||-|.--.| +...|||.|.+++.|..|++.++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-------------------------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-------------------------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE-------------------------cCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999996543233 14579999999999999999874
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.013 Score=48.67 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=46.3
Q ss_pred hhheeccCCCCcccHHHHHHHHhc-c----CCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHH
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSA-V----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~-f----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~k 362 (401)
.++|.|+|||.+++++.|+-+|+. - |.|..|... .+.|+|+|.+.+.|++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~~~AvItF~d~~va~r 62 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------GCGGVLTFREPADAER 62 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------TTEEEEEESSHHHHHH
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------CCcEEEEEcChHHHHH
Confidence 568999999999999999999987 2 688888763 2459999999999999
Q ss_pred HHHH
Q 015730 363 AVSH 366 (401)
Q Consensus 363 Av~~ 366 (401)
.++.
T Consensus 63 VL~k 66 (104)
T 2dhx_A 63 VLAQ 66 (104)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9886
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.80 E-value=0.0038 Score=64.42 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred hhhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVS 365 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~ 365 (401)
...|+|+|. ++...++.+|.++|++||.|.++-+-.. ...||+|||.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------------~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------------FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------------SSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------------CCeEEEEEeCCHHHHHHHHh
Confidence 346899997 7999999999999999999999987321 14589999999999988763
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.75 E-value=0.0038 Score=51.53 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=42.7
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLH 368 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln 368 (401)
.+++ +||.+....||+.+|+.||-|.--.| +...|||.|.+++.|..|++.++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi-------------------------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE-------------------------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE-------------------------cCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999994432222 14579999999999999999874
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.16 E-value=0.052 Score=46.11 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
..+.|.|-+||... ...|.+.|++||+|..... +. +..+..|.|+++.+|++||..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHHh
Confidence 46788888998885 6677888999999988875 21 145789999999999999985
Q ss_pred hccccc
Q 015730 367 LHFMIM 372 (401)
Q Consensus 367 ln~~~~ 372 (401)
|+.++
T Consensus 79 -NG~ii 83 (119)
T 1wwh_A 79 -DGRIF 83 (119)
T ss_dssp -TTCEE
T ss_pred -CCeEe
Confidence 55544
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.96 E-value=0.049 Score=44.06 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=54.1
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhcc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
.|+|.+||.++|++++.+.++..+++...+.+..+.+.+ . .. -.-|||.|.+.|++....+.+++
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~---------~---~~---~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY---------P---HM---YARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST---------T---CC---CEEEEEEESSSHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC---------C---Cc---ceEEEEEeCCHHHHHHHHHHhCC
Confidence 588999999999999999999999888877653221110 0 00 23499999999999999999988
Q ss_pred ccccc
Q 015730 370 MIMLF 374 (401)
Q Consensus 370 ~~~~~ 374 (401)
.....
T Consensus 68 ~~F~D 72 (91)
T 1uw4_A 68 YVFLD 72 (91)
T ss_dssp CEEEC
T ss_pred cEEEc
Confidence 76555
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.14 E-value=0.068 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.4
Q ss_pred cceEEEEecCHHHHHHHHHHhcc
Q 015730 347 KLHAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln~ 369 (401)
+|||||+|.+.++|++|++.+++
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcc
Confidence 89999999999999999998864
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.99 E-value=0.15 Score=42.26 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=49.4
Q ss_pred hheeccCCCCcc----cH-HHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHH
Q 015730 289 RIVVAENLPEDH----CH-QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (401)
Q Consensus 289 rtVyV~nLP~d~----t~-edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kA 363 (401)
.+|+|.||+.++ .. +.++++|..|+.+.....++ +.+ =..|.|.+.++|.+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----------------------SFR-Rirv~F~~~~~A~~A 62 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----------------------SFK-RVRINFSNPLSAADA 62 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----------------------TTT-EEEEECSSTTHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----------------------cce-EEEEEeCChHHHHHH
Confidence 579999998765 22 67899999999987766542 012 267999999999999
Q ss_pred HHHhcccccccc
Q 015730 364 VSHLHFMIMLFF 375 (401)
Q Consensus 364 v~~ln~~~~~~~ 375 (401)
-.+|++...+..
T Consensus 63 R~~Lh~~~f~g~ 74 (104)
T 1wey_A 63 RLRLHKTEFLGK 74 (104)
T ss_dssp HHTSTTSEETTE
T ss_pred HHHhccceecCc
Confidence 999988776553
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.19 E-value=0.28 Score=40.10 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=49.4
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
+-.|+|..||.++|++++.+.++.+=.+.+.+.+..+.+ .+. .. -.-|||.|.+.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s----------~~~--~~---~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS----------LYP--HL---YSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS----------SCC--SC---CCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC----------CCC--Cc---ceEEEEEeCCHHHHHHHHHHc
Confidence 346899999999999998887776555544333211100 110 11 123899999999999999999
Q ss_pred ccccccc
Q 015730 368 HFMIMLF 374 (401)
Q Consensus 368 n~~~~~~ 374 (401)
++.....
T Consensus 74 ~g~~F~D 80 (97)
T 2l08_A 74 DGYIFLD 80 (97)
T ss_dssp TTEEEEC
T ss_pred CCcEEEe
Confidence 8887665
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.95 E-value=0.52 Score=40.62 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=43.3
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeE-EEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..|.|=++|.+.+. .|-+.|++||.|.. +.+.++.. ... ......++. +.|.+..+..|.|++..+|.+||.+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~-~~~-~~~~~~k~y--P~f~g~NWikItYds~~~A~rAL~~- 81 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQ-AMT-VGLQDRQFV--PIFSGNSWTKITYDNPASAVDALLE- 81 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-------------CC--CCCEETTEEEEEBSSHHHHHHHHTT-
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeecccccccc-ccc-ccccccccc--CccCCCcEEEEEcCCHHHHHHHHHh-
Confidence 34566689777655 45568999999854 22211100 000 000001111 2233467889999999999999984
Q ss_pred cccc
Q 015730 368 HFMI 371 (401)
Q Consensus 368 n~~~ 371 (401)
|+.+
T Consensus 82 NG~i 85 (132)
T 3p3d_A 82 NGAV 85 (132)
T ss_dssp TTCE
T ss_pred CCeE
Confidence 4444
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.96 E-value=1.3 Score=45.88 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=43.4
Q ss_pred eeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHhccc
Q 015730 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHLHFM 370 (401)
Q Consensus 291 VyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ln~~ 370 (401)
||+-.++..+...+|+++|+.||.|.-.++ +..+|||.|.+.+.|..+++.++..
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~V~wi-------------------------ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCEEEEC-------------------------SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-------------------------cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 444459888889999999999996543333 1457999999999999999998643
No 223
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=83.15 E-value=0.27 Score=44.24 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCChHHHHHHhhcccccccCCCcCcCHHHHHhhcc-----CC-C--Cceecccccc
Q 015730 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (401)
Q Consensus 192 ~~~~e~~~kI~~QvEfYFSd~NL~~D~fL~~~i~~-----~~-e--G~Vpi~~i~s 239 (401)
.++.+.++.+.+.. .|+...+..=..++..+.. +. + |+|...-+..
T Consensus 30 ~l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 30 RLSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp -CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 36777777776553 3444333321222333322 23 5 9998877766
No 224
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=82.71 E-value=0.45 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.7
Q ss_pred cceEEEEecCHHHHHHHHHHh-ccc
Q 015730 347 KLHAFVEYESVELAEKAVSHL-HFM 370 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~l-n~~ 370 (401)
+|+++|||.+.++|++|++++ |+.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~ 37 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDN 37 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCC
Confidence 899999999999999999999 443
No 225
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=80.51 E-value=0.78 Score=50.83 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=65.3
Q ss_pred CCChHHHHHHhhcccccccCCCcCcCH----HHHHhhccC--CCCceecccccchh-hHHhhhcC------------HHH
Q 015730 192 GLNDESIQKVLNQVEYYFSDLNLATTD----HLIRFILKD--PEGYVPISTVASFK-KIKAIISS------------HSH 252 (401)
Q Consensus 192 ~~~~e~~~kI~~QvEfYFSd~NL~~D~----fL~~~i~~~--~eG~Vpi~~i~sFk-KvK~lt~d------------~e~ 252 (401)
..++|..+.|+..|+|.|||+=|.-.. +|+--+.++ ..|.||+.+|+.+. |+..+++- +..
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 335778899999999999998776654 444444454 45899999999996 77777752 245
Q ss_pred HHHhhhcCcceEEeccccccccCCCCCcc
Q 015730 253 LASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (401)
Q Consensus 253 I~eALk~S~~LEVsedg~kVRRk~Pl~e~ 281 (401)
|..|...+..+.+++.+ -|+|..|++.+
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 66666666555577666 99999999864
No 226
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=78.39 E-value=0.94 Score=28.02 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.6
Q ss_pred cccccCCCCCCCCCCCC
Q 015730 37 FSRLNAKAPEFVPTRNP 53 (401)
Q Consensus 37 ~~~~~~~~p~~~p~~~~ 53 (401)
.|+|.+.||||+|+.=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 58899999999998754
No 227
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=78.31 E-value=0.9 Score=36.85 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhhheeccCCCCcccHHH
Q 015730 287 QSRIVVAENLPEDHCHQN 304 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~ed 304 (401)
...+|||+|||.++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 345799999999998764
No 228
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=76.80 E-value=0.5 Score=45.83 Aligned_cols=7 Identities=29% Similarity=0.786 Sum_probs=3.2
Q ss_pred CCCCCCh
Q 015730 189 QHGGLND 195 (401)
Q Consensus 189 ~~~~~~~ 195 (401)
+.+++-.
T Consensus 55 GKGGVGK 61 (314)
T 3fwy_A 55 GKGGIGK 61 (314)
T ss_dssp CSTTSSH
T ss_pred CCCccCH
Confidence 4455543
No 229
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=66.16 E-value=1.9 Score=41.18 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.5
Q ss_pred cCCCCCChHHHHHHhhccccc-c-cC
Q 015730 188 HQHGGLNDESIQKVLNQVEYY-F-SD 211 (401)
Q Consensus 188 ~~~~~~~~e~~~kI~~QvEfY-F-Sd 211 (401)
.....++..++..+++-||-| | |.
T Consensus 31 ~~h~plspr~l~~~~k~ve~~g~~sP 56 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTKGLRSP 56 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCTTSS
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCCh
Confidence 588999999999999999766 3 55
No 230
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=61.26 E-value=1.7 Score=43.32 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=3.9
Q ss_pred HHHHHHhhcc
Q 015730 196 ESIQKVLNQV 205 (401)
Q Consensus 196 e~~~kI~~Qv 205 (401)
+.+++.++.|
T Consensus 61 ~~~~~~~~~L 70 (371)
T 3tla_A 61 NRFFRGVEFL 70 (371)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 231
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=60.87 E-value=3.5 Score=37.30 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.8
Q ss_pred hccCCCCceecccccchhhHH--hhhcCHHHHHHhhhcCcc--eEEeccccccccCC
Q 015730 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (401)
Q Consensus 224 i~~~~eG~Vpi~~i~sFkKvK--~lt~d~e~I~eALk~S~~--LEVsedg~kVRRk~ 276 (401)
+.+|.+|||+++.++. .+.+ ....+.++|.++++.+.+ .++++ .+||-.+
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~q 75 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRARY 75 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEESS
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEecc
Confidence 3478999999999998 3333 233467788888876553 66663 3676554
No 232
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=57.07 E-value=2.2 Score=40.93 Aligned_cols=6 Identities=0% Similarity=0.750 Sum_probs=2.6
Q ss_pred CChHHH
Q 015730 193 LNDESI 198 (401)
Q Consensus 193 ~~~e~~ 198 (401)
++++++
T Consensus 29 ld~~tV 34 (379)
T 3uau_A 29 IDEKTV 34 (379)
T ss_dssp SCHHHH
T ss_pred ccHHHH
Confidence 344444
No 233
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=51.51 E-value=3.1 Score=38.22 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=9.4
Q ss_pred hhhhheeccCCCCcccHHHHHHHH
Q 015730 286 LQSRIVVAENLPEDHCHQNLMKIF 309 (401)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~~lF 309 (401)
+..++|-+. ........|++++
T Consensus 162 L~gk~v~~~--~g~~~~~~l~~~~ 183 (291)
T 2yjp_A 162 LKDQTLLVN--KGTTADAFFTKSH 183 (291)
T ss_dssp GTTSEEEEE--TTSHHHHHHHHHC
T ss_pred hCCCEEEEe--cCCcHHHHHHHhC
Confidence 344555432 2233344555544
No 234
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=48.98 E-value=3.6 Score=39.95 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.8
Q ss_pred HHHHHHHHhccCC
Q 015730 302 HQNLMKIFSAVGS 314 (401)
Q Consensus 302 ~edL~~lFs~fG~ 314 (401)
...|+++=..||.
T Consensus 216 qkaikeygkdygv 228 (564)
T 4faj_A 216 QKAIKEYGKDYGV 228 (564)
T ss_dssp HHHHHHHGGGTTS
T ss_pred HHHHHHhccccCc
Confidence 3455555555553
No 235
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=48.61 E-value=7.4 Score=38.43 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=18.2
Q ss_pred hheeccCCCCcccHHHHHHHHhc
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSA 311 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~ 311 (401)
...+|+|||++.+..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999988877777763
No 236
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=46.10 E-value=4.3 Score=39.96 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=6.1
Q ss_pred HhhcccccccC
Q 015730 201 VLNQVEYYFSD 211 (401)
Q Consensus 201 I~~QvEfYFSd 211 (401)
++.-.+||+|-
T Consensus 85 lR~~FDYfLs~ 95 (332)
T 2es4_D 85 VREFFDYCLTA 95 (332)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 44455666663
No 237
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=44.36 E-value=4.7 Score=42.54 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=4.6
Q ss_pred ccccCCCCC--CCCCCC
Q 015730 38 SRLNAKAPE--FVPTRN 52 (401)
Q Consensus 38 ~~~~~~~p~--~~p~~~ 52 (401)
.|+||--|. |.|..+
T Consensus 447 ~Ri~aedp~~~f~p~~G 463 (587)
T 3jrx_A 447 ARITSENPDEGFKPSSG 463 (587)
T ss_dssp EEEEC----------CC
T ss_pred EeecccCccccCCCCCc
Confidence 478887773 666544
No 238
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=44.10 E-value=3.4 Score=36.53 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=9.1
Q ss_pred HHHHhhcccccccCC
Q 015730 198 IQKVLNQVEYYFSDL 212 (401)
Q Consensus 198 ~~kI~~QvEfYFSd~ 212 (401)
....+--|.+|||++
T Consensus 58 DvF~RyFLs~YfS~~ 72 (161)
T 4ec6_A 58 DTFGRYFLTYYFSQE 72 (161)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred eeeehhhhHHHhCCC
Confidence 344555566788864
No 239
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=42.37 E-value=5.3 Score=37.99 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.4
Q ss_pred cCHHHHHHHHHHhcc
Q 015730 355 ESVELAEKAVSHLHF 369 (401)
Q Consensus 355 es~E~A~kAv~~ln~ 369 (401)
.+.+++..+++.|..
T Consensus 249 ~~~~~~~~~~~~l~~ 263 (299)
T 3cio_A 249 NTAKEVSLSMQRLEQ 263 (299)
T ss_dssp SCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 345667777776654
No 240
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=42.35 E-value=27 Score=33.60 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=23.0
Q ss_pred hheeccCCCC----cccHHHHHHHHhccCCeeEEEE
Q 015730 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (401)
Q Consensus 289 rtVyV~nLP~----d~t~edL~~lFs~fG~V~~Vri 320 (401)
.-|++-|+|. +.+.+.|.++..++..|.-|+-
T Consensus 151 lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKd 186 (315)
T 3na8_A 151 VPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKE 186 (315)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEE
T ss_pred CcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEEC
Confidence 3466777774 5677888888677888877765
No 241
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=41.74 E-value=5.5 Score=37.36 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.7
Q ss_pred eEEEEecCHHHHHHHHHHhcc
Q 015730 349 HAFVEYESVELAEKAVSHLHF 369 (401)
Q Consensus 349 ~AFVEFes~E~A~kAv~~ln~ 369 (401)
+-.|.|.|.+.++..++.+..
T Consensus 211 ~d~v~ftS~~~v~~f~~~~~~ 231 (286)
T 1jr2_A 211 PASITFFSPSGLTYSLKHIQE 231 (286)
T ss_dssp CSEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEChHHHHHHHHHHhh
Confidence 567999999999888876643
No 242
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=37.95 E-value=6.6 Score=36.28 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 015730 388 NEIRTSFLAD 397 (401)
Q Consensus 388 ~e~R~~~~~~ 397 (401)
.++|+.|+++
T Consensus 190 ~~~Rr~~~~~ 199 (223)
T 3dfz_A 190 KSRKHELLTE 199 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 243
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=36.58 E-value=7.4 Score=35.24 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.6
Q ss_pred cHHHHHHHH
Q 015730 301 CHQNLMKIF 309 (401)
Q Consensus 301 t~edL~~lF 309 (401)
+.+.|+++.
T Consensus 120 ~~~~i~~l~ 128 (236)
T 2px7_A 120 SRGLVARVL 128 (236)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 334444433
No 244
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=36.45 E-value=7.4 Score=35.23 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHhc
Q 015730 356 SVELAEKAVSHLH 368 (401)
Q Consensus 356 s~E~A~kAv~~ln 368 (401)
+.++..++|+.|.
T Consensus 171 ~~~ell~~l~~L~ 183 (221)
T 2c0d_A 171 NVQEVLRTIDSII 183 (221)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 4667777777764
No 245
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=36.34 E-value=7.5 Score=35.51 Aligned_cols=10 Identities=0% Similarity=-0.293 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 015730 358 ELAEKAVSHL 367 (401)
Q Consensus 358 E~A~kAv~~l 367 (401)
..+...++..
T Consensus 212 ~~~~~~~~~~ 221 (283)
T 2yln_A 212 LAVLDYLKKN 221 (283)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 3444545544
No 246
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=35.39 E-value=7.9 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=10.5
Q ss_pred HHHHHHhhhcCcceEEe
Q 015730 250 HSHLASVLRKSSKLVVS 266 (401)
Q Consensus 250 ~e~I~eALk~S~~LEVs 266 (401)
++.|++.|.++..+.|-
T Consensus 122 Id~ia~~i~~~~~vvIl 138 (315)
T 1uoz_A 122 IDAVASGLGSSPATIIV 138 (315)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhCCCceEEEE
Confidence 46777777766654444
No 247
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=35.33 E-value=7.9 Score=40.55 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcccc
Q 015730 357 VELAEKAVSHLHFMI 371 (401)
Q Consensus 357 ~E~A~kAv~~ln~~~ 371 (401)
.++..+|+.+++...
T Consensus 302 ~~~y~~AI~~a~~~~ 316 (560)
T 3odm_A 302 EEATKHAVRELKEKI 316 (560)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCC
Confidence 467777888777544
No 248
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=34.83 E-value=6.3 Score=33.12 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=4.1
Q ss_pred cCCCCceec
Q 015730 226 KDPEGYVPI 234 (401)
Q Consensus 226 ~~~eG~Vpi 234 (401)
.+.+|.+..
T Consensus 77 ~d~dG~Ld~ 85 (121)
T 3fia_A 77 MNNDGRMDQ 85 (121)
T ss_dssp TTCSSEECH
T ss_pred CCCCCcCCH
Confidence 444554443
No 249
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=34.71 E-value=8.2 Score=38.96 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=11.9
Q ss_pred cHHHHHHH---HhccCCeeEEEEe
Q 015730 301 CHQNLMKI---FSAVGSVKTIRTC 321 (401)
Q Consensus 301 t~edL~~l---Fs~fG~V~~Vri~ 321 (401)
+.++|+++ ..++|-+.-+.-.
T Consensus 255 s~~~l~~i~~la~~~~~~li~Dea 278 (500)
T 3tcm_A 255 AEENQYDIVKFCKNEGLVLLADEV 278 (500)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CHHHHHHHHHHHHHcCCEEEEecC
Confidence 44555555 6777766555433
No 250
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=34.18 E-value=8.5 Score=37.74 Aligned_cols=7 Identities=0% Similarity=0.040 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 015730 303 QNLMKIF 309 (401)
Q Consensus 303 edL~~lF 309 (401)
+.|+.+.
T Consensus 194 ~~I~~L~ 200 (332)
T 4axs_A 194 DAIKQNV 200 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3344433
No 251
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=34.16 E-value=8.5 Score=37.91 Aligned_cols=10 Identities=0% Similarity=0.002 Sum_probs=5.3
Q ss_pred cHHHHHHHHh
Q 015730 301 CHQNLMKIFS 310 (401)
Q Consensus 301 t~edL~~lFs 310 (401)
+..++++++.
T Consensus 263 ~~~~~~~~i~ 272 (386)
T 1wue_A 263 SLKDCQVALA 272 (386)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3455555554
No 252
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=33.51 E-value=8.8 Score=33.39 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=7.6
Q ss_pred CCChHHHHHHhhccc
Q 015730 192 GLNDESIQKVLNQVE 206 (401)
Q Consensus 192 ~~~~e~~~kI~~QvE 206 (401)
+++++.+-.+..-+|
T Consensus 32 g~~e~elL~lAAs~E 46 (156)
T 1svj_A 32 GVDEKTLADAAQLAS 46 (156)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh
Confidence 345444445555555
No 253
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=33.48 E-value=8.8 Score=37.92 Aligned_cols=10 Identities=20% Similarity=-0.014 Sum_probs=1.6
Q ss_pred CCCCCCCccc
Q 015730 155 HHNNNNSHHQ 164 (401)
Q Consensus 155 ~~~~~~~~~~ 164 (401)
..+|....|+
T Consensus 12 ~~~~~~~~mk 21 (393)
T 1wuf_A 12 GLVPRGSHMY 21 (393)
T ss_dssp -------CEE
T ss_pred CccCCCCcCE
Confidence 3456555554
No 254
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=33.43 E-value=28 Score=29.93 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHHhhccCCCCceeccccc
Q 015730 219 HLIRFILKDPEGYVPISTVA 238 (401)
Q Consensus 219 fL~~~i~~~~eG~Vpi~~i~ 238 (401)
.|++.+..+.+|.|.+.-++
T Consensus 50 ~l~~~~D~d~~G~I~f~EF~ 69 (174)
T 2i7a_A 50 SLVALMELKVNGRLDQEEFA 69 (174)
T ss_dssp HHHHHHCSSCSSEECHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHH
Confidence 46666677888988765544
No 255
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=33.41 E-value=6.5 Score=34.25 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=14.7
Q ss_pred HHHHhhccCCCCceecccccch
Q 015730 219 HLIRFILKDPEGYVPISTVASF 240 (401)
Q Consensus 219 fL~~~i~~~~eG~Vpi~~i~sF 240 (401)
.+++.+..+.+|+|...-+..+
T Consensus 61 ~~F~~~D~d~~G~Is~~El~~~ 82 (197)
T 3pm8_A 61 NIFIALDVDNSGTLSSQEILDG 82 (197)
T ss_dssp HHHHHHCTTCSSEECHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHH
Confidence 4455566788999887665543
No 256
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=33.03 E-value=9.1 Score=34.79 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=3.4
Q ss_pred HHHHHhcc
Q 015730 305 LMKIFSAV 312 (401)
Q Consensus 305 L~~lFs~f 312 (401)
|..++.+|
T Consensus 124 L~~l~~~~ 131 (206)
T 3t21_A 124 LNILETGP 131 (206)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 34444444
No 257
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.91 E-value=1.9e+02 Score=23.23 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=52.9
Q ss_pred hhhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHH
Q 015730 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSH 366 (401)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~ 366 (401)
+.|.|-|-|+|..+-..++--.....|---.+.-+ .|-|.|.|.+.++-.-|+..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------------------------dgqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------------------------DGQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------------------------cCeeEEEecCChHHHHHHHH
Confidence 35677788999887766654444444432222221 45689999999999989887
Q ss_pred h----cccccccccceEEEeecccCHHHHHH
Q 015730 367 L----HFMIMLFFFSAFCLMFVTQTNEIRTS 393 (401)
Q Consensus 367 l----n~~~~~~~~~~~~~~~~~~~~e~R~~ 393 (401)
| |+.+.......+|.++.+--+++.|-
T Consensus 66 llnhnnnklqieirgqicdvistipedeekn 96 (129)
T 4eyt_A 66 LLNHNNNKLQIEIRGQICDVISTIPEDEEKN 96 (129)
T ss_dssp HEETTTTEEEEEETTEEEEEECCCCHHHHHH
T ss_pred HHhcCCCEEEEEEcceeeeeeecCCchhhhc
Confidence 6 34444445567888876655555443
No 258
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.86 E-value=88 Score=22.12 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=42.5
Q ss_pred hhheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCHHHHHHHHHHh
Q 015730 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~E~A~kAv~~l 367 (401)
..++.|.++.=..+...|++.+.+ .-|..+.+-.. .+-+.|+|++.++..++++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHHc
Confidence 346788898888889999999999 88888887321 345778888666666777655
Q ss_pred c
Q 015730 368 H 368 (401)
Q Consensus 368 n 368 (401)
.
T Consensus 62 G 62 (73)
T 3fry_A 62 G 62 (73)
T ss_dssp T
T ss_pred C
Confidence 3
No 259
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=32.76 E-value=9.2 Score=37.98 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.3
Q ss_pred HHHhhc
Q 015730 199 QKVLNQ 204 (401)
Q Consensus 199 ~kI~~Q 204 (401)
+.|.+-
T Consensus 78 ~el~~~ 83 (395)
T 3b9f_I 78 MQILEG 83 (395)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 260
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=32.71 E-value=9.3 Score=36.46 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=8.2
Q ss_pred cCHHHHHHHHHH
Q 015730 386 QTNEIRTSFLAD 397 (401)
Q Consensus 386 ~~~e~R~~~~~~ 397 (401)
++.+.|+.||++
T Consensus 245 ~~v~~Rk~fI~~ 256 (268)
T 3k9f_C 245 DKVEPRRKWIED 256 (268)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 456777777765
No 261
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=32.60 E-value=9.3 Score=35.29 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=7.1
Q ss_pred ecCHHHHHHHHHHh
Q 015730 354 YESVELAEKAVSHL 367 (401)
Q Consensus 354 Fes~E~A~kAv~~l 367 (401)
|.+.+++-+++..|
T Consensus 251 ~~~~~dvA~~~~~l 264 (285)
T 2c07_A 251 MGTPEEVANLACFL 264 (285)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44555555555433
No 262
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=32.43 E-value=9.4 Score=33.72 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.5
Q ss_pred CCeeEEEE
Q 015730 313 GSVKTIRT 320 (401)
Q Consensus 313 G~V~~Vri 320 (401)
|+...++|
T Consensus 131 g~w~~l~I 138 (185)
T 4b1m_A 131 NKKYHLKT 138 (185)
T ss_dssp SCCEEEEE
T ss_pred CCeEEEEE
Confidence 44444444
No 263
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=32.34 E-value=9.5 Score=37.04 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHHhhccc
Q 015730 196 ESIQKVLNQVE 206 (401)
Q Consensus 196 e~~~kI~~QvE 206 (401)
..+..+..-+|
T Consensus 82 tsitllanvme 92 (564)
T 4faj_A 82 TSITLLANVME 92 (564)
T ss_dssp HHHHHHHHHCC
T ss_pred hhHHHHHHHHH
Confidence 33344444444
No 264
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=32.27 E-value=9.5 Score=34.78 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=3.1
Q ss_pred hHHHHHHh
Q 015730 195 DESIQKVL 202 (401)
Q Consensus 195 ~e~~~kI~ 202 (401)
.|+.+.|.
T Consensus 84 ~dl~~~i~ 91 (283)
T 2yln_A 84 VEVTRAVA 91 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34443333
No 265
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=38.43 E-value=9.6 Score=31.26 Aligned_cols=30 Identities=30% Similarity=0.198 Sum_probs=22.3
Q ss_pred EecCHHHHHHHHHHhcccccccccceEEEeec
Q 015730 353 EYESVELAEKAVSHLHFMIMLFFFSAFCLMFV 384 (401)
Q Consensus 353 EFes~E~A~kAv~~ln~~~~~~~~~~~~~~~~ 384 (401)
.|.|.++|.+|++.|-..+... ++++..|.
T Consensus 70 ~Y~s~~~A~~A~~~LP~~l~~~--~PWvRs~~ 99 (106)
T 2lfv_A 70 VYASKEEAKKAVSTLPADVQAK--NPWAKPLR 99 (106)
Confidence 8999999999999997766544 34554443
No 266
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=32.09 E-value=9.6 Score=33.77 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=11.0
Q ss_pred HHHHhhccCCCCc-eeccccc
Q 015730 219 HLIRFILKDPEGY-VPISTVA 238 (401)
Q Consensus 219 fL~~~i~~~~eG~-Vpi~~i~ 238 (401)
.|++.+..+.+|. |.+.-++
T Consensus 95 ~lf~~~D~d~dG~~I~f~EF~ 115 (214)
T 2l4h_A 95 RICRVFSTSPAKDSLSFEDFL 115 (214)
T ss_dssp HHHHHHCCSSSCCSEEHHHHH
T ss_pred HHHHHhCcCCCCCEecHHHHH
Confidence 3555555566666 6554433
No 267
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=30.99 E-value=10 Score=33.37 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.9
Q ss_pred ceEEEEec
Q 015730 348 LHAFVEYE 355 (401)
Q Consensus 348 G~AFVEFe 355 (401)
|--||.|.
T Consensus 159 GkyyiVYS 166 (187)
T 3pnr_B 159 GKYYIVYS 166 (187)
T ss_dssp EEEEEEEE
T ss_pred ccEEEEEE
Confidence 33455554
No 268
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.51 E-value=54 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=32.2
Q ss_pred heeccCCCCc---------ccHHHHHHHH--hccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEecCH
Q 015730 290 IVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (401)
Q Consensus 290 tVyV~nLP~d---------~t~edL~~lF--s~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFes~ 357 (401)
+++|.|++.. .+-++|++.| +.|..+. |+.++.. .++.|+|+|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------------------~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------------------LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------------------SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------------------CCCceeEEEEecCC
Confidence 4566677752 3457899977 9999876 4443321 13478999999984
No 269
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=30.43 E-value=11 Score=38.57 Aligned_cols=23 Identities=4% Similarity=0.215 Sum_probs=12.5
Q ss_pred heeccCCCCcccHHHHHHHHhccCC
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGS 314 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~ 314 (401)
+|++++ .....+.++.+|+.+|.
T Consensus 151 ~i~~gg--~~~~~~~v~~ll~~~g~ 173 (480)
T 2zyd_A 151 SIMPGG--QKEAYELVAPILTKIAA 173 (480)
T ss_dssp EEEEES--CHHHHHHHHHHHHHHSC
T ss_pred eEEecC--CHHHHHHHHHHHHHHhc
Confidence 344444 12334566777777664
No 270
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=30.31 E-value=11 Score=38.50 Aligned_cols=6 Identities=33% Similarity=0.124 Sum_probs=2.4
Q ss_pred HHHHHH
Q 015730 360 AEKAVS 365 (401)
Q Consensus 360 A~kAv~ 365 (401)
+-+++.
T Consensus 274 ~~~~L~ 279 (467)
T 2axq_A 274 FVKALV 279 (467)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 271
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.31 E-value=11 Score=35.79 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=5.0
Q ss_pred CcceEEecc
Q 015730 260 SSKLVVSED 268 (401)
Q Consensus 260 S~~LEVsed 268 (401)
.+.|-|+.|
T Consensus 134 ~rVLLID~D 142 (299)
T 3cio_A 134 QKVLFIDAD 142 (299)
T ss_dssp CCEEEEECC
T ss_pred CcEEEEECC
Confidence 345666655
No 272
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=30.09 E-value=11 Score=39.03 Aligned_cols=12 Identities=0% Similarity=-0.219 Sum_probs=5.9
Q ss_pred cccchhhHHhhh
Q 015730 236 TVASFKKIKAII 247 (401)
Q Consensus 236 ~i~sFkKvK~lt 247 (401)
+-+++.=+++|.
T Consensus 117 IafS~~GL~aLG 128 (493)
T 4g2c_A 117 VGLTAHGYATLG 128 (493)
T ss_dssp EEECHHHHHHHT
T ss_pred EEECHHHHHHcC
Confidence 334555555554
No 273
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=29.40 E-value=11 Score=36.40 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=9.7
Q ss_pred HHHHHHHhccCCeeEEEEe
Q 015730 303 QNLMKIFSAVGSVKTIRTC 321 (401)
Q Consensus 303 edL~~lFs~fG~V~~Vri~ 321 (401)
++.++.|..+|-- .|.++
T Consensus 162 ~~~~~~l~~~g~~-ki~vi 179 (374)
T 2xci_A 162 QEDVEKFKTFGAK-RVFSC 179 (374)
T ss_dssp HHHHHHHHTTTCC-SEEEC
T ss_pred HHHHHHHHHcCCC-eEEEc
Confidence 4455666666643 44443
No 274
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=29.31 E-value=11 Score=36.12 Aligned_cols=9 Identities=0% Similarity=0.084 Sum_probs=3.8
Q ss_pred HHHHHhccC
Q 015730 305 LMKIFSAVG 313 (401)
Q Consensus 305 L~~lFs~fG 313 (401)
++++.+.+|
T Consensus 236 v~~~a~~~~ 244 (314)
T 3fwy_A 236 VDRFCKETN 244 (314)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 344444444
No 275
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=29.23 E-value=12 Score=33.63 Aligned_cols=10 Identities=0% Similarity=0.212 Sum_probs=5.8
Q ss_pred HHHHHHHHhc
Q 015730 302 HQNLMKIFSA 311 (401)
Q Consensus 302 ~edL~~lFs~ 311 (401)
..+|+++.++
T Consensus 137 L~EIRDlLk~ 146 (174)
T 2oar_A 137 LTEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4566666654
No 276
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=29.20 E-value=12 Score=32.42 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=9.3
Q ss_pred CCCChHHHHHHhhccc
Q 015730 191 GGLNDESIQKVLNQVE 206 (401)
Q Consensus 191 ~~~~~e~~~kI~~QvE 206 (401)
-.+|+...++|++.++
T Consensus 41 ItiTe~Aa~~lk~ll~ 56 (145)
T 2d2a_A 41 LTLTPAAAIHIRELVA 56 (145)
T ss_dssp CEECHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHh
Confidence 4456666666665443
No 277
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=29.03 E-value=12 Score=37.75 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=5.4
Q ss_pred HHHHHHHhccC
Q 015730 303 QNLMKIFSAVG 313 (401)
Q Consensus 303 edL~~lFs~fG 313 (401)
++|.+.|..+|
T Consensus 264 e~La~~L~~~~ 274 (433)
T 4e4j_A 264 ESVAKNIQANK 274 (433)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHhhcC
Confidence 45555454444
No 278
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=28.95 E-value=12 Score=38.58 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.1
Q ss_pred ceeccccc
Q 015730 231 YVPISTVA 238 (401)
Q Consensus 231 ~Vpi~~i~ 238 (401)
+|++....
T Consensus 138 ~vpl~~~~ 145 (580)
T 3etc_A 138 AVPATHML 145 (580)
T ss_dssp EEECCTTC
T ss_pred EEeCCccC
Confidence 34444333
No 279
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=28.56 E-value=12 Score=37.60 Aligned_cols=12 Identities=8% Similarity=-0.153 Sum_probs=8.5
Q ss_pred CCcccHHHHHHH
Q 015730 297 PEDHCHQNLMKI 308 (401)
Q Consensus 297 P~d~t~edL~~l 308 (401)
|.-+|.++|+..
T Consensus 278 P~Lvt~e~v~~m 289 (394)
T 2qrj_A 278 APFTNMEKLNNP 289 (394)
T ss_dssp CCSCCHHHHCCT
T ss_pred CcccCHHHHhcC
Confidence 556788888664
No 280
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=28.38 E-value=12 Score=36.68 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=10.4
Q ss_pred CCCCCChHHHHHHhhc
Q 015730 189 QHGGLNDESIQKVLNQ 204 (401)
Q Consensus 189 ~~~~~~~e~~~kI~~Q 204 (401)
..+-.+.+++.+|++.
T Consensus 33 P~G~TS~dvv~~vr~~ 48 (327)
T 1k8w_A 33 PQGMSSNDALQKVKRI 48 (327)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4445567777777765
No 281
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=28.35 E-value=12 Score=34.91 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=9.0
Q ss_pred CCCcccHHHHHHHHhc
Q 015730 296 LPEDHCHQNLMKIFSA 311 (401)
Q Consensus 296 LP~d~t~edL~~lFs~ 311 (401)
+|...+-+.|-+++..
T Consensus 137 ~p~~~~ae~L~~~l~~ 152 (286)
T 1jr2_A 137 GETCGNAEKLAEYICS 152 (286)
T ss_dssp CCSCSSHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHh
Confidence 3455566666666654
No 282
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=28.04 E-value=12 Score=31.79 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=7.1
Q ss_pred CCChHHHHHHh
Q 015730 192 GLNDESIQKVL 202 (401)
Q Consensus 192 ~~~~e~~~kI~ 202 (401)
.+++++++.+.
T Consensus 27 ~vs~e~~~af~ 37 (139)
T 2l72_A 27 GVDENCVARFN 37 (139)
T ss_dssp EECHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 45777776654
No 283
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=27.79 E-value=12 Score=36.93 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=5.9
Q ss_pred cHHHHHHHHhc
Q 015730 301 CHQNLMKIFSA 311 (401)
Q Consensus 301 t~edL~~lFs~ 311 (401)
+..++++++..
T Consensus 263 ~~~~~~~~i~~ 273 (393)
T 1wuf_A 263 SVKDVEQAHSI 273 (393)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 45566665543
No 284
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=27.75 E-value=17 Score=33.81 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=10.4
Q ss_pred EEecCHHHHHHHHHHh
Q 015730 352 VEYESVELAEKAVSHL 367 (401)
Q Consensus 352 VEFes~E~A~kAv~~l 367 (401)
+.|++.++.+.-++.+
T Consensus 175 ~~f~~~~~~~~~l~~i 190 (235)
T 1qwz_A 175 TDFENDQDYQQFLDET 190 (235)
T ss_dssp SSCSSHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 3567777776666655
No 285
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=27.19 E-value=13 Score=36.45 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 015730 388 NEIRTSFLADCR 399 (401)
Q Consensus 388 ~e~R~~~~~~~~ 399 (401)
.++|..-|+.-|
T Consensus 300 ~~~kq~qI~~LR 311 (332)
T 2es4_D 300 PQDRDARIAQLR 311 (332)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 286
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=26.56 E-value=19 Score=33.80 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=11.1
Q ss_pred CCCCCChHHHHHHhhccccc
Q 015730 189 QHGGLNDESIQKVLNQVEYY 208 (401)
Q Consensus 189 ~~~~~~~e~~~kI~~QvEfY 208 (401)
....+|.|..+.|-+.|+++
T Consensus 38 ~~~~lt~e~~~li~~lv~a~ 57 (283)
T 3ipq_A 38 ILPQLSPEQLGMIEKLVAAQ 57 (283)
T ss_dssp ---CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 45567887776666555543
No 287
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=26.02 E-value=14 Score=33.31 Aligned_cols=6 Identities=33% Similarity=0.113 Sum_probs=2.5
Q ss_pred ceEEec
Q 015730 262 KLVVSE 267 (401)
Q Consensus 262 ~LEVse 267 (401)
.|-|+.
T Consensus 93 vv~Is~ 98 (221)
T 2c0d_A 93 LLGISV 98 (221)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 344443
No 288
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=25.99 E-value=14 Score=33.28 Aligned_cols=7 Identities=0% Similarity=0.135 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 015730 303 QNLMKIF 309 (401)
Q Consensus 303 edL~~lF 309 (401)
+.|.+.|
T Consensus 125 ~~l~~~~ 131 (236)
T 2px7_A 125 ARVLEAA 131 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 289
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=25.67 E-value=15 Score=36.52 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=8.0
Q ss_pred CCCChHHHHHHhhcc
Q 015730 191 GGLNDESIQKVLNQV 205 (401)
Q Consensus 191 ~~~~~e~~~kI~~Qv 205 (401)
+-.+.+++.+|++.+
T Consensus 76 G~TS~~vv~~vr~~l 90 (357)
T 2apo_A 76 GPTSHEVSTWVKKIL 90 (357)
T ss_dssp SSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 334456666666543
No 290
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=25.64 E-value=15 Score=36.05 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=4.6
Q ss_pred CHHHHHHHHH
Q 015730 356 SVELAEKAVS 365 (401)
Q Consensus 356 s~E~A~kAv~ 365 (401)
+.+++++.++
T Consensus 273 t~~e~~~~~~ 282 (332)
T 4axs_A 273 DVKALNNFIN 282 (332)
T ss_dssp BHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4445544443
No 291
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=25.32 E-value=15 Score=32.44 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=4.3
Q ss_pred cCCeeEEEE
Q 015730 312 VGSVKTIRT 320 (401)
Q Consensus 312 fG~V~~Vri 320 (401)
-|....+++
T Consensus 120 ~G~~~~v~f 128 (188)
T 2r5o_A 120 RGDVRVFKF 128 (188)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 465544444
No 292
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=25.27 E-value=15 Score=36.48 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=12.3
Q ss_pred CCCCcccHHHHHHH----HhccCCeeEEEEe
Q 015730 295 NLPEDHCHQNLMKI----FSAVGSVKTIRTC 321 (401)
Q Consensus 295 nLP~d~t~edL~~l----Fs~fG~V~~Vri~ 321 (401)
|.+.+.+.|-++.. +++||--..+++.
T Consensus 145 n~~~~psvDy~~~v~lP~l~~fG~~~~l~i~ 175 (358)
T 3tut_A 145 DNPSAPPADFIRRVLEPLLAKIGIHQQTTLL 175 (358)
T ss_dssp CCTTSCCHHHHHHTHHHHHHHHTCCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 44445555544433 2455543344443
No 293
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=25.10 E-value=15 Score=29.21 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.9
Q ss_pred CCCCCChHHHHHHh
Q 015730 189 QHGGLNDESIQKVL 202 (401)
Q Consensus 189 ~~~~~~~e~~~kI~ 202 (401)
..+.++.-.+..|+
T Consensus 27 gDG~Vn~~D~~llk 40 (88)
T 4fl4_A 27 DDGKVNSTDLTLLK 40 (88)
T ss_dssp CSSCCSHHHHHHHH
T ss_pred CCCcCCHHHHHHHH
Confidence 44455554554444
No 294
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=24.96 E-value=15 Score=38.62 Aligned_cols=20 Identities=0% Similarity=-0.049 Sum_probs=11.1
Q ss_pred ceEEEEecCHHHHHHHHHHh
Q 015730 348 LHAFVEYESVELAEKAVSHL 367 (401)
Q Consensus 348 G~AFVEFes~E~A~kAv~~l 367 (401)
+..++.|-+.|++..+++.+
T Consensus 302 ~~~l~~~v~~e~v~~~~~ai 321 (591)
T 3b0g_A 302 AIPLDAWVPADDVVPVCRAI 321 (591)
T ss_dssp CEEEEEEEEGGGHHHHHHHH
T ss_pred ceeeccccCHHHHHHHHHHH
Confidence 44555666666666555443
No 295
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.88 E-value=15 Score=33.76 Aligned_cols=6 Identities=33% Similarity=0.683 Sum_probs=2.4
Q ss_pred HHHHHH
Q 015730 391 RTSFLA 396 (401)
Q Consensus 391 R~~~~~ 396 (401)
|++|++
T Consensus 212 ~~~~~~ 217 (223)
T 3dfz_A 212 QREFLQ 217 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 296
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=24.65 E-value=19 Score=35.43 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=2.3
Q ss_pred CCCCCCccc
Q 015730 156 HNNNNSHHQ 164 (401)
Q Consensus 156 ~~~~~~~~~ 164 (401)
.++....|+
T Consensus 13 ~~~~~~~mk 21 (386)
T 1wue_A 13 LVPRGSHMN 21 (386)
T ss_dssp ----CCCCC
T ss_pred cCCCCCcCE
Confidence 444444443
No 297
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.44 E-value=1.8e+02 Score=20.14 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred hheeccCCCCcccHHHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec----CHHHHHHHH
Q 015730 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKAV 364 (401)
Q Consensus 289 rtVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe----s~E~A~kAv 364 (401)
.++.|.|+.=..+...|++.+.+..-|..+.+-.. .+-+.|+|+ +.++..+++
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 45778888777888999999999877888877431 345788885 456666676
Q ss_pred HHhc
Q 015730 365 SHLH 368 (401)
Q Consensus 365 ~~ln 368 (401)
+.+.
T Consensus 61 ~~~G 64 (74)
T 3dxs_X 61 EDAG 64 (74)
T ss_dssp HHHT
T ss_pred HHCC
Confidence 6553
No 298
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=24.33 E-value=18 Score=35.53 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCcccccccccc
Q 015730 130 YHHQQHQQHQHH 141 (401)
Q Consensus 130 ~~~~~h~~~~~~ 141 (401)
||| |||||||
T Consensus 331 ~~~--~~~~~~~ 340 (340)
T 2oxn_A 331 HHH--HHHHHHH 340 (340)
T ss_dssp TTC---------
T ss_pred hcc--cccccCC
No 299
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=24.14 E-value=16 Score=34.56 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=5.1
Q ss_pred HHHhhccccccc
Q 015730 199 QKVLNQVEYYFS 210 (401)
Q Consensus 199 ~kI~~QvEfYFS 210 (401)
.....|.+.+|+
T Consensus 70 ~qf~tQ~n~ayC 81 (254)
T 2bu3_A 70 MQFVTQVNQAYC 81 (254)
T ss_dssp HHCCCCSSTTCH
T ss_pred ccccccCCCCch
Confidence 333444444443
No 300
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=23.75 E-value=14 Score=29.08 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=18.4
Q ss_pred cCCCCcccHHHHHHHHhccCC
Q 015730 294 ENLPEDHCHQNLMKIFSAVGS 314 (401)
Q Consensus 294 ~nLP~d~t~edL~~lFs~fG~ 314 (401)
+++....+.++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 677788899999999999984
No 301
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=23.69 E-value=17 Score=36.59 Aligned_cols=9 Identities=0% Similarity=-0.082 Sum_probs=4.5
Q ss_pred cceEEEEec
Q 015730 347 KLHAFVEYE 355 (401)
Q Consensus 347 KG~AFVEFe 355 (401)
++.++|-..
T Consensus 247 ~~~l~iG~s 255 (433)
T 4e4j_A 247 SKTLVIGNS 255 (433)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEEec
Confidence 455555543
No 302
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=23.42 E-value=52 Score=31.41 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=13.4
Q ss_pred cccccCCCcCcCHHHHHhhccCCC
Q 015730 206 EYYFSDLNLATTDHLIRFILKDPE 229 (401)
Q Consensus 206 EfYFSd~NL~~D~fL~~~i~~~~e 229 (401)
...+|| +|-|||+.|....|
T Consensus 42 ~slYs~----keiFlRELISNasD 61 (272)
T 3ied_A 42 NSLYTD----KDVFLRELISNASD 61 (272)
T ss_dssp HCTTCC----TTHHHHHHHHHHHH
T ss_pred hhcCCC----HHHHHHHHHHhhHH
Confidence 345555 57899998875444
No 303
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=23.16 E-value=17 Score=37.52 Aligned_cols=8 Identities=38% Similarity=0.339 Sum_probs=0.0
Q ss_pred CCcccCcc
Q 015730 160 NSHHQNNQ 167 (401)
Q Consensus 160 ~~~~~~~~ 167 (401)
-+||++-+
T Consensus 18 ~~~~~~~~ 25 (493)
T 4g2c_A 18 GSHMENLY 25 (493)
T ss_dssp --------
T ss_pred cchhhhhh
Confidence 35666444
No 304
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=23.10 E-value=17 Score=31.47 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=4.9
Q ss_pred cceEEEEecC
Q 015730 347 KLHAFVEYES 356 (401)
Q Consensus 347 KG~AFVEFes 356 (401)
+..++|.+.+
T Consensus 143 ~l~GvIalaD 152 (156)
T 1svj_A 143 RVLGVIALKD 152 (156)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEec
Confidence 3345565543
No 305
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=23.04 E-value=24 Score=32.76 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=3.4
Q ss_pred CCceecc
Q 015730 229 EGYVPIS 235 (401)
Q Consensus 229 eG~Vpi~ 235 (401)
=|||.|.
T Consensus 63 iGwI~IP 69 (235)
T 1qwz_A 63 VGWIKLS 69 (235)
T ss_dssp EEEEECT
T ss_pred EEEEEEC
Confidence 3565443
No 306
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.97 E-value=15 Score=31.72 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=18.3
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCCCCCCcccccCccccCcceEEEEec
Q 015730 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (401)
Q Consensus 303 edL~~lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (401)
+|+..+|...|.|++... .|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------------------------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------------------------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------------------------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------------------------CCCeeEEeeC
Confidence 456677888888876653 2899999876
No 307
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=22.56 E-value=18 Score=38.65 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=7.1
Q ss_pred ChHHHHHHhhccccc
Q 015730 194 NDESIQKVLNQVEYY 208 (401)
Q Consensus 194 ~~e~~~kI~~QvEfY 208 (401)
|+++...|++-+.||
T Consensus 46 t~~l~s~~~ey~df~ 60 (800)
T 3oc3_A 46 TDELVSQIKEYVDFT 60 (800)
T ss_dssp SSSHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcch
Confidence 444444454444443
No 308
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.07 E-value=1.2e+02 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=20.9
Q ss_pred cceEEEEecCHHHHHHHHHHhcccc
Q 015730 347 KLHAFVEYESVELAEKAVSHLHFMI 371 (401)
Q Consensus 347 KG~AFVEFes~E~A~kAv~~ln~~~ 371 (401)
.||.||+++..++...+++...+..
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCEEEEEEecchhHHHHHHCCCCce
Confidence 8999999999998888888775543
No 309
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=21.97 E-value=19 Score=29.85 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=0.0
Q ss_pred CCCCceec
Q 015730 227 DPEGYVPI 234 (401)
Q Consensus 227 ~~eG~Vpi 234 (401)
+.+|+|.+
T Consensus 39 d~dG~I~~ 46 (143)
T 3a4u_B 39 DKNTVHDQ 46 (143)
T ss_dssp --------
T ss_pred CCCCcCcH
Confidence 33444433
No 310
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=21.75 E-value=19 Score=39.24 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCcccccccccc
Q 015730 130 YHHQQHQQHQHH 141 (401)
Q Consensus 130 ~~~~~h~~~~~~ 141 (401)
||| |||||||
T Consensus 794 ~~~--~~~~~~~ 803 (803)
T 3qx3_A 794 HHH--HHHHHHH 803 (803)
T ss_dssp ------------
T ss_pred hcc--cccccCC
No 311
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=21.57 E-value=20 Score=36.60 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 015730 303 QNLMKIF 309 (401)
Q Consensus 303 edL~~lF 309 (401)
+++.++|
T Consensus 225 ~~~~~l~ 231 (480)
T 2zyd_A 225 EELAQTF 231 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 312
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Probab=21.48 E-value=20 Score=32.76 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCcccccccccc
Q 015730 130 YHHQQHQQHQHH 141 (401)
Q Consensus 130 ~~~~~h~~~~~~ 141 (401)
||| |||||||
T Consensus 190 ~~~--~~~~~~~ 199 (199)
T 3u61_A 190 HHH--HHHHHHH 199 (199)
T ss_dssp ------------
T ss_pred hhc--cccccCC
No 313
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=21.11 E-value=20 Score=31.52 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.9
Q ss_pred CCCCce
Q 015730 227 DPEGYV 232 (401)
Q Consensus 227 ~~eG~V 232 (401)
.+.|||
T Consensus 63 ~GnGyl 68 (187)
T 3pnr_B 63 AGTGYL 68 (187)
T ss_dssp TTSSCE
T ss_pred CCceEE
Confidence 345543
No 314
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.75 E-value=21 Score=30.81 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=15.6
Q ss_pred cceEEEEecC------HHHHHHHHHHhcccc
Q 015730 347 KLHAFVEYES------VELAEKAVSHLHFMI 371 (401)
Q Consensus 347 KG~AFVEFes------~E~A~kAv~~ln~~~ 371 (401)
+...+++|.+ .+.+.++|+.+++..
T Consensus 101 ~~~~~~~fGd~~~~fD~~~yn~lv~l~~~f~ 131 (142)
T 2pi2_E 101 LCTSYVQFKEDSHPFDLGLYNEAVKIIHDFP 131 (142)
T ss_dssp EEEEEEECCCSSSCCCHHHHHHHHHHHHHCG
T ss_pred EEEEEEecCCCccccCHHHHHHHHHHHHhCc
Confidence 3456778874 366777777666333
No 315
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=20.59 E-value=48 Score=31.74 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=6.4
Q ss_pred CHHHHHhhcc
Q 015730 217 TDHLIRFILK 226 (401)
Q Consensus 217 D~fL~~~i~~ 226 (401)
|.+|++.+..
T Consensus 61 D~~LLRFLRA 70 (320)
T 3q8g_A 61 DSTLLRFLRA 70 (320)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677777654
No 316
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=20.52 E-value=21 Score=33.99 Aligned_cols=8 Identities=0% Similarity=0.106 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q 015730 251 SHLASVLR 258 (401)
Q Consensus 251 e~I~eALk 258 (401)
..|+.||-
T Consensus 98 ~~ii~alG 105 (268)
T 3k9f_C 98 NTMIYTIG 105 (268)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 45555553
No 317
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=20.42 E-value=21 Score=37.34 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.9
Q ss_pred cCcCHHHHH
Q 015730 214 LATTDHLIR 222 (401)
Q Consensus 214 L~~D~fL~~ 222 (401)
|..|++|+.
T Consensus 63 lGcdE~MwD 71 (560)
T 3odm_A 63 LGIEEVMID 71 (560)
T ss_dssp CCCCEEEEE
T ss_pred CCCceeeec
Confidence 344444443
No 318
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=20.39 E-value=40 Score=27.30 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=6.2
Q ss_pred CCCCCChHHH
Q 015730 189 QHGGLNDESI 198 (401)
Q Consensus 189 ~~~~~~~e~~ 198 (401)
+.++|++.+.
T Consensus 25 s~~dLP~sVr 34 (96)
T 1sg7_A 25 TKSDLPESVK 34 (96)
T ss_dssp SSTTSCHHHH
T ss_pred ChhhCCHHHH
Confidence 5666666655
No 319
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=20.37 E-value=21 Score=35.41 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.9
Q ss_pred heeccCCCCcccHHHHHHHHhccCCeeEEEEecCC
Q 015730 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~fG~V~~Vri~~p~ 324 (401)
..||+.+-.+ ....+...+..|| ..|+++.|.
T Consensus 183 va~vGD~~nn-va~Sl~~~~~~lG--~~v~~~~P~ 214 (365)
T 4amu_A 183 IVFIGDYKNN-VGVSTMIGAAFNG--MHVVMCGPD 214 (365)
T ss_dssp EEEESSTTSH-HHHHHHHHHHHTT--CEEEEESCG
T ss_pred EEEECCCCcc-hHHHHHHHHHHcC--CEEEEECCc
Confidence 4566665333 2345555667777 256666553
No 320
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=20.34 E-value=22 Score=32.63 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=12.4
Q ss_pred heeccCCCCcccHHHHHHHHhc
Q 015730 290 IVVAENLPEDHCHQNLMKIFSA 311 (401)
Q Consensus 290 tVyV~nLP~d~t~edL~~lFs~ 311 (401)
.|-|.==|..++.++|.++|=.
T Consensus 74 aV~V~yDp~~iSy~~LL~~Ff~ 95 (203)
T 1nwa_A 74 AVEIIFDPTVTDYRTLLEFFFQ 95 (203)
T ss_dssp EEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 3444434555677777666643
No 321
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=20.02 E-value=22 Score=35.67 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=4.7
Q ss_pred HHHHhhhcCc
Q 015730 252 HLASVLRKSS 261 (401)
Q Consensus 252 ~I~eALk~S~ 261 (401)
.+.++|.++.
T Consensus 127 ~l~~~l~~~~ 136 (394)
T 2qrj_A 127 NVLMRFIKGH 136 (394)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
Confidence 4445554443
Done!