Query 015732
Match_columns 401
No_of_seqs 378 out of 2384
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 1E-100 2E-105 772.8 37.7 386 2-401 32-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 6.2E-95 1.3E-99 706.8 34.7 334 2-345 8-351 (371)
3 KOG0712 Molecular chaperone (D 100.0 1.4E-87 3E-92 646.7 25.7 329 2-342 8-337 (337)
4 PRK14296 chaperone protein Dna 100.0 3.3E-86 7.1E-91 661.3 35.5 333 2-344 8-361 (372)
5 PRK14288 chaperone protein Dna 100.0 8.4E-85 1.8E-89 651.0 34.1 331 2-344 7-345 (369)
6 PRK14298 chaperone protein Dna 100.0 8.8E-83 1.9E-87 637.6 34.8 333 2-344 9-351 (377)
7 PRK14286 chaperone protein Dna 100.0 8.2E-83 1.8E-87 637.3 33.8 333 2-344 8-357 (372)
8 PRK14278 chaperone protein Dna 100.0 1.7E-82 3.8E-87 636.1 36.0 336 2-344 7-350 (378)
9 PRK14287 chaperone protein Dna 100.0 1.7E-82 3.6E-87 634.9 34.8 334 2-344 8-348 (371)
10 PRK14276 chaperone protein Dna 100.0 1.9E-82 4.2E-87 636.6 34.6 333 2-343 8-355 (380)
11 PRK14280 chaperone protein Dna 100.0 2.4E-82 5.3E-87 635.0 35.1 333 2-343 8-352 (376)
12 PRK14277 chaperone protein Dna 100.0 9.6E-82 2.1E-86 632.8 34.3 334 2-343 9-364 (386)
13 PRK14297 chaperone protein Dna 100.0 1.8E-81 3.8E-86 630.0 34.8 335 2-344 8-358 (380)
14 PRK14282 chaperone protein Dna 100.0 4.1E-81 8.8E-86 625.2 35.8 336 2-344 8-363 (369)
15 PRK14285 chaperone protein Dna 100.0 4.5E-81 9.8E-86 623.2 33.5 333 2-346 7-355 (365)
16 PRK14284 chaperone protein Dna 100.0 2.1E-80 4.5E-85 624.1 34.9 332 2-343 5-365 (391)
17 PRK14279 chaperone protein Dna 100.0 1.6E-80 3.5E-85 624.3 33.8 328 2-343 13-377 (392)
18 PRK14281 chaperone protein Dna 100.0 2.2E-80 4.7E-85 624.7 33.9 336 2-344 7-372 (397)
19 TIGR02349 DnaJ_bact chaperone 100.0 8.7E-80 1.9E-84 613.5 34.5 334 2-343 4-352 (354)
20 PRK14301 chaperone protein Dna 100.0 1.2E-79 2.7E-84 614.6 32.7 331 2-344 8-350 (373)
21 PRK14294 chaperone protein Dna 100.0 1.8E-79 3.9E-84 612.7 33.0 332 2-344 8-350 (366)
22 PRK14295 chaperone protein Dna 100.0 7.1E-79 1.5E-83 611.8 35.0 327 2-344 13-372 (389)
23 PRK14290 chaperone protein Dna 100.0 1.7E-78 3.6E-83 605.5 34.4 337 2-346 7-358 (365)
24 PRK10767 chaperone protein Dna 100.0 3E-78 6.5E-83 605.5 34.1 329 2-344 8-348 (371)
25 PRK14300 chaperone protein Dna 100.0 8.8E-78 1.9E-82 601.4 33.8 331 2-343 7-351 (372)
26 PRK14283 chaperone protein Dna 100.0 1.6E-77 3.4E-82 601.0 34.1 329 2-343 9-355 (378)
27 PRK14291 chaperone protein Dna 100.0 1.8E-77 3.9E-82 601.0 33.8 333 2-345 7-371 (382)
28 PRK14292 chaperone protein Dna 100.0 3E-77 6.6E-82 598.2 34.3 334 2-343 6-347 (371)
29 PRK14293 chaperone protein Dna 100.0 3.8E-77 8.1E-82 597.5 33.1 337 2-344 7-354 (374)
30 PRK14289 chaperone protein Dna 100.0 2.9E-76 6.2E-81 593.8 34.1 336 2-344 9-364 (386)
31 PRK14299 chaperone protein Dna 100.0 4.1E-60 8.9E-65 459.5 25.5 257 2-343 8-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 3.1E-58 6.8E-63 449.5 27.3 274 2-344 8-293 (306)
33 KOG0713 Molecular chaperone (D 100.0 4E-48 8.6E-53 368.7 9.1 300 2-332 20-328 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 1E-41 2.3E-46 352.2 23.0 158 105-329 659-817 (871)
35 KOG0715 Molecular chaperone (D 100.0 2.7E-40 5.8E-45 318.7 11.6 238 2-266 47-288 (288)
36 KOG0714 Molecular chaperone (D 99.9 4.2E-25 9.2E-30 213.1 13.1 244 2-308 7-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 7.3E-22 1.6E-26 155.9 7.5 81 255-337 1-81 (81)
38 PHA03102 Small T antigen; Revi 99.8 3.9E-20 8.4E-25 161.5 5.0 81 1-87 8-90 (153)
39 KOG0716 Molecular chaperone (D 99.8 5.3E-20 1.2E-24 171.0 4.8 64 2-65 35-102 (279)
40 PTZ00341 Ring-infected erythro 99.8 2.1E-19 4.6E-24 191.0 5.1 65 2-66 577-644 (1136)
41 KOG0718 Molecular chaperone (D 99.8 5E-19 1.1E-23 174.4 4.8 67 2-68 13-87 (546)
42 KOG0691 Molecular chaperone (D 99.7 1.4E-18 3.1E-23 166.7 2.7 81 2-87 9-93 (296)
43 KOG0717 Molecular chaperone (D 99.7 4.7E-18 1E-22 167.6 4.0 65 2-66 12-81 (508)
44 COG2214 CbpA DnaJ-class molecu 99.7 1.2E-16 2.7E-21 147.2 12.0 59 2-60 10-73 (237)
45 KOG0719 Molecular chaperone (D 99.7 2.8E-17 6E-22 149.5 4.1 61 2-62 18-84 (264)
46 KOG0624 dsRNA-activated protei 99.7 9.6E-17 2.1E-21 153.9 7.1 63 2-65 398-467 (504)
47 PF00226 DnaJ: DnaJ domain; I 99.7 4.1E-17 8.8E-22 122.7 3.6 56 2-57 4-64 (64)
48 COG0484 DnaJ DnaJ-class molecu 99.6 1.6E-14 3.4E-19 142.3 11.8 146 101-259 131-346 (371)
49 KOG0721 Molecular chaperone (D 99.6 1.9E-15 4.1E-20 136.4 4.9 63 1-63 102-168 (230)
50 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 8.8E-15 1.9E-19 110.8 7.5 65 132-198 1-66 (66)
51 smart00271 DnaJ DnaJ molecular 99.6 4.4E-15 9.5E-20 110.0 5.6 52 1-52 4-60 (60)
52 cd06257 DnaJ DnaJ domain or J- 99.5 2.1E-14 4.6E-19 104.3 5.3 49 1-49 3-55 (55)
53 KOG0550 Molecular chaperone (D 99.5 1.2E-14 2.6E-19 142.5 4.4 80 2-84 377-461 (486)
54 PTZ00100 DnaJ chaperone protei 99.4 1.4E-13 3.1E-18 114.3 6.0 47 2-48 69-115 (116)
55 KOG0722 Molecular chaperone (D 99.4 8.9E-14 1.9E-18 128.0 2.3 58 2-59 37-97 (329)
56 PHA02624 large T antigen; Prov 99.4 3.3E-13 7.2E-18 139.9 5.4 56 1-56 14-71 (647)
57 PRK01356 hscB co-chaperone Hsc 99.4 4.6E-13 1E-17 119.5 5.0 58 1-58 5-71 (166)
58 PRK05014 hscB co-chaperone Hsc 99.4 5.8E-13 1.3E-17 119.5 5.4 58 1-58 4-72 (171)
59 PRK14282 chaperone protein Dna 99.3 3.7E-12 8E-17 128.0 9.5 56 205-260 304-360 (369)
60 PRK14295 chaperone protein Dna 99.3 6.6E-12 1.4E-16 126.9 10.2 54 205-258 314-367 (389)
61 PRK14294 chaperone protein Dna 99.3 4.7E-12 1E-16 127.1 7.3 57 205-261 291-348 (366)
62 PRK00294 hscB co-chaperone Hsc 99.3 4E-12 8.7E-17 114.0 5.6 58 1-58 7-75 (173)
63 PRK03578 hscB co-chaperone Hsc 99.3 4.1E-12 8.9E-17 114.4 5.3 58 1-58 9-77 (176)
64 PRK14290 chaperone protein Dna 99.3 7.4E-12 1.6E-16 125.7 7.7 57 204-260 296-353 (365)
65 PRK14298 chaperone protein Dna 99.2 9E-12 1.9E-16 125.4 7.1 56 205-260 292-348 (377)
66 PRK14285 chaperone protein Dna 99.2 1.4E-11 3E-16 123.6 7.6 55 205-259 294-349 (365)
67 PRK10767 chaperone protein Dna 99.2 2.1E-11 4.5E-16 122.7 7.0 56 205-260 289-345 (371)
68 PRK14279 chaperone protein Dna 99.2 2.6E-11 5.6E-16 122.7 7.2 53 205-257 320-372 (392)
69 PRK14301 chaperone protein Dna 99.2 2.7E-11 5.8E-16 121.9 7.3 56 205-260 291-347 (373)
70 PRK14284 chaperone protein Dna 99.2 3.9E-11 8.4E-16 121.5 7.8 57 204-260 306-363 (391)
71 PRK14277 chaperone protein Dna 99.2 6.1E-11 1.3E-15 119.9 8.5 53 205-257 306-359 (386)
72 KOG0720 Molecular chaperone (D 99.2 1.5E-11 3.3E-16 122.0 3.9 58 2-59 239-299 (490)
73 PRK14300 chaperone protein Dna 99.2 6.1E-11 1.3E-15 119.3 7.8 54 204-257 292-346 (372)
74 PRK14289 chaperone protein Dna 99.2 3.8E-11 8.2E-16 121.4 6.3 116 146-337 155-280 (386)
75 TIGR02349 DnaJ_bact chaperone 99.1 7.6E-11 1.7E-15 118.0 7.0 54 205-258 294-348 (354)
76 PRK14287 chaperone protein Dna 99.1 6.9E-11 1.5E-15 118.8 6.7 56 205-260 289-345 (371)
77 COG5407 SEC63 Preprotein trans 99.1 2.3E-11 5.1E-16 120.1 3.1 63 1-63 101-172 (610)
78 PRK14293 chaperone protein Dna 99.1 1.4E-10 3E-15 116.9 7.5 56 205-260 294-351 (374)
79 PRK14278 chaperone protein Dna 99.1 1.9E-10 4.1E-15 115.9 8.4 55 203-257 289-344 (378)
80 PRK14288 chaperone protein Dna 99.1 1.9E-10 4.1E-15 115.6 7.5 53 205-257 286-339 (369)
81 PRK14280 chaperone protein Dna 99.1 2.3E-10 5E-15 115.3 7.9 53 205-257 294-347 (376)
82 PRK14276 chaperone protein Dna 99.1 2.4E-10 5.2E-15 115.3 6.9 54 205-258 297-351 (380)
83 PRK14286 chaperone protein Dna 99.0 3E-10 6.4E-15 114.3 6.8 53 205-257 298-351 (372)
84 PRK14281 chaperone protein Dna 99.0 5.1E-10 1.1E-14 113.5 8.2 53 205-257 313-366 (397)
85 TIGR00714 hscB Fe-S protein as 99.0 3.2E-10 6.9E-15 100.5 5.3 50 10-59 3-61 (157)
86 PRK14297 chaperone protein Dna 99.0 5.6E-10 1.2E-14 112.7 7.6 53 205-257 299-352 (380)
87 PRK14296 chaperone protein Dna 99.0 5.6E-10 1.2E-14 112.3 7.6 53 205-257 301-355 (372)
88 PRK14292 chaperone protein Dna 99.0 1.1E-09 2.4E-14 110.3 7.6 54 205-258 289-343 (371)
89 PRK14291 chaperone protein Dna 98.9 2E-09 4.3E-14 108.7 8.2 44 204-247 302-346 (382)
90 PTZ00037 DnaJ_C chaperone prot 98.9 1.9E-09 4.1E-14 109.8 7.2 49 205-253 302-356 (421)
91 PLN03165 chaperone protein dna 98.9 2.8E-09 6.1E-14 88.2 6.6 61 129-203 41-101 (111)
92 PRK14283 chaperone protein Dna 98.9 3.6E-09 7.9E-14 106.8 8.6 53 205-257 297-350 (378)
93 PRK14299 chaperone protein Dna 98.9 8.1E-09 1.8E-13 100.6 8.8 73 249-331 125-197 (291)
94 PRK10266 curved DNA-binding pr 98.7 6.2E-08 1.3E-12 95.1 8.6 75 251-329 115-202 (306)
95 PRK01773 hscB co-chaperone Hsc 98.7 2.5E-08 5.4E-13 89.6 5.1 57 1-57 5-72 (173)
96 KOG1789 Endocytosis protein RM 98.5 1.2E-07 2.6E-12 101.9 5.2 47 2-48 1285-1336(2235)
97 COG5269 ZUO1 Ribosome-associat 98.5 1.4E-07 3E-12 88.2 4.4 59 3-61 48-115 (379)
98 PF01556 CTDII: DnaJ C termina 98.5 1.2E-07 2.6E-12 74.7 3.4 48 204-251 27-76 (81)
99 TIGR02642 phage_xxxx uncharact 98.4 3.1E-07 6.7E-12 83.0 5.6 51 172-223 99-149 (186)
100 KOG1150 Predicted molecular ch 98.4 2.1E-07 4.5E-12 83.5 3.2 54 1-54 56-114 (250)
101 PRK09430 djlA Dna-J like membr 98.3 4.2E-07 9E-12 87.5 4.7 31 2-32 204-234 (267)
102 KOG0723 Molecular chaperone (D 98.2 1.7E-06 3.7E-11 70.0 5.4 50 2-51 60-109 (112)
103 KOG0568 Molecular chaperone (D 98.0 4.6E-06 9.9E-11 76.5 4.3 48 2-49 51-102 (342)
104 KOG0712 Molecular chaperone (D 97.9 3E-05 6.4E-10 76.1 6.9 54 194-247 267-324 (337)
105 COG1107 Archaea-specific RecJ- 97.8 8.2E-06 1.8E-10 83.8 2.1 27 131-157 4-30 (715)
106 TIGR03835 termin_org_DnaJ term 97.5 0.00051 1.1E-08 73.5 9.3 64 2-65 6-72 (871)
107 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.4 8.4E-05 1.8E-09 56.1 2.1 42 129-182 15-66 (66)
108 COG1107 Archaea-specific RecJ- 97.4 0.0013 2.8E-08 68.2 10.6 69 118-199 8-106 (715)
109 KOG2813 Predicted molecular ch 97.1 0.00048 1E-08 66.2 4.5 32 173-209 246-277 (406)
110 PLN03165 chaperone protein dna 96.5 0.0021 4.6E-08 53.4 2.8 40 131-186 54-100 (111)
111 KOG2813 Predicted molecular ch 96.2 0.0022 4.8E-08 61.8 2.0 25 172-201 234-258 (406)
112 TIGR02642 phage_xxxx uncharact 95.4 0.0083 1.8E-07 54.5 1.9 29 129-157 99-127 (186)
113 PF03656 Pam16: Pam16; InterP 95.1 0.026 5.7E-07 48.1 4.1 50 2-51 62-111 (127)
114 COG1076 DjlA DnaJ-domain-conta 94.5 0.023 5.1E-07 51.2 2.2 46 13-58 18-72 (174)
115 KOG3192 Mitochondrial J-type c 93.3 0.092 2E-06 45.9 3.5 47 11-57 23-78 (168)
116 KOG0724 Zuotin and related mol 91.6 0.16 3.6E-06 50.4 3.6 52 9-60 3-62 (335)
117 COG1076 DjlA DnaJ-domain-conta 90.6 0.092 2E-06 47.3 0.6 47 2-48 117-164 (174)
118 PF11833 DUF3353: Protein of u 90.4 0.55 1.2E-05 43.1 5.5 38 7-48 1-38 (194)
119 KOG0715 Molecular chaperone (D 90.1 0.34 7.3E-06 47.3 4.0 38 283-331 235-272 (288)
120 cd03031 GRX_GRX_like Glutaredo 88.7 0.36 7.8E-06 42.3 2.8 22 131-157 101-122 (147)
121 KOG0431 Auxilin-like protein a 88.4 0.27 5.8E-06 51.0 2.0 24 10-33 400-423 (453)
122 KOG2824 Glutaredoxin-related p 88.3 0.45 9.7E-06 45.5 3.3 51 130-195 230-280 (281)
123 KOG2824 Glutaredoxin-related p 78.9 1.8 3.8E-05 41.6 3.0 40 146-201 230-275 (281)
124 PRK14714 DNA polymerase II lar 78.1 2 4.3E-05 49.2 3.5 66 118-204 657-725 (1337)
125 TIGR00630 uvra excinuclease AB 78.0 1.4 3.1E-05 49.6 2.5 20 324-343 855-875 (924)
126 smart00709 Zpr1 Duplicated dom 77.2 9.8 0.00021 33.8 7.1 20 205-224 81-100 (160)
127 PF13446 RPT: A repeated domai 75.9 4.1 8.8E-05 29.9 3.6 41 2-49 9-49 (62)
128 PRK00349 uvrA excinuclease ABC 73.1 3 6.6E-05 47.2 3.4 20 324-343 857-877 (943)
129 COG0178 UvrA Excinuclease ATPa 73.1 4 8.6E-05 45.0 4.1 25 316-343 844-869 (935)
130 TIGR00310 ZPR1_znf ZPR1 zinc f 72.2 16 0.00034 33.6 7.2 35 147-181 2-39 (192)
131 cd03031 GRX_GRX_like Glutaredo 69.5 5.5 0.00012 34.9 3.5 39 146-200 100-145 (147)
132 PF07709 SRR: Seven Residue Re 68.7 3.3 7.2E-05 21.3 1.2 13 36-48 2-14 (14)
133 PRK04023 DNA polymerase II lar 65.4 3.8 8.2E-05 46.0 2.0 71 112-205 609-680 (1121)
134 PRK00635 excinuclease ABC subu 64.6 4.1 9E-05 49.0 2.3 25 316-343 1721-1746(1809)
135 TIGR00630 uvra excinuclease AB 63.4 3.3 7.2E-05 46.8 1.2 30 174-203 738-774 (924)
136 PF07739 TipAS: TipAS antibiot 61.5 10 0.00022 31.1 3.5 52 5-61 51-104 (118)
137 COG1198 PriA Primosomal protei 59.6 11 0.00024 41.5 4.2 50 129-197 435-484 (730)
138 PF12434 Malate_DH: Malate deh 59.2 10 0.00023 23.2 2.3 16 12-27 10-25 (28)
139 TIGR00757 RNaseEG ribonuclease 49.7 7.4 0.00016 40.0 0.9 26 161-186 379-404 (414)
140 TIGR00340 zpr1_rel ZPR1-relate 49.1 49 0.0011 29.5 5.9 20 205-224 78-98 (163)
141 PF14687 DUF4460: Domain of un 48.8 36 0.00078 28.3 4.8 44 8-51 4-55 (112)
142 PRK12336 translation initiatio 48.2 1E+02 0.0022 28.4 8.2 36 204-239 149-185 (201)
143 PRK00488 pheS phenylalanyl-tRN 47.8 15 0.00033 36.6 2.8 31 127-168 258-288 (339)
144 TIGR03655 anti_R_Lar restricti 47.6 30 0.00064 24.5 3.6 12 146-157 2-13 (53)
145 PF12991 DUF3875: Domain of un 47.1 24 0.00051 25.4 2.9 25 314-338 26-52 (54)
146 TIGR00595 priA primosomal prot 46.5 19 0.00041 38.0 3.4 51 129-198 213-263 (505)
147 PRK05580 primosome assembly pr 46.4 17 0.00036 39.9 3.1 61 119-198 366-431 (679)
148 PRK14559 putative protein seri 45.6 13 0.00029 40.4 2.1 49 130-197 2-50 (645)
149 PF13719 zinc_ribbon_5: zinc-r 43.7 9.5 0.00021 25.1 0.4 6 190-195 27-32 (37)
150 PF02814 UreE_N: UreE urease a 43.6 60 0.0013 23.9 4.9 33 271-303 29-61 (65)
151 PF03833 PolC_DP2: DNA polymer 42.3 8.3 0.00018 42.6 0.0 54 130-205 656-709 (900)
152 PRK00349 uvrA excinuclease ABC 42.0 10 0.00022 43.2 0.6 35 146-184 739-773 (943)
153 PRK00635 excinuclease ABC subu 41.8 9.5 0.00021 46.1 0.4 31 173-203 1608-1645(1809)
154 PRK11712 ribonuclease G; Provi 38.2 13 0.00028 39.1 0.7 26 161-186 391-416 (489)
155 PF08792 A2L_zn_ribbon: A2L zi 37.9 33 0.00073 22.0 2.3 12 146-157 4-15 (33)
156 COG5552 Uncharacterized conser 37.6 91 0.002 24.0 4.9 32 2-33 7-38 (88)
157 PF07092 DUF1356: Protein of u 36.5 19 0.00041 34.0 1.4 14 173-186 39-52 (238)
158 PF03367 zf-ZPR1: ZPR1 zinc-fi 36.0 61 0.0013 28.8 4.5 35 146-180 2-38 (161)
159 PF04246 RseC_MucC: Positive r 35.1 53 0.0011 27.9 3.9 21 203-223 41-61 (135)
160 PF01155 HypA: Hydrogenase exp 34.7 24 0.00051 29.3 1.6 9 146-154 71-79 (113)
161 COG0178 UvrA Excinuclease ATPa 34.6 16 0.00035 40.5 0.7 33 147-183 732-764 (935)
162 PRK12380 hydrogenase nickel in 34.2 44 0.00095 27.8 3.1 9 129-137 70-78 (113)
163 PRK12380 hydrogenase nickel in 33.8 52 0.0011 27.3 3.5 7 146-152 71-77 (113)
164 COG1326 Uncharacterized archae 33.7 53 0.0011 30.1 3.7 21 284-304 66-86 (201)
165 PF03589 Antiterm: Antitermina 32.8 16 0.00036 29.5 0.3 12 173-184 33-44 (95)
166 PRK14873 primosome assembly pr 32.5 44 0.00096 36.6 3.6 57 121-197 370-431 (665)
167 PRK00464 nrdR transcriptional 32.4 50 0.0011 29.2 3.3 35 147-181 2-37 (154)
168 PF07295 DUF1451: Protein of u 32.0 45 0.00097 29.2 2.9 13 189-201 131-143 (146)
169 TIGR00100 hypA hydrogenase nic 31.5 64 0.0014 26.9 3.7 11 173-183 87-97 (115)
170 PRK03564 formate dehydrogenase 30.5 47 0.001 32.8 3.1 10 129-138 187-196 (309)
171 PF05180 zf-DNL: DNL zinc fing 30.2 34 0.00073 25.8 1.6 13 146-158 5-17 (66)
172 PF13248 zf-ribbon_3: zinc-rib 30.1 20 0.00043 21.6 0.3 21 173-195 3-23 (26)
173 smart00440 ZnF_C2C2 C2C2 Zinc 29.4 93 0.002 20.7 3.5 16 147-162 2-17 (40)
174 PF10080 DUF2318: Predicted me 29.4 79 0.0017 25.9 3.8 12 146-157 36-47 (102)
175 PF14354 Lar_restr_allev: Rest 29.2 67 0.0015 23.1 3.1 32 146-180 4-37 (61)
176 KOG0315 G-protein beta subunit 29.1 37 0.00081 32.5 2.0 31 259-289 19-50 (311)
177 PRK13263 ureE urease accessory 28.7 1.2E+02 0.0025 28.2 5.2 45 258-303 23-67 (206)
178 PF07092 DUF1356: Protein of u 28.5 27 0.00058 33.0 1.0 13 130-142 39-51 (238)
179 PRK05978 hypothetical protein; 27.5 34 0.00074 30.0 1.4 8 188-195 52-59 (148)
180 COG3809 Uncharacterized protei 27.3 36 0.00078 26.4 1.3 8 189-196 22-29 (88)
181 KOG3442 Uncharacterized conser 27.3 98 0.0021 26.3 3.9 47 2-48 63-109 (132)
182 TIGR00100 hypA hydrogenase nic 27.2 74 0.0016 26.5 3.3 30 128-157 69-98 (115)
183 PF07754 DUF1610: Domain of un 26.8 49 0.0011 19.8 1.5 7 173-179 17-23 (24)
184 PF13717 zinc_ribbon_4: zinc-r 26.5 56 0.0012 21.3 2.0 6 190-195 27-32 (36)
185 PF11023 DUF2614: Protein of u 26.5 33 0.00072 28.5 1.1 27 171-197 68-94 (114)
186 PF03811 Zn_Tnp_IS1: InsA N-te 25.8 49 0.0011 21.7 1.6 9 147-155 7-15 (36)
187 PRK08351 DNA-directed RNA poly 25.0 71 0.0015 23.7 2.5 26 174-203 5-30 (61)
188 COG5216 Uncharacterized conser 24.9 44 0.00095 24.5 1.3 15 108-122 30-44 (67)
189 PF08273 Prim_Zn_Ribbon: Zinc- 24.7 57 0.0012 22.0 1.8 10 130-139 4-13 (40)
190 cd05792 S1_eIF1AD_like S1_eIF1 24.6 2.8E+02 0.006 21.6 5.8 23 267-289 8-31 (78)
191 PRK02935 hypothetical protein; 24.6 44 0.00095 27.5 1.4 27 171-197 69-95 (110)
192 PLN00115 pollen allergen group 24.2 4.3E+02 0.0094 22.2 7.4 78 205-299 25-112 (118)
193 PF14353 CpXC: CpXC protein 24.0 32 0.00069 29.0 0.6 38 146-183 2-49 (128)
194 PF14205 Cys_rich_KTR: Cystein 23.6 1.4E+02 0.003 21.6 3.6 12 189-200 29-40 (55)
195 COG2093 DNA-directed RNA polym 23.4 63 0.0014 24.0 1.9 21 191-211 21-41 (64)
196 COG3128 PiuC Uncharacterized i 23.3 94 0.002 28.5 3.4 40 251-291 113-152 (229)
197 PF01333 Apocytochr_F_C: Apocy 23.1 62 0.0013 27.1 2.0 56 270-328 23-82 (118)
198 PTZ00111 DNA replication licen 23.0 3.4E+02 0.0075 30.9 8.4 14 329-342 568-581 (915)
199 PF12387 Peptidase_C74: Pestiv 22.8 52 0.0011 29.5 1.6 23 130-155 163-185 (200)
200 PF06975 DUF1299: Protein of u 22.4 24 0.00053 23.9 -0.3 11 41-51 10-20 (47)
201 cd04479 RPA3 RPA3: A subfamily 22.2 4.2E+02 0.0091 21.3 7.4 68 269-343 28-95 (101)
202 PRK14113 urease accessory prot 22.0 1.8E+02 0.0038 25.6 4.9 44 259-303 18-61 (152)
203 cd02639 R3H_RRM R3H domain of 21.9 1.1E+02 0.0024 22.4 3.0 21 321-341 17-37 (60)
204 PRK11032 hypothetical protein; 21.3 92 0.002 27.7 2.9 14 14-27 3-16 (160)
205 PF01155 HypA: Hydrogenase exp 21.3 43 0.00094 27.8 0.8 30 128-157 69-98 (113)
206 PF10041 DUF2277: Uncharacteri 21.2 3.3E+02 0.0071 21.1 5.4 46 3-48 8-60 (78)
207 COG1530 CafA Ribonucleases G a 21.2 1E+02 0.0022 32.5 3.7 26 161-186 384-409 (487)
208 COG0089 RplW Ribosomal protein 21.1 79 0.0017 25.5 2.2 20 3-22 25-44 (94)
209 PF02963 EcoRI: Restriction en 21.0 55 0.0012 30.3 1.5 38 272-310 162-199 (257)
210 COG2190 NagE Phosphotransferas 20.7 1.3E+02 0.0029 26.6 3.8 48 272-326 62-112 (156)
211 KOG3960 Myogenic helix-loop-he 20.4 73 0.0016 30.3 2.2 19 35-53 128-151 (284)
212 PF02426 MIase: Muconolactone 20.1 1.7E+02 0.0036 23.5 3.9 23 318-340 3-25 (91)
213 TIGR00595 priA primosomal prot 20.1 60 0.0013 34.3 1.8 40 128-181 221-262 (505)
214 smart00276 GLECT Galectin. Gal 20.1 3.4E+02 0.0073 22.6 6.1 22 207-228 2-23 (128)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.1e-100 Score=772.79 Aligned_cols=386 Identities=47% Similarity=0.896 Sum_probs=348.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCCcccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDIF 81 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~~d~F 81 (401)
+||||+++||.+|||+|||+||++||||+|+++++|++|++||||||||+||+.||+||+.++.++. ++.++.|+|
T Consensus 32 ~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~~~d~~d~f 107 (421)
T PTZ00037 32 EVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----QPADASDLF 107 (421)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----CCcchhhhH
Confidence 6899999999999999999999999999999889999999999999999999999999998776321 224567899
Q ss_pred ccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEEE
Q 015732 82 QSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIR 161 (401)
Q Consensus 82 ~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~ 161 (401)
+.|||++ +++.++++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.......+|+.|+|+|+++..+
T Consensus 108 ~~~Fggg-----~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~ 182 (421)
T PTZ00037 108 DLIFGGG-----RKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIR 182 (421)
T ss_pred HHhhccc-----cccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEE
Confidence 9999752 11123467999999999999999999999999999999999999998877778999999999999999
Q ss_pred ecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEE
Q 015732 162 HLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVL 241 (401)
Q Consensus 162 ~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i 241 (401)
++|| |+++++++|+.|+|+|+++..+++|+.|+|.|++.+.++++|+||+|+.+|++|+|+|+|++.+++.||||||+|
T Consensus 183 ~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I 261 (421)
T PTZ00037 183 QMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFIL 261 (421)
T ss_pred eecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEE
Confidence 9999 899999999999999999988899999999999999999999999999999999999999998899999999999
Q ss_pred EEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEE
Q 015732 242 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIH 321 (401)
Q Consensus 242 ~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~ 321 (401)
.+++|+.|+|+|+|||+++.|||+|||+|+++.|+||||+.|.|++|||+|++||++++|+|+|||..++++.+|||||+
T Consensus 262 ~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~ 341 (421)
T PTZ00037 262 NEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVT 341 (421)
T ss_pred EecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEE
Confidence 99999999999999999999999999999999999999998999999999999999999999999987655678999999
Q ss_pred EEEeCC--CCCCHHHHHHHHhhCCCCCCCCCccCcccccceeeeccCChhHHHHHHhhhcccccccCCCC--CCCCCCCC
Q 015732 322 FTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDDM--QGGAQRVQ 397 (401)
Q Consensus 322 ~~V~~P--~~l~~~~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 397 (401)
|+|.|| +.||++|+++|++|||.++.... +++..++|+++++++++++...+ .++++|+||+|+ ++++++||
T Consensus 342 ~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~ 417 (421)
T PTZ00037 342 FEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDEHHQEGERVA 417 (421)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccccCCCCCccc
Confidence 999999 88999999999999997654443 56678899999999999876544 235566555443 34678999
Q ss_pred CcCC
Q 015732 398 CAQQ 401 (401)
Q Consensus 398 c~~q 401 (401)
||||
T Consensus 418 c~~q 421 (421)
T PTZ00037 418 CRQQ 421 (421)
T ss_pred cCCC
Confidence 9998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-95 Score=706.77 Aligned_cols=334 Identities=40% Similarity=0.720 Sum_probs=302.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHhCCccccccccccCccccccCC-CC-CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGG-D---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GG-GGGAH 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~-~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~-~~-g~~~~ 75 (401)
+||||+++||++||||||||||+|||||+|+ + ++|||||++||||||||+||++||+||+.++++++ ++ +.+++
T Consensus 8 eiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~f 87 (371)
T COG0484 8 EILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGF 87 (371)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCC
Confidence 6999999999999999999999999999999 4 38999999999999999999999999999987332 22 11112
Q ss_pred --CCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccCCc
Q 015732 76 --DPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQ 152 (401)
Q Consensus 76 --~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~ 152 (401)
++.|||++|||++++ +.+++.++++|.|+.+.|+|||+|+|.|+++++.+++.+.|+.|+|+|++.++ ..+|++|+
T Consensus 88 gg~~~DIF~~~FgGg~~-~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~ 166 (371)
T COG0484 88 GGDFGDIFEDFFGGGGG-GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCN 166 (371)
T ss_pred CCCHHHHHHHhhcCCCc-ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCC
Confidence 578999999975422 22334457899999999999999999999999999999999999999999985 58999999
Q ss_pred ccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC-C
Q 015732 153 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 231 (401)
Q Consensus 153 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g 231 (401)
|+|.+...+++ ++++++++|+.|+|+|++|. ++|+.|+|.|++.+.++|+|+||+|+.+|++|++.|+|++.+ +
T Consensus 167 G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~G 241 (371)
T COG0484 167 GSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNG 241 (371)
T ss_pred CcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCC
Confidence 99998888877 45778999999999999995 999999999999999999999999999999999999999976 7
Q ss_pred CCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCC
Q 015732 232 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 311 (401)
Q Consensus 232 ~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~ 311 (401)
+++|||||+|.|++|+.|.|+|+|||++++|++.+|++|+++.|+||||+ +.|+|||| +++|++++|+|+|||..+
T Consensus 242 gp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~- 317 (371)
T COG0484 242 GPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR- 317 (371)
T ss_pred CCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC-
Confidence 78999999999999999999999999999999999999999999999999 99999999 588999999999999863
Q ss_pred CCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 015732 312 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 345 (401)
Q Consensus 312 ~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~~ 345 (401)
+..+|||||+|+|++|++|+.+|+++|+++....
T Consensus 318 ~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 318 SGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999998744
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-87 Score=646.73 Aligned_cols=329 Identities=58% Similarity=1.004 Sum_probs=308.6
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCCccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDI 80 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~~d~ 80 (401)
+||||+++||++|||||||+||++|||||||++ +|||+|++||||||||+||++||+||++++++|+++++.+ .
T Consensus 8 ~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~----~- 82 (337)
T KOG0712|consen 8 DILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFG----G- 82 (337)
T ss_pred eeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCc----c-
Confidence 699999999999999999999999999999986 9999999999999999999999999999997654333221 2
Q ss_pred cccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEE
Q 015732 81 FQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSI 160 (401)
Q Consensus 81 F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 160 (401)
|++||+.+++ .++++.||+|++|.++|||+|+|.|.++++.++++.+|+.|+|+|..+++..+|+.|.|+|+.+.+
T Consensus 83 f~~~F~~g~~----~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~ 158 (337)
T KOG0712|consen 83 FSQFFGFGGN----GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRT 158 (337)
T ss_pred HHHhccCCCc----CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEE
Confidence 8888874321 122334499999999999999999999999999999999999999999988899999999999999
Q ss_pred EecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEE
Q 015732 161 RHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFV 240 (401)
Q Consensus 161 ~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~ 240 (401)
+++||||+|+++..|..|+|+|.+++.+++|+.|.|++++.+.+.++|+|++|++++++|+|.|++++.++..|||+++.
T Consensus 159 ~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~ 238 (337)
T KOG0712|consen 159 RQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLL 238 (337)
T ss_pred EeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEE
Q 015732 241 LQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI 320 (401)
Q Consensus 241 i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v 320 (401)
|..++|+.|.|+|+||++..+|+|.||||||.+.+.||||+.|.++++||+||+||++++|+|+|||+++++ +|||||
T Consensus 239 i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~lyi 316 (337)
T KOG0712|consen 239 IDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLYI 316 (337)
T ss_pred ecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 999999
Q ss_pred EEEEeCCCCCCHHHHHHHHhhC
Q 015732 321 HFTVDFPESLSPDQCKMLETVL 342 (401)
Q Consensus 321 ~~~V~~P~~l~~~~~~~l~~~l 342 (401)
+|+|+||+ ++++++..|+.+|
T Consensus 317 ~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 317 KFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EEEEEcCC-CChHHHHHHHhhC
Confidence 99999999 9999999999876
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-86 Score=661.32 Aligned_cols=333 Identities=29% Similarity=0.534 Sum_probs=297.5
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCC--CCC-C---
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGG-G--- 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~--~~g-~--- 72 (401)
+||||+++||++|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..+. +++ +
T Consensus 8 ~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (372)
T PRK14296 8 EVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFE 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCccc
Confidence 68999999999999999999999999999975 38999999999999999999999999998775311 111 0
Q ss_pred ---------CCCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccC
Q 015732 73 ---------GAHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 143 (401)
Q Consensus 73 ---------~~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~ 143 (401)
++.++.|+|++|||++ +++.+++++|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+
T Consensus 88 ~~~~~~~~~g~~~f~d~f~~~fggg----~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 163 (372)
T PRK14296 88 DLFSNMGSSGFSSFTNIFSDFFGSN----KSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESN 163 (372)
T ss_pred cccccccccccccchhhhhhhcCCC----ccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCC
Confidence 0112347788888642 112233467999999999999999999999999999999999999999876
Q ss_pred C-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEec
Q 015732 144 A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 222 (401)
Q Consensus 144 ~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 222 (401)
. ..+|+.|+|+|+++..+++|| |+++++++|+.|+|+|+++. ++|+.|+|+|++.+.+.++|.||+|+++|++|+|
T Consensus 164 ~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 240 (372)
T PRK14296 164 SDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKL 240 (372)
T ss_pred CCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEEEE
Confidence 5 478999999999999999999 66688999999999999986 8899999999999999999999999999999999
Q ss_pred cCCcCCC-CCCCcccEEEEEEEeeCCcceec-CcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEE
Q 015732 223 PGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 300 (401)
Q Consensus 223 ~g~G~~~-~g~~~GDliv~i~~~~h~~f~R~-g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~ 300 (401)
+|+|++. +++.+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|+||++ ++||++++
T Consensus 241 ~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~r 317 (372)
T PRK14296 241 SQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELII 317 (372)
T ss_pred eccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEEE
Confidence 9999986 57889999999999999999996 89999999999999999999999999998 89999987 89999999
Q ss_pred ecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 301 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 301 i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 318 i~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred EcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999996645567899999999999999999999999999964
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.4e-85 Score=650.95 Aligned_cols=331 Identities=29% Similarity=0.561 Sum_probs=290.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 77 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~ 77 (401)
+||||+++||++|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+.++..+.+++.++.++
T Consensus 7 ~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~ 86 (369)
T PRK14288 7 EILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSDF 86 (369)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccccccc
Confidence 69999999999999999999999999999983 38999999999999999999999999998776321111112233
Q ss_pred c----cccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcc
Q 015732 78 F----DIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQG 153 (401)
Q Consensus 78 ~----d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 153 (401)
| ++|++|||+++. +++..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.......+|+.|+|
T Consensus 87 f~~~~~~F~~~fg~g~~--~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 164 (369)
T PRK14288 87 FEDLGSFFEDAFGFGAR--GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNG 164 (369)
T ss_pred hhhHHHHHHhhcCCCCc--ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCC
Confidence 3 345555643210 1112234679999999999999999999999999999999999999998876789999999
Q ss_pred cceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCC
Q 015732 154 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 233 (401)
Q Consensus 154 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~ 233 (401)
+|+++..+ |++ +++++|+.|+|+|+++. +.|+.|+|.|++.+.++++|.||||+++|++|+|+|+|++.+++.
T Consensus 165 ~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~ 237 (369)
T PRK14288 165 QGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGK 237 (369)
T ss_pred CcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCC
Confidence 99876543 354 56779999999999986 889999999999999999999999999999999999999988889
Q ss_pred cccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCC
Q 015732 234 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 313 (401)
Q Consensus 234 ~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 313 (401)
+|||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|+||++ ++||++++|+|+|||..+ +.
T Consensus 238 ~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~-~~ 314 (369)
T PRK14288 238 RGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHPE-SS 314 (369)
T ss_pred CCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCCC-CC
Confidence 999999999999999999999999999999999999999999999999889999997 799999999999999764 34
Q ss_pred CCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 314 MRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 314 ~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
.+|||||+|+|.||++|+++|+++|+++++.
T Consensus 315 ~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 315 YRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999999999974
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.8e-83 Score=637.64 Aligned_cols=333 Identities=33% Similarity=0.613 Sum_probs=297.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-----CCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-----GGG 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-----g~~ 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||+.||+||+++++.++++ +++
T Consensus 9 ~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (377)
T PRK14298 9 EILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGAD 88 (377)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCC
Confidence 68999999999999999999999999999975 3899999999999999999999999999877642111 111
Q ss_pred CCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCe-eeccCCc
Q 015732 74 AHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 152 (401)
Q Consensus 74 ~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 152 (401)
+.++.|+|++|||+++ ++++.++++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.. .+|+.|+
T Consensus 89 ~~~~~d~f~~~Fgg~~---~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 165 (377)
T PRK14298 89 FGGFGDIFEMFFGGGG---RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCG 165 (377)
T ss_pred cCcchhhhHhhhcCCC---ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCC
Confidence 2335588999997531 11123356899999999999999999999999999999999999999987764 7899999
Q ss_pred ccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCC-CC
Q 015732 153 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PD 231 (401)
Q Consensus 153 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~g 231 (401)
|+|+++..++. |+++++++++|+.|+|+|+++. ++|+.|+|+|++.+.++++|+||||+++|++|+|+|+|++. ++
T Consensus 166 G~G~~~~~~~~-~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~ 242 (377)
T PRK14298 166 GTGQVTTTRST-PLGQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPG 242 (377)
T ss_pred CccEEEEEEec-CceeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCC
Confidence 99999888885 4456689999999999999986 88999999999999999999999999999999999999995 57
Q ss_pred CCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCC
Q 015732 232 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 311 (401)
Q Consensus 232 ~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~ 311 (401)
+.+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 243 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~- 318 (377)
T PRK14298 243 APSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH- 318 (377)
T ss_pred CCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC-
Confidence 88999999999999999999999999999999999999999999999998 78999998 799999999999999764
Q ss_pred CCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 312 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 312 ~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
...+|||||+|+|.||+.|+++++++|++++..
T Consensus 319 ~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 319 GHGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999999999863
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-83 Score=637.26 Aligned_cols=333 Identities=33% Similarity=0.656 Sum_probs=292.9
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-C-CC--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GG-- 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g-~~-- 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+++++.+.++ + ++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~ 87 (372)
T PRK14286 8 DILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYT 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCcc
Confidence 68999999999999999999999999999973 3899999999999999999999999999887632111 1 11
Q ss_pred -----CCCCccccccccCCCCCCC--CCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCe-
Q 015732 74 -----AHDPFDIFQSFFGGSPFGG--SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS- 145 (401)
Q Consensus 74 -----~~~~~d~F~~fFgg~~f~g--~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~- 145 (401)
+.++.|+|++|||+++.++ +++..++++|.|+.+.|.|||+|+|+|+++++.+++.+.|++|+|+|......
T Consensus 88 ~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 167 (372)
T PRK14286 88 DFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSP 167 (372)
T ss_pred cccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCC
Confidence 1234588999997532110 11122346899999999999999999999999999999999999999987654
Q ss_pred eeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCC
Q 015732 146 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 225 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 225 (401)
.+|+.|+|+|+++..+ |++ +++++|+.|+|+|+++. ++|+.|+|+|++.+.+.++|+||+|+++|++|+|+|+
T Consensus 168 ~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGE 240 (372)
T ss_pred ccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCc
Confidence 7899999999876543 455 47889999999999986 8899999999999999999999999999999999999
Q ss_pred cCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCC
Q 015732 226 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDE 304 (401)
Q Consensus 226 G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~ 304 (401)
|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+.|.|+||++ +++|++++|+|+
T Consensus 241 G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~ 318 (372)
T PRK14286 241 GEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGH 318 (372)
T ss_pred cccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCC
Confidence 99976 457799999999999999999999999999999999999999999999999899999998 899999999999
Q ss_pred CCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 305 GMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 305 Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
|||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 319 G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 319 GMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred CCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999764 346899999999999999999999999999964
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-82 Score=636.12 Aligned_cols=336 Identities=31% Similarity=0.593 Sum_probs=296.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhCCccccccccccCccccccCC-CCC-C-CCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGG-G-GAH 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~---~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~-~~g-~-~~~ 75 (401)
+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||||||||++|++||+||++...++. +++ + ++.
T Consensus 7 ~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~ 86 (378)
T PRK14278 7 GLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFG 86 (378)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcC
Confidence 699999999999999999999999999999863 7999999999999999999999999986433211 111 1 112
Q ss_pred CCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccCCccc
Q 015732 76 DPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGS 154 (401)
Q Consensus 76 ~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~ 154 (401)
++.|+|++|||+++. +.+....+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.+.+. ..+|+.|+|+
T Consensus 87 ~~~d~f~~ffgg~g~-~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~ 165 (378)
T PRK14278 87 GLGDVFEAFFGGGAA-SRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGR 165 (378)
T ss_pred chhHHHHHHhCCCCC-CCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCc
Confidence 345889999975311 11111234679999999999999999999999999999999999999998765 4789999999
Q ss_pred ceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC-CCC
Q 015732 155 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 233 (401)
Q Consensus 155 G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~ 233 (401)
|+++..++.++|++++ +++|+.|+|+|+++. ++|+.|+|+|++.+.++++|.||||+++|++|+|+|+|++.+ +..
T Consensus 166 G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 242 (378)
T PRK14278 166 GEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP 242 (378)
T ss_pred eEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence 9999888888888764 669999999999986 889999999999999999999999999999999999999977 457
Q ss_pred cccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCC
Q 015732 234 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 313 (401)
Q Consensus 234 ~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 313 (401)
+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+|||++.|.|+||++ +++|++++|+|+|||..+ ..
T Consensus 243 ~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~-~~ 319 (378)
T PRK14278 243 AGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLR-SG 319 (378)
T ss_pred CCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCC-CC
Confidence 899999999999999999999999999999999999999999999877899999998 899999999999999764 34
Q ss_pred CCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 314 MRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 314 ~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
.+|||||+|+|.||+.||++|+++|+++++.
T Consensus 320 ~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 320 GRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999999999964
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-82 Score=634.85 Aligned_cols=334 Identities=30% Similarity=0.580 Sum_probs=298.2
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-C-CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GGAHD 76 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g-~~~~~ 76 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..+.++ + +++.+
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~~ 87 (371)
T PRK14287 8 EVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCccccc
Confidence 68999999999999999999999999999975 3799999999999999999999999999877643211 1 11123
Q ss_pred CccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccCCcccc
Q 015732 77 PFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGSG 155 (401)
Q Consensus 77 ~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G 155 (401)
+.|+|++|||+++ +.+.+..+++|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..... ..+|+.|+|+|
T Consensus 88 ~~d~f~~~fgg~~--~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 165 (371)
T PRK14287 88 FSDIFDMFFGGGG--GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSG 165 (371)
T ss_pred hHHHHHhhhcccc--CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEE
Confidence 4589999997531 11111234579999999999999999999999999999999999999998765 46899999999
Q ss_pred eEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC-CCCc
Q 015732 156 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVT 234 (401)
Q Consensus 156 ~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~ 234 (401)
++...++++|||+++ +++|+.|.|+|+++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.+ +..+
T Consensus 166 ~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~ 242 (371)
T PRK14287 166 QLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPP 242 (371)
T ss_pred EEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCC
Confidence 999999999999875 779999999999986 889999999999999999999999999999999999999864 5688
Q ss_pred ccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCC
Q 015732 235 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFM 314 (401)
Q Consensus 235 GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~ 314 (401)
|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..++ ..
T Consensus 243 GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~-~~ 318 (371)
T PRK14287 243 GDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVHG-RG 318 (371)
T ss_pred ccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCCC-CC
Confidence 99999999999999999999999999999999999999999999998 79999998 7999999999999997643 45
Q ss_pred CCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 315 RGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 315 ~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+|||||+|+|.||+.|+.+|+++|++++..
T Consensus 319 ~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 319 QGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999999953
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-82 Score=636.62 Aligned_cols=333 Identities=31% Similarity=0.572 Sum_probs=298.1
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCC---C-C--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---G-G-- 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~---g-~-- 72 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+++++++.++ + +
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14276 8 DRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGF 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCc
Confidence 69999999999999999999999999999975 3899999999999999999999999999887643111 1 0
Q ss_pred ----CCCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eee
Q 015732 73 ----GAHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMK 147 (401)
Q Consensus 73 ----~~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~ 147 (401)
++.++.|+|++|||+++ +.+.+..+++|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~ 165 (380)
T PRK14276 88 DGSGGFGGFEDIFSSFFGGGG--ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVT 165 (380)
T ss_pred cccccccchhhHHHHHhCccc--cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCcc
Confidence 11244588999997531 11112334689999999999999999999999999999999999999998765 478
Q ss_pred ccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcC
Q 015732 148 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 227 (401)
Q Consensus 148 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 227 (401)
|+.|+|+|+++..++++|||+++ +++|+.|+|+|+++. ++|+.|+|+|++.+.++++|+||+|+++|++|+|+|+|+
T Consensus 166 C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~ 242 (380)
T PRK14276 166 CGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE 242 (380)
T ss_pred CCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence 99999999999999999999876 779999999999986 889999999999999999999999999999999999999
Q ss_pred CCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCC
Q 015732 228 EAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 306 (401)
Q Consensus 228 ~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gm 306 (401)
+.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++|+|+||
T Consensus 243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G~ 319 (380)
T PRK14276 243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKGA 319 (380)
T ss_pred CCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCCc
Confidence 865 457899999999999999999999999999999999999999999999998 78999998 79999999999999
Q ss_pred cCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 307 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 307 p~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
|..+ ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 320 p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~ 355 (380)
T PRK14276 320 PKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355 (380)
T ss_pred CCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9764 34679999999999999999999999999995
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-82 Score=635.05 Aligned_cols=333 Identities=32% Similarity=0.623 Sum_probs=297.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCCCC----C-
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG----G- 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~----~- 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||+++++.++++++ +
T Consensus 8 ~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~ 87 (376)
T PRK14280 8 EVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDF 87 (376)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCc
Confidence 69999999999999999999999999999975 389999999999999999999999999988764321110 1
Q ss_pred --CCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccC
Q 015732 74 --AHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 150 (401)
Q Consensus 74 --~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~ 150 (401)
++++.|+|++|||+++. ++.+..+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+. ..+|+.
T Consensus 88 ~~~~~~~d~f~~~fgg~~~--~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (376)
T PRK14280 88 GGGFGFEDIFSSFFGGGGR--RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSH 165 (376)
T ss_pred cccccchhhHHHHhCCccc--cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCC
Confidence 12456899999975311 1112234679999999999999999999999999999999999999998765 478999
Q ss_pred CcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC
Q 015732 151 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP 230 (401)
Q Consensus 151 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 230 (401)
|+|+|++...++++||+++ ++++|+.|+|+|+++. ++|+.|+|+|++.+.++++|.||+|+++|++|+|+|+|++.+
T Consensus 166 C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~ 242 (376)
T PRK14280 166 CGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV 242 (376)
T ss_pred CCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence 9999999999999999886 5789999999999986 889999999999999999999999999999999999999855
Q ss_pred -CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCC
Q 015732 231 -DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 309 (401)
Q Consensus 231 -g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~ 309 (401)
+..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..
T Consensus 243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~ 319 (376)
T PRK14280 243 NGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPNV 319 (376)
T ss_pred CCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCCC
Confidence 568899999999999999999999999999999999999999999999997 78999998 79999999999999976
Q ss_pred CCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 310 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 310 ~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
. ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 320 ~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~ 352 (376)
T PRK14280 320 R-GYGQGDQYVVVRVVTPTKLTDRQKELLREFAE 352 (376)
T ss_pred C-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 34689999999999999999999999999985
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.6e-82 Score=632.77 Aligned_cols=334 Identities=32% Similarity=0.622 Sum_probs=295.5
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccC-CCC-----C
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MGG-----G 71 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g-~~~-----g 71 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||+.||+||+++++.+ .++ +
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14277 9 EILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQG 88 (386)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCC
Confidence 68999999999999999999999999999984 3799999999999999999999999999877531 100 1
Q ss_pred C---CC-----CCCccccccccCCCCCCCCC--CCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCc
Q 015732 72 G---GA-----HDPFDIFQSFFGGSPFGGSS--RGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 141 (401)
Q Consensus 72 ~---~~-----~~~~d~F~~fFgg~~f~g~~--~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~ 141 (401)
+ ++ .++.|+|++||++. |++++ +...+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 89 g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 167 (386)
T PRK14277 89 GFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAK 167 (386)
T ss_pred CccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcC
Confidence 0 00 12336788888642 32211 11234679999999999999999999999999999999999999998
Q ss_pred cCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEE
Q 015732 142 SGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 220 (401)
Q Consensus 142 ~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 220 (401)
... ..+|+.|+|+|+++..++++||++++. ++|+.|+|+|+++. ++|+.|+|+|++.+.+.++|.||+|+++|++|
T Consensus 168 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 244 (386)
T PRK14277 168 PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMI 244 (386)
T ss_pred CCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcEE
Confidence 765 478999999999999999999998765 79999999999986 88999999999999999999999999999999
Q ss_pred eccCCcCCC-CCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEE
Q 015732 221 TFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 299 (401)
Q Consensus 221 ~~~g~G~~~-~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~ 299 (401)
+|+|+|++. .+..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|+++
T Consensus 245 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ 321 (386)
T PRK14277 245 TLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKF 321 (386)
T ss_pred EEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEE
Confidence 999999984 4567899999999999999999999999999999999999999999999998 89999998 7999999
Q ss_pred EecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 300 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 300 ~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
+|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 322 ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~ 364 (386)
T PRK14277 322 RLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEK 364 (386)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 999999997643 4689999999999999999999999999985
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-81 Score=630.05 Aligned_cols=335 Identities=33% Similarity=0.640 Sum_probs=298.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCC---CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---GGGGA 74 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~---~g~~~ 74 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||+++++.+.+ ++.++
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14297 8 EVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGG 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCC
Confidence 68999999999999999999999999999974 379999999999999999999999999988763211 11011
Q ss_pred ------CCCccccccccCCCCCCCC-CCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-ee
Q 015732 75 ------HDPFDIFQSFFGGSPFGGS-SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SM 146 (401)
Q Consensus 75 ------~~~~d~F~~fFgg~~f~g~-~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~ 146 (401)
.++.|+|++|||++ +++. ++...+++|.|+++.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+. ..
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 166 (380)
T PRK14297 88 FDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPK 166 (380)
T ss_pred cCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCc
Confidence 13458899999752 2211 122334679999999999999999999999999999999999999998765 47
Q ss_pred eccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCc
Q 015732 147 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 226 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G 226 (401)
+|+.|+|+|+++..++++||+++ ++++|+.|+|+|.++. ++|+.|+|+|++.+.++++|+||+|+++|++|+|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G 243 (380)
T PRK14297 167 TCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQG 243 (380)
T ss_pred cCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCc
Confidence 89999999999999999998765 5889999999999986 88999999999999999999999999999999999999
Q ss_pred CCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCC
Q 015732 227 DEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 305 (401)
Q Consensus 227 ~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~G 305 (401)
++.+ +..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||+| +++|++++|+|+|
T Consensus 244 ~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G 320 (380)
T PRK14297 244 EHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKG 320 (380)
T ss_pred cCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCC
Confidence 9855 567899999999999999999999999999999999999999999999997 78999998 8999999999999
Q ss_pred CcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 306 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 306 mp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
||..+ ...+|||||+|+|.||+.|+++|+++|+++|+.
T Consensus 321 ~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 358 (380)
T PRK14297 321 VPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMFMEA 358 (380)
T ss_pred cCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 99763 446899999999999999999999999999974
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-81 Score=625.16 Aligned_cols=336 Identities=29% Similarity=0.577 Sum_probs=296.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCCccccccccccCccccccCC---CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM---GGGGG 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~---~~g~~ 73 (401)
+||||+++||++|||+|||+||++||||+|+. +++|++|++||||||||+||+.||+||++++..+. +++++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~ 87 (369)
T PRK14282 8 EILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGG 87 (369)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCc
Confidence 69999999999999999999999999999974 37999999999999999999999999987764211 11111
Q ss_pred C-C-------CC--ccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccC
Q 015732 74 A-H-------DP--FDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 143 (401)
Q Consensus 74 ~-~-------~~--~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~ 143 (401)
+ . ++ .|+|++|||+++ ++++...++++|+|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|+..+
T Consensus 88 ~~~~~~~~~~~~~~~d~f~~~fgg~~-~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 166 (369)
T PRK14282 88 FFEDIFKDFENIFNRDIFDIFFGERR-TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPG 166 (369)
T ss_pred ccccccccccccccchhhhHhhcccC-CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCC
Confidence 1 1 11 267888887421 11111233467999999999999999999999999999999999999999876
Q ss_pred C-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEec
Q 015732 144 A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 222 (401)
Q Consensus 144 ~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 222 (401)
. ..+|+.|+|+|+++..++++|||+++ +++|+.|+|+|+++. +.|+.|+|++++.+.++++|+||||+.+|++|+|
T Consensus 167 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 243 (369)
T PRK14282 167 SGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRI 243 (369)
T ss_pred CCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEE
Confidence 5 47899999999999999999999765 779999999999976 8899999999999999999999999999999999
Q ss_pred cCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEe
Q 015732 223 PGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAI 301 (401)
Q Consensus 223 ~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i 301 (401)
+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++|
T Consensus 244 ~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~iri 321 (369)
T PRK14282 244 TGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRL 321 (369)
T ss_pred ecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEEE
Confidence 99999854 678899999999999999999999999999999999999999999999999899999999 799999999
Q ss_pred cCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 302 NDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 302 ~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+|+|||..+ ...+|||||+|+|.+|+.|+++++++|++++..
T Consensus 322 ~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 322 KGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred CCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999753 346899999999999999999999999999864
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-81 Score=623.25 Aligned_cols=333 Identities=35% Similarity=0.652 Sum_probs=294.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-C--CC-
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G--GG- 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g--~~- 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||+.||+||+.++.++++. + ++
T Consensus 7 ~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~ 86 (365)
T PRK14285 7 EILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGF 86 (365)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCc
Confidence 68999999999999999999999999999974 2799999999999999999999999999877542110 0 01
Q ss_pred ------CCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-ee
Q 015732 74 ------AHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SM 146 (401)
Q Consensus 74 ------~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~ 146 (401)
+.++.|+|++|||++ ++ +.+...+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+. ..
T Consensus 87 ~~~~~~~~~~~d~f~~~fgg~-~~-~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 164 (365)
T PRK14285 87 SGFSDIFEDFGDIFDSFFTGN-RG-QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPS 164 (365)
T ss_pred cccccccccHHHHHHHhhcCC-cC-CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCc
Confidence 113447899999752 11 1111234679999999999999999999999999999999999999998765 46
Q ss_pred eccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCc
Q 015732 147 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 226 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G 226 (401)
+|+.|+|+|+++. ++||+ +++++|+.|+|+|+++. ++|+.|+|+|++.+.++++|+||||+++|++|+|+|+|
T Consensus 165 ~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 237 (365)
T PRK14285 165 ICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG 237 (365)
T ss_pred cCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence 8999999998653 56787 78999999999999986 89999999999999999999999999999999999999
Q ss_pred CCCCC-CCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCC
Q 015732 227 DEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 305 (401)
Q Consensus 227 ~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~G 305 (401)
++.++ ..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++|+|+|
T Consensus 238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~GkG 315 (365)
T PRK14285 238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNEG 315 (365)
T ss_pred ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCCC
Confidence 99764 56899999999999999999999999999999999999999999999999899999998 7999999999999
Q ss_pred CcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 015732 306 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 346 (401)
Q Consensus 306 mp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~~~ 346 (401)
||..+ ...+|||||+|+|.+|+.|+++++++|++++...+
T Consensus 316 ~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 316 MPILH-TEKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred ccCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99764 33579999999999999999999999999986544
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-80 Score=624.09 Aligned_cols=332 Identities=33% Similarity=0.611 Sum_probs=289.6
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCC--CCCCC-
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGA- 74 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~--~g~~~- 74 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||+||+.||+||++++.++.+ +++++
T Consensus 5 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~ 84 (391)
T PRK14284 5 TILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMG 84 (391)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcC
Confidence 69999999999999999999999999999984 379999999999999999999999999987643211 11110
Q ss_pred -----------------CCCccccccccCCCC--CCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcc
Q 015732 75 -----------------HDPFDIFQSFFGGSP--FGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKC 135 (401)
Q Consensus 75 -----------------~~~~d~F~~fFgg~~--f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C 135 (401)
..+.|+|++||++.+ |++...+.+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|
T Consensus 85 ~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C 164 (391)
T PRK14284 85 NMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDAC 164 (391)
T ss_pred cccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCC
Confidence 011367888886421 1111112234678999999999999999999999999999999999
Q ss_pred cCCCCccCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCC
Q 015732 136 KGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGM 214 (401)
Q Consensus 136 ~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~ 214 (401)
+|+|+..+. ..+|+.|+|+|+++..+ |++ +++++|+.|+|+|+++. ++|+.|+|+|++.+.++++|+||||+
T Consensus 165 ~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~ 237 (391)
T PRK14284 165 SGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPAGV 237 (391)
T ss_pred cccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECCCC
Confidence 999998765 47899999999877543 454 47889999999999986 88999999999999999999999999
Q ss_pred cCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecC-CcEEEEEeCCCcc
Q 015732 215 QNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQPGEV 292 (401)
Q Consensus 215 ~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ld-G~~l~i~ip~g~v 292 (401)
++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||| |+.|.|+||+|
T Consensus 238 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g-- 315 (391)
T PRK14284 238 DSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG-- 315 (391)
T ss_pred CCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc--
Confidence 9999999999999976 6788999999999999999999999999999999999999999999999 67799999998
Q ss_pred ccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 293 VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 293 i~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
+++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 316 ~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 316 IQSGTILKVRGQGFPNVH-GKGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred cCCCeEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 899999999999999764 34689999999999999999999999999985
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-80 Score=624.28 Aligned_cols=328 Identities=31% Similarity=0.585 Sum_probs=282.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCC------C-C
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM------G-G 70 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~------~-~ 70 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+.+..++. + +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~ 92 (392)
T PRK14279 13 KELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGG 92 (392)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCC
Confidence 69999999999999999999999999999983 38999999999999999999999999974322110 0 0
Q ss_pred C-CC--------CCCCc---------------cccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeee
Q 015732 71 G-GG--------AHDPF---------------DIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSL 126 (401)
Q Consensus 71 g-~~--------~~~~~---------------d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~ 126 (401)
+ ++ .++++ |+|++||++++ ++.++.++++|.|+.+.|.|||+|+|+|+++++.+
T Consensus 93 ~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~--~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~ 170 (392)
T PRK14279 93 GFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGG--GSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRL 170 (392)
T ss_pred CCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCC--cccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEee
Confidence 0 00 11222 34445554211 11122334679999999999999999999999999
Q ss_pred eeeeecCcccCCCCccCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEE
Q 015732 127 SRNVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 205 (401)
Q Consensus 127 ~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~ 205 (401)
++.+.|++|+|+|..... ..+|+.|+|+|+++..+ | ++ +++++|+.|+|+|+++. ++|+.|+|+|++.+.++
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~~~ 243 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGVTTRTRT 243 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeEEEEeee
Confidence 999999999999998765 47899999999876643 3 33 56799999999999986 88999999999999999
Q ss_pred EEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEE
Q 015732 206 LEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 284 (401)
Q Consensus 206 l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~ 284 (401)
++|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.
T Consensus 244 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~ 322 (392)
T PRK14279 244 INVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VG 322 (392)
T ss_pred eEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EE
Confidence 9999999999999999999999976 567899999999999999999999999999999999999999999999998 88
Q ss_pred EEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 285 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 285 i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 323 v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~ 377 (392)
T PRK14279 323 VKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAE 377 (392)
T ss_pred EEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999998 79999999999999963 34689999999999999999999999999996
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-80 Score=624.67 Aligned_cols=336 Identities=34% Similarity=0.636 Sum_probs=295.5
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCC--CCCC---
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGGG--- 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~--~~g~--- 72 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.+|+.||+||+++++.+. ++++
T Consensus 7 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~ 86 (397)
T PRK14281 7 EVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYG 86 (397)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCC
Confidence 79999999999999999999999999999974 38999999999999999999999999998775311 0110
Q ss_pred -CCCCCcccc---ccccCCCC-C------------CCCCCC---cccccCcceEEeEeeeeeeeecCceeeeeeeeeeec
Q 015732 73 -GAHDPFDIF---QSFFGGSP-F------------GGSSRG---RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 132 (401)
Q Consensus 73 -~~~~~~d~F---~~fFgg~~-f------------~g~~~~---~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C 132 (401)
+++++.|+| ++|||+++ + +++... ..+.+|.|+.+.|.|||+|+|+|+++++.+++.+.|
T Consensus 87 ~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C 166 (397)
T PRK14281 87 GGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPC 166 (397)
T ss_pred cCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecC
Confidence 112333454 57887521 1 111011 122478999999999999999999999999999999
Q ss_pred CcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcC
Q 015732 133 TKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 212 (401)
Q Consensus 133 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 212 (401)
+.|+|+|...+...+|+.|+|+|+++..+++++|++++ +++|+.|+|+|+++. ++|+.|+|++++.+.++++|+||+
T Consensus 167 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 167 KECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred CCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEEecCC
Confidence 99999999887668999999999999999999988765 679999999999986 889999999999999999999999
Q ss_pred CCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCc
Q 015732 213 GMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 291 (401)
Q Consensus 213 G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~ 291 (401)
|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+|
T Consensus 244 G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g- 321 (397)
T PRK14281 244 GVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG- 321 (397)
T ss_pred CCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc-
Confidence 999999999999999976 568999999999999999999999999999999999999999999999997 88999998
Q ss_pred cccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 292 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 292 vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 322 -~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 322 -TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred -cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 899999999999999764 346899999999999999999999999999963
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=8.7e-80 Score=613.49 Aligned_cols=334 Identities=36% Similarity=0.664 Sum_probs=298.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-CC-----
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GG----- 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g~----- 72 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||||+.+|+.||+||+.+++++.++ ++
T Consensus 4 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~ 83 (354)
T TIGR02349 4 EILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGF 83 (354)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCc
Confidence 68999999999999999999999999999974 3799999999999999999999999999877642111 11
Q ss_pred ---CCCCCccccccccCCCCCCCCC-CCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eee
Q 015732 73 ---GAHDPFDIFQSFFGGSPFGGSS-RGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMK 147 (401)
Q Consensus 73 ---~~~~~~d~F~~fFgg~~f~g~~-~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~ 147 (401)
++.++.|+|++|||++ ++++. ....++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+
T Consensus 84 ~~~~~~~~~~~f~~~fg~~-~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (354)
T TIGR02349 84 DIGFFGDFGDIFGDFFGGG-GGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKT 162 (354)
T ss_pred cccCcCchhhhHHHHhccC-cccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCcc
Confidence 1123457899999753 11111 12335689999999999999999999999999999999999999998765 478
Q ss_pred ccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcC
Q 015732 148 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 227 (401)
Q Consensus 148 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 227 (401)
|+.|+|+|+++..++++|||+++ +++|+.|.|+|+++. +.|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|+
T Consensus 163 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 239 (354)
T TIGR02349 163 CPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGN 239 (354)
T ss_pred CCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCcc
Confidence 99999999999999999999886 679999999999986 789999999999999999999999999999999999999
Q ss_pred CC-CCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCC
Q 015732 228 EA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 306 (401)
Q Consensus 228 ~~-~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gm 306 (401)
+. .+..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+|||| .+.|.||++ +++|++++|+|+||
T Consensus 240 ~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~ 316 (354)
T TIGR02349 240 AGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKGV 316 (354)
T ss_pred CCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCCc
Confidence 84 467889999999999999999999999999999999999999999999999 589999998 89999999999999
Q ss_pred cCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 307 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 307 p~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
|..+ ...+|||||+|+|.||+.|+++|+++|+++|+
T Consensus 317 p~~~-~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~ 352 (354)
T TIGR02349 317 PRLR-GNGRGDLLVTVKVETPKNLSKEQKELLEELAE 352 (354)
T ss_pred CCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9764 33689999999999999999999999999985
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-79 Score=614.56 Aligned_cols=331 Identities=33% Similarity=0.604 Sum_probs=288.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCCCC--CCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG--GAH 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~--~~~ 75 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||+.||+||++++++++++++ +..
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~~ 87 (373)
T PRK14301 8 EVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAE 87 (373)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCccccc
Confidence 69999999999999999999999999999974 279999999999999999999999999988764211111 111
Q ss_pred ----CCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccC
Q 015732 76 ----DPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 150 (401)
Q Consensus 76 ----~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~ 150 (401)
++.|+|++|||+++. ++++..++++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.
T Consensus 88 ~~~~~f~d~f~~~fg~g~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 166 (373)
T PRK14301 88 DIFSHFSDIFGDLFGFSGG-GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRH 166 (373)
T ss_pred ccccchHHHHHHHhhccCc-ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCC
Confidence 123667777763211 11122334689999999999999999999999999999999999999998765 478999
Q ss_pred CcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC
Q 015732 151 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP 230 (401)
Q Consensus 151 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 230 (401)
|+|+|+++.. . ||+ +++++|+.|+|+|+++. +.|+.|+|+|++.+.+.++|+||+|+++|++|+|+|+|++.+
T Consensus 167 C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 239 (373)
T PRK14301 167 CGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGV 239 (373)
T ss_pred ccCeeEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCC
Confidence 9999987643 3 454 45899999999999986 889999999999999999999999999999999999999855
Q ss_pred -CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCC
Q 015732 231 -DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 309 (401)
Q Consensus 231 -g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~ 309 (401)
+..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..
T Consensus 240 ~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~ 316 (373)
T PRK14301 240 HGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPYL 316 (373)
T ss_pred CCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCCC
Confidence 677999999999999999999999999999999999999999999999998 89999998 89999999999999976
Q ss_pred CCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 310 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 310 ~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 317 ~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 317 G-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred C-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4 346899999999999999999999999999853
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-79 Score=612.67 Aligned_cols=332 Identities=30% Similarity=0.548 Sum_probs=290.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCCC-CCC--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG-GGA-- 74 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g-~~~-- 74 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|+.||+||+++++++..++ +++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~~ 87 (366)
T PRK14294 8 EILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDD 87 (366)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCcccc
Confidence 69999999999999999999999999999984 38999999999999999999999999998876321111 111
Q ss_pred --CCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccCC
Q 015732 75 --HDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGC 151 (401)
Q Consensus 75 --~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C 151 (401)
.++.|+|++|||.+++++++....+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|
T Consensus 88 ~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 167 (366)
T PRK14294 88 IFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQC 167 (366)
T ss_pred chhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCc
Confidence 2344788999972111111111234679999999999999999999999999999999999999998765 4789999
Q ss_pred cccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCC-C
Q 015732 152 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 230 (401)
Q Consensus 152 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~ 230 (401)
+|+|+++.. + ||+ +++++|+.|+|+|+++. +.|+.|+|+|++.+.+.++|.||+|+++|++|+|+|+|++. +
T Consensus 168 ~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~ 240 (366)
T PRK14294 168 GGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVR 240 (366)
T ss_pred CCeEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCC
Confidence 999987643 3 465 47899999999999986 88999999999999999999999999999999999999985 4
Q ss_pred CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCC
Q 015732 231 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 310 (401)
Q Consensus 231 g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 310 (401)
++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.||+| +++|++++|+|+|||..+
T Consensus 241 ~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~~ 317 (366)
T PRK14294 241 GGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSLR 317 (366)
T ss_pred CCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCCC
Confidence 678999999999999999999999999999999999999999999999997 68999998 899999999999999764
Q ss_pred CCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 311 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 311 ~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
...+|||||+|+|.+|+.|+++++++|++|+..
T Consensus 318 -~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 318 -GGGRGDQIIEVEVKVPTRLTKKQEELLTEFARL 350 (366)
T ss_pred -CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999999953
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.1e-79 Score=611.79 Aligned_cols=327 Identities=32% Similarity=0.607 Sum_probs=285.4
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccc----cCccccccCCC-C-C
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQ----YGEDALKEGMG-G-G 71 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~----~g~~~~~~g~~-~-g 71 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||++||+ ||++++..+.+ + +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~ 92 (389)
T PRK14295 13 KVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGG 92 (389)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCC
Confidence 69999999999999999999999999999973 3899999999999999999999999 99887753211 1 0
Q ss_pred CC-CCCCc--------------------cccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeee
Q 015732 72 GG-AHDPF--------------------DIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNV 130 (401)
Q Consensus 72 ~~-~~~~~--------------------d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~ 130 (401)
++ .+++. |+|++||++ +++..++++|.|+.+.|.|||+|+|+|+++++.+++.+
T Consensus 93 ~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~ 167 (389)
T PRK14295 93 GGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA 167 (389)
T ss_pred CCCCcccccccccccccccccccccchhhhhcccccC-----CCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc
Confidence 00 11112 334444432 11123346799999999999999999999999999999
Q ss_pred ecCcccCCCCccCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEE
Q 015732 131 ICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVI 209 (401)
Q Consensus 131 ~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~ 209 (401)
.|++|+|+|...+. ..+|+.|+|+|+++..+ | ++ +++++|+.|+|+|+++. ++|+.|+|+|++.+.++++|.
T Consensus 168 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~ 240 (389)
T PRK14295 168 PCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQVR 240 (389)
T ss_pred cCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecCCCcceeEEec--cCCCCCCCCceEeeeeEEEEE
Confidence 99999999998776 47899999999877654 3 33 46789999999999986 889999999999999999999
Q ss_pred EcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeC
Q 015732 210 VEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQ 288 (401)
Q Consensus 210 Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip 288 (401)
||+|+++|++|+|+|+|++.+ +..+|||||+|.+++|+.|+|+|+||++++.|||++||+|+++.|+||||+.|.|+||
T Consensus 241 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip 320 (389)
T PRK14295 241 IPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLP 320 (389)
T ss_pred eCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEEC
Confidence 999999999999999999854 6778999999999999999999999999999999999999999999999988999999
Q ss_pred CCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 289 PGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 289 ~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+| +++|++++|+|+|||.. ++.+|||||+|+|.||+.|+++|+++|++++..
T Consensus 321 ~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 321 PG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREA 372 (389)
T ss_pred Cc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 98 79999999999999964 346899999999999999999999999999863
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-78 Score=605.52 Aligned_cols=337 Identities=31% Similarity=0.591 Sum_probs=294.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-C-C--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-G-- 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g-~-- 72 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+.++++++++ + +
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~ 86 (365)
T PRK14290 7 KILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNF 86 (365)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcccccc
Confidence 69999999999999999999999999999974 2899999999999999999999999999877532111 0 0
Q ss_pred -CCCCCccccccccCCCC----CCC-CCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCee
Q 015732 73 -GAHDPFDIFQSFFGGSP----FGG-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASM 146 (401)
Q Consensus 73 -~~~~~~d~F~~fFgg~~----f~g-~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~ 146 (401)
+..++.|+|++|||++. +++ ++.++.++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.......
T Consensus 87 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~ 166 (365)
T PRK14290 87 THFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLI 166 (365)
T ss_pred ccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCc
Confidence 11355688999997521 011 111112235889999999999999999999999999999999999999877667
Q ss_pred eccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCc
Q 015732 147 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 226 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G 226 (401)
+|+.|+|+|+++..++.|+ +.++.+++|+.|.|+|+++. ++|+.|+|++++.+.+.++|+||||+.+|++|+|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 243 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKG 243 (365)
T ss_pred cCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEcccc
Confidence 9999999999877775554 44667899999999999976 89999999999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCC
Q 015732 227 DEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 306 (401)
Q Consensus 227 ~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gm 306 (401)
++ +++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||+| +++|++++|+|+||
T Consensus 244 ~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~ 319 (365)
T PRK14290 244 QS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGM 319 (365)
T ss_pred CC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCC
Confidence 96 7889999999999999999999999999999999999999999999999996 89999998 89999999999999
Q ss_pred cCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 015732 307 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 346 (401)
Q Consensus 307 p~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~~~ 346 (401)
|..+ ...+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 320 p~~~-~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 320 PHLN-GHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 9764 33689999999999999999999999999997553
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-78 Score=605.46 Aligned_cols=329 Identities=36% Similarity=0.677 Sum_probs=288.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCC-CCC-C--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GGG-G-- 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~-~g~-~-- 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|+.||+||+.++..+.+ ++. +
T Consensus 8 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~ 87 (371)
T PRK10767 8 EVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCcc
Confidence 69999999999999999999999999999974 279999999999999999999999999987763221 111 1
Q ss_pred -CCC-CccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCe-eeccC
Q 015732 74 -AHD-PFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSG 150 (401)
Q Consensus 74 -~~~-~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~ 150 (401)
+.+ +.|+|++|||+++ +++...+++|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...... .+|+.
T Consensus 88 ~~~~~f~~~f~~~fgg~~---~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~ 164 (371)
T PRK10767 88 GFGDIFGDIFGDIFGGGR---GGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPT 164 (371)
T ss_pred ccccchhhhhhhhccCCc---cccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCC
Confidence 112 2356677775321 11122356899999999999999999999999999999999999999987654 68999
Q ss_pred CcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCC-C
Q 015732 151 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE-A 229 (401)
Q Consensus 151 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~-~ 229 (401)
|+|+|+++..+ ||+ +++++|+.|+|+|+++. ++|+.|+|+|++.+.+.++|.||+|+++|++|+|+|+|++ .
T Consensus 165 C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 237 (371)
T PRK10767 165 CHGAGQVRMQQ----GFF-TVQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE 237 (371)
T ss_pred CCCeeEEEEee----ceE-EEEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence 99999876543 465 47889999999999986 8899999999999999999999999999999999999998 4
Q ss_pred CCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCC
Q 015732 230 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 309 (401)
Q Consensus 230 ~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~ 309 (401)
++..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+|||| .+.|+||+| +++|++++|+|+|||..
T Consensus 238 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p~~ 314 (371)
T PRK10767 238 RGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGKLFRLRGKGVKSV 314 (371)
T ss_pred CCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCCEEEECCCCcCCC
Confidence 567899999999999999999999999999999999999999999999999 489999998 79999999999999976
Q ss_pred CCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 310 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 310 ~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+ ...+|||||+|+|.||+.|+++++++|++++..
T Consensus 315 ~-~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 315 R-SGARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred C-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4 346899999999999999999999999999963
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.8e-78 Score=601.38 Aligned_cols=331 Identities=32% Similarity=0.603 Sum_probs=288.6
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCC--C--CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--G--GGGGA 74 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~--~--~g~~~ 74 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+|+.+|+.||+||++++..+. + ++.++
T Consensus 7 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~ 86 (372)
T PRK14300 7 QILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGG 86 (372)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCc
Confidence 79999999999999999999999999999974 37999999999999999999999999998775321 1 11011
Q ss_pred --CCCccccccccCCCCCCCCC--CC-cccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeec
Q 015732 75 --HDPFDIFQSFFGGSPFGGSS--RG-RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKC 148 (401)
Q Consensus 75 --~~~~d~F~~fFgg~~f~g~~--~~-~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C 148 (401)
.++.++|++||++. |++++ .+ ..+.+|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+|
T Consensus 87 ~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 87 FHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred cccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 12335566666431 22111 11 123578999999999999999999999999999999999999998765 4789
Q ss_pred cCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCC
Q 015732 149 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 228 (401)
Q Consensus 149 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 228 (401)
+.|+|+|+++.. +||++ ++.+|+.|+|+|.++. ++|+.|+|+|++.+.+.++|.||+|+++|++|+|+|+|++
T Consensus 166 ~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~ 238 (372)
T PRK14300 166 DACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA 238 (372)
T ss_pred CCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence 999999987642 25665 7889999999999986 8899999999999999999999999999999999999998
Q ss_pred C-CCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCc
Q 015732 229 A-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMP 307 (401)
Q Consensus 229 ~-~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp 307 (401)
. ++..+|||||+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||
T Consensus 239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p 316 (372)
T PRK14300 239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMS 316 (372)
T ss_pred CCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCC
Confidence 5 5778999999999999999999999999999999999999999999999998899999999 899999999999999
Q ss_pred CCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 308 MYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 308 ~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
..+ ...+|||||+|+|.||++||++|+++|++++.
T Consensus 317 ~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 317 KMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 763 34689999999999999999999999999985
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-77 Score=601.05 Aligned_cols=329 Identities=30% Similarity=0.572 Sum_probs=289.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCCCC-CCC--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG-GAH-- 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~-~~~-- 75 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||++||+||++++.+....+. ...
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (378)
T PRK14283 9 EVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNINF 88 (378)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccCc
Confidence 69999999999999999999999999999974 389999999999999999999999999887652110000 000
Q ss_pred ---------CCccccccc-cCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-
Q 015732 76 ---------DPFDIFQSF-FGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA- 144 (401)
Q Consensus 76 ---------~~~d~F~~f-Fgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~- 144 (401)
++.++|+.| |++ + +...++++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus 89 ~~~~~~~~~~~~~~f~~~~fgg-----~-~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 162 (378)
T PRK14283 89 EDIFQGFGFGIGNIFDMFGFGG-----G-SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSE 162 (378)
T ss_pred cccccccccchhhhccccccCC-----C-CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCC
Confidence 122344444 332 1 12234578999999999999999999999999999999999999988765
Q ss_pred eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccC
Q 015732 145 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 224 (401)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g 224 (401)
..+|+.|+|+|++...+++++|+++ .+.+|+.|+|+|..+. +.|..|+|+|++.+.+.++|.||+|+++|++|+|+|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g 239 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMM-NVTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSG 239 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEE-EEEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEec
Confidence 4689999999999999999999876 4579999999999975 889999999999999999999999999999999999
Q ss_pred CcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecC
Q 015732 225 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 303 (401)
Q Consensus 225 ~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g 303 (401)
+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||| .|.|.||+| +++|++++|+|
T Consensus 240 ~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri~g 316 (378)
T PRK14283 240 EGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRLKG 316 (378)
T ss_pred cccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEECC
Confidence 999854 57899999999999999999999999999999999999999999999999 589999998 79999999999
Q ss_pred CCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 304 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 304 ~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
+|||... ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 317 ~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~ 355 (378)
T PRK14283 317 HGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREFAS 355 (378)
T ss_pred CCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 9999763 34689999999999999999999999999985
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-77 Score=601.05 Aligned_cols=333 Identities=33% Similarity=0.633 Sum_probs=286.9
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCC--CC-CC--
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GG-GG-- 73 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~--~g-~~-- 73 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||+.++..+.+ ++ .+
T Consensus 7 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~ 86 (382)
T PRK14291 7 EILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFS 86 (382)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccc
Confidence 68999999999999999999999999999975 389999999999999999999999999987653211 01 01
Q ss_pred ---CCCCcccccccc---CCC-CCCCC----CC---CcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCC
Q 015732 74 ---AHDPFDIFQSFF---GGS-PFGGS----SR---GRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKG 139 (401)
Q Consensus 74 ---~~~~~d~F~~fF---gg~-~f~g~----~~---~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G 139 (401)
+.++.|+|++|| |.+ .|++. ++ ...+.++.|+.+.|.|||+|+|+|+++++.+++.+.|..|+|+|
T Consensus 87 ~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G 166 (382)
T PRK14291 87 DFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTG 166 (382)
T ss_pred cccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCcccc
Confidence 123446777774 211 12210 11 12245789999999999999999999999999999999999999
Q ss_pred CccCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCC
Q 015732 140 SKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQ 218 (401)
Q Consensus 140 ~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 218 (401)
...+. ..+|+.|+|+|+++.. . ++++++++|+.|+|+|. + ++.|+.|+|.|++.+.++++|+||||+.+|+
T Consensus 167 ~~~~~~~~~C~~C~G~G~~~~~--~---g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 167 YDPGSGEKVCPTCGGSGEIYQR--G---GFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCCCCCCccCCCCCCceEEEEe--c---ceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 98765 4789999999987654 1 34677899999999995 4 4889999999999999999999999999999
Q ss_pred EEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCc
Q 015732 219 KITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQ 297 (401)
Q Consensus 219 ~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~ 297 (401)
+|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|+
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~ 316 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGD 316 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCC
Confidence 999999999855 789999999999999999999999999999999999999999999999999899999999 89999
Q ss_pred EEEecCCCCcCCCCCCCCCCEEEEEEEeCCC--CCC------HHHHHHHHhhCCCC
Q 015732 298 FKAINDEGMPMYQRPFMRGKLYIHFTVDFPE--SLS------PDQCKMLETVLPPR 345 (401)
Q Consensus 298 ~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~--~l~------~~~~~~l~~~lp~~ 345 (401)
+++|+|+|||..+ ...+|||||+|+|.||+ .|+ ++++++|++|+...
T Consensus 317 ~i~i~G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 317 KIRVPGKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred EEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 9999999999764 34689999999999998 499 99999998887543
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-77 Score=598.22 Aligned_cols=334 Identities=32% Similarity=0.645 Sum_probs=296.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCCC---CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---GGGAH 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~---g~~~~ 75 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|+.||+||+++..+..++ ++.++
T Consensus 6 ~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~ 85 (371)
T PRK14292 6 ELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGF 85 (371)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCC
Confidence 68999999999999999999999999999985 3899999999999999999999999998764221111 11124
Q ss_pred CCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC--eeeccCCcc
Q 015732 76 DPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCSGCQG 153 (401)
Q Consensus 76 ~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~--~~~C~~C~G 153 (401)
++.|+|++|||+++++++....++.+|.|+.+.+.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|+|
T Consensus 86 d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G 165 (371)
T PRK14292 86 DPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRG 165 (371)
T ss_pred ChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCC
Confidence 566899999986422211111234679999999999999999999999999999999999999987654 478999999
Q ss_pred cceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCC
Q 015732 154 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 233 (401)
Q Consensus 154 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~ 233 (401)
+|++...+++.+|++++ +++|+.|+|+|..+. ..|+.|+|+|++.+.+.++|.||+|+++|++|+|+|+|++.+++.
T Consensus 166 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~ 242 (371)
T PRK14292 166 AGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN 242 (371)
T ss_pred ccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC
Confidence 99999888888888864 789999999999986 899999999999999999999999999999999999999977666
Q ss_pred cccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCC
Q 015732 234 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 313 (401)
Q Consensus 234 ~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 313 (401)
|||||+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+. .|+||+| +++|++++|+|+|||..+ ..
T Consensus 243 -GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~~-~~ 317 (371)
T PRK14292 243 -GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRLQ-GA 317 (371)
T ss_pred -CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCCC-CC
Confidence 999999999999999999999999999999999999999999999984 7999999 799999999999999764 34
Q ss_pred CCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 314 MRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 314 ~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
.+|||||+|+|.||+.|+++|+++|++++.
T Consensus 318 ~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 318 GTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999999984
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-77 Score=597.55 Aligned_cols=337 Identities=32% Similarity=0.607 Sum_probs=297.4
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCCC-CC-CCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG-GGAHD 76 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~-~g-~~~~~ 76 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+.++.++.+ ++ ++..+
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~~ 86 (374)
T PRK14293 7 EILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGG 86 (374)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcccccc
Confidence 69999999999999999999999999999975 389999999999999999999999999987753211 01 11122
Q ss_pred CccccccccCCC-CCCC-C--CCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCC-eeeccCC
Q 015732 77 PFDIFQSFFGGS-PFGG-S--SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGC 151 (401)
Q Consensus 77 ~~d~F~~fFgg~-~f~g-~--~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C 151 (401)
+.|+|++||++. ++++ + .+..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|..|+|+|..... ..+|+.|
T Consensus 87 ~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 166 (374)
T PRK14293 87 FADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166 (374)
T ss_pred hHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCC
Confidence 347899999641 1111 0 112234578999999999999999999999999999999999999998765 4689999
Q ss_pred cccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCC-C
Q 015732 152 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 230 (401)
Q Consensus 152 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~ 230 (401)
+|+|+++..++++||++++ +++|+.|.|+|+++. +.|++|+|++++.+.+.++|.||||+++|++|+|+|+|++. +
T Consensus 167 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~ 243 (374)
T PRK14293 167 GGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLR 243 (374)
T ss_pred CCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCC
Confidence 9999999999999998876 689999999999986 88999999999999999999999999999999999999985 4
Q ss_pred CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCC
Q 015732 231 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 310 (401)
Q Consensus 231 g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 310 (401)
+..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 244 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 244 GGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCCC
Confidence 667899999999999999999999999999999999999999999999997 78999998 899999999999999865
Q ss_pred CCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 311 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 311 ~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
..+.+|||||+|+|.||+.|+++++++|+++|..
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456899999999999999999999999999964
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-76 Score=593.76 Aligned_cols=336 Identities=33% Similarity=0.650 Sum_probs=293.2
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccccccCCCC-C--CCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G--GGA 74 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~-g--~~~ 74 (401)
++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|++||+||+.+++++.+. + +++
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14289 9 EVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEG 88 (386)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 68999999999999999999999999999974 3799999999999999999999999999877632111 1 111
Q ss_pred CCCcccccc---ccCCC--CCC-----C-CCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccC
Q 015732 75 HDPFDIFQS---FFGGS--PFG-----G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 143 (401)
Q Consensus 75 ~~~~d~F~~---fFgg~--~f~-----g-~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~ 143 (401)
+++.++|+. +|++. +++ + +.....+.+|.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|....
T Consensus 89 ~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 168 (386)
T PRK14289 89 MSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGN 168 (386)
T ss_pred cChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCC
Confidence 233344433 35431 110 0 111123457899999999999999999999999999999999999999866
Q ss_pred C-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEec
Q 015732 144 A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 222 (401)
Q Consensus 144 ~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 222 (401)
. ..+|+.|+|+|+++..+++++|++++ +.+|+.|+|+|.++. ..|+.|+|+|++.+.++++|+||+|+++|++|+|
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l 245 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSM 245 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEE
Confidence 5 47899999999999999999999864 899999999999986 8899999999999999999999999999999999
Q ss_pred cCCcCCC-CCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEe
Q 015732 223 PGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAI 301 (401)
Q Consensus 223 ~g~G~~~-~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i 301 (401)
+|+|++. ++..+|||+|+|++++|+.|+|+++||++++.|||.+||+|+++.|+||||+ +.|.||+| +++|++++|
T Consensus 246 ~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri 322 (386)
T PRK14289 246 NGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRL 322 (386)
T ss_pred eccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEE
Confidence 9999985 4778999999999999999999999999999999999999999999999997 89999998 799999999
Q ss_pred cCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 302 NDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 302 ~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 323 ~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 323 RNKGLPSVN-GYGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCCcCCCC-CCCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999754 346899999999999999999999999999964
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-60 Score=459.54 Aligned_cols=257 Identities=37% Similarity=0.628 Sum_probs=219.2
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCccccccCC-----C-CC-
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-----G-GG- 71 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~-----~-~g- 71 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||+.||+||++++..+. + ++
T Consensus 8 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (291)
T PRK14299 8 AILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGG 87 (291)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCC
Confidence 68999999999999999999999999999975 38999999999999999999999999987543211 0 01
Q ss_pred CC-----CCCCccccccccCCC-CCCCC-----CCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCC
Q 015732 72 GG-----AHDPFDIFQSFFGGS-PFGGS-----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGS 140 (401)
Q Consensus 72 ~~-----~~~~~d~F~~fFgg~-~f~g~-----~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~ 140 (401)
++ ..++.|+|++|||++ ++++. .....+++|.|+.+.+.|||+|+|+|+++++.+.
T Consensus 88 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------------- 154 (291)
T PRK14299 88 GDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------------- 154 (291)
T ss_pred CCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------------
Confidence 11 123447899999752 11110 0012346799999999999999999998877431
Q ss_pred ccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEE
Q 015732 141 KSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 220 (401)
Q Consensus 141 ~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 220 (401)
.+.++|+||+|+++|++|
T Consensus 155 --------------------------------------------------------------g~~~~V~Ip~G~~~G~~i 172 (291)
T PRK14299 155 --------------------------------------------------------------GERLSVRIPPGVREGQVI 172 (291)
T ss_pred --------------------------------------------------------------CEEEEEecCCCcCCCcEE
Confidence 145889999999999999
Q ss_pred eccCCcCCCCCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEE
Q 015732 221 TFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 300 (401)
Q Consensus 221 ~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~ 300 (401)
+|+|+|++. |||+|+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||++ +++|++++
T Consensus 173 r~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~r 244 (291)
T PRK14299 173 RLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLR 244 (291)
T ss_pred EECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEE
Confidence 999999863 99999999999999999999999999999999999999999999997 88999988 89999999
Q ss_pred ecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 301 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 301 i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
|+|+|||.. ++.+|||||+|+|.||+.|+++++++|++++.
T Consensus 245 l~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 245 LKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred ECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999963 35689999999999999999999999999874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=3.1e-58 Score=449.54 Aligned_cols=274 Identities=29% Similarity=0.440 Sum_probs=227.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCcc----ccccCC--CCC-
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGED----ALKEGM--GGG- 71 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~----~~~~g~--~~g- 71 (401)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.||+.||+||.. ++.... +++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (306)
T PRK10266 8 AIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQ 87 (306)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCC
Confidence 58999999999999999999999999999974 38999999999999999999999999854 222110 011
Q ss_pred -CCCCCCccccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccC
Q 015732 72 -GGAHDPFDIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSG 150 (401)
Q Consensus 72 -~~~~~~~d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~ 150 (401)
....++.++|+.|||++ ++.+.+..+++|.|+.+.+.|||+|+|+|+++.+.+++.+.
T Consensus 88 ~~~~~~~~~~f~~~~g~~--~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~------------------- 146 (306)
T PRK10266 88 SFNAEDFDDIFSSIFGQH--ARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVY------------------- 146 (306)
T ss_pred CCCCCCHHHHHHHHhCCC--CCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecccc-------------------
Confidence 11124457888888742 11111223457899999999999999999999998876422
Q ss_pred CcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCC
Q 015732 151 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP 230 (401)
Q Consensus 151 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 230 (401)
.|.|.. ++ ...+.++|.||+|+++|++|+|+|+|++.+
T Consensus 147 -~g~G~~-----------~~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~ 184 (306)
T PRK10266 147 -NAFGMI-----------EQ------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPGE 184 (306)
T ss_pred -cCCCeE-----------EE------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCCC
Confidence 222211 00 123679999999999999999999999854
Q ss_pred -CCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCC
Q 015732 231 -DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 309 (401)
Q Consensus 231 -g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~ 309 (401)
+..+|||+|+|++++|+.|+|+|+||++++.|||++||+|+++.|+|+||+ +.|+||+| +++|++++|+|+|||..
T Consensus 185 ~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~~ 261 (306)
T PRK10266 185 NGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVSK 261 (306)
T ss_pred CCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCCC
Confidence 567899999999999999999999999999999999999999999999998 89999998 79999999999999964
Q ss_pred CCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015732 310 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 344 (401)
Q Consensus 310 ~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp~ 344 (401)
+.+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 262 ---~~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 262 ---KQTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred ---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 25899999999999999999999999999864
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-48 Score=368.73 Aligned_cols=300 Identities=40% Similarity=0.675 Sum_probs=241.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHhCCccccccccccCccccccCC--CCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGGGGAH 75 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~----~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~--~~g~~~~ 75 (401)
+||||+++||..|||+||||||+||||||||+. ++|++|+.||||||||+||+.||+||++++.... +.++++.
T Consensus 20 elLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~~ 99 (336)
T KOG0713|consen 20 ELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGGG 99 (336)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCcc
Confidence 689999999999999999999999999999962 8999999999999999999999999999997431 1111111
Q ss_pred CCccccccccCCCCC--CCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcc
Q 015732 76 DPFDIFQSFFGGSPF--GGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQG 153 (401)
Q Consensus 76 ~~~d~F~~fFgg~~f--~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 153 (401)
.++|+.||+.-++ ++........+|.++...+..+++++|.+........+.+.|. |.|+- .-.|.
T Consensus 100 --~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~~-----~~~~~---- 167 (336)
T KOG0713|consen 100 --NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGTR-----KCNCR---- 167 (336)
T ss_pred --cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCccc-----ccCCh----
Confidence 4678888764222 2222223356899999999999999999987777666655543 11110 01111
Q ss_pred cceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCC
Q 015732 154 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 233 (401)
Q Consensus 154 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~ 233 (401)
..+..++.+||+++.++ ...|..|.+.+...+...+++.+..|+..+....+..+|.+..-+.
T Consensus 168 --~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 230 (336)
T KOG0713|consen 168 --LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGV 230 (336)
T ss_pred --hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecc
Confidence 22344566666665554 2567777888899999999999999999999999999999888889
Q ss_pred cccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCC
Q 015732 234 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 313 (401)
Q Consensus 234 ~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 313 (401)
+||+++.+...+|+.|.|+++||++++.|++.++|.|+...+.|+|+..+.++.. .+..|+..++..++|||..++..
T Consensus 231 ~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~~~~l~~~~ 308 (336)
T KOG0713|consen 231 PGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEGMPLLKNRN 308 (336)
T ss_pred cCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhccchhhhccc
Confidence 9999999999999999999999999999999999999999999999987666543 34689999999999999877777
Q ss_pred CCCCEEEEEEEeCCCC-CCH
Q 015732 314 MRGKLYIHFTVDFPES-LSP 332 (401)
Q Consensus 314 ~~GdL~v~~~V~~P~~-l~~ 332 (401)
..|++|+.|.+.||.+ ++.
T Consensus 309 ~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 309 EKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhcceeEEecccCcccccch
Confidence 8999999999999966 555
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1e-41 Score=352.15 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=136.7
Q ss_pred eEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceE
Q 015732 105 VIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 184 (401)
Q Consensus 105 i~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 184 (401)
+...+.|+|+++|+|+++++.+.|.+.| |.|
T Consensus 659 I~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G--------------------------------------------- 689 (871)
T TIGR03835 659 LVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT--------------------------------------------- 689 (871)
T ss_pred eEEecccCHHHHhCCCeEEEEEEEeecc----CCC---------------------------------------------
Confidence 5556678999999999999998877653 111
Q ss_pred EcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCCcceecCcceeeeccCCH
Q 015732 185 INDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSL 264 (401)
Q Consensus 185 ~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l 264 (401)
...+.+.+.++|+||+|+++|++|+|+|+|++.+++. |||||+|++++|+.|+|+|+|||+++.|+|
T Consensus 690 ------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL 756 (871)
T TIGR03835 690 ------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDP 756 (871)
T ss_pred ------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCH
Confidence 1134567899999999999999999999999877664 999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEe-CCCC
Q 015732 265 TEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD-FPES 329 (401)
Q Consensus 265 ~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~-~P~~ 329 (401)
.+||+|+++.|+||||+ +.|+||+| ++||++++|+|+|||.. ++.+|||||+|.|. ++++
T Consensus 757 ~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 757 LVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred HHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEeecccc
Confidence 99999999999999997 88999988 89999999999999953 34689999999986 3443
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=318.67 Aligned_cols=238 Identities=31% Similarity=0.628 Sum_probs=205.4
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCCc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 78 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~---~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~~ 78 (401)
+||||+++||+.|||+||++||++||||.|.++ ++|++|.+|||||+|++||+.||+++..+.. +...+++
T Consensus 47 ~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~g~~~ 120 (288)
T KOG0715|consen 47 KVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFGGNPF 120 (288)
T ss_pred hhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------cccCCcc
Confidence 689999999999999999999999999999863 8999999999999999999999999986511 1223678
Q ss_pred cccccccCCCCCCCCCCCcccccCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccCCe-eeccCCcccceE
Q 015732 79 DIFQSFFGGSPFGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMK 157 (401)
Q Consensus 79 d~F~~fFgg~~f~g~~~~~~~~~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~ 157 (401)
++|..+|++. ......+.++...+.++|+++..|..+.+.+.....|.+|.|.|...+.. ..|..|.|+|..
T Consensus 121 ~~~~~~~~~~-------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 193 (288)
T KOG0715|consen 121 DVFLEFFGGK-------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLV 193 (288)
T ss_pred chHHHhhccc-------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcccc
Confidence 8899888751 11123456778889999999999999999999999999999999877764 689999999965
Q ss_pred EEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCCcccE
Q 015732 158 VSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDI 237 (401)
Q Consensus 158 ~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDl 237 (401)
.......+. .. +|..|.|.|.++. +.|..|.|.+.+...+.+.|.||+|..++.+|++.+.+.. ||
T Consensus 194 ~~~~~~~f~----~~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~l 259 (288)
T KOG0715|consen 194 SNPKEDPFI----LY-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------DL 259 (288)
T ss_pred cccccCCcc----ee-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------eE
Confidence 544443332 12 8999999999987 4499999999999999999999999999999999999874 99
Q ss_pred EEEEEEeeCCcceecCcceeeeccCCHHH
Q 015732 238 VFVLQQKEHPKFKRKGDDLFVEHTLSLTE 266 (401)
Q Consensus 238 iv~i~~~~h~~f~R~g~dL~~~~~I~l~e 266 (401)
+|.|.|.+++.|+|+|.|+++++.|++.+
T Consensus 260 ~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 260 FVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEEEEeccCcccccccCcccccccccccC
Confidence 99999999999999999999999998753
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.2e-25 Score=213.05 Aligned_cols=244 Identities=45% Similarity=0.729 Sum_probs=181.4
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCCccccccccccCccccccCCC-CC---C
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG---G 72 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-----~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~-~g---~ 72 (401)
+||+|.++|+.+||++|||+||++||||+|+.+ ++|++|++||+||+|+.+|.+||+||++++.+... .+ .
T Consensus 7 ~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~~ 86 (306)
T KOG0714|consen 7 KILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFTS 86 (306)
T ss_pred HHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCCC
Confidence 689999999999999999999999999998753 57999999999999999999999999876664211 00 0
Q ss_pred -----CCCCCccccccccCCC-CCCCC--------------------------CC-----------CcccccCcceEEeE
Q 015732 73 -----GAHDPFDIFQSFFGGS-PFGGS--------------------------SR-----------GRRQRRGEDVIHPL 109 (401)
Q Consensus 73 -----~~~~~~d~F~~fFgg~-~f~g~--------------------------~~-----------~~~~~~g~di~~~l 109 (401)
...++.++|..|||.. .+... .. ....++...+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (306)
T KOG0714|consen 87 ELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPL 166 (306)
T ss_pred CcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCCc
Confidence 1123345666677621 10000 00 00011112233444
Q ss_pred eeeeeeeecCceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCC
Q 015732 110 KVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 189 (401)
Q Consensus 110 ~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~ 189 (401)
.+++++++.+..+...+.+... .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------~ 189 (306)
T KOG0714|consen 167 RVSLEDLYKGESKKMKISRQSF---------------------------------------------------------T 189 (306)
T ss_pred ceeHHHhccccceeeecccccc---------------------------------------------------------c
Confidence 4466666666666555544322 0
Q ss_pred CCCCcCCccEEEEeEEEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCCcceecCcceeee--ccCCHHHH
Q 015732 190 RCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTEA 267 (401)
Q Consensus 190 ~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~~--~~I~l~eA 267 (401)
..... .......+.+.+.+++..|+.+.+..+|+..++..|-++++.+..++|..|.|.+.+|... ..|++.+|
T Consensus 190 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ 265 (306)
T KOG0714|consen 190 SNGRE----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEA 265 (306)
T ss_pred CCccc----ccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhh
Confidence 00000 1235678899999999999999999999998888999999999999999999999999999 99999999
Q ss_pred hCCcEEEEEecCCcEEEEEeCCC-ccccCCcEEEecCCCCcC
Q 015732 268 LCGFQFVITHLDGRQLLIKSQPG-EVVKPDQFKAINDEGMPM 308 (401)
Q Consensus 268 l~G~~~~i~~ldG~~l~i~ip~g-~vi~~g~~~~i~g~Gmp~ 308 (401)
++|....+++++++.+.+ +.. .++.++...+++++|||.
T Consensus 266 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 266 LLGVTVFVPTLDGRSYSL--SINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred hcCcceeeecccCccccC--cccccccCCCceeeecCCCCCC
Confidence 999999999999986554 444 678999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=7.3e-22 Score=155.86 Aligned_cols=81 Identities=41% Similarity=0.657 Sum_probs=70.2
Q ss_pred ceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHH
Q 015732 255 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 334 (401)
Q Consensus 255 dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~ 334 (401)
|||+++.|||++|++|+++.|+||||+.+.|++|++ +++|+.++|+|+|||...+++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 899999999999999999999999999999999998 899999999999999987766899999999999999999999
Q ss_pred HHH
Q 015732 335 CKM 337 (401)
Q Consensus 335 ~~~ 337 (401)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 864
No 38
>PHA03102 Small T antigen; Reviewed
Probab=99.80 E-value=3.9e-20 Score=161.48 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=71.4
Q ss_pred CceeCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCCc
Q 015732 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 78 (401)
Q Consensus 1 ~~iLgv~~~A--s~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~~ 78 (401)
++||||+++| |.+|||+|||++|++||||+++++++|++|++||++|+|+.+|..||.+|....... ...+.
T Consensus 8 ~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------~~~~~ 81 (153)
T PHA03102 8 MDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------EDVPS 81 (153)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------cccHH
Confidence 5799999999 999999999999999999999999999999999999999999999999997654321 12367
Q ss_pred cccccccCC
Q 015732 79 DIFQSFFGG 87 (401)
Q Consensus 79 d~F~~fFgg 87 (401)
+.|.++||+
T Consensus 82 ~~f~~~fg~ 90 (153)
T PHA03102 82 GYVGATFGD 90 (153)
T ss_pred HHhhhhcCC
Confidence 788888875
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.3e-20 Score=171.00 Aligned_cols=64 Identities=58% Similarity=0.968 Sum_probs=60.6
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHHHhCCccccccccccCccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-~---~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~ 65 (401)
+|||++++|+.++||||||+||++||||++++ + +||++||+||+|||||.||.+||.||+.++.
T Consensus 35 dVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 35 DVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred HHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 68999999999999999999999999999987 3 8999999999999999999999999988765
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=2.1e-19 Score=190.97 Aligned_cols=65 Identities=29% Similarity=0.512 Sum_probs=61.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCccccccccccCcccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~ 66 (401)
+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+|||||.+|+.||+||..++..
T Consensus 577 dILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 68999999999999999999999999999985 379999999999999999999999999987653
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5e-19 Score=174.45 Aligned_cols=67 Identities=54% Similarity=0.901 Sum_probs=62.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCCccccccccccCccccc-cCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK-EGM 68 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-------~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~-~g~ 68 (401)
.+|+|+++||.+|||+|||++++-|||||.-|+ ++|+.|.+||||||||.+|++||.||+.|++ +|.
T Consensus 13 a~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gw 87 (546)
T KOG0718|consen 13 ALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGW 87 (546)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCc
Confidence 379999999999999999999999999998652 7899999999999999999999999999998 443
No 42
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-18 Score=166.74 Aligned_cols=81 Identities=42% Similarity=0.661 Sum_probs=70.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 77 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~----~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~~ 77 (401)
+||||+.+||.+||+||||++|++|||||||+. ++|+++++||+||+|+.+|+.||.++..+...- +..++
T Consensus 9 ~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----~~~d~ 83 (296)
T KOG0691|consen 9 DLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----GREDQ 83 (296)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----hhhhH
Confidence 689999999999999999999999999999962 899999999999999999999999998765421 23566
Q ss_pred ccccccccCC
Q 015732 78 FDIFQSFFGG 87 (401)
Q Consensus 78 ~d~F~~fFgg 87 (401)
.++|.+.|++
T Consensus 84 ~~~~r~~f~~ 93 (296)
T KOG0691|consen 84 ADGFRKKFGS 93 (296)
T ss_pred HHHHHHHhhh
Confidence 7888888875
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.7e-18 Score=167.62 Aligned_cols=65 Identities=42% Similarity=0.707 Sum_probs=60.1
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCCccccccccccCcccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-----~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~ 66 (401)
+||||.++|++.|||+|||||||+|||||||+. ++|+.|+.||+|||||..|+-||.+-+.-|.+
T Consensus 12 E~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 12 EVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred HHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 689999999999999999999999999999972 79999999999999999999999987766553
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-16 Score=147.24 Aligned_cols=59 Identities=54% Similarity=0.888 Sum_probs=55.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHhCCccccccccccC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYDQYG 60 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-~----~kFk~I~~AYevLsd~~kR~~YD~~g 60 (401)
+||||+++||..|||+|||+||++||||+|+. + ++|++|++||+||+|+.+|+.||.++
T Consensus 10 ~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 10 EILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 68999999999999999999999999999984 2 89999999999999999999999973
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-17 Score=149.46 Aligned_cols=61 Identities=41% Similarity=0.746 Sum_probs=56.9
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHhCCccccccccccCcc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP------EKFKELAQAYEVLSDPEKREIYDQYGED 62 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~------~kFk~I~~AYevLsd~~kR~~YD~~g~~ 62 (401)
+||||.++||+.|||+||||||++||||+++.+ ++|+.++.||+||||.++|++||+.|.-
T Consensus 18 evLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 18 EVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred HHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 589999999999999999999999999999742 7999999999999999999999998853
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=9.6e-17 Score=153.87 Aligned_cols=63 Identities=51% Similarity=0.751 Sum_probs=57.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCCccccccccccCccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-------~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~ 65 (401)
+||||.++|+..||-|||||||.|||||.-.|+ .||-.|..|-||||||+||+.||. |++.++
T Consensus 398 KILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 398 KILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 589999999999999999999999999987763 589999999999999999999998 666665
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.66 E-value=4.1e-17 Score=122.70 Aligned_cols=56 Identities=45% Similarity=0.771 Sum_probs=53.1
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHhCCcccccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYD 57 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-~----~kFk~I~~AYevLsd~~kR~~YD 57 (401)
+||||+++||.++||+||++|+++||||+++. . +.|+.|++||++|+||.+|+.||
T Consensus 4 ~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 4 EILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999764 3 79999999999999999999998
No 48
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.6e-14 Score=142.25 Aligned_cols=146 Identities=19% Similarity=0.332 Sum_probs=98.3
Q ss_pred cCcceEEeEeeeeeeeecCceeeeeeeeeeecCcccCCCCccC--------CeeeccCCcccceEEEEEecCCcceeEeE
Q 015732 101 RGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG--------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQ 172 (401)
Q Consensus 101 ~g~di~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~--------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~ 172 (401)
.|....+.+.-......+..+-.-.-+...+|++|+|+|.... ..++|+.|+|+|.+ +.
T Consensus 131 ~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~-------------i~ 197 (371)
T COG0484 131 FGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKI-------------IK 197 (371)
T ss_pred cCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeE-------------CC
Confidence 4555444444444444444443334446789999999996422 12689999999964 36
Q ss_pred eeCCCCCCcceEEcCC-----CCCCCcCCc--------------------------------------------------
Q 015732 173 HPCNECKGTGETINDK-----DRCPQCKGE-------------------------------------------------- 197 (401)
Q Consensus 173 ~~C~~C~G~G~~~~~~-----~~C~~C~G~-------------------------------------------------- 197 (401)
.+|+.|+|.|.+...+ -+--...|.
T Consensus 198 ~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~A 277 (371)
T COG0484 198 DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEA 277 (371)
T ss_pred CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHH
Confidence 7999999998853311 011111111
Q ss_pred ------cEEEEeEEEEEEEcCCCcCCCEEeccCCcCCC-CCCCcccEEEEEEEeeCCcceecCcceeee
Q 015732 198 ------KVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVE 259 (401)
Q Consensus 198 ------g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDliv~i~~~~h~~f~R~g~dL~~~ 259 (401)
-+.+....++|+||+|+++|++++|+|+|.+. .+...|||||.|.|.-+..+......|+-+
T Consensus 278 alG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 278 ALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred hcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 11112235899999999999999999999984 556679999999999998877776665544
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-15 Score=136.44 Aligned_cols=63 Identities=38% Similarity=0.644 Sum_probs=58.6
Q ss_pred CceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCCccccccccccCccc
Q 015732 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (401)
Q Consensus 1 ~~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~ 63 (401)
.+||||+++||++|||||||+|.+||||||+|+ ++.|..|+.||+.|+|++.|+.|..||+..
T Consensus 102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 479999999999999999999999999999865 578999999999999999999999999753
No 50
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.56 E-value=8.8e-15 Score=110.78 Aligned_cols=65 Identities=43% Similarity=0.947 Sum_probs=52.9
Q ss_pred cCcccCCCCccCC-eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCcc
Q 015732 132 CTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 198 (401)
Q Consensus 132 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 198 (401)
|+.|+|+|++.+. ..+|+.|+|+|+++..++ .|+++++++++|+.|+|+|++| ++++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999996554 579999999999999888 6778899999999999999999 779999999986
No 51
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.56 E-value=4.4e-15 Score=109.95 Aligned_cols=52 Identities=58% Similarity=0.846 Sum_probs=48.0
Q ss_pred CceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCCccc
Q 015732 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEK 52 (401)
Q Consensus 1 ~~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-----~~kFk~I~~AYevLsd~~k 52 (401)
.+||||+++||.++||+|||+|+++||||++++ .+.|++|++||++|+||.+
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 369999999999999999999999999999983 3899999999999999864
No 52
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.51 E-value=2.1e-14 Score=104.31 Aligned_cols=49 Identities=55% Similarity=0.807 Sum_probs=45.9
Q ss_pred CceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCC
Q 015732 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSD 49 (401)
Q Consensus 1 ~~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~----~~kFk~I~~AYevLsd 49 (401)
.+||||+++||.++||+|||+|+++||||+++. .+.|++|++||++|+|
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999999999985 4899999999999997
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-14 Score=142.45 Aligned_cols=80 Identities=50% Similarity=0.862 Sum_probs=67.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCCccccccccccCccccccCCCCCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 76 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-----~~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~~g~~~g~~~~~ 76 (401)
.||||+++||..|||+||||+|+.||||+|.. +.+|+++-+||.+||||.||..||. |.. +...+ +++++++
T Consensus 377 kilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~~-~~~a~~d 453 (486)
T KOG0550|consen 377 KILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEVG-SGGAGFD 453 (486)
T ss_pred HHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhhc-CCCcCcC
Confidence 58999999999999999999999999999864 3699999999999999999999998 322 22221 2336789
Q ss_pred Cccccccc
Q 015732 77 PFDIFQSF 84 (401)
Q Consensus 77 ~~d~F~~f 84 (401)
|+++|..|
T Consensus 454 p~~~~~a~ 461 (486)
T KOG0550|consen 454 PFNIFRAF 461 (486)
T ss_pred hhhhhhhc
Confidence 99988877
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=114.30 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=45.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLs 48 (401)
+||||+++||.+|||+|||+|+++||||++++++.|++|++|||+|.
T Consensus 69 ~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 69 KILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999888899999999999995
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.9e-14 Score=128.01 Aligned_cols=58 Identities=38% Similarity=0.661 Sum_probs=54.7
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhCCcccccccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQY 59 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~---~kFk~I~~AYevLsd~~kR~~YD~~ 59 (401)
+||||+++|+.+||+||||+||++||||+|+++ +.|+.|.+|||+|.|.+.|..||-+
T Consensus 37 dVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 37 DVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 689999999999999999999999999999874 6799999999999999999999964
No 56
>PHA02624 large T antigen; Provisional
Probab=99.38 E-value=3.3e-13 Score=139.92 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=54.2
Q ss_pred CceeCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCccccccc
Q 015732 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIY 56 (401)
Q Consensus 1 ~~iLgv~~~A--s~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~kR~~Y 56 (401)
+++|||+++| |.+|||+|||+||++||||+++++++|++|++||++|+|+.+|..|
T Consensus 14 yelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 14 MDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4799999999 9999999999999999999999999999999999999999999998
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=4.6e-13 Score=119.50 Aligned_cols=58 Identities=29% Similarity=0.332 Sum_probs=52.0
Q ss_pred CceeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCCccccccccc
Q 015732 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQ 58 (401)
Q Consensus 1 ~~iLgv~~~--As~~eIKkAYrkla~k~HPDkn~~~-------~kFk~I~~AYevLsd~~kR~~YD~ 58 (401)
+++|||++. ++.++|++|||+|+++||||++.+. +.|..||+||++|+||.+|+.|+.
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 368999997 7899999999999999999998753 347899999999999999999975
No 58
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=5.8e-13 Score=119.53 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=51.8
Q ss_pred CceeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCCccccccccc
Q 015732 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 58 (401)
Q Consensus 1 ~~iLgv~~~--As~~eIKkAYrkla~k~HPDkn~~---------~~kFk~I~~AYevLsd~~kR~~YD~ 58 (401)
+++|||+++ ++.++|+++||+|+++||||+..+ .++|+.||+||++|+||.+|+.|+.
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 478999996 678999999999999999999753 1579999999999999999999984
No 59
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=3.7e-12 Score=128.00 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=50.4
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|+||+|+++|++|+|+|+|.+.+ +..+|||||+|++..|+.|++++.+|+.++
T Consensus 304 ~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 304 TTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred EEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999999854 456899999999999999999999887664
No 60
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=6.6e-12 Score=126.89 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=45.2
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCCcceecCcceee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 258 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~ 258 (401)
.++|+||+|+++|++|+|+|+|.+..+...|||||+|+|.-+..++.....|+-
T Consensus 314 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~ 367 (389)
T PRK14295 314 PVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREALE 367 (389)
T ss_pred EEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 799999999999999999999998666678999999999977766555544443
No 61
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=4.7e-12 Score=127.13 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=50.5
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceeeecc
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 261 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~~~~ 261 (401)
.++|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|++++.+|+.++.
T Consensus 291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999998654 468999999999999999999988887654
No 62
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=4e-12 Score=114.03 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=51.9
Q ss_pred CceeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCCccccccccc
Q 015732 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 58 (401)
Q Consensus 1 ~~iLgv~~~--As~~eIKkAYrkla~k~HPDkn~~---------~~kFk~I~~AYevLsd~~kR~~YD~ 58 (401)
+++|||++. .+..+|++|||+|+++||||++.. .++|+.||+||++|+||.+|+.|+.
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 578999998 567999999999999999999753 1579999999999999999999995
No 63
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=4.1e-12 Score=114.43 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=51.2
Q ss_pred CceeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---h------HHHHHHHHHHHHhCCccccccccc
Q 015732 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---P------EKFKELAQAYEVLSDPEKREIYDQ 58 (401)
Q Consensus 1 ~~iLgv~~~--As~~eIKkAYrkla~k~HPDkn~~---~------~kFk~I~~AYevLsd~~kR~~YD~ 58 (401)
++||||++. ++..+|+++||+|+++||||+++. . +.++.||+||++|+||.+|+.|+.
T Consensus 9 f~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 9 FSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 478999996 678999999999999999999863 1 346899999999999999999985
No 64
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=7.4e-12 Score=125.66 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 204 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
..++|+||+|+++|++|+|+|+|.+.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999999998654 46899999999999999999999998774
No 65
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=9e-12 Score=125.42 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=49.5
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|.||+|+++|++++|+|+|.+.++ ...|||||+|+|..|+.|++++.+|+.++
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998543 45799999999999999999998887665
No 66
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.4e-11 Score=123.61 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=48.7
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCC-CcccEEEEEEEeeCCcceecCcceeee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 259 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~-~~GDliv~i~~~~h~~f~R~g~dL~~~ 259 (401)
.++|+||+|+++|++|+|+|+|++.++. ..|||||+|++..|+.|++++..|+-.
T Consensus 294 ~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999999986554 469999999999999999998766654
No 67
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.1e-11 Score=122.71 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=50.1
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|.||+|+++|++++++|+|.+.+ +...|||||+|+|..|+.|++++.+|+.++
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999854 346799999999999999999998887765
No 68
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.6e-11 Score=122.73 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=44.6
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|+||+|+++|++|+|+|+|.+.++...|||||+|+|.-+..++.+...|+
T Consensus 320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l 372 (392)
T PRK14279 320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEAL 372 (392)
T ss_pred eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999876667899999999998876555544443
No 69
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.7e-11 Score=121.88 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=47.7
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|+||+|+++|++|+|+|+|.+.++ ...|||||+|+|..|+.++.+..+|+..+
T Consensus 291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l 347 (373)
T PRK14301 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREF 347 (373)
T ss_pred cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999998654 45899999999999988887776665543
No 70
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3.9e-11 Score=121.47 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=48.7
Q ss_pred EEEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 204 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
..++|+||+|+++|++|+|+|+|.+.+ +..+|||||+|+|..++.++.+...|+..+
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999999865 356899999999999988888776665443
No 71
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=6.1e-11 Score=119.87 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=42.4
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++++|+|.+..+ ...|||||+|+|.-+..++.+..+|+
T Consensus 306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l 359 (386)
T PRK14277 306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELL 359 (386)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 478999999999999999999997543 45799999999997765555544433
No 72
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-11 Score=122.02 Aligned_cols=58 Identities=43% Similarity=0.543 Sum_probs=54.8
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCCcccccccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQY 59 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYevLsd~~kR~~YD~~ 59 (401)
.+|||++++|+++|||+|||+|+--|||||-. +|-||.+..|||||+|++||+.||.-
T Consensus 239 svlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 239 SALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 58999999999999999999999999999975 48999999999999999999999984
No 73
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=6.1e-11 Score=119.30 Aligned_cols=54 Identities=15% Similarity=0.360 Sum_probs=45.8
Q ss_pred EEEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 204 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
+.++|+||+|+++|++|+|+|+|.+.+ +..+|||||+|+|..+..|+-+...|+
T Consensus 292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 479999999999999999999999865 356899999999999987766654444
No 74
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=3.8e-11 Score=121.42 Aligned_cols=116 Identities=25% Similarity=0.470 Sum_probs=82.7
Q ss_pred eeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcC----------CCCCCCcCCccEEEEeEEEEEEEcCCCc
Q 015732 146 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND----------KDRCPQCKGEKVIQEKKVLEVIVEKGMQ 215 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 215 (401)
..|+.|+|+|.... ....+|+.|+|+|.+... ...|+.|.|.|.+.....
T Consensus 155 ~~C~~C~G~G~~~~----------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C---------- 214 (386)
T PRK14289 155 VPCSHCHGTGAEGN----------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKC---------- 214 (386)
T ss_pred cccCCCCCCCCCCC----------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCC----------
Confidence 57999999985311 123679999999887532 357999998886532211
Q ss_pred CCCEEeccCCcCCCCCCCcccEEEEEEEeeCCcceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccC
Q 015732 216 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 295 (401)
Q Consensus 216 ~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~ 295 (401)
--|++...+.. .+.+.|.||+| +++
T Consensus 215 ---------------------------------------------------~~C~G~g~v~~--~~~~~V~Ip~G--~~~ 239 (386)
T PRK14289 215 ---------------------------------------------------KKCGGEGIVYG--EEVITVKIPAG--VAE 239 (386)
T ss_pred ---------------------------------------------------CCCCCCcEEee--eEEEEEEeCCC--CCC
Confidence 12444444432 23578999999 799
Q ss_pred CcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHH
Q 015732 296 DQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKM 337 (401)
Q Consensus 296 g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~ 337 (401)
|++++|+|+|+|... ...+|||||+|+|..|+.+..+..++
T Consensus 240 G~~i~l~g~G~~~~~-~~~~GDL~v~v~v~~~~~f~r~g~DL 280 (386)
T PRK14289 240 GMQLSMNGKGNAGKH-GGVNGDLLVVIEEEPHPELIRDENDL 280 (386)
T ss_pred CCEEEEeccccCCCC-CCCCccEEEEEEEecCCcccccccce
Confidence 999999999999643 34589999999999999887765444
No 75
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.13 E-value=7.6e-11 Score=117.96 Aligned_cols=54 Identities=13% Similarity=0.296 Sum_probs=47.0
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFV 258 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~ 258 (401)
.++|.||+|+++|++++|+|+|.+.++ ..+|||||+|+|..++.|++++.+++-
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999999998654 468999999999999988888766543
No 76
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=6.9e-11 Score=118.82 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=47.9
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|+||+|+++|++|+|+|+|.+.+ +...|||||+|+|..|+.|+++...|+.++
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999999999854 346799999999999999888876665543
No 77
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.13 E-value=2.3e-11 Score=120.06 Aligned_cols=63 Identities=37% Similarity=0.625 Sum_probs=58.2
Q ss_pred CceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCCccccccccccCccc
Q 015732 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (401)
Q Consensus 1 ~~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---------~~kFk~I~~AYevLsd~~kR~~YD~~g~~~ 63 (401)
.+||||+.++|..+||++||+|.+||||||-+. ++++++|++||+.|+|...|+.|-.||.-.
T Consensus 101 yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 379999999999999999999999999999764 389999999999999999999999998643
No 78
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.4e-10 Score=116.87 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=49.2
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCC--CcccEEEEEEEeeCCcceecCcceeeec
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGDDLFVEH 260 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~--~~GDliv~i~~~~h~~f~R~g~dL~~~~ 260 (401)
.++|.||+|+++|++++++|+|.+.++. ..|||||+|+|..|+.|++++.+|+-++
T Consensus 294 ~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 294 PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999986543 5799999999999999999998877654
No 79
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.9e-10 Score=115.94 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 203 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 203 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
...++|.||+|+++|++++|+|+|.+.+ +...|||||+|+|.-+..++.+...|+
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 344 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELL 344 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 3568999999999999999999999854 446899999999997765555544433
No 80
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.9e-10 Score=115.63 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=45.3
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCC-CcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~-~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|+||+|+++|++++|+|+|.+.++. ..|||||+|+|..|+.|+.+...|+
T Consensus 286 ~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 286 ELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 5899999999999999999999986654 4699999999999988777665444
No 81
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=2.3e-10 Score=115.29 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=43.5
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++|+|+|.+.. +...|||||+|+|..+..++.+...|+
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l 347 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELL 347 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999854 346799999999998776655554444
No 82
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.4e-10 Score=115.32 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.3
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCcceee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFV 258 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~~ 258 (401)
.++|.||+|+++|++|+|+|+|.+.++ ..+|||||+|+|.-+..++.+...|+-
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~ 351 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALK 351 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999999998653 467999999999988766655544443
No 83
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=3e-10 Score=114.31 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=44.2
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++++|+|.+..+ ...|||||+|+|.-+..++.+..+|+
T Consensus 298 ~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 298 KAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred EEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 589999999999999999999998543 45799999999998877666654444
No 84
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=5.1e-10 Score=113.52 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=43.0
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++|+|+|.+.+ +...|||||+|+|.-+..++.+...|+
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 366 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELL 366 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 58999999999999999999999854 346799999999997776555544333
No 85
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.02 E-value=3.2e-10 Score=100.48 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCCcccccccccc
Q 015732 10 ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQY 59 (401)
Q Consensus 10 As~~eIKkAYrkla~k~HPDkn~~---------~~kFk~I~~AYevLsd~~kR~~YD~~ 59 (401)
-+..+|+++||+|+++||||+.+. .+.|+.||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 467899999999999999998542 16899999999999999999999863
No 86
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=5.6e-10 Score=112.68 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++|+|+|.+.. +...|||||+|+|.-+..++.+...|+
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 58999999999999999999999854 346799999999997776555544433
No 87
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=5.6e-10 Score=112.26 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=42.6
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC--CCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~--g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++++|+|+|.+.. ....|||||+|+|.-+..++.+...|+
T Consensus 301 ~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 355 (372)
T PRK14296 301 DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI 355 (372)
T ss_pred CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999732 335799999999997776665554443
No 88
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=1.1e-09 Score=110.32 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=45.8
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCcceee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFV 258 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~~ 258 (401)
..+|.||+|+++|++++|+|+|.+.+ +..+|||||+|+|..++.|+.+...|+-
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999999999854 4568999999999999888877655553
No 89
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=2e-09 Score=108.73 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEEEEEEcCCCcCCCEEeccCCcCCCCC-CCcccEEEEEEEeeCC
Q 015732 204 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 247 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDliv~i~~~~h~ 247 (401)
..++|+||+|+++|++|+|+|+|.+.++ ..+|||||+|+|.-+.
T Consensus 302 ~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 302 KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 3689999999999999999999998653 4689999999998765
No 90
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.91 E-value=1.9e-09 Score=109.79 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=40.0
Q ss_pred EEEEEEcCC--CcCCCEEeccCCcCCCCC--CCcccEEEEEEEeeC--CcceecC
Q 015732 205 VLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH--PKFKRKG 253 (401)
Q Consensus 205 ~l~V~Ip~G--~~~G~~i~~~g~G~~~~g--~~~GDliv~i~~~~h--~~f~R~g 253 (401)
.++|+||+| +++|++++|+|+|.+... ...|||||+|+|.-+ ..++.+.
T Consensus 302 ~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~q 356 (421)
T PTZ00037 302 KLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEE 356 (421)
T ss_pred eEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHH
Confidence 689999999 999999999999998543 357999999999876 5444433
No 91
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.91 E-value=2.8e-09 Score=88.17 Aligned_cols=61 Identities=28% Similarity=0.633 Sum_probs=50.2
Q ss_pred eeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEe
Q 015732 129 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEK 203 (401)
Q Consensus 129 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 203 (401)
.+.|..|+|+|.. +|+.|+|+|++...+ ++ .++.+++|+.|+|+|+. .|+.|+|++++...
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~~ 101 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPRY 101 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEeee
Confidence 4789999999983 899999999886543 43 36788999999999974 49999999987553
No 92
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=3.6e-09 Score=106.76 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=42.9
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCC-CCCcccEEEEEEEeeCCcceecCccee
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 257 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDliv~i~~~~h~~f~R~g~dL~ 257 (401)
.++|.||+|+++|++|+|+|+|.+.+ +...|||||+|++.-+..++.+...|+
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 68999999999999999999999854 346799999999987765555544444
No 93
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=8.1e-09 Score=100.65 Aligned_cols=73 Identities=30% Similarity=0.415 Sum_probs=65.5
Q ss_pred ceecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCC
Q 015732 249 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 328 (401)
Q Consensus 249 f~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~ 328 (401)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|+|||| +++|++++++|+|++. |||||+|+|.-+.
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 457899999999999999999999998 78998899999999 8999999999999962 9999999998666
Q ss_pred CCC
Q 015732 329 SLS 331 (401)
Q Consensus 329 ~l~ 331 (401)
.+.
T Consensus 195 ~f~ 197 (291)
T PRK14299 195 VFR 197 (291)
T ss_pred CeE
Confidence 543
No 94
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.67 E-value=6.2e-08 Score=95.12 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=62.8
Q ss_pred ecCcceeeeccCCHHHHhCCcEEEE----EecC--C-------cEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCC
Q 015732 251 RKGDDLFVEHTLSLTEALCGFQFVI----THLD--G-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGK 317 (401)
Q Consensus 251 R~g~dL~~~~~I~l~eAl~G~~~~i----~~ld--G-------~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~Gd 317 (401)
++|.||++++.|||.||+.|+...| ++++ | +.+.|.||+| +++|++++++|+|||.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5689999999999999999995544 4454 3 4689999999 89999999999999965 3456899
Q ss_pred EEEEEEEeCCCC
Q 015732 318 LYIHFTVDFPES 329 (401)
Q Consensus 318 L~v~~~V~~P~~ 329 (401)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999998 755
No 95
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.66 E-value=2.5e-08 Score=89.61 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=49.7
Q ss_pred CceeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC--h-------HHHHHHHHHHHHhCCcccccccc
Q 015732 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD--P-------EKFKELAQAYEVLSDPEKREIYD 57 (401)
Q Consensus 1 ~~iLgv~~~--As~~eIKkAYrkla~k~HPDkn~~--~-------~kFk~I~~AYevLsd~~kR~~YD 57 (401)
+++||+++. .+..++++.||+|.+++|||+... + +.-..||+||.+|+||-+|+.|=
T Consensus 5 F~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 5 FALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 478999887 889999999999999999999643 1 35678999999999999999984
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-07 Score=101.92 Aligned_cols=47 Identities=32% Similarity=0.522 Sum_probs=39.8
Q ss_pred ceeCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhC
Q 015732 2 RFSESRKN----ASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLS 48 (401)
Q Consensus 2 ~iLgv~~~----As~~eIKkAYrkla~k~HPDkn~~-~~kFk~I~~AYevLs 48 (401)
+||.|+-+ -..+.||++|+|||+||||||||. -++|-.+|+|||.|+
T Consensus 1285 eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1285 EILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 46666633 344789999999999999999996 499999999999998
No 97
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.4e-07 Score=88.24 Aligned_cols=59 Identities=36% Similarity=0.359 Sum_probs=51.4
Q ss_pred eeCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhCCccccccccccCc
Q 015732 3 FSESRK---NASQDDLKKAYRKAAIKNHPDKGG------DPEKFKELAQAYEVLSDPEKREIYDQYGE 61 (401)
Q Consensus 3 iLgv~~---~As~~eIKkAYrkla~k~HPDkn~------~~~kFk~I~~AYevLsd~~kR~~YD~~g~ 61 (401)
+||+++ .|++.+|.+|.++...+||||+.. ..+-|+.|+.|||||+|+.+|..||.-..
T Consensus 48 ~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 48 LLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred HhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 577774 588899999999999999999962 24899999999999999999999998543
No 98
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.46 E-value=1.2e-07 Score=74.66 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCcCCCEEeccCCcCCCC-C-CCcccEEEEEEEeeCCccee
Q 015732 204 KVLEVIVEKGMQNGQKITFPGEADEAP-D-TVTGDIVFVLQQKEHPKFKR 251 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-g-~~~GDliv~i~~~~h~~f~R 251 (401)
+.++|.||+|+++|++++++|+|.+.. + ...|||||++++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 467889999999999999999999743 3 37999999999997766654
No 99
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.43 E-value=3.1e-07 Score=83.00 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=47.1
Q ss_pred EeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEEEcCCCcCCCEEecc
Q 015732 172 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 223 (401)
Q Consensus 172 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 223 (401)
+.+|+.|+|+|+++...++|+.|+|+|.+..++.+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 568999999999998778999999999999999999999 999999999875
No 100
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.1e-07 Score=83.49 Aligned_cols=54 Identities=31% Similarity=0.559 Sum_probs=49.1
Q ss_pred CceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCCccccc
Q 015732 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKRE 54 (401)
Q Consensus 1 ~~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~-----~kFk~I~~AYevLsd~~kR~ 54 (401)
++||.|.|..|.++||+.||+|++--|||||+|. ..|--+..||..|-|+.-|.
T Consensus 56 feVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 56 FEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4799999999999999999999999999999974 56999999999999998554
No 101
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.35 E-value=4.2e-07 Score=87.48 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=29.4
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGG 32 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~ 32 (401)
+||||+++||.+|||+|||+|+++||||++.
T Consensus 204 ~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~ 234 (267)
T PRK09430 204 KVLGVSESDDDQEIKRAYRKLMSEHHPDKLV 234 (267)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCcCCCC
Confidence 6899999999999999999999999999963
No 102
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.7e-06 Score=69.97 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=46.3
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCcc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPE 51 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~ 51 (401)
-||||+++++.+-||.|+||.-...|||+.+++-.-.+||||+++|....
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999999999988888999999997543
No 103
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.6e-06 Score=76.48 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=44.1
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HhCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYE-VLSD 49 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kFk~I~~AYe-vLsd 49 (401)
.||||...|+.+|++.||.+||+++|||-..+ .++|..|.+||. ||+.
T Consensus 51 ril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 51 RILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999764 589999999998 8873
No 104
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3e-05 Score=76.12 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=43.5
Q ss_pred cCCccEEE--EeEEEEEEEcCC--CcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCC
Q 015732 194 CKGEKVIQ--EKKVLEVIVEKG--MQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 247 (401)
Q Consensus 194 C~G~g~~~--~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~ 247 (401)
|.+..++. +...|++.++|| +.+|+++++.|+|.+..+...|||||.+.|+-++
T Consensus 267 ~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 267 CGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred ccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 44444433 346799999999 9999999999999996655599999999998665
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.81 E-value=8.2e-06 Score=83.81 Aligned_cols=27 Identities=33% Similarity=0.849 Sum_probs=15.1
Q ss_pred ecCcccCCCCccCCeeeccCCcccceE
Q 015732 131 ICTKCKGKGSKSGASMKCSGCQGSGMK 157 (401)
Q Consensus 131 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 157 (401)
.|+.|+|+|........|+.|+|+|..
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~ 30 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFS 30 (715)
T ss_pred cccccCCCceEeeeeeecccccccccc
Confidence 466666665554444556666666654
No 106
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.45 E-value=0.00051 Score=73.45 Aligned_cols=64 Identities=41% Similarity=0.729 Sum_probs=59.5
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhCCccccccccccCccccc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~---~kFk~I~~AYevLsd~~kR~~YD~~g~~~~~ 65 (401)
+||||+++|+.++||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+||..+..
T Consensus 6 eVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 6 EVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999998753 6899999999999999999999999986654
No 107
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.41 E-value=8.4e-05 Score=56.08 Aligned_cols=42 Identities=33% Similarity=0.935 Sum_probs=29.1
Q ss_pred eeecCcccCCCCccCC----------eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcc
Q 015732 129 NVICTKCKGKGSKSGA----------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 182 (401)
Q Consensus 129 ~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 182 (401)
...|+.|+|+|..... ..+|+.|+|+|.++ ...+|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 4589999999976321 26899999999642 257899999986
No 108
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0013 Score=68.15 Aligned_cols=69 Identities=29% Similarity=0.722 Sum_probs=46.1
Q ss_pred cCceeeeeeeeeeecCcccCCCCccC------C-------------eeeccCCcccceEEEEEecCCcceeEeEeeCCCC
Q 015732 118 NGTSKKLSLSRNVICTKCKGKGSKSG------A-------------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 178 (401)
Q Consensus 118 ~G~~~~~~~~r~~~C~~C~G~G~~~~------~-------------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C 178 (401)
+|.+.++.+. ...|+.|+|+|.... . ..+|+.|+|.|.+.. ..+|+.|
T Consensus 8 C~g~G~i~v~-~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~~c 74 (715)
T COG1107 8 CGGKGKIVVG-EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCPEC 74 (715)
T ss_pred cCCCceEeee-eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------EeecccC
Confidence 4444444443 356999999996421 0 147999999997643 4689999
Q ss_pred CCcceEEcCC-----------CCCCCcCCccE
Q 015732 179 KGTGETINDK-----------DRCPQCKGEKV 199 (401)
Q Consensus 179 ~G~G~~~~~~-----------~~C~~C~G~g~ 199 (401)
+|+|++.... -.|+.|+-+..
T Consensus 75 ~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 75 GGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCceeEEeeccccceecCcccccChhHhhCCc
Confidence 9999986511 14788865543
No 109
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00048 Score=66.23 Aligned_cols=32 Identities=28% Similarity=0.734 Sum_probs=24.4
Q ss_pred eeCCCCCCcceEEcCCCCCCCcCCccEEEEeEEEEEE
Q 015732 173 HPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVI 209 (401)
Q Consensus 173 ~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~ 209 (401)
.+|++|.|+|. .+|.+|.|.|.......+.|.
T Consensus 246 ~~C~tC~grG~-----k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 246 KECHTCKGRGK-----KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred ccCCcccCCCC-----cccccccCccceeeeEEEEEE
Confidence 46888888885 678888888887777666665
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.46 E-value=0.0021 Score=53.37 Aligned_cols=40 Identities=33% Similarity=0.842 Sum_probs=30.8
Q ss_pred ecCcccCCCCccC----C---eeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEc
Q 015732 131 ICTKCKGKGSKSG----A---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 186 (401)
Q Consensus 131 ~C~~C~G~G~~~~----~---~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 186 (401)
.|+.|+|+|.... . ..+|+.|+|+|. ..|+.|.|+|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 7999999987421 1 257999999994 24999999998754
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0022 Score=61.75 Aligned_cols=25 Identities=32% Similarity=0.769 Sum_probs=19.4
Q ss_pred EeeCCCCCCcceEEcCCCCCCCcCCccEEE
Q 015732 172 QHPCNECKGTGETINDKDRCPQCKGEKVIQ 201 (401)
Q Consensus 172 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 201 (401)
...|..|+|+|. ..|++|+|.|.+.
T Consensus 234 ~~~C~~C~G~G~-----~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 234 HDLCYMCHGRGI-----KECHTCKGRGKKP 258 (406)
T ss_pred cchhhhccCCCc-----ccCCcccCCCCcc
Confidence 456888888885 7899998888643
No 112
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.38 E-value=0.0083 Score=54.47 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=15.8
Q ss_pred eeecCcccCCCCccCCeeeccCCcccceE
Q 015732 129 NVICTKCKGKGSKSGASMKCSGCQGSGMK 157 (401)
Q Consensus 129 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 157 (401)
...|+.|+|+|........|+.|+|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 45566666666543322456666666654
No 113
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.15 E-value=0.026 Score=48.09 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=38.5
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCcc
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPE 51 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~ 51 (401)
.||+|++.++.++|.+.|.+|-...+|++.++.-.=..|..|.|.|..+-
T Consensus 62 ~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 62 QILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999988766677888999886443
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.023 Score=51.18 Aligned_cols=46 Identities=37% Similarity=0.530 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHhCCccccccccc
Q 015732 13 DDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (401)
Q Consensus 13 ~eIKkAYrkla~k~HPDkn~~~---------~kFk~I~~AYevLsd~~kR~~YD~ 58 (401)
+.++..|+.++++||||+...+ +.+..++.||.+|.||-+|+.|=.
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4678899999999999997531 579999999999999999998854
No 115
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.092 Score=45.91 Aligned_cols=47 Identities=40% Similarity=0.602 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC--C-------hHHHHHHHHHHHHhCCcccccccc
Q 015732 11 SQDDLKKAYRKAAIKNHPDKGG--D-------PEKFKELAQAYEVLSDPEKREIYD 57 (401)
Q Consensus 11 s~~eIKkAYrkla~k~HPDkn~--~-------~~kFk~I~~AYevLsd~~kR~~YD 57 (401)
.++-++--|--..++.|||+.. . .+.-.++|+||..|.||-+|+.|=
T Consensus 23 ~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 23 DPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred CcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444677778999999843 2 256889999999999999999984
No 116
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.16 Score=50.39 Aligned_cols=52 Identities=40% Similarity=0.682 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHhCCccccccccccC
Q 015732 9 NASQDDLKKAYRKAAIKNHPDKGG--------DPEKFKELAQAYEVLSDPEKREIYDQYG 60 (401)
Q Consensus 9 ~As~~eIKkAYrkla~k~HPDkn~--------~~~kFk~I~~AYevLsd~~kR~~YD~~g 60 (401)
-++..+|..+|+..++.+||++-. .++-|++|.+||+||++..+|..+|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 367889999999999999999863 2478999999999999977777777654
No 117
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=0.092 Score=47.30 Aligned_cols=47 Identities=34% Similarity=0.429 Sum_probs=38.2
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLS 48 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~-~~kFk~I~~AYevLs 48 (401)
.+|+|...++..+|+++||++..++|||+-.. ..+-+-+..|-+.+.
T Consensus 117 ~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~ 164 (174)
T COG1076 117 KVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ 164 (174)
T ss_pred HHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHH
Confidence 58999999999999999999999999998643 255666666666554
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.43 E-value=0.55 Score=43.10 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 015732 7 RKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (401)
Q Consensus 7 ~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLs 48 (401)
+++||.+||.+|+.+|-.+| ..|++.-.+|-.||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 68999999999999999998 445677888999998553
No 119
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.34 Score=47.30 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.2
Q ss_pred EEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCC
Q 015732 283 LLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS 331 (401)
Q Consensus 283 l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~ 331 (401)
+.|.+|+| +..+.++++++.|-- +|+|.+.|.--..+.
T Consensus 235 i~i~~~~g--~~~~~~l~~~~~~~~---------~l~v~~~v~~~~~~~ 272 (288)
T KOG0715|consen 235 IMIVLPAG--VRSADTLRFAGHGND---------DLFVRLIVAKSPSFR 272 (288)
T ss_pred EEeecCcc--cccccEEEEecCCcc---------eEEEEEEeccCcccc
Confidence 66788988 688999999987632 999999987544343
No 120
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.75 E-value=0.36 Score=42.31 Aligned_cols=22 Identities=36% Similarity=0.848 Sum_probs=10.9
Q ss_pred ecCcccCCCCccCCeeeccCCcccceE
Q 015732 131 ICTKCKGKGSKSGASMKCSGCQGSGMK 157 (401)
Q Consensus 131 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 157 (401)
.|..|.|.+. .+|..|+|+=.+
T Consensus 101 ~C~~Cgg~rf-----v~C~~C~Gs~k~ 122 (147)
T cd03031 101 VCEGCGGARF-----VPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCcCe-----EECCCCCCcceE
Confidence 3555555543 345555555443
No 121
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=88.37 E-value=0.27 Score=50.99 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC
Q 015732 10 ASQDDLKKAYRKAAIKNHPDKGGD 33 (401)
Q Consensus 10 As~~eIKkAYrkla~k~HPDkn~~ 33 (401)
.+.++|||||||..+.-||||-+.
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccC
Confidence 478999999999999999999753
No 122
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=0.45 Score=45.52 Aligned_cols=51 Identities=31% Similarity=0.649 Sum_probs=30.7
Q ss_pred eecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcC
Q 015732 130 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 195 (401)
Q Consensus 130 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 195 (401)
-.|..|.|.+. ..|..|+|+=.+...-.-. -.-..|..|+-.|- -+|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~~~~~-----~~~~rC~~CNENGL-----vrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEEEEDD-----GGVLRCLECNENGL-----VRCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeeeccCC-----CcEEECcccCCCCc-----eeCCccC
Confidence 45777766654 4688888876554310011 12357888888875 3677774
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=1.8 Score=41.56 Aligned_cols=40 Identities=25% Similarity=0.794 Sum_probs=31.5
Q ss_pred eeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEc--CC----CCCCCcCCccEEE
Q 015732 146 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN--DK----DRCPQCKGEKVIQ 201 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~--~~----~~C~~C~G~g~~~ 201 (401)
..|..|.|.++ .+|..|+|+-+++. +. .+|..|+=.|.++
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 46999999885 48999999988876 11 4799999888764
No 124
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=78.08 E-value=2 Score=49.23 Aligned_cols=66 Identities=18% Similarity=0.480 Sum_probs=41.2
Q ss_pred cCceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcC---CCCCCCc
Q 015732 118 NGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND---KDRCPQC 194 (401)
Q Consensus 118 ~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~---~~~C~~C 194 (401)
.++...+.+. ...|+.|...... ..|+.|...=. ....|+.|+.. +... ...|+.|
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae--v~~des~a~~CP~C 715 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE--VPPDESGRVECPRC 715 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--cCCCccccccCCCC
Confidence 4555556665 5789999775432 38999997631 12479999874 1110 2389999
Q ss_pred CCccEEEEeE
Q 015732 195 KGEKVIQEKK 204 (401)
Q Consensus 195 ~G~g~~~~~~ 204 (401)
...-+....+
T Consensus 716 Gtplv~~~~~ 725 (1337)
T PRK14714 716 DVELTPYQRR 725 (1337)
T ss_pred CCcccccceE
Confidence 8775444433
No 125
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.01 E-value=1.4 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=12.8
Q ss_pred EeCCCC-CCHHHHHHHHhhCC
Q 015732 324 VDFPES-LSPDQCKMLETVLP 343 (401)
Q Consensus 324 V~~P~~-l~~~~~~~l~~~lp 343 (401)
++=|.. |.+..+..|.++|.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~ 875 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQ 875 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 455765 88777666666653
No 126
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=77.17 E-value=9.8 Score=33.81 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=14.0
Q ss_pred EEEEEEcCCCcCCCEEeccC
Q 015732 205 VLEVIVEKGMQNGQKITFPG 224 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g 224 (401)
.|.+.||||...|..-++.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 56777778877776666654
No 127
>PF13446 RPT: A repeated domain in UCH-protein
Probab=75.90 E-value=4.1 Score=29.91 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.2
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSD 49 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd 49 (401)
++|||+++++++.|-.+|+.... . +|.......+|-.++.+
T Consensus 9 ~~Lgi~~~~~Dd~Ii~~f~~~~~-----~--~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 9 EILGIDEDTDDDFIISAFQSKVN-----D--DPSQKDTLREALRVIAE 49 (62)
T ss_pred HHhCcCCCCCHHHHHHHHHHHHH-----c--ChHhHHHHHHHHHHHHH
Confidence 57999999999999999998766 1 23445555666666653
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=73.14 E-value=3 Score=47.24 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=13.3
Q ss_pred EeCCCC-CCHHHHHHHHhhCC
Q 015732 324 VDFPES-LSPDQCKMLETVLP 343 (401)
Q Consensus 324 V~~P~~-l~~~~~~~l~~~lp 343 (401)
++=|.. |.+..+..|.++|.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 456765 88877766666654
No 129
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=73.09 E-value=4 Score=45.01 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=17.5
Q ss_pred CCEEEEEEEeCCCC-CCHHHHHHHHhhCC
Q 015732 316 GKLYIHFTVDFPES-LSPDQCKMLETVLP 343 (401)
Q Consensus 316 GdL~v~~~V~~P~~-l~~~~~~~l~~~lp 343 (401)
..||| .+=|.. |..++++.|-++|.
T Consensus 844 ~TlYi---LDEPTTGLH~~Di~kLl~VL~ 869 (935)
T COG0178 844 KTLYI---LDEPTTGLHFDDIKKLLEVLH 869 (935)
T ss_pred CeEEE---eCCCCCCCCHHHHHHHHHHHH
Confidence 46776 466877 88888777766664
No 130
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=72.20 E-value=16 Score=33.56 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=21.5
Q ss_pred eccCCcccceEEEEEec-CC--cceeEeEeeCCCCCCc
Q 015732 147 KCSGCQGSGMKVSIRHL-GP--SMIQQMQHPCNECKGT 181 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~~-gp--g~~~~~~~~C~~C~G~ 181 (401)
.|+.|++.|........ =| +-+-.+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 47777777765433332 23 3345567889999766
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=69.49 E-value=5.5 Score=34.88 Aligned_cols=39 Identities=33% Similarity=0.982 Sum_probs=32.2
Q ss_pred eeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCC-------CCCCCcCCccEE
Q 015732 146 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 200 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 200 (401)
..|..|.|.++ .+|..|+|+-+++.+. .+|+.|+=.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999985 4899999999887655 489999887764
No 132
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=68.66 E-value=3.3 Score=21.28 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhC
Q 015732 36 KFKELAQAYEVLS 48 (401)
Q Consensus 36 kFk~I~~AYevLs 48 (401)
+|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 6889999999885
No 133
>PRK04023 DNA polymerase II large subunit; Validated
Probab=65.43 E-value=3.8 Score=45.98 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=44.7
Q ss_pred eeeeeec-CceeeeeeeeeeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCC
Q 015732 112 SLEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 190 (401)
Q Consensus 112 slee~~~-G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~ 190 (401)
++.+++. +++..+.+.. ..|+.|.-.+ ....|+.|+..-. ....|+.|.-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg~-RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGR-RKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeecccC-ccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCc
Confidence 3556666 5666666553 5699997654 3368999997621 1247999954432 367
Q ss_pred CCCcCCccEEEEeEE
Q 015732 191 CPQCKGEKVIQEKKV 205 (401)
Q Consensus 191 C~~C~G~g~~~~~~~ 205 (401)
|++|.-.-.....+.
T Consensus 666 CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 666 CEKCGREPTPYSKRK 680 (1121)
T ss_pred CCCCCCCCCccceEE
Confidence 999987755444433
No 134
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=64.60 E-value=4.1 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCEEEEEEEeCCCC-CCHHHHHHHHhhCC
Q 015732 316 GKLYIHFTVDFPES-LSPDQCKMLETVLP 343 (401)
Q Consensus 316 GdL~v~~~V~~P~~-l~~~~~~~l~~~lp 343 (401)
..||| .+=|.. |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 46776 467877 99988888777753
No 135
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.44 E-value=3.3 Score=46.81 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=18.6
Q ss_pred eCCCCCCcceEEc-------CCCCCCCcCCccEEEEe
Q 015732 174 PCNECKGTGETIN-------DKDRCPQCKGEKVIQEK 203 (401)
Q Consensus 174 ~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~ 203 (401)
.|+.|.|.|.+.. ....|+.|+|+++..+.
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 3666666666542 13578888888775543
No 136
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=61.48 E-value=10 Score=31.10 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=36.8
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCcccccccc-ccCc
Q 015732 5 ESRKNASQ-DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD-QYGE 61 (401)
Q Consensus 5 gv~~~As~-~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLsd~~kR~~YD-~~g~ 61 (401)
|++|++.. .+|-+.++.+...+++ .+++.+..|.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 56666644 3677778888888776 5678999999999 79999999999 6664
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.57 E-value=11 Score=41.55 Aligned_cols=50 Identities=22% Similarity=0.644 Sum_probs=33.9
Q ss_pred eeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCc
Q 015732 129 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 197 (401)
Q Consensus 129 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 197 (401)
.+.|..|. ....|+.|... +. .++.. -+..|..|+-...+ -..|+.|.+.
T Consensus 435 ~l~C~~Cg-------~v~~Cp~Cd~~-lt--~H~~~------~~L~CH~Cg~~~~~---p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG-------YIAECPNCDSP-LT--LHKAT------GQLRCHYCGYQEPI---PQSCPECGSE 484 (730)
T ss_pred eeecccCC-------CcccCCCCCcc-eE--EecCC------CeeEeCCCCCCCCC---CCCCCCCCCC
Confidence 47899994 34689999976 11 12211 24679999877433 2799999876
No 138
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=59.23 E-value=10 Score=23.15 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhC
Q 015732 12 QDDLKKAYRKAAIKNH 27 (401)
Q Consensus 12 ~~eIKkAYrkla~k~H 27 (401)
.++.|.+-|+.|+.||
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3688899999999999
No 139
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=49.65 E-value=7.4 Score=40.00 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=18.0
Q ss_pred EecCCcceeEeEeeCCCCCCcceEEc
Q 015732 161 RHLGPSMIQQMQHPCNECKGTGETIN 186 (401)
Q Consensus 161 ~~~gpg~~~~~~~~C~~C~G~G~~~~ 186 (401)
++.++.+...+..+||.|+|+|.+..
T Consensus 379 kr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 379 KRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred cccCcChHHHhcCCCCCCcCeeEEcc
Confidence 34555566667778888888887654
No 140
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=49.10 E-value=49 Score=29.50 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=14.3
Q ss_pred EEEEEEcCCC-cCCCEEeccC
Q 015732 205 VLEVIVEKGM-QNGQKITFPG 224 (401)
Q Consensus 205 ~l~V~Ip~G~-~~G~~i~~~g 224 (401)
.|.+.||||. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 5788888987 5666665654
No 141
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=48.81 E-value=36 Score=28.34 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC---CC-----hHHHHHHHHHHHHhCCcc
Q 015732 8 KNASQDDLKKAYRKAAIKNHPDKG---GD-----PEKFKELAQAYEVLSDPE 51 (401)
Q Consensus 8 ~~As~~eIKkAYrkla~k~HPDkn---~~-----~~kFk~I~~AYevLsd~~ 51 (401)
+..+..++++|.|.+-++-|||.- |. ++-+|.++.--+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 456778999999999999999963 32 356777777777776543
No 142
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=48.15 E-value=1e+02 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCcCCCEEecc-CCcCCCCCCCcccEEE
Q 015732 204 KVLEVIVEKGMQNGQKITFP-GEADEAPDTVTGDIVF 239 (401)
Q Consensus 204 ~~l~V~Ip~G~~~G~~i~~~-g~G~~~~g~~~GDliv 239 (401)
..++|.|..=...|.-|.-. |.---.++..|||.+-
T Consensus 149 e~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V~ 185 (201)
T PRK12336 149 KTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVVK 185 (201)
T ss_pred CEEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEEE
Confidence 34567776666666666432 2111256778888753
No 143
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=47.85 E-value=15 Score=36.62 Aligned_cols=31 Identities=45% Similarity=0.919 Sum_probs=21.3
Q ss_pred eeeeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcce
Q 015732 127 SRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMI 168 (401)
Q Consensus 127 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~ 168 (401)
...+.|..|.|.| |+.|+++|++.. +|-||+
T Consensus 258 Evdv~~~~~~g~g--------c~~ck~~~WiEi---lG~Gmv 288 (339)
T PRK00488 258 EVDVSCFKCGGKG--------CRVCKGTGWLEI---LGCGMV 288 (339)
T ss_pred EEEEEEeccCCCc--------ccccCCCCceEE---eccCcc
Confidence 3457788888776 888898887543 344443
No 144
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=47.56 E-value=30 Score=24.54 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.0
Q ss_pred eeccCCcccceE
Q 015732 146 MKCSGCQGSGMK 157 (401)
Q Consensus 146 ~~C~~C~G~G~~ 157 (401)
.+|+.|.|....
T Consensus 2 kPCPfCGg~~~~ 13 (53)
T TIGR03655 2 KPCPFCGGADVY 13 (53)
T ss_pred CCCCCCCCccee
Confidence 357777777663
No 145
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=47.10 E-value=24 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=19.5
Q ss_pred CCCCEEEEEEEeCCCC--CCHHHHHHH
Q 015732 314 MRGKLYIHFTVDFPES--LSPDQCKML 338 (401)
Q Consensus 314 ~~GdL~v~~~V~~P~~--l~~~~~~~l 338 (401)
..||+.|-|+|.+|+- +|.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 3699999999999998 566655443
No 146
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.51 E-value=19 Score=38.01 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=32.5
Q ss_pred eeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCcc
Q 015732 129 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 198 (401)
Q Consensus 129 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 198 (401)
.+.|..|. ....|+.|.+. +... +. .-...|..|+-+- .....|+.|.+..
T Consensus 213 ~~~C~~Cg-------~~~~C~~C~~~-l~~h-~~-------~~~l~Ch~Cg~~~---~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCG-------YILCCPNCDVS-LTYH-KK-------EGKLRCHYCGYQE---PIPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCc-------CccCCCCCCCc-eEEe-cC-------CCeEEcCCCcCcC---CCCCCCCCCCCCe
Confidence 36899994 34689999864 2211 11 1246799997543 3347999998764
No 147
>PRK05580 primosome assembly protein PriA; Validated
Probab=46.39 E-value=17 Score=39.88 Aligned_cols=61 Identities=26% Similarity=0.620 Sum_probs=37.3
Q ss_pred Cceeeeeeee-----eeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCC
Q 015732 119 GTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQ 193 (401)
Q Consensus 119 G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~ 193 (401)
|...-+-++| .+.|..|. ....|+.|.+. +... .. .-...|..|+-+-. ....|+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg-------~~~~C~~C~~~-l~~h-~~-------~~~l~Ch~Cg~~~~---~~~~Cp~ 426 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCG-------WVAECPHCDAS-LTLH-RF-------QRRLRCHHCGYQEP---IPKACPE 426 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCc-------CccCCCCCCCc-eeEE-CC-------CCeEECCCCcCCCC---CCCCCCC
Confidence 3344444444 57899884 34689999983 3221 11 12457999975532 2378999
Q ss_pred cCCcc
Q 015732 194 CKGEK 198 (401)
Q Consensus 194 C~G~g 198 (401)
|.+..
T Consensus 427 Cg~~~ 431 (679)
T PRK05580 427 CGSTD 431 (679)
T ss_pred CcCCe
Confidence 98763
No 148
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.64 E-value=13 Score=40.38 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=31.4
Q ss_pred eecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCc
Q 015732 130 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 197 (401)
Q Consensus 130 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 197 (401)
..|+.|.-.-. ...+.|+.|...- ....|+.|+-. +......|+.|.-.
T Consensus 2 ~~Cp~Cg~~n~--~~akFC~~CG~~l---------------~~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENP--NNNRFCQKCGTSL---------------THKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCC--CCCccccccCCCC---------------CCCcCCCCCCC--CCcccccccccCCc
Confidence 57999965421 2235799994432 12479999765 23345789999766
No 149
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.71 E-value=9.5 Score=25.06 Aligned_cols=6 Identities=67% Similarity=1.979 Sum_probs=3.0
Q ss_pred CCCCcC
Q 015732 190 RCPQCK 195 (401)
Q Consensus 190 ~C~~C~ 195 (401)
+|++|+
T Consensus 27 rC~~C~ 32 (37)
T PF13719_consen 27 RCPKCG 32 (37)
T ss_pred ECCCCC
Confidence 455553
No 150
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=43.60 E-value=60 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=23.8
Q ss_pred cEEEEEecCCcEEEEEeCCCccccCCcEEEecC
Q 015732 271 FQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 303 (401)
Q Consensus 271 ~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g 303 (401)
-...++|-+|+.+-|.+|.+..+++|+++....
T Consensus 29 ~r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 29 RRLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp SEEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred eEEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 356788899999999999999999999987754
No 151
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=42.34 E-value=8.3 Score=42.62 Aligned_cols=54 Identities=24% Similarity=0.523 Sum_probs=0.0
Q ss_pred eecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcCCccEEEEeEE
Q 015732 130 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 205 (401)
Q Consensus 130 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~ 205 (401)
..|+.|.-... ...|+.|.+.=. ....|+.|+-.- ..+.|++|.-.......+.
T Consensus 656 r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~~~ 709 (900)
T PF03833_consen 656 RRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEV----EEDECPKCGRETTSYSKQK 709 (900)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccCcccCCcch----hhcCcccCCccc--------------cceecccccccc----CccccccccccCcccceee
Confidence 56888854432 357888886532 235799996532 2368999987754444433
No 152
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=42.01 E-value=10 Score=43.16 Aligned_cols=35 Identities=34% Similarity=0.748 Sum_probs=26.1
Q ss_pred eeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceE
Q 015732 146 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 184 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 184 (401)
-.|+.|.|.|.+....++-+ .+..+|+.|+|+...
T Consensus 739 G~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLP----DVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEeccCC----CccccCccccCcccc
Confidence 35999999999876554433 245799999998764
No 153
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=41.82 E-value=9.5 Score=46.08 Aligned_cols=31 Identities=29% Similarity=0.696 Sum_probs=22.3
Q ss_pred eeCCCCCCcceEEc-------CCCCCCCcCCccEEEEe
Q 015732 173 HPCNECKGTGETIN-------DKDRCPQCKGEKVIQEK 203 (401)
Q Consensus 173 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~ 203 (401)
-.|+.|.|.|.+.. -...|..|+|+++..+.
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 45888888887643 22579999999886554
No 154
>PRK11712 ribonuclease G; Provisional
Probab=38.18 E-value=13 Score=39.05 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=18.0
Q ss_pred EecCCcceeEeEeeCCCCCCcceEEc
Q 015732 161 RHLGPSMIQQMQHPCNECKGTGETIN 186 (401)
Q Consensus 161 ~~~gpg~~~~~~~~C~~C~G~G~~~~ 186 (401)
++.++.+...+..+||.|+|+|.+.+
T Consensus 391 kR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 391 KRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred cccCCChHHHhcCCCCCCCCCCCcCC
Confidence 34556566667778888888887654
No 155
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=37.92 E-value=33 Score=22.02 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=6.7
Q ss_pred eeccCCcccceE
Q 015732 146 MKCSGCQGSGMK 157 (401)
Q Consensus 146 ~~C~~C~G~G~~ 157 (401)
..|+.|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 346666666643
No 156
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=37.56 E-value=91 Score=23.98 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=25.6
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD 33 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~ 33 (401)
++.|+++-||..||+.|-++..+|..=-..|+
T Consensus 7 ~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 7 ELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred HHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 56799999999999999988888875444443
No 157
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=36.51 E-value=19 Score=34.04 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.5
Q ss_pred eeCCCCCCcceEEc
Q 015732 173 HPCNECKGTGETIN 186 (401)
Q Consensus 173 ~~C~~C~G~G~~~~ 186 (401)
.+||.|+|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 36666666666543
No 158
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=36.03 E-value=61 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=17.5
Q ss_pred eeccCCcccceEEEEEecC--CcceeEeEeeCCCCCC
Q 015732 146 MKCSGCQGSGMKVSIRHLG--PSMIQQMQHPCNECKG 180 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~g--pg~~~~~~~~C~~C~G 180 (401)
..|+.|+..|......-.= ++-+-.+...|+.|+=
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGy 38 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGY 38 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCC
Confidence 3588888888653322222 2334456677888853
No 159
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.12 E-value=53 Score=27.92 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=14.0
Q ss_pred eEEEEEEEcCCCcCCCEEecc
Q 015732 203 KKVLEVIVEKGMQNGQKITFP 223 (401)
Q Consensus 203 ~~~l~V~Ip~G~~~G~~i~~~ 223 (401)
...+++.-+.+.+.||.+.+.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEE
Confidence 356666667777777777654
No 160
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=34.65 E-value=24 Score=29.35 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=4.3
Q ss_pred eeccCCccc
Q 015732 146 MKCSGCQGS 154 (401)
Q Consensus 146 ~~C~~C~G~ 154 (401)
..|..|+-.
T Consensus 71 ~~C~~Cg~~ 79 (113)
T PF01155_consen 71 ARCRDCGHE 79 (113)
T ss_dssp EEETTTS-E
T ss_pred EECCCCCCE
Confidence 456555543
No 161
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=34.58 E-value=16 Score=40.51 Aligned_cols=33 Identities=33% Similarity=0.784 Sum_probs=25.3
Q ss_pred eccCCcccceEEEEEecCCcceeEeEeeCCCCCCcce
Q 015732 147 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 183 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 183 (401)
.|..|.|.|++.....+-| .+..+|+.|+|+-.
T Consensus 732 RCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 6999999998766555444 45689999998754
No 162
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.17 E-value=44 Score=27.79 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=4.7
Q ss_pred eeecCcccC
Q 015732 129 NVICTKCKG 137 (401)
Q Consensus 129 ~~~C~~C~G 137 (401)
...|..|..
T Consensus 70 ~~~C~~Cg~ 78 (113)
T PRK12380 70 QAWCWDCSQ 78 (113)
T ss_pred EEEcccCCC
Confidence 345666653
No 163
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.81 E-value=52 Score=27.34 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=4.3
Q ss_pred eeccCCc
Q 015732 146 MKCSGCQ 152 (401)
Q Consensus 146 ~~C~~C~ 152 (401)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 4566666
No 164
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=33.68 E-value=53 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.1
Q ss_pred EEEeCCCccccCCcEEEecCC
Q 015732 284 LIKSQPGEVVKPDQFKAINDE 304 (401)
Q Consensus 284 ~i~ip~g~vi~~g~~~~i~g~ 304 (401)
.+.++||+.++-|+.+.|.++
T Consensus 66 ~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 66 EVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred eEecCCCCeEecCCEEEEcCC
Confidence 456777877777888777653
No 165
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=32.84 E-value=16 Score=29.46 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=8.5
Q ss_pred eeCCCCCCcceE
Q 015732 173 HPCNECKGTGET 184 (401)
Q Consensus 173 ~~C~~C~G~G~~ 184 (401)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 567777777764
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.51 E-value=44 Score=36.58 Aligned_cols=57 Identities=21% Similarity=0.592 Sum_probs=36.7
Q ss_pred eeeeeeee-----eeecCcccCCCCccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCcceEEcCCCCCCCcC
Q 015732 121 SKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 195 (401)
Q Consensus 121 ~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 195 (401)
..-+-++| .+.|..|. ....|+.|.+.=. . ... .-.-.|..|+-.- . ...|+.|.
T Consensus 370 qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L~-~-h~~-------~~~l~Ch~CG~~~--~--p~~Cp~Cg 429 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPLG-L-PSA-------GGTPRCRWCGRAA--P--DWRCPRCG 429 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCcee-E-ecC-------CCeeECCCCcCCC--c--CccCCCCc
Confidence 55555555 37899993 4578999997521 1 111 1245799998642 2 47999998
Q ss_pred Cc
Q 015732 196 GE 197 (401)
Q Consensus 196 G~ 197 (401)
+.
T Consensus 430 s~ 431 (665)
T PRK14873 430 SD 431 (665)
T ss_pred CC
Confidence 76
No 167
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=32.40 E-value=50 Score=29.18 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=19.2
Q ss_pred eccCCcccc-eEEEEEecCCcceeEeEeeCCCCCCc
Q 015732 147 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKGT 181 (401)
Q Consensus 147 ~C~~C~G~G-~~~~~~~~gpg~~~~~~~~C~~C~G~ 181 (401)
.||.|...- .++..+-+.||..-.....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 477777765 44555556665322223556666544
No 168
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.02 E-value=45 Score=29.18 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=7.1
Q ss_pred CCCCCcCCccEEE
Q 015732 189 DRCPQCKGEKVIQ 201 (401)
Q Consensus 189 ~~C~~C~G~g~~~ 201 (401)
.+|++|.+..+.+
T Consensus 131 ~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 131 PPCPKCGHTEFTR 143 (146)
T ss_pred CCCCCCCCCeeee
Confidence 4566666655443
No 169
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.51 E-value=64 Score=26.87 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=6.5
Q ss_pred eeCCCCCCcce
Q 015732 173 HPCNECKGTGE 183 (401)
Q Consensus 173 ~~C~~C~G~G~ 183 (401)
..||.|++...
T Consensus 87 ~~CP~Cgs~~~ 97 (115)
T TIGR00100 87 YRCPKCHGIML 97 (115)
T ss_pred ccCcCCcCCCc
Confidence 45777766553
No 170
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.53 E-value=47 Score=32.79 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=5.7
Q ss_pred eeecCcccCC
Q 015732 129 NVICTKCKGK 138 (401)
Q Consensus 129 ~~~C~~C~G~ 138 (401)
...|+.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 3456666554
No 171
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=30.19 E-value=34 Score=25.79 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=7.9
Q ss_pred eeccCCcccceEE
Q 015732 146 MKCSGCQGSGMKV 158 (401)
Q Consensus 146 ~~C~~C~G~G~~~ 158 (401)
-||..|+.+-...
T Consensus 5 FTC~~C~~Rs~~~ 17 (66)
T PF05180_consen 5 FTCNKCGTRSAKM 17 (66)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCCcccee
Confidence 3677777665443
No 172
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.11 E-value=20 Score=21.55 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=12.5
Q ss_pred eeCCCCCCcceEEcCCCCCCCcC
Q 015732 173 HPCNECKGTGETINDKDRCPQCK 195 (401)
Q Consensus 173 ~~C~~C~G~G~~~~~~~~C~~C~ 195 (401)
..|+.|+- .+-.....|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 46777754 2333456777774
No 173
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=29.38 E-value=93 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=9.8
Q ss_pred eccCCcccceEEEEEe
Q 015732 147 KCSGCQGSGMKVSIRH 162 (401)
Q Consensus 147 ~C~~C~G~G~~~~~~~ 162 (401)
.|+.|+....+....|
T Consensus 2 ~Cp~C~~~~a~~~q~Q 17 (40)
T smart00440 2 PCPKCGNREATFFQLQ 17 (40)
T ss_pred cCCCCCCCeEEEEEEc
Confidence 4777776666654443
No 174
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=29.38 E-value=79 Score=25.90 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=7.2
Q ss_pred eeccCCcccceE
Q 015732 146 MKCSGCQGSGMK 157 (401)
Q Consensus 146 ~~C~~C~G~G~~ 157 (401)
-.|.-|.++|+.
T Consensus 36 daCeiC~~~GY~ 47 (102)
T PF10080_consen 36 DACEICGPKGYY 47 (102)
T ss_pred EeccccCCCceE
Confidence 356666666653
No 175
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=29.19 E-value=67 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=16.5
Q ss_pred eeccCCcccceEEEEEecCC--cceeEeEeeCCCCCC
Q 015732 146 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKG 180 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~gp--g~~~~~~~~C~~C~G 180 (401)
.+|+-| |...+......+. ++. ....|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 467777 6555544333322 111 3455777765
No 176
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.13 E-value=37 Score=32.49 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=23.6
Q ss_pred eccCCHHHHhCC-cEEEEEecCCcEEEEEeCC
Q 015732 259 EHTLSLTEALCG-FQFVITHLDGRQLLIKSQP 289 (401)
Q Consensus 259 ~~~I~l~eAl~G-~~~~i~~ldG~~l~i~ip~ 289 (401)
..+|-||||++| +.++|+|.|+..=.+.|-|
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 457999999999 6899999998643344333
No 177
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=28.74 E-value=1.2e+02 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=34.3
Q ss_pred eeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecC
Q 015732 258 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 303 (401)
Q Consensus 258 ~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g 303 (401)
-++.|++.++ .-..+.+.|-+|+.+-|.+|.|.++..|+++....
T Consensus 23 ~~V~L~~ddr-~KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 23 PTLTLAFDAR-CKSRLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred eEEEECHHHh-hcceEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 3456666444 44467788889999999999998899999887654
No 178
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=28.52 E-value=27 Score=33.04 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=7.9
Q ss_pred eecCcccCCCCcc
Q 015732 130 VICTKCKGKGSKS 142 (401)
Q Consensus 130 ~~C~~C~G~G~~~ 142 (401)
+.||+|+|+|.-+
T Consensus 39 vtCPTCqGtGrIP 51 (238)
T PF07092_consen 39 VTCPTCQGTGRIP 51 (238)
T ss_pred CcCCCCcCCccCC
Confidence 4566666666543
No 179
>PRK05978 hypothetical protein; Provisional
Probab=27.54 E-value=34 Score=29.98 Aligned_cols=8 Identities=38% Similarity=1.066 Sum_probs=4.6
Q ss_pred CCCCCCcC
Q 015732 188 KDRCPQCK 195 (401)
Q Consensus 188 ~~~C~~C~ 195 (401)
.+.|+.|.
T Consensus 52 ~~~C~~CG 59 (148)
T PRK05978 52 VDHCAACG 59 (148)
T ss_pred CCCccccC
Confidence 35666663
No 180
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.27 E-value=36 Score=26.44 Aligned_cols=8 Identities=63% Similarity=1.842 Sum_probs=4.9
Q ss_pred CCCCCcCC
Q 015732 189 DRCPQCKG 196 (401)
Q Consensus 189 ~~C~~C~G 196 (401)
+.|+.|.|
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 56666655
No 181
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.26 E-value=98 Score=26.29 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.0
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 015732 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (401)
Q Consensus 2 ~iLgv~~~As~~eIKkAYrkla~k~HPDkn~~~~kFk~I~~AYevLs 48 (401)
.||+|+..-+.+||-+-|-.|-.-..+.|.++=-.-.++-.|-|-|-
T Consensus 63 qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 63 QILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred hHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 58999999999999999999999887777765211122333555553
No 182
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.16 E-value=74 Score=26.48 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=19.4
Q ss_pred eeeecCcccCCCCccCCeeeccCCcccceE
Q 015732 128 RNVICTKCKGKGSKSGASMKCSGCQGSGMK 157 (401)
Q Consensus 128 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 157 (401)
....|..|.-.-........||.|++....
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCCcE
Confidence 346788887444333334679999988754
No 183
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.82 E-value=49 Score=19.77 Aligned_cols=7 Identities=43% Similarity=1.398 Sum_probs=3.8
Q ss_pred eeCCCCC
Q 015732 173 HPCNECK 179 (401)
Q Consensus 173 ~~C~~C~ 179 (401)
.+||.|+
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 4566653
No 184
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.54 E-value=56 Score=21.30 Aligned_cols=6 Identities=50% Similarity=1.580 Sum_probs=2.9
Q ss_pred CCCCcC
Q 015732 190 RCPQCK 195 (401)
Q Consensus 190 ~C~~C~ 195 (401)
+|++|.
T Consensus 27 ~C~~C~ 32 (36)
T PF13717_consen 27 RCSKCG 32 (36)
T ss_pred ECCCCC
Confidence 455553
No 185
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.53 E-value=33 Score=28.53 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=17.9
Q ss_pred eEeeCCCCCCcceEEcCCCCCCCcCCc
Q 015732 171 MQHPCNECKGTGETINDKDRCPQCKGE 197 (401)
Q Consensus 171 ~~~~C~~C~G~G~~~~~~~~C~~C~G~ 197 (401)
.+..||.|+=.=+..-..+.|..|+-.
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCc
Confidence 456788887654444456889999644
No 186
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.84 E-value=49 Score=21.74 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=4.4
Q ss_pred eccCCcccc
Q 015732 147 KCSGCQGSG 155 (401)
Q Consensus 147 ~C~~C~G~G 155 (401)
.|+.|+..-
T Consensus 7 ~CP~C~s~~ 15 (36)
T PF03811_consen 7 HCPRCQSTE 15 (36)
T ss_pred eCCCCCCCC
Confidence 455555443
No 187
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=25.02 E-value=71 Score=23.67 Aligned_cols=26 Identities=35% Similarity=0.873 Sum_probs=14.2
Q ss_pred eCCCCCCcceEEcCCCCCCCcCCccEEEEe
Q 015732 174 PCNECKGTGETINDKDRCPQCKGEKVIQEK 203 (401)
Q Consensus 174 ~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 203 (401)
.|..|+ .+.+.+.|+.|...-.+.+.
T Consensus 5 AC~~C~----~i~~~~~CP~Cgs~~~T~~W 30 (61)
T PRK08351 5 ACRHCH----YITTEDRCPVCGSRDLSDEW 30 (61)
T ss_pred hhhhCC----cccCCCcCCCCcCCcccccc
Confidence 455553 22345678888776544443
No 188
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=24.92 E-value=44 Score=24.49 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.0
Q ss_pred eEeeeeeeeecCcee
Q 015732 108 PLKVSLEDLYNGTSK 122 (401)
Q Consensus 108 ~l~vslee~~~G~~~ 122 (401)
..+|+|+++.+|-.+
T Consensus 30 RFeIsLeDl~~GE~V 44 (67)
T COG5216 30 RFEISLEDLRNGEVV 44 (67)
T ss_pred EeEEEHHHhhCCceE
Confidence 367899999998754
No 189
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=24.67 E-value=57 Score=21.96 Aligned_cols=10 Identities=40% Similarity=0.797 Sum_probs=3.7
Q ss_pred eecCcccCCC
Q 015732 130 VICTKCKGKG 139 (401)
Q Consensus 130 ~~C~~C~G~G 139 (401)
..||.|.|+.
T Consensus 4 ~pCP~CGG~D 13 (40)
T PF08273_consen 4 GPCPICGGKD 13 (40)
T ss_dssp E--TTTT-TT
T ss_pred CCCCCCcCcc
Confidence 4555555554
No 190
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=24.61 E-value=2.8e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=17.4
Q ss_pred HhCCcE-EEEEecCCcEEEEEeCC
Q 015732 267 ALCGFQ-FVITHLDGRQLLIKSQP 289 (401)
Q Consensus 267 Al~G~~-~~i~~ldG~~l~i~ip~ 289 (401)
+++|.. +.|...||.+..+.+|.
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEech
Confidence 455654 67899999988888875
No 191
>PRK02935 hypothetical protein; Provisional
Probab=24.57 E-value=44 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=18.3
Q ss_pred eEeeCCCCCCcceEEcCCCCCCCcCCc
Q 015732 171 MQHPCNECKGTGETINDKDRCPQCKGE 197 (401)
Q Consensus 171 ~~~~C~~C~G~G~~~~~~~~C~~C~G~ 197 (401)
.+..||.|+=.=+..-..|.|-.|+-.
T Consensus 69 vqV~CP~C~K~TKmLGrvD~CM~C~~P 95 (110)
T PRK02935 69 VQVICPSCEKPTKMLGRVDACMHCNQP 95 (110)
T ss_pred eeeECCCCCchhhhccceeecCcCCCc
Confidence 456788887654444456889999643
No 192
>PLN00115 pollen allergen group 3; Provisional
Probab=24.20 E-value=4.3e+02 Score=22.20 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred EEEEEEcCCCcCCCEEeccCCcCCCCCCCcccEEEEEEEeeCC--cce----ec-CcceeeeccCCHHHHhCC-cEEEEE
Q 015732 205 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP--KFK----RK-GDDLFVEHTLSLTEALCG-FQFVIT 276 (401)
Q Consensus 205 ~l~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDliv~i~~~~h~--~f~----R~-g~dL~~~~~I~l~eAl~G-~~~~i~ 276 (401)
.++++|..|..+..-..+. .+| |..+.++.+. .|. |. |..-.+.- ...|.| +++.+.
T Consensus 25 ~v~F~V~~gSnp~yL~ll~----------~~d-I~~V~Ik~~g~~~W~~~M~rswGavW~~~s----~~pl~GPlS~R~t 89 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT----------NVA-ISEVEIKEKGAKDWVDDLKESSTNTWTLKS----KAPLKGPFSVRFL 89 (118)
T ss_pred ceEEEECCCCCcceEEEEE----------eCC-EEEEEEeecCCCcccCccccCccceeEecC----CCCCCCceEEEEE
Confidence 4677777777433322222 234 6777777763 233 22 33222211 123444 567777
Q ss_pred ecCCcEEEEE--eCCCccccCCcEE
Q 015732 277 HLDGRQLLIK--SQPGEVVKPDQFK 299 (401)
Q Consensus 277 ~ldG~~l~i~--ip~g~vi~~g~~~ 299 (401)
+-+|+.+... ||.+ -++|++.
T Consensus 90 ~~~G~~~va~nViPa~--Wk~G~tY 112 (118)
T PLN00115 90 VKGGGYRVVDDVIPES--FKAGSVY 112 (118)
T ss_pred EeCCCEEEECceECCC--CCCCCEE
Confidence 7778765432 5665 5667655
No 193
>PF14353 CpXC: CpXC protein
Probab=23.98 E-value=32 Score=28.97 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=20.7
Q ss_pred eeccCCcccceEEEEEecC----Ccce------eEeEeeCCCCCCcce
Q 015732 146 MKCSGCQGSGMKVSIRHLG----PSMI------QQMQHPCNECKGTGE 183 (401)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~g----pg~~------~~~~~~C~~C~G~G~ 183 (401)
.+|+.|+.......-..+. |.+. +-...+||.|+....
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 4799999887754422221 1110 113567777776654
No 194
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.58 E-value=1.4e+02 Score=21.63 Aligned_cols=12 Identities=50% Similarity=1.054 Sum_probs=7.6
Q ss_pred CCCCCcCCccEE
Q 015732 189 DRCPQCKGEKVI 200 (401)
Q Consensus 189 ~~C~~C~G~g~~ 200 (401)
..|++|+-+-.+
T Consensus 29 lyCpKCK~EtlI 40 (55)
T PF14205_consen 29 LYCPKCKQETLI 40 (55)
T ss_pred ccCCCCCceEEE
Confidence 467777766444
No 195
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=23.36 E-value=63 Score=24.01 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=12.6
Q ss_pred CCCcCCccEEEEeEEEEEEEc
Q 015732 191 CPQCKGEKVIQEKKVLEVIVE 211 (401)
Q Consensus 191 C~~C~G~g~~~~~~~l~V~Ip 211 (401)
|+.|+....+.+..-+-|-|.
T Consensus 21 CP~Cgs~~~te~W~G~~iIid 41 (64)
T COG2093 21 CPVCGSTDLTEEWFGLLIIID 41 (64)
T ss_pred CCCCCCcccchhhccEEEEEc
Confidence 777777766665554444443
No 196
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=23.26 E-value=94 Score=28.47 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=33.9
Q ss_pred ecCcceeeeccCCHHHHhCCcEEEEEecCCcEEEEEeCCCc
Q 015732 251 RKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 291 (401)
Q Consensus 251 R~g~dL~~~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~ 291 (401)
|--.||.+++-.+=.|-.-|++..|....|. ..|++|+|+
T Consensus 113 ~lrtdls~tlfl~DPedYdGGeLVv~dtYg~-h~VklPAGd 152 (229)
T COG3128 113 RLRTDLSCTLFLSDPEDYDGGELVVNDTYGN-HRVKLPAGD 152 (229)
T ss_pred eeEeeeeeeeecCCccccCCceEEEeccccc-eEEeccCCC
Confidence 5567888888888789999999999999995 789999875
No 197
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=23.10 E-value=62 Score=27.07 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=32.3
Q ss_pred CcEEEEEecCCcEEEEEeCCCc--cccCCcEEEecCCCCcCCCCCC--CCCCEEEEEEEeCCC
Q 015732 270 GFQFVITHLDGRQLLIKSQPGE--VVKPDQFKAINDEGMPMYQRPF--MRGKLYIHFTVDFPE 328 (401)
Q Consensus 270 G~~~~i~~ldG~~l~i~ip~g~--vi~~g~~~~i~g~Gmp~~~~~~--~~GdL~v~~~V~~P~ 328 (401)
|..+.|.+.||+.+.-+||+|= +++.|+.+. .|-|...+|+ .+|-.=.++-..=|.
T Consensus 23 g~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p~ 82 (118)
T PF01333_consen 23 GYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNPN 82 (118)
T ss_dssp EEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--SH
T ss_pred CEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeeccc
Confidence 4678999999998888999883 345566542 3556665553 456666666666554
No 198
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=23.04 E-value=3.4e+02 Score=30.94 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHhhC
Q 015732 329 SLSPDQCKMLETVL 342 (401)
Q Consensus 329 ~l~~~~~~~l~~~l 342 (401)
.+++.+...|-+++
T Consensus 568 kms~~~Q~aLlEaM 581 (915)
T PTZ00111 568 KCHNESRLSLYEVM 581 (915)
T ss_pred hCCHHHHHHHHHHH
Confidence 36776666565555
No 199
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=22.82 E-value=52 Score=29.50 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=10.7
Q ss_pred eecCcccCCCCccCCeeeccCCcccc
Q 015732 130 VICTKCKGKGSKSGASMKCSGCQGSG 155 (401)
Q Consensus 130 ~~C~~C~G~G~~~~~~~~C~~C~G~G 155 (401)
++|..|.+.-.+. .+||.|.+.|
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G 185 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHG 185 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCC
Confidence 4566665543322 2355554444
No 200
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=22.39 E-value=24 Score=23.85 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=9.5
Q ss_pred HHHHHHhCCcc
Q 015732 41 AQAYEVLSDPE 51 (401)
Q Consensus 41 ~~AYevLsd~~ 51 (401)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 68999999875
No 201
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=22.15 E-value=4.2e+02 Score=21.28 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=48.0
Q ss_pred CCcEEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015732 269 CGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 343 (401)
Q Consensus 269 ~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~v~~~V~~P~~l~~~~~~~l~~~lp 343 (401)
-|..+.+.+.||..++|.+++..-...+..+-|-|+=.+ ...+-+..-++|..+++.+....|-++..
T Consensus 28 ~~~~~~~~~~Dg~~v~v~l~~~~~~~~~~~vEViG~V~~-------~~~I~~~~~~~~g~~~D~~~yn~lv~l~~ 95 (101)
T cd04479 28 DGDSLTLISSDGVNVTVELNRPLDLPISGYVEVIGKVSP-------DLTIRVLSYIDFGDDFDMDLYNELVKLSH 95 (101)
T ss_pred cCCeEEEEcCCCCEEEEEeCCCCCcccCCEEEEEEEECC-------CCeEEEEEEEECCCccCHHHHHHHHHHHh
Confidence 344678888898778887775433566777777775433 24466777788999999888877777764
No 202
>PRK14113 urease accessory protein UreE; Provisional
Probab=22.04 E-value=1.8e+02 Score=25.62 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=34.8
Q ss_pred eccCCHHHHhCCcEEEEEecCCcEEEEEeCCCccccCCcEEEecC
Q 015732 259 EHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 303 (401)
Q Consensus 259 ~~~I~l~eAl~G~~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g 303 (401)
++.+++ +...-....+.|-.|+.+-|.+|.++.+.+|+.+....
T Consensus 18 ~v~L~~-~~r~r~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~dd 61 (152)
T PRK14113 18 SITLDH-DTRKKGRIKSVTDNGEEIGVFLERGHPLLVGEILKTEC 61 (152)
T ss_pred EEEECH-HHhhhceEEEEcCCCcEEEEECCCCcccCCCCEEEcCC
Confidence 355665 55555678889999999999999999999999986543
No 203
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.90 E-value=1.1e+02 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=17.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhh
Q 015732 321 HFTVDFPESLSPDQCKMLETV 341 (401)
Q Consensus 321 ~~~V~~P~~l~~~~~~~l~~~ 341 (401)
..+..||.+||++++..+-.+
T Consensus 17 ~~eL~Fp~~ls~~eRriih~l 37 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLL 37 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 567889999999998877665
No 204
>PRK11032 hypothetical protein; Provisional
Probab=21.31 E-value=92 Score=27.70 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhC
Q 015732 14 DLKKAYRKAAIKNH 27 (401)
Q Consensus 14 eIKkAYrkla~k~H 27 (401)
..+++|.++..+..
T Consensus 3 k~~~~Y~~ll~~v~ 16 (160)
T PRK11032 3 KVAQYYRELVASLT 16 (160)
T ss_pred hHHHHHHHHHHHHH
Confidence 46788888875443
No 205
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.28 E-value=43 Score=27.76 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=17.1
Q ss_pred eeeecCcccCCCCccCCeeeccCCcccceE
Q 015732 128 RNVICTKCKGKGSKSGASMKCSGCQGSGMK 157 (401)
Q Consensus 128 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 157 (401)
....|..|.-..........||.|++....
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFDFSCPRCGSPDVE 98 (113)
T ss_dssp -EEEETTTS-EEECHHCCHH-SSSSSS-EE
T ss_pred CcEECCCCCCEEecCCCCCCCcCCcCCCcE
Confidence 446788887766544333568888877643
No 206
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.21 E-value=3.3e+02 Score=21.12 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=31.2
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHH----HHHHHHHHHhC
Q 015732 3 FSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKF----KELAQAYEVLS 48 (401)
Q Consensus 3 iLgv~~~As~~eIKkAYrkla~k~HPDkn~~---~~kF----k~I~~AYevLs 48 (401)
+-|+.|-||++||..|-.+..+|.-=-..|+ .+-| .+|..|-.-|-
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988888875444443 2444 34555554443
No 207
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=21.17 E-value=1e+02 Score=32.52 Aligned_cols=26 Identities=27% Similarity=0.643 Sum_probs=19.0
Q ss_pred EecCCcceeEeEeeCCCCCCcceEEc
Q 015732 161 RHLGPSMIQQMQHPCNECKGTGETIN 186 (401)
Q Consensus 161 ~~~gpg~~~~~~~~C~~C~G~G~~~~ 186 (401)
++.++.+......+|+.|.|+|.+..
T Consensus 384 ~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 384 KRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EecCCCCceeeeeECCCceeeEEEec
Confidence 33466666777788888888888765
No 208
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=79 Score=25.54 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.1
Q ss_pred eeCCCCCCCHHHHHHHHHHH
Q 015732 3 FSESRKNASQDDLKKAYRKA 22 (401)
Q Consensus 3 iLgv~~~As~~eIKkAYrkl 22 (401)
++-|+++|+-.|||+|...|
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999887765
No 209
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=21.03 E-value=55 Score=30.33 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred EEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCC
Q 015732 272 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 310 (401)
Q Consensus 272 ~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 310 (401)
++.|+-+|||.+++.-..|. +.-=+.++-.+.|||+..
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpint 199 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPINT 199 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SSS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccch
Confidence 68899999998888766663 333455666789999853
No 210
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=20.74 E-value=1.3e+02 Score=26.55 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred EEEEEecCCcEEEEEeCCCccccCCcEEEecCCCCcCCCCCC---CCCCEEEEEEEeC
Q 015732 272 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF---MRGKLYIHFTVDF 326 (401)
Q Consensus 272 ~~~i~~ldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~---~~GdL~v~~~V~~ 326 (401)
-+-|++-+|-.|.|- -| + ++..+.|+|+-..-..+ ..||++++|++++
T Consensus 62 Aigi~t~~GvEiLiH--iG--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 62 AIGIETDEGVEILIH--IG--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred EEEEEcCCCcEEEEE--ec--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 566777788666554 35 3 56778999996542222 4799999997543
No 211
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=20.42 E-value=73 Score=30.35 Aligned_cols=19 Identities=37% Similarity=0.823 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHh-----CCcccc
Q 015732 35 EKFKELAQAYEVL-----SDPEKR 53 (401)
Q Consensus 35 ~kFk~I~~AYevL-----sd~~kR 53 (401)
.+.++||||+|+| +||..|
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQR 151 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQR 151 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccc
Confidence 4789999999998 467665
No 212
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=20.14 E-value=1.7e+02 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHh
Q 015732 318 LYIHFTVDFPESLSPDQCKMLET 340 (401)
Q Consensus 318 L~v~~~V~~P~~l~~~~~~~l~~ 340 (401)
..|++.|.+|..+++++.+.|+.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a 25 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKA 25 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 47899999999999988666543
No 213
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.09 E-value=60 Score=34.27 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=25.8
Q ss_pred eeeecCcccCCCC--ccCCeeeccCCcccceEEEEEecCCcceeEeEeeCCCCCCc
Q 015732 128 RNVICTKCKGKGS--KSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 181 (401)
Q Consensus 128 r~~~C~~C~G~G~--~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~ 181 (401)
....|+.|++.=. +......|..|+-+= .....||.|++.
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQE--------------PIPKTCPQCGSE 262 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcC--------------CCCCCCCCCCCC
Confidence 4567999976532 122346799998432 235689999876
No 214
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=20.08 E-value=3.4e+02 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEcCCCcCCCEEeccCCcCC
Q 015732 207 EVIVEKGMQNGQKITFPGEADE 228 (401)
Q Consensus 207 ~V~Ip~G~~~G~~i~~~g~G~~ 228 (401)
+..||.|+.+|++|++.|.-..
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~ 23 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLP 23 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECC
Confidence 4578999999999999987654
Done!