Citrus Sinensis ID: 015733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEccccccHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcHHHEEEEEcccccEEEEEEEcccccHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccHcHEEEcccccccHcHccHHEEcccccEEEEEEccccHHHHHcccEccccHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHcHHHcccccHHHHHHHHHHHHHHHHccHHccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkdylwqntcpmirlqSTYFIVSLVLIASMSSFILLAVIFMFqipsyefhcltfsnnfsgetqpMKWAMRLRVALHIAEALEYCTSKERALYHdlnayrivfdddvnprlscfglmknsrdgrsystnlaftppeylrtgrvtpesvMYSFGTLLLDLlsgkhippshaldlirdrniqtltdsclegqfssdeGTELVRLASRclqyeprerpnprSLVTALVTLQkdtevpshvlmgiphgaaalplsplgdaCLRMDLTAIHEILEKlgykddegaatELSFQMWTGQMQETLnskkkgdvafrhkDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDmpqealndasqaqviSPVWHMAAYLQAAALFALGKENEAQAALREASILenkksana
Flexible Loop (DISEMBL)
MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLmknsrdgrsystnlaftppeylrtgrvTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLegqfssdegtELVRLASRCLqyeprerpnprsLVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREasilenkksana
Low Complexity Region (SEG)
MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMaaylqaaalfalGKENEAQAALREASILENKKSANA
Disordered region (IsUnstruct)
***YLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF*****TELVRLASRCLQY**********LVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQM*********GDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM************QAQVISPVWHMAAYLQAAALFALGK**********************
Disordered Region (DISOPRED)
*KDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT********************************************************************************FRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAAL**************
Disordered Region (DISEMBL)
MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA
Disordered Region (DISPRO)
*KDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHV*M*I*************DACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILE*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFxxxxxxxxxxxxxxxxxxxxxKSANA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q9FHD7	487	Probable serine/threonine	no	no	0.850	0.700	0.791	1e-164
Q944A7	512	Probable serine/threonine	no	no	0.845	0.662	0.628	1e-125
Q7XJT7	465	Probable inactive recepto	no	no	0.812	0.701	0.441	6e-80
Q8H186	389	Probable receptor-like pr	no	no	0.466	0.480	0.322	4e-22
Q06548	410	Protein kinase APK1A, chl	no	no	0.411	0.402	0.358	6e-21
O48814	395	Serine/threonine-protein	no	no	0.491	0.498	0.330	2e-20
P46573	412	Protein kinase APK1B, chl	no	no	0.421	0.410	0.345	1e-19
Q9LFP7	493	Probable receptor-like pr	no	no	0.448	0.365	0.328	4e-18
Q9SFT7	414	Serine/threonine-protein	no	no	0.503	0.487	0.312	2e-17
Q9FM85	408	Probable receptor-like pr	no	no	0.441	0.433	0.306	8e-17

>sp|Q9FHD7|Y5126_ARATH Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/341 (79%), Positives = 306/341 (89%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  E+QPMKWAMRLRVALHIA+ALEYCTSK RALYHDLNAYR++FDDD NPRLSCFGLMK
Sbjct: 145 FHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ L DS LEGQFSSD+GTEL+RLASRCLQYEPRERPNP+SLV+A++ LQKD E+ SH L
Sbjct: 265 IQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           +G+P+ A    LSPLG+ACLR DLTAIHEI+EKLGYKDDEGA TELSFQMWT QMQ+TL 
Sbjct: 325 LGVPNSATTTALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLV 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
            KKKGD AFRHKDF  +IECY+QFI+VGTM SPT  AR+SL YLM+DMP+EALN+A QAQ
Sbjct: 385 FKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS 398
           VISP WH+A+YLQA AL ALG+ENEA  AL++ ++LE+K++
Sbjct: 445 VISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKRN 485

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q944A7|Y4523_ARATH Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 265/345 (76%), Gaps = 6/345 (1%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  E Q ++WAMRLRV  +IAEAL+YC+++ R LYHDLNAYR++FD+D +PRLSCFGLMK
Sbjct: 162 FHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMK 221

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLA+TPPEYLR GRVTPESV YSFGT+LLDLLSGKHIPPSHALD+IR +N
Sbjct: 222 NSRDGKSYSTNLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKN 281

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           I  L DS LEG+FS++E T +V LAS+CLQYEPRERPN + LV  L  LQ  ++VPS+V+
Sbjct: 282 IILLMDSHLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVM 341

Query: 238 MGIPHGAAA-----LPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQM 292
           +GI     A      PLSPLG+AC RMDLTAIH+IL    Y+DDEG   ELSFQ WT QM
Sbjct: 342 LGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEG-TNELSFQEWTQQM 400

Query: 293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALND 352
           ++ L+++K+GD +FR KDF+ +I+CY+QFIDVGTMVSPT F RRSL YL+ D P  AL D
Sbjct: 401 KDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRD 460

Query: 353 ASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK 397
           A QAQ + P W  A Y+Q+ AL  L    +A   L EA+ LE K+
Sbjct: 461 AMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKR 505

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7XJT7|SSP_ARATH Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1

 Score =  298 bits (762), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 152/344 (44%), Positives = 224/344 (65%), Gaps = 18/344 (5%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  + Q M W++RLRVA  +AEAL+YC +   A Y++L+AY+++FD+D +  LSCFGLMK
Sbjct: 136 FQRKYQTMDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGLMK 195

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
              + +             + TG V PE+V+Y FGT+L++LLSGK IPPSHA ++I  +N
Sbjct: 196 EINNDQ-------------ITTGSVNPENVIYRFGTVLVNLLSGKQIPPSHAPEMIHRKN 242

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           +  L D  L+G+FS DE   + +LAS+CL+YE +E PN + +V  L TLQ  TE PS+ +
Sbjct: 243 VFKLMDPYLKGKFSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEV 302

Query: 238 MGIPH----GAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQ 293
           + + +     +++  LSPLG+ACLRMDL +IH IL   GY DD+    ELSF+ W  +++
Sbjct: 303 VEMTNQEKDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKD-IIELSFEEWIQEVK 361

Query: 294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDA 353
           E  + ++ GD AF  +DF+ +I CY+QF++  ++V P+ +ARRSLSYL  D P++AL D 
Sbjct: 362 ELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDG 421

Query: 354 SQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK 397
             AQ + P W  A YLQ+ AL  L    ++   L+EA++LE KK
Sbjct: 422 MHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465

Probable inactive protein kinase that activates the YODA MAP kinase cascade, regulating the asymmetric first division, and thus embryo polarity. Acts as an adapter at the plasma membrane, possibly recruiting an activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H186|Y3545_ARATH Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 30/217 (13%)

Query: 47  YEF-HCLTFSN----NFSGETQPMKWAMRLRVALHIAEALEYCTSKE-RALYHDLNAYRI 100
           YEF H  +  N    N + + +P+ W +R++VAL  A+ L +  S   + +Y D+ A  I
Sbjct: 144 YEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNI 203

Query: 101 VFDDDVNPRLSCFGLMKNSRDG----RSYSTN-----LAFTPPEYLRTGRVTPESVMYSF 151
           + D D N +LS FGL   +RDG    +SY +        +  PEY+ TG +   S +YSF
Sbjct: 204 LLDSDFNAKLSDFGL---ARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSF 260

Query: 152 GTLLLDLLSGK----HIPPSHALDLI--------RDRNIQTLTDSCLEGQFSSDEGTELV 199
           G +LL+LL G+    H  P+   +L+          R +  + D+ L  Q+  +    L 
Sbjct: 261 GVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLA 320

Query: 200 RLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHV 236
            +A +CL +EP+ RP    +V ALV LQ     P++V
Sbjct: 321 SIAVQCLSFEPKSRPTMDQVVRALVQLQDSVVKPANV 357

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q06548|APK1A_ARATH Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 19/184 (10%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKE-RALYHDLNAYRIVFDDDVNPRLSCFGLMKNS-- 119
           QP+ W +RL+VAL  A+ L +  S E R +Y D     I+ D + N +LS FGL K+   
Sbjct: 171 QPLSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPI 230

Query: 120 RDGRSYSTNL----AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI----PPSHALD 171
            D    ST +     +  PEYL TG +T +S +YSFG +LL+LLSG+       PS   +
Sbjct: 231 GDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERN 290

Query: 172 LIR--------DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           L+          R I  + D+ L+ Q+S +E  ++  L+ RCL  E + RPN   +V+ L
Sbjct: 291 LVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHL 350

Query: 224 VTLQ 227
             +Q
Sbjct: 351 EHIQ 354

Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O48814|BIK1_ARATH Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 24/221 (10%)

Query: 35  LLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE-RALYH 93
           LL   FM Q  S E H       F    +P+ W +R+ VAL  A+ L +  S   + +Y 
Sbjct: 147 LLVYEFM-QKGSLENHLFRRGAYF----KPLPWFLRVNVALDAAKGLAFLHSDPVKVIYR 201

Query: 94  DLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SY-STNL----AFTPPEYLRTGRVTPESV 147
           D+ A  I+ D D N +LS FGL ++   G  SY ST +     +  PEY+ +G +   S 
Sbjct: 202 DIKASNILLDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSD 261

Query: 148 MYSFGTLLLDLLSGK----HIPPSHALDLI--------RDRNIQTLTDSCLEGQFSSDEG 195
           +YSFG LLL++LSGK    H  P+   +L+          R +  + D+ L+ Q+  +E 
Sbjct: 262 VYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEA 321

Query: 196 TELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHV 236
             +  +A +CL +EP+ RP    +V AL  LQ +   PS  
Sbjct: 322 VRMASVAVQCLSFEPKSRPTMDQVVRALQQLQDNLGKPSQT 362

Required to activate the resistance responses to necrotrophic pathogens. Phosphorylates FLS2 and BAK1.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P46573|APK1B_ARATH Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 19/188 (10%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERA-LYHDLNAYRIVFDDDVNPRLSCFGLMKN--S 119
           QP+ W +RL+VAL  A+ L +  + E + +Y D     I+ D + N +LS FGL K+  +
Sbjct: 172 QPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPT 231

Query: 120 RDGRSYSTNL----AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSH-- 168
            D    ST +     +  PEYL TG +T +S +YS+G +LL++LSG     K+ PP    
Sbjct: 232 GDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQK 291

Query: 169 ----ALDLIRD-RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
               A  L+ + R +  + D+ L+ Q+S +E  ++  LA RCL +E + RPN   +V+ L
Sbjct: 292 LVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHL 351

Query: 224 VTLQKDTE 231
             +Q   E
Sbjct: 352 EHIQTLNE 359

Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFP7|Y5158_ARATH Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 21/201 (10%)

Query: 47  YEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK--ERALYHDLNAYRIVFD 103
           YEF    +  N+    + P+ W++R+++AL  A+ L +   +  +  +Y D     I+ D
Sbjct: 225 YEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLD 284

Query: 104 DDVNPRLSCFGLMKNSRD-GRSY-STNL----AFTPPEYLRTGRVTPESVMYSFGTLLLD 157
            D N +LS FGL K++ D G+++ ST +     +  PEY+ TG +T +S +YSFG +LL+
Sbjct: 285 ADYNAKLSDFGLAKDAPDEGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLE 344

Query: 158 LLSG-----KHIPPS-HAL------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRC 205
           +L+G     K+ P   H L       L+  R    L D  LEG FS     ++ +LA++C
Sbjct: 345 MLTGRRSMDKNRPNGEHNLVEWARPHLLDKRRFYRLLDPRLEGHFSIKGAQKVTQLAAQC 404

Query: 206 LQYEPRERPNPRSLVTALVTL 226
           L  +P+ RP    +V AL  L
Sbjct: 405 LSRDPKIRPKMSDVVEALKPL 425

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SFT7|Y3707_ARATH Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 35/237 (14%)

Query: 12  MIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRL 71
           M+ L     +V+L+   +     LL   +M +  S E H L    + + +  P+ W  R+
Sbjct: 127 MLSLLHHKHLVNLIGYCADGDQRLLVYEYMSR-GSLEDHLL----DLTPDQIPLDWDTRI 181

Query: 72  RVALHIAEALEYCTSKER--ALYHDLNAYRIVFDDDVNPRLSCFGLMKNS--RDGRSYST 127
           R+AL  A  LEY   K     +Y DL A  I+ D + N +LS FGL K     D +  S+
Sbjct: 182 RIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPVGDKQHVSS 241

Query: 128 NL----AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLT- 182
            +     +  PEY RTG++T +S +YSFG +LL+L++G+ +     +D  R ++ Q L  
Sbjct: 242 RVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLLELITGRRV-----IDTTRPKDEQNLVT 296

Query: 183 ----------------DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                           D  LEG F      + V +A+ CLQ E   RP    +VTAL
Sbjct: 297 WAQPVFKEPSRFPELADPSLEGVFPEKALNQAVAVAAMCLQEEATVRPLMSDVVTAL 353

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FM85|Y5564_ARATH Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 19/196 (9%)

Query: 55  SNNFSGETQPMKWAMRLRVALHIAEALEYC-TSKERALYHDLNAYRIVFDDDVNPRLSCF 113
           +N FS    P+ WA+R+++A   A+ L +   +K+  +Y D     I+ D D N +LS F
Sbjct: 169 NNLFSRVLLPLSWAIRMKIAFGAAKGLAFLHEAKKPVIYRDFKTSNILLDMDYNAKLSDF 228

Query: 114 GLMKNS--RDGRSYSTNL----AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK----H 163
           GL K+    D    ST +     +  PEY+ TG +TP S +YSFG +LL+LL+G+     
Sbjct: 229 GLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPGSDVYSFGVVLLELLTGRKSLDK 288

Query: 164 IPPSHALDLI--------RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
             P+   +LI          + +  + D  +  ++      +   LA  CL   P+ RP 
Sbjct: 289 SRPTREQNLIDWALPLLKEKKKVLNIVDPKMNCEYPVKAVQKAAMLAYHCLNRNPKARPL 348

Query: 216 PRSLVTALVTLQKDTE 231
            R +V +L  LQ   E
Sbjct: 349 MRDIVDSLEPLQATEE 364

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
225426412	488	PREDICTED: probable serine/threonine-pro	0.857	0.704	0.866	1e-179
224058519	488	predicted protein [Populus trichocarpa]	0.857	0.704	0.848	1e-174
449452322	486	PREDICTED: probable serine/threonine-pro	0.852	0.703	0.853	1e-174
224071868	487	predicted protein [Populus trichocarpa]	0.855	0.704	0.840	1e-171
225454188	491	PREDICTED: probable serine/threonine-pro	0.850	0.694	0.832	1e-170
357520453	353	Protein kinase-like protein [Medicago tr	0.855	0.971	0.819	1e-170
357520451	495	Protein kinase-like protein [Medicago tr	0.855	0.692	0.819	1e-170
356513393	489	PREDICTED: probable serine/threonine-pro	0.855	0.701	0.813	1e-169
297840147	487	kinase family protein [Arabidopsis lyrat	0.850	0.700	0.818	1e-168
240254311	487	Protein kinase protein with tetratricope	0.850	0.700	0.818	1e-168

>gi|225426412|ref|XP_002270065.1| PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera] gi|297742525|emb|CBI34674.3| unnamed protein product [Vitis vinifera]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/344 (86%), Positives = 320/344 (93%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPMKWAMRLRVAL++A+ALEYCTSK RALYHDLNAYRIVFDDD +PRLSCFG+MK
Sbjct: 145 FHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRIVFDDDGDPRLSCFGMMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ LTDSCLEGQFSSD+GTELVRLASRCLQYEPRERPNP+SLV AL+ LQK+TEVPSHVL
Sbjct: 265 IQMLTDSCLEGQFSSDDGTELVRLASRCLQYEPRERPNPKSLVAALIPLQKETEVPSHVL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MG+P   A LPLSPLG+ACLRMDLTAIHEILEKLGYKDDEGA TELSFQMWT QMQETLN
Sbjct: 325 MGMPQSGATLPLSPLGEACLRMDLTAIHEILEKLGYKDDEGATTELSFQMWTNQMQETLN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGDVAFRHKDFRA+IECYTQFIDVGTMVSPT FARRSL YLMSDMPQEALNDA QAQ
Sbjct: 385 SKKKGDVAFRHKDFRAAIECYTQFIDVGTMVSPTVFARRSLCYLMSDMPQEALNDAVQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
           VISP+WH+A+YLQA AL ALG+ENE++  L+E S+LE KK+  A
Sbjct: 445 VISPIWHIASYLQAVALSALGRENESEVTLKEGSVLEEKKNKTA 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058519|ref|XP_002299534.1| predicted protein [Populus trichocarpa] gi|222846792|gb|EEE84339.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/344 (84%), Positives = 318/344 (92%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPMKWAMRLRVALH+A+ALEYC SK RALYHDLNAYR+VFDD+ NPRLSCFGLMK
Sbjct: 145 FHWETQPMKWAMRLRVALHLAQALEYCASKGRALYHDLNAYRVVFDDEGNPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NS DG+SYSTNLAFTPPEYLRTGRVT ESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSIDGKSYSTNLAFTPPEYLRTGRVTAESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ L+DSCLEGQF++D+GTELVRLASRCLQYEPRERPNP+SLV AL+ LQKDTEVPSH L
Sbjct: 265 IQMLSDSCLEGQFANDDGTELVRLASRCLQYEPRERPNPKSLVAALIPLQKDTEVPSHEL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGI  GAAALPLSPLG+ACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWT QMQE LN
Sbjct: 325 MGIQDGAAALPLSPLGEACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTNQMQEILN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGDVAFRHKDFRA+ E Y+QFI++GTMVSPT  ARRSLSYL+SDMPQEALNDA QAQ
Sbjct: 385 SKKKGDVAFRHKDFRAATEFYSQFINIGTMVSPTVHARRSLSYLLSDMPQEALNDALQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
            I P+WH+A+YLQAAAL  +GKENEA+AAL+EAS LENK++ NA
Sbjct: 445 AIFPIWHIASYLQAAALLTMGKENEAKAALKEASTLENKRNTNA 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452322|ref|XP_004143908.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus] gi|449495800|ref|XP_004159948.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/342 (85%), Positives = 317/342 (92%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  E QPMKW+MRLRVALH+A+ALEYCTSK RALYHDLNAYRIVFDD+ NPRLSCFGLMK
Sbjct: 143 FHWENQPMKWSMRLRVALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMK 202

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDGRSYSTNLAFTPPEYLRTG +TPESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 203 NSRDGRSYSTNLAFTPPEYLRTGGITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 262

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ LTDSCLEGQFS+DEGTELVRLASRCLQYEPRERPN +SLVTAL+ LQKD EVPSHVL
Sbjct: 263 IQMLTDSCLEGQFSNDEGTELVRLASRCLQYEPRERPNTKSLVTALIPLQKDLEVPSHVL 322

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP  AAAL LSPLG+A LRMDLTAIHE+LE +GYKDDEGAATELSFQMWT QMQ+TL 
Sbjct: 323 MGIPQDAAALNLSPLGEASLRMDLTAIHEVLEMIGYKDDEGAATELSFQMWTNQMQDTLT 382

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGDVAFR K+FR +IECYTQFIDVGTMVSPT FARRSLSYL+S+MP+EALNDA QAQ
Sbjct: 383 SKKKGDVAFRQKEFRTAIECYTQFIDVGTMVSPTVFARRSLSYLISNMPEEALNDAVQAQ 442

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSA 399
           VISP+WH+A+YLQA+ALF LGKENEA  ALRE S+LE+KK+A
Sbjct: 443 VISPLWHVASYLQASALFTLGKENEAHIALREGSVLESKKNA 484

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071868|ref|XP_002303586.1| predicted protein [Populus trichocarpa] gi|222841018|gb|EEE78565.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/344 (84%), Positives = 314/344 (91%), Gaps = 1/344 (0%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ET+PMKWAMRLRVALH+A+ALEYCTSK RALYHDLNAYRIVFDD+ NPRLSCFGLMK
Sbjct: 145 FHWETKPMKWAMRLRVALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           N RDG+SYSTNLAFTPPEYLRTGRV PESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NRRDGKSYSTNLAFTPPEYLRTGRVIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ LTDSCLEGQF++D+GTELVRLASRCLQYEPRERPN +SLV AL+ LQKDTEVPSH L
Sbjct: 265 IQMLTDSCLEGQFTNDDGTELVRLASRCLQYEPRERPNSKSLVAALIPLQKDTEVPSHEL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGI  GAAALPLSPLG+ACLRMDLTAIHEILEKLGYKDDEG ATELSFQMWT Q QETLN
Sbjct: 325 MGIQDGAAALPLSPLGEACLRMDLTAIHEILEKLGYKDDEGTATELSFQMWTNQKQETLN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           + KKGDVAF+HKDF A+ E Y+QFIDVG MVSPT  ARRSLSYLM+++PQEALNDA QAQ
Sbjct: 385 T-KKGDVAFQHKDFIAATELYSQFIDVGNMVSPTVHARRSLSYLMTNLPQEALNDALQAQ 443

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
            ISP+WH+A+YLQA ALF LG+ENEAQAAL+E S LENK+S NA
Sbjct: 444 AISPIWHIASYLQAVALFVLGRENEAQAALKEGSTLENKRSTNA 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454188|ref|XP_002272416.1| PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera] gi|297745267|emb|CBI40347.3| unnamed protein product [Vitis vinifera]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/341 (83%), Positives = 310/341 (90%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPMKWAMRLRV LH+A+ALEYCT + RALYHDLNAYRI+FD+D NPRLSCFGLMK
Sbjct: 145 FHWETQPMKWAMRLRVVLHLAQALEYCTGRGRALYHDLNAYRILFDEDGNPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           +Q LTDSCLEGQF++D+GTELVRLASRCLQYEPRERPNP+SLV AL  LQK+TEVPSHVL
Sbjct: 265 LQMLTDSCLEGQFTNDDGTELVRLASRCLQYEPRERPNPKSLVAALTPLQKETEVPSHVL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIPH A+  PLSPLG+AC RMDLTAIHEILE +GYKDDEG   ELSFQMWT QMQETLN
Sbjct: 325 MGIPHSASFSPLSPLGEACSRMDLTAIHEILESVGYKDDEGMTNELSFQMWTDQMQETLN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGD AFR KDFRA+I+CYTQFIDVGTMVSPT  ARRSL YLMSDMPQEALNDA QAQ
Sbjct: 385 SKKKGDAAFRQKDFRAAIDCYTQFIDVGTMVSPTVCARRSLCYLMSDMPQEALNDAMQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS 398
           VISPVWH+A+YLQAAAL  LG ENEAQAAL++ + LE +++
Sbjct: 445 VISPVWHIASYLQAAALTGLGMENEAQAALKDGTTLEAQRN 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520453|ref|XP_003630515.1| Protein kinase-like protein [Medicago truncatula] gi|355524537|gb|AET04991.1| Protein kinase-like protein [Medicago truncatula]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 315/343 (91%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPMKWAMRLRVAL++A+ALEYCTSK RALYHDLNAYR++FDDD NP+LSCFGLMK
Sbjct: 11  FHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDDFNPKLSCFGLMK 70

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESV YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 71  NSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRN 130

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           +Q+LTDSCLEGQFS DEGTELVRLASRCLQ EPRERPNP+SLVTAL+ LQKD+EVPSHVL
Sbjct: 131 LQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDSEVPSHVL 190

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP G+AA PL+PLG+ACLRMDLT+IHE+LEK+GYKDDEGAATELSFQMWT QMQ+T++
Sbjct: 191 MGIPDGSAAFPLTPLGEACLRMDLTSIHEVLEKIGYKDDEGAATELSFQMWTNQMQQTID 250

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGD AFR KDF+ +IE YTQFI+VG+MVSPT +ARRSLSYL+++MP EAL DA QAQ
Sbjct: 251 SKKKGDSAFRVKDFKTAIEGYTQFIEVGSMVSPTIYARRSLSYLINNMPNEALGDAMQAQ 310

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSAN 400
           +ISPVW++A YLQA AL ALGKEN+AQ AL+E S LE K S N
Sbjct: 311 MISPVWYIAFYLQAVALLALGKENDAQVALKEGSSLEAKNSTN 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520451|ref|XP_003630514.1| Protein kinase-like protein [Medicago truncatula] gi|355524536|gb|AET04990.1| Protein kinase-like protein [Medicago truncatula]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 315/343 (91%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPMKWAMRLRVAL++A+ALEYCTSK RALYHDLNAYR++FDDD NP+LSCFGLMK
Sbjct: 153 FHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDDFNPKLSCFGLMK 212

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESV YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 213 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRN 272

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           +Q+LTDSCLEGQFS DEGTELVRLASRCLQ EPRERPNP+SLVTAL+ LQKD+EVPSHVL
Sbjct: 273 LQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDSEVPSHVL 332

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP G+AA PL+PLG+ACLRMDLT+IHE+LEK+GYKDDEGAATELSFQMWT QMQ+T++
Sbjct: 333 MGIPDGSAAFPLTPLGEACLRMDLTSIHEVLEKIGYKDDEGAATELSFQMWTNQMQQTID 392

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGD AFR KDF+ +IE YTQFI+VG+MVSPT +ARRSLSYL+++MP EAL DA QAQ
Sbjct: 393 SKKKGDSAFRVKDFKTAIEGYTQFIEVGSMVSPTIYARRSLSYLINNMPNEALGDAMQAQ 452

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSAN 400
           +ISPVW++A YLQA AL ALGKEN+AQ AL+E S LE K S N
Sbjct: 453 MISPVWYIAFYLQAVALLALGKENDAQVALKEGSSLEAKNSTN 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513393|ref|XP_003525398.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Glycine max]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/343 (81%), Positives = 311/343 (90%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  ETQPM+WAMR+RVAL +A+ALEYCTSK RALYHDLNAYR+++DDD NPRLSCFGLMK
Sbjct: 147 FHWETQPMRWAMRMRVALCLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMK 206

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDGRSYSTNLAFTPPEYLRTGRVTPESV YSFGTLLLDLLSGKHIPPSHALDLIRD+N
Sbjct: 207 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKN 266

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           +Q L+DSCLEG+ ++D+GTELVRLASRCLQ EPRERPNP+SLV AL+ LQKD+EVPSHVL
Sbjct: 267 LQMLSDSCLEGELTNDDGTELVRLASRCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVL 326

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP G AA PLSPLG+ACLRMDLTA+HE++EK+GYKDDEGAATELSFQMWT QMQETLN
Sbjct: 327 MGIPDGTAAFPLSPLGEACLRMDLTALHEVMEKIGYKDDEGAATELSFQMWTNQMQETLN 386

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
           SKKKGD AFRHKDF+ +I+ YT FIDVGTMVSPT + RRSL YLMS+MP EALNDA QAQ
Sbjct: 387 SKKKGDAAFRHKDFKTAIDSYTMFIDVGTMVSPTVYVRRSLCYLMSNMPDEALNDAMQAQ 446

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSAN 400
           VISPVW++A YLQA AL ALGKEN+AQ AL+E S LE KK+ N
Sbjct: 447 VISPVWYIAFYLQAVALLALGKENDAQVALKEGSSLETKKNTN 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840147|ref|XP_002887955.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333796|gb|EFH64214.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/341 (81%), Positives = 311/341 (91%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  E+QPMKWAMRLRVALHIA+ALEYCT K RALYHDLNAYR++FDDD NPRLSCFGLMK
Sbjct: 145 FHWESQPMKWAMRLRVALHIAQALEYCTGKGRALYHDLNAYRVLFDDDSNPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESVMYS+GTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSYGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ L DSCLEGQFSSD+GTEL+RLASRCLQYEPRERPNP+SLVTA++ LQKD E PSH L
Sbjct: 265 IQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLETPSHQL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP  A+  PLSPLG+ACLR DLTAIHEILEKL YKDDEGAATELSFQMWT QMQ++LN
Sbjct: 325 MGIPSSASTTPLSPLGEACLRTDLTAIHEILEKLSYKDDEGAATELSFQMWTNQMQDSLN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
            KKKGDVAFRHK+F  +I+CY+QFI+ GTMVSPT +ARRSL YLM++MPQEALNDA QAQ
Sbjct: 385 FKKKGDVAFRHKEFANAIDCYSQFIEGGTMVSPTVYARRSLCYLMNEMPQEALNDAMQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS 398
           VISP WH+A+YLQA AL ALG+ENEA AAL++ S+LE+K++
Sbjct: 445 VISPAWHIASYLQAVALSALGQENEAHAALKDGSMLESKRN 485

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254311|ref|NP_176539.4| Protein kinase protein with tetratricopeptide repeat domain [Arabidopsis thaliana] gi|332195985|gb|AEE34106.1| Protein kinase protein with tetratricopeptide repeat domain [Arabidopsis thaliana]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/341 (81%), Positives = 311/341 (91%)

Query: 58  FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
           F  E+QPMKWAMRLRVALHIA+ALEYCT K RALYHDLNAYR++FDDD NPRLSCFGLMK
Sbjct: 145 FHWESQPMKWAMRLRVALHIAQALEYCTGKGRALYHDLNAYRVLFDDDSNPRLSCFGLMK 204

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           NSRDG+SYSTNLAFTPPEYLRTGRVTPESVMYS+GTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct: 205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSYGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
           IQ L DSCLEGQFSSD+GTEL+RLASRCLQYEPRERPNP+SLVTA++ LQKD E PSH L
Sbjct: 265 IQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLETPSHQL 324

Query: 238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
           MGIP  A+  PLSPLG+ACLR DLTAIHEILEKL YKDDEGAATELSFQMWT QMQ++LN
Sbjct: 325 MGIPSSASTTPLSPLGEACLRTDLTAIHEILEKLSYKDDEGAATELSFQMWTNQMQDSLN 384

Query: 298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
            KKKGDVAFRHK+F  +I+CY+QFI+ GTMVSPT +ARRSL YLM++MPQEALNDA QAQ
Sbjct: 385 FKKKGDVAFRHKEFANAIDCYSQFIEGGTMVSPTVYARRSLCYLMNEMPQEALNDAMQAQ 444

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS 398
           VISP WH+A+YLQA AL ALG+ENEA AAL++ S+LE+K++
Sbjct: 445 VISPAWHIASYLQAVALSALGQENEAHAALKDGSMLESKRN 485

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2031279	487	BSK7 "brassinosteroid-signalin	0.850	0.700	0.791	9e-148
TAIR|locus:2155115	487	BSK8 "brassinosteroid-signalin	0.850	0.700	0.765	2.3e-142
TAIR|locus:2127118	489	BSK3 "brassinosteroid-signalin	0.842	0.691	0.764	6.5e-138
TAIR|locus:2154538	489	BSK5 "brassinosteroid-signalin	0.867	0.711	0.705	1.2e-131
TAIR|locus:2084475	490	BSK6 "brassinosteroid-signalin	0.850	0.695	0.705	1.2e-127
TAIR|locus:2198160	483	BSK4 "brassinosteroid-signalin	0.832	0.691	0.692	1.1e-121
TAIR|locus:2122058	512	BSK1 "brassinosteroid-signalin	0.845	0.662	0.611	1e-109
TAIR|locus:2142315	489	BSK2 "brassinosteroid-signalin	0.860	0.705	0.566	3.3e-102
TAIR|locus:2083499	477	BSK9 "brassinosteroid-signalin	0.840	0.706	0.575	2.9e-96
TAIR|locus:2150074	499	BSK10 "brassinosteroid-signali	0.840	0.675	0.544	3e-92

TAIR|locus:2031279 BSK7 "brassinosteroid-signaling kinase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 270/341 (79%), Positives = 301/341 (88%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E+QPMKWAMRLRVALHIA+ALEYCT K RALYHDLNAYR++FDDD NPRLSCFGLMK
Sbjct:   145 FHWESQPMKWAMRLRVALHIAQALEYCTGKGRALYHDLNAYRVLFDDDSNPRLSCFGLMK 204

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLAFTPPEYLRTGRVTPESVMYS+GTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct:   205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSYGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
             IQ L DSCLEGQFSSD+GTEL+RLASRCLQYEPRERPNP+SLVTA++ LQKD E PSH L
Sbjct:   265 IQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLETPSHQL 324

Query:   238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
             MGIP  A+  PLSPLG+ACLR DLTAIHEILEKL YKDDEGAATELSFQMWT QMQ++LN
Sbjct:   325 MGIPSSASTTPLSPLGEACLRTDLTAIHEILEKLSYKDDEGAATELSFQMWTNQMQDSLN 384

Query:   298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
              KKKGDVAFRHK+F  +I+CY+QFI+ GTMVSPT +ARRSL YLM++MPQEALNDA QAQ
Sbjct:   385 FKKKGDVAFRHKEFANAIDCYSQFIEGGTMVSPTVYARRSLCYLMNEMPQEALNDAMQAQ 444

Query:   358 VISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKKS 398
             VISP WH+            G+ENEA AAL++ S+LE+K++
Sbjct:   445 VISPAWHIASYLQAVALSALGQENEAHAALKDGSMLESKRN 485

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2155115 BSK8 "brassinosteroid-signaling kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
 Identities = 261/341 (76%), Positives = 296/341 (86%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E+QPMKWAMRLRVALHIA+ALEYCTSK RALYHDLNAYR++FDDD NPRLSCFGLMK
Sbjct:   145 FHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMK 204

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLAFTPPEYLRTGRVTPESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct:   205 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 264

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
             IQ L DS LEGQFSSD+GTEL+RLASRCLQYEPRERPNP+SLV+A++ LQKD E+ SH L
Sbjct:   265 IQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQL 324

Query:   238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
             +G+P+ A    LSPLG+ACLR DLTAIHEI+EKLGYKDDEGA TELSFQMWT QMQ+TL 
Sbjct:   325 LGVPNSATTTALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLV 384

Query:   298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
              KKKGD AFRHKDF  +IECY+QFI+VGTM SPT  AR+SL YLM+DMP+EALN+A QAQ
Sbjct:   385 FKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQ 444

Query:   358 VISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKKS 398
             VISP WH+            G+ENEA  AL++ ++LE+K++
Sbjct:   445 VISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKRN 485

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2127118 BSK3 "brassinosteroid-signaling kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1350 (480.3 bits), Expect = 6.5e-138, P = 6.5e-138
 Identities = 259/339 (76%), Positives = 286/339 (84%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  ETQPMKW MRLRV L++A+ALEYCTSK R LYHDLNAYR++FD++ NPRLS FGLMK
Sbjct:   144 FHWETQPMKWTMRLRVVLYLAQALEYCTSKGRTLYHDLNAYRVLFDEECNPRLSTFGLMK 203

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLAFTPPEYLRTGR+TPESV+YSFGTLLLDLLSGKHIPPSHALDLIRDRN
Sbjct:   204 NSRDGKSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRN 263

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
             +QTLTDSCL+GQFS  +GTELVRLASRCLQYE RERPN +SLVTAL  LQK+TEV SHVL
Sbjct:   264 LQTLTDSCLDGQFSDSDGTELVRLASRCLQYEARERPNTKSLVTALTPLQKETEVLSHVL 323

Query:   238 MGIPHGAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLN 297
             MG+PH  +  PLSPLG+AC R DLTA+ EILEKLGYKDDEG   ELSF MWT QMQE+LN
Sbjct:   324 MGLPHSGSVSPLSPLGEACSRRDLTAMLEILEKLGYKDDEGVTNELSFHMWTDQMQESLN 383

Query:   298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ 357
             SKKKGDVAFR KDFR +IECYTQFID G M+SPT  ARRSL YLMSDMP+EAL+DA QAQ
Sbjct:   384 SKKKGDVAFRQKDFREAIECYTQFID-GGMISPTVCARRSLCYLMSDMPKEALDDAIQAQ 442

Query:   358 VISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENK 396
             VISPVWH+            G E E+Q AL+E S LE K
Sbjct:   443 VISPVWHVASYLQSASLGILGMEKESQIALKEGSNLEAK 481

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2154538 BSK5 "brassinosteroid-signaling kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 249/353 (70%), Positives = 288/353 (81%)

Query:    53 TFSNN-FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
             T S + F  ++QPMKW+MRLRVAL++A+ALEYC+SK RALYHDLNAYRI+FD D NPRLS
Sbjct:   135 TLSKHLFHWDSQPMKWSMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQDGNPRLS 194

Query:   112 CFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALD 171
             CFGLMKNSRDG+SYSTNLAFTPPEYLRTGRV PESV+YSFGTLLLDLLSGKHIPPSHALD
Sbjct:   195 CFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHALD 254

Query:   172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE 231
             LIR +N   L DSCL+G FS+D+GT+LVRLASRCLQYE RERPN +SLV++L  LQK+T+
Sbjct:   255 LIRGKNFLMLMDSCLDGHFSNDDGTDLVRLASRCLQYEARERPNVKSLVSSLAPLQKETD 314

Query:   232 VPSHVLMGIPHGAAA----LPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQM 287
             +PSHVLMGIPHGAA+      L+PLGDAC R DLTAIHEILEK+GYKDDEG A ELSFQ+
Sbjct:   315 IPSHVLMGIPHGAASPKETTSLTPLGDACSRHDLTAIHEILEKVGYKDDEGVANELSFQV 374

Query:   288 WTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQ 347
             WT Q+QETLNSKK+GD AF+ KDF  ++ECYTQFI+ GTMVSPT FARR L YLMS+MPQ
Sbjct:   375 WTDQIQETLNSKKQGDAAFKGKDFVTAVECYTQFIEDGTMVSPTVFARRCLCYLMSNMPQ 434

Query:   348 EALNDASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKKSAN 400
             EAL DA QAQV+SP W              G + +A   L++ + LE KK  N
Sbjct:   435 EALGDAMQAQVVSPEWPTAFYLQAAALFSLGMDKDACETLKDGTSLEAKKHNN 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084475 BSK6 "brassinosteroid-signaling kinase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 244/346 (70%), Positives = 281/346 (81%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E  PMKWAMRLRVAL +A+ALEYC++K RALYHDLNAYR++FD D NPRLSCFGLMK
Sbjct:   142 FHWENNPMKWAMRLRVALCLAQALEYCSNKGRALYHDLNAYRVLFDKDGNPRLSCFGLMK 201

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLAFTPPEYLRTGRVTPESV++SFGT+LLDL+SGKHIPPSHALDLIR +N
Sbjct:   202 NSRDGKSYSTNLAFTPPEYLRTGRVTPESVVFSFGTVLLDLMSGKHIPPSHALDLIRGKN 261

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
                L DS LEG FS+++GTELVRLA+RCLQYE RERPN +SLVT+LVTLQK+++V S+VL
Sbjct:   262 CAMLMDSALEGHFSNEDGTELVRLATRCLQYEARERPNVKSLVTSLVTLQKESDVASYVL 321

Query:   238 MGIPHGAAA-----LPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQM 292
             MGIPH   A     L L+P GDACLR+DLTAI EIL K+GYKDDEG A ELSFQMWT QM
Sbjct:   322 MGIPHETEAEEESPLSLTPFGDACLRVDLTAIQEILSKIGYKDDEGIANELSFQMWTNQM 381

Query:   293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALND 352
             QE+LNSKK+GD+AFR KDF  +++CYTQFID GTMVSPT  ARR LSYLM+D  QEAL D
Sbjct:   382 QESLNSKKQGDLAFRSKDFTTAVDCYTQFIDGGTMVSPTVHARRCLSYLMNDNAQEALTD 441

Query:   353 ASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKKS 398
             A QAQV+SP W              G E +AQ AL++ + LE KKS
Sbjct:   442 ALQAQVVSPDWPTALYLQAACLFKLGMEADAQQALKDGTTLEAKKS 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2198160 BSK4 "brassinosteroid-signaling kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 236/341 (69%), Positives = 275/341 (80%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  +T+PMKWAMRLRVAL+I+EALEYC++    LYHDLNAYR++FD++ NPRLS FGLMK
Sbjct:   142 FHWDTEPMKWAMRLRVALYISEALEYCSNNGHTLYHDLNAYRVLFDEECNPRLSTFGLMK 201

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLAFTPPEYLRTGR+T ESV+YSFGTLLLDLL+GKHIPPSHALDLIRDRN
Sbjct:   202 NSRDGKSYSTNLAFTPPEYLRTGRITAESVIYSFGTLLLDLLTGKHIPPSHALDLIRDRN 261

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
             +QTLTDSCLEGQFS  +GTELVRL S CLQYE RERPN +SLVTAL++LQKDTEV SHVL
Sbjct:   262 LQTLTDSCLEGQFSDSDGTELVRLTSCCLQYEARERPNIKSLVTALISLQKDTEVLSHVL 321

Query:   238 MGIPH-GAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETL 296
             MG+P  G  A P SP  +AC   DLT++ EILEK+GYKDDE    +LSF MWT QMQE +
Sbjct:   322 MGLPQSGTFASPPSPFAEACSGKDLTSMVEILEKIGYKDDE----DLSF-MWTEQMQEAI 376

Query:   297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQA 356
             NSKKKGD+AFR KDF  +IE YTQF+D+G M+S T   RRS SYLMS+M +EAL+DA +A
Sbjct:   377 NSKKKGDIAFRRKDFSEAIEFYTQFLDLG-MISATVLVRRSQSYLMSNMAKEALDDAMKA 435

Query:   357 QVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKK 397
             Q ISPVW++            G E E+Q AL E SILE +K
Sbjct:   436 QGISPVWYVALYLQSAALSVLGMEKESQIALTEGSILEARK 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2122058 BSK1 "brassinosteroid-signaling kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 211/345 (61%), Positives = 257/345 (74%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E Q ++WAMRLRV  +IAEAL+YC+++ R LYHDLNAYR++FD+D +PRLSCFGLMK
Sbjct:   162 FHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMK 221

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NSRDG+SYSTNLA+TPPEYLR GRVTPESV YSFGT+LLDLLSGKHIPPSHALD+IR +N
Sbjct:   222 NSRDGKSYSTNLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKN 281

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVL 237
             I  L DS LEG+FS++E T +V LAS+CLQYEPRERPN + LV  L  LQ  ++VPS+V+
Sbjct:   282 IILLMDSHLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVM 341

Query:   238 MGIPHGAAA-----LPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQM 292
             +GI     A      PLSPLG+AC RMDLTAIH+IL    Y+DDEG   ELSFQ WT QM
Sbjct:   342 LGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGT-NELSFQEWTQQM 400

Query:   293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALND 352
             ++ L+++K+GD +FR KDF+ +I+CY+QFIDVGTMVSPT F RRSL YL+ D P  AL D
Sbjct:   401 KDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRD 460

Query:   353 ASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKK 397
             A QAQ + P W                  +A   L EA+ LE K+
Sbjct:   461 AMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKR 505

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2142315 BSK2 "brassinosteroid-signaling kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 197/348 (56%), Positives = 253/348 (72%)

Query:    53 TFSNN-FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
             T S + F  E QP+ W MR+R+A +IAEAL+YC  + R +YHDLNAYRI+FD++ +PRLS
Sbjct:   136 TLSKHLFHWEKQPLPWDMRVRIADYIAEALDYCNIENRKIYHDLNAYRILFDEEGDPRLS 195

Query:   112 CFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALD 171
              FGLMKNSRDG+SYSTNLA+TPPE+LRTGRV PESV++S+GT+LLDLLSGKHIPPSHALD
Sbjct:   196 TFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIFSYGTILLDLLSGKHIPPSHALD 255

Query:   172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE 231
             +IR +N   L DS LEGQ+++D+ T+LV LAS+CLQ E ++RP+ + L++A+  LQK  E
Sbjct:   256 IIRGKNALLLMDSSLEGQYANDDATKLVDLASKCLQSEAKDRPDTKFLLSAVAPLQKQEE 315

Query:   232 VPSHVLMGIPHGAAALP--LSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSFQMWT 289
             V SHVLMG+P     LP  LSPLG AC +MDL   H+IL K GY+D+EGA  ELSFQ WT
Sbjct:   316 VASHVLMGLPKNTVILPTMLSPLGKACAKMDLATFHDILLKTGYRDEEGAENELSFQEWT 375

Query:   290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEA 349
              Q+QE LN+KK GD+AFR KDF+ SIE Y++ + +  + S T FARR+ SYLM+D  + A
Sbjct:   376 QQVQEMLNTKKFGDIAFRDKDFKNSIEYYSKLVGMMPVPSATVFARRAFSYLMTDQQELA 435

Query:   350 LNDASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILENKK 397
             L DA QAQV  P W              G E +AQ  L + +  + K+
Sbjct:   436 LRDAMQAQVCIPEWPTAFYLQALALSKLGMETDAQDMLNDGAAYDAKR 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

TAIR|locus:2083499 BSK9 "brassinosteroid-signaling kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 199/346 (57%), Positives = 240/346 (69%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E +PMKW MRLRVALH A ALEYC      LYHDLN YRI+FD   NPRLSCFGLMK
Sbjct:   130 FHWEKRPMKWEMRLRVALHTATALEYCNDWGIDLYHDLNTYRILFDKVGNPRLSCFGLMK 189

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
              SR+G+SYSTNLAF PPEYLR G V PESV +SFGTLLLDL+SG+HIPP+HALDL R +N
Sbjct:   190 CSREGKSYSTNLAFAPPEYLRLGTVIPESVTFSFGTLLLDLMSGRHIPPNHALDLFRGKN 249

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV-PSHV 236
                L DS L+GQFS ++ TEL+ LASRCL+ EP ERP+ + L++AL  L+K  E+ P+  
Sbjct:   250 YLVLMDSALDGQFSDEDRTELIHLASRCLRPEPDERPSIKFLMSALSRLEKRAELWPNVK 309

Query:   237 LMGIPHGAAA-------LPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAAT-ELSFQMW 288
                IP  +         LPL+P G+AC R+DL+ +HE+LEKLGY +D+   T E SFQMW
Sbjct:   310 EENIPTPSYTEPATKEPLPLTPFGEACWRVDLSGMHELLEKLGYGEDDVVVTNEFSFQMW 369

Query:   289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQE 348
             TGQMQE ++ KK GD AFR KDF  +IE YT+F+    +VSPT  ARR L YLMSDM +E
Sbjct:   370 TGQMQENMDYKKHGDAAFRAKDFETAIEFYTEFMSGAPVVSPTVLARRCLCYLMSDMFRE 429

Query:   349 ALNDASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILE 394
             AL+DA Q QV SP + +            G E EA+ ALR  S LE
Sbjct:   430 ALSDAMQTQVASPEFSIALYLQAACLLKLGMEAEAKEALRHGSSLE 475

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2150074 BSK10 "brassinosteroid-signaling kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 190/349 (54%), Positives = 231/349 (66%)

Query:    58 FSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK 117
             F  E +PMKW MRL+VALH A ALEYC  K   LYHDLN YRI+FD    P+LSCFGLMK
Sbjct:   149 FHWEKRPMKWEMRLKVALHTARALEYCNDKGIDLYHDLNPYRIMFDKTGIPKLSCFGLMK 208

Query:   118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
             NS +G+ YSTNLAF PPEYLR G V  ESV +SFGTLLLDL+SG+HIPP+HALDL R +N
Sbjct:   209 NSHEGKIYSTNLAFAPPEYLRLGTVIAESVTFSFGTLLLDLMSGRHIPPNHALDLFRGKN 268

Query:   178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV-PSHV 236
                L DS L+GQFS ++ TEL+ +ASRC + EP ERP+ + L   L  LQK  ++ P +V
Sbjct:   269 YLVLMDSALDGQFSDEDRTELIHVASRCFKTEPEERPSIKFLKATLSRLQKRAKLCPINV 328

Query:   237 LM-------GIPH----GAAALPLSPLGDACLRMDLTAIHEILEKLGYKDDEGAATELSF 285
                       +P        +L L+P GDAC R DL++IHE+LEKLGY++D G   E SF
Sbjct:   329 KRPMSPPSKNLPEKTKPATESLKLTPFGDACSRADLSSIHELLEKLGYEEDNGVGNEFSF 388

Query:   286 QMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM 345
             QMWTG+MQE ++ KK GD AF  KDF  +IE YT+F+     VSPT  ARR L YLM++M
Sbjct:   389 QMWTGEMQENMDYKKHGDAAFLAKDFDTAIEFYTEFMTGAPTVSPTVLARRCLCYLMTEM 448

Query:   346 PQEALNDASQAQVISPVWHMXXXXXXXXXXXXGKENEAQAALREASILE 394
               EAL+DA QAQV SP W +              E EA+ ALR  S LE
Sbjct:   449 FSEALSDAMQAQVASPEWPIPLYLQAACLFKLEMEAEAKEALRHGSALE 497

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-11
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-11
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-10
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	6e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-07
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-06
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	5e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	7e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	4e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	5e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	6e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	7e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	7e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-05
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	9e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	1e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-04
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-04
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	4e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	4e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	6e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	9e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.001
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.001
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.001
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	0.002
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	0.002
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	0.002
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.003
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	0.004
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.004
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.004

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 16/159 (10%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-NSRDGRSYSTNL 129
           L+ +L +AE +EY  SK + ++ DL A  I+  +D   ++S FGL +  S    +    +
Sbjct: 103 LQFSLDVAEGMEYLESK-KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPV 161

Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEG 188
            +T PE L+  + + +S ++S+G LL ++ S G+   P  +L  +++         C+E 
Sbjct: 162 KWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKE---------CVEK 212

Query: 189 QFSSD--EG--TELVRLASRCLQYEPRERPNPRSLVTAL 223
            +  +  EG   ++  L + C + EP++RP+   L   L
Sbjct: 213 GYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKL 251

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 46/165 (27%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRI-VFDDDVNPRLSCFGLMKNSR 120
             +     LR+ L I E LEY  S    + H DL    I +  D+   +L+ FGL K   
Sbjct: 87  GKLSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENILLDSDNGKVKLADFGLSKLLT 144

Query: 121 DGRSYST----NLAFTPPEYLR-TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
             +S         A+  PE L   G  + +S ++S G +L +L            DLIR 
Sbjct: 145 SDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------PELKDLIR- 195

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
                                       + LQ +P +RP+ + ++
Sbjct: 196 ----------------------------KMLQKDPEKRPSAKEIL 212

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
           P+      ++AL I   LEY  S    + H DL    I+ D++   +++ FGL K     
Sbjct: 94  PLSEDEAKKIALQILRGLEYLHS--NGIIHRDLKPENILLDENGVVKIADFGLAKKLLKS 151

Query: 123 RSYSTNLAFTP----PEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSHALD--LIRD 175
            S  T    TP    PE L  G    P+  ++S G +L +LL+GK       +   L   
Sbjct: 152 SSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLI 211

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
           R I        +    S    E   L  +CL  +P +RP    ++
Sbjct: 212 RRILG-PPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEIL 255

Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 56.0 bits (136), Expect = 6e-09
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 22/169 (13%)

Query: 66  KWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS 124
             +  L  AL IA  +EY  SK     H DL A   +  +++  ++S FGL ++  D   
Sbjct: 101 SLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 158

Query: 125 YSTNLA-----FTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK----HIPPSHALDLIR 174
           Y          +  PE L+ G+ T +S ++SFG LL ++ + G+     +  +  L+ ++
Sbjct: 159 YKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLK 218

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                    +C           EL +L  +C   +P +RP    LV  L
Sbjct: 219 KGYRLPKPPNCPP---------ELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 22/170 (12%)

Query: 65  MKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDGR 123
           +  +  L  AL IA  +EY  SK     H DL A   +  +++  ++S FGL ++  D  
Sbjct: 99  LSLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 156

Query: 124 SYSTNLA-----FTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK----HIPPSHALDLI 173
            Y          +  PE L+ G+ T +S ++SFG LL ++ + G+     +     L+ +
Sbjct: 157 YYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYL 216

Query: 174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           ++        +C           EL  L  +C   +P +RP    LV  L
Sbjct: 217 KNGYRLPQPPNCPP---------ELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 21/166 (12%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           +++  + A  +EY  SK   ++ DL A   +  +    ++S FG+ +   DG   ST   
Sbjct: 97  IQMVENAAAGMEYLESKH-CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM 155

Query: 129 ----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQT---- 180
               + +T PE L  GR + ES ++SFG LL +  S   +P ++  +      I+     
Sbjct: 156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL 215

Query: 181 -LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT 225
              + C +          + RL  RC +Y+P +RP+  ++   L +
Sbjct: 216 PCPELCPD---------AVYRLMERCWEYDPGQRPSFSTVHQELQS 252

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 65  MKWAMRLRVALHIAEALEY--CTSKERALYHDLNAYRIVFDDDVNPRLSCFGL-----MK 117
           + W  R ++A+ IA+AL +  C      +  +L+  +I+ D    P L    L       
Sbjct: 777 LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL-RLSLPGLLCTD 835

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA-------- 169
                 S     A+  PE   T  +T +S +Y FG +L++LL+GK   P+ A        
Sbjct: 836 TKCFISS-----AYVAPETRETKDITEKSDIYGFGLILIELLTGKS--PADAEFGVHGSI 888

Query: 170 LDLIR----DRNIQTLTDSCLEGQFSSD--EGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           ++  R    D ++    D  + G  S +  E  E++ LA  C   +P  RP    ++  L
Sbjct: 889 VEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Query: 224 VTLQKDT 230
            +  + +
Sbjct: 949 ESASRSS 955

Length = 968

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 56  NNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGL 115
              S E   +     L  A+ IA+ +EY  SK + ++ DL A   +  +D+  ++S FGL
Sbjct: 93  VFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK-KFVHRDLAARNCLVGEDLVVKISDFGL 151

Query: 116 MKNSRDGRSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH----I 164
            ++  D   Y         + +  PE L+ G  T +S ++SFG LL ++ + G      +
Sbjct: 152 SRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL 211

Query: 165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                L+ +R        + C +         EL  L   C Q +P +RP    LV  L
Sbjct: 212 SNEEVLEYLRKGYRLPKPEYCPD---------ELYELMLSCWQLDPEDRPTFSELVERL 261

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK--NSRDGRSYSTN 128
           L  +  I + ++Y  S+ R ++ DL A  I+ + +   ++S FGL K         Y   
Sbjct: 112 LLFSSQICKGMDYLGSQ-RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKE 170

Query: 129 LAFTP-----PEYLRTGRVTPESVMYSFGTLLLDLLS-GKH--IPPSHALDLI---RDRN 177
              +P     PE LRT + +  S ++SFG  L +L + G     PP+  L +I   + + 
Sbjct: 171 PGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQM 230

Query: 178 IQT-LTDSCLEGQ-FSSDEG--TELVRLASRCLQYEPRERPNPRSLVTALVTL 226
           I T L +   EG+          E+  L   C + EP++RP+   L+  +  L
Sbjct: 231 IVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 71  LRVALHIAEALEYC----TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS 126
            R+   +  AL  C          L+ DL    I  D + N +L  FGL K      S++
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA 167

Query: 127 TNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA---LDLIRDRNIQ 179
                TP    PE L       +S ++S G L+ +L +    PP  A   L L     I+
Sbjct: 168 KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALS--PPFTARNQLQLA--SKIK 223

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
                 +  ++SS    EL  +    L  +P +RP+
Sbjct: 224 EGKFRRIPYRYSS----ELNEVIKSMLNVDPDKRPS 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 70  RLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-N 128
           +L  AL + E +EY   K   ++ DL A  ++  +D+  ++S FGL K +  G+      
Sbjct: 104 QLGFALDVCEGMEYLEEKN-FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLP 162

Query: 129 LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
           + +T PE LR  + + +S ++SFG LL ++ S   +P
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 30/163 (18%)

Query: 72  RVALHIAEALEYCTSKERALYHDLN-AYR------IVFDDDVNPRLSCFGLMKNSRDGRS 124
                I  ALEY         H     +R      I+ D+D + +L+ FGL +    G  
Sbjct: 101 FYLRQILSALEYL--------HSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEK 152

Query: 125 YSTN---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK-----HIPPSHALDLIRDR 176
            +T      +  PE L          ++S G +L +LL+GK               I   
Sbjct: 153 LTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKP 212

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                          S E  +L+R   + L  +P +R      
Sbjct: 213 KPPFPPPEWD----ISPEAKDLIR---KLLVKDPEKRLTAEEA 248

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 17/182 (9%)

Query: 39  IFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAY 98
           I M  +P  +F  L+F      +   +K    ++ AL  A  + Y  SK   ++ DL A 
Sbjct: 69  IVMELVPGGDF--LSF---LRKKKDELKTKQLVKFALDAAAGMAYLESKN-CIHRDLAAR 122

Query: 99  RIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA-----FTPPEYLRTGRVTPESVMYSFGT 153
             +  ++   ++S FG+ +   DG   S+ L      +T PE L  GR + ES ++S+G 
Sbjct: 123 NCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGI 182

Query: 154 LLLDLLSGKHIP-PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRE 212
           LL +  S    P P       R++  +    SC   Q   D   ++ ++  RC  Y+P  
Sbjct: 183 LLWETFSLGVCPYPGMTNQQAREQVEKGYRMSC--PQKCPD---DVYKVMQRCWDYKPEN 237

Query: 213 RP 214
           RP
Sbjct: 238 RP 239

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
              G++ ++  D+  ++E Y + +++    +  A+   + +Y      +EAL D  +A  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           + P    A Y    A + LGK  EA  A  +A  L+
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 25/203 (12%)

Query: 21  IVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEA 80
           IV L+ +      I    I M  +P      LTF           K    L+++L  A  
Sbjct: 54  IVKLIGVCVQKQPIY---IVMELVPGGSL--LTFLRKKKNRLTVKK---LLQMSLDAAAG 105

Query: 81  LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-------LAFTP 133
           +EY  SK   ++ DL A   +  ++   ++S FG M    +G  Y+ +       + +T 
Sbjct: 106 MEYLESKN-CIHRDLAARNCLVGENNVLKISDFG-MSREEEGGIYTVSDGLKQIPIKWTA 163

Query: 134 PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSD 193
           PE L  GR T ES ++S+G LL +  S    P           N QT        +  + 
Sbjct: 164 PEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGM------SNQQTRERIESGYRMPAP 217

Query: 194 EGT--ELVRLASRCLQYEPRERP 214
           +    E+ RL  +C  Y+P  RP
Sbjct: 218 QLCPEEIYRLMLQCWAYDPENRP 240

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 23/173 (13%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKN-SR 120
           + +     L++AL IA+ +EY  SK     H DL A   +  +++  ++S FGL ++   
Sbjct: 97  EKLTLKDLLQMALQIAKGMEYLESKN--FVHRDLAARNCLVTENLVVKISDFGLSRDIYE 154

Query: 121 DGRSYSTNLAFTP-----PEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHAL 170
           D           P     PE L+ G+ T +S ++SFG LL ++ +        +     L
Sbjct: 155 DDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVL 214

Query: 171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           +L+ D       ++C +         EL  L  +C  Y+P +RP    LV  L
Sbjct: 215 ELLEDGYRLPRPENCPD---------ELYELMLQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 77  IAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTP--- 133
           I  ALEY  S    +Y DL    I+ D D + +L+ FGL K      S +     TP   
Sbjct: 102 IVLALEYLHSL-GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYL 160

Query: 134 -PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQ--F 190
            PE L           +S G LL ++L+GK  PP +A       + + + +  L+    F
Sbjct: 161 APEVLLGKGYGKAVDWWSLGVLLYEMLTGK--PPFYA------EDRKEIYEKILKDPLRF 212

Query: 191 SSDEGTELVRLASRCLQYEPRER 213
                 E   L S  LQ +P +R
Sbjct: 213 PEFLSPEARDLISGLLQKDPTKR 235

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 25/165 (15%)

Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
           A+ IA  + Y  SK R ++ DL A  I+   D   ++  FGLM+       +        
Sbjct: 103 AVQIANGMRYLESK-RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLK 161

Query: 129 --LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-----GKHIPPSHALDLIRDRNIQTL 181
              A+  PE LRT   +  S ++ FG  L ++ +        +  S  L  I D+  + L
Sbjct: 162 VPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKI-DKEGERL 220

Query: 182 T--DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV 224
              ++C +         ++  +  +C  + P +RP   +L   L 
Sbjct: 221 ERPEACPQ---------DIYNVMLQCWAHNPADRPTFAALREFLP 256

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 31/172 (18%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           L +A+ IA  +EY +S    ++ DL A   +  + +  ++S FGL   SRD   YS +  
Sbjct: 127 LHIAIQIAAGMEYLSSHH-FVHRDLAARNCLVGEGLTVKISDFGL---SRDI--YSADYY 180

Query: 129 ---------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
                    + + PPE +  G+ T ES ++SFG +L ++ S    P         +++IR
Sbjct: 181 RVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIR 240

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL 226
            R +    + C            +  L   C    P  RP  + + T L + 
Sbjct: 241 SRQLLPCPEDC---------PARVYALMIECWNEIPARRPRFKDIHTRLRSW 283

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 300 KKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI 359
            K   AF   DF  +++ YTQ ID+    +   +A R+ + +      EA+ DA++A  +
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL 65

Query: 360 SPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
            P    A   +  A   L +   A+AAL + + L 
Sbjct: 66  DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100

Length = 356

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-------S 126
           A  I E + Y  S+   ++ DL A  ++ D+D   ++  FGL K   +G  Y        
Sbjct: 113 AQQICEGMAYLHSQ-HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGD 171

Query: 127 TNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS---GKHIPPSHALDLIRDRNIQT--- 180
           + + +   E L+  + +  S ++SFG  L +LL+    K  PP    ++I  +  Q    
Sbjct: 172 SPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVV 231

Query: 181 -LTDSCLEGQ---FSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL 226
            L +    G       +   E+  L   C + E + RP  RSL+  L  +
Sbjct: 232 RLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 60  GETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-- 117
           G+ + +K    + +A  IA+ + Y   +   ++ DL A  I+  D++  +++ FGL +  
Sbjct: 94  GDGKYLKLPQLVDMAAQIADGMAY-IERMNYIHRDLRAANILVGDNLVCKIADFGLARLI 152

Query: 118 -----NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PSHALD 171
                 +R G  +   + +T PE    GR T +S ++SFG LL +L++   +P P     
Sbjct: 153 EDNEYTARQGAKFP--IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR 210

Query: 172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            + ++  +     C +G   S     L  L   C + +P ERP
Sbjct: 211 EVLEQVERGYRMPCPQGCPES-----LHELMKLCWKKDPDERP 248

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-NL 129
           L+ +L + EA+EY  +    ++ DL A  ++  +D   ++S FGL K +   +      +
Sbjct: 105 LKFSLDVCEAMEYLEANN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 163

Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
            +T PE LR  + + +S ++SFG LL ++ S   +P
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYL-MSDMPQEALNDASQAQ 357
           K  G+  F+  D+  +IE Y + +++    +  A+   +L+YL +    +EAL D  +A 
Sbjct: 7   KNLGNALFKLGDYDEAIEAYEKALELDPD-NAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 358 VISP 361
            + P
Sbjct: 66  ELDP 69

Length = 69

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 22/195 (11%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFD-DD 105
            +   L       G   P+  +  L +   I  ALEY  SK   ++ D+    I+ D D 
Sbjct: 80  VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK-GIIHRDIKPENILLDRDG 138

Query: 106 VNPRLSCFGLMKNSRDGRSYSTN----------LAFTPPEYLR---TGRVTPESVMYSFG 152
              +L  FGL K   D  S S+             +  PE L        +  S ++S G
Sbjct: 139 RVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLG 198

Query: 153 TLLLDLLSGKHIPPSHALDLIRD---RNIQTLTDSCLEGQFSSDEG----TELVRLASRC 205
             L +LL+G                 + I  L    L    S             L  + 
Sbjct: 199 ITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKL 258

Query: 206 LQYEPRERPNPRSLV 220
           L  +P+ R +  S +
Sbjct: 259 LAKDPKNRLSSSSDL 273

Length = 384

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 60  GETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-- 117
           GE + +K    + +A  +A  + Y   +   ++ DL +  I+  D +  +++ FGL +  
Sbjct: 94  GEGRALKLPNLVDMAAQVAAGMAY-IERMNYIHRDLRSANILVGDGLVCKIADFGLARLI 152

Query: 118 -----NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PSHALD 171
                 +R G  +   + +T PE    GR T +S ++SFG LL +L++   +P P     
Sbjct: 153 EDNEYTARQGAKFP--IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG---- 206

Query: 172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            + +R +    +         D    L  L  +C + +P ERP
Sbjct: 207 -MNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERP 248

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 69  MRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDG 122
           M ++    IA  +EY +SK   ++ DL A   + ++++N  ++ FGL K        R G
Sbjct: 113 MLVKFMTDIASGMEYLSSK-SFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQG 171

Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRN 177
           R     + +   E L     T +S ++SFG  + ++ +    P      S   D +R  N
Sbjct: 172 RIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGN 231

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
                  CL+G +S         L S C    P++RP
Sbjct: 232 RLKQPPDCLDGLYS---------LMSSCWLLNPKDRP 259

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 28/176 (15%)

Query: 52  LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
           L F  +  G  QP+     +  +  IAE + +   +   ++ DL A  I+    +  +++
Sbjct: 88  LDFLKSDEGSKQPL--PKLIDFSAQIAEGMAF-IEQRNYIHRDLRAANILVSASLVCKIA 144

Query: 112 CFGLMK-------NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI 164
            FGL +        +R+G  +   + +T PE +  G  T +S ++SFG LL+++++   I
Sbjct: 145 DFGLARVIEDNEYTAREGAKFP--IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI 202

Query: 165 P------PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
           P      P     L R   +    ++C E         EL  +  RC +  P ERP
Sbjct: 203 PYPGMSNPEVIRALERGYRMPR-PENCPE---------ELYNIMMRCWKNRPEERP 248

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 21/164 (12%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           L +A+ IA  +EY +S    ++ DL A  I+  + ++ ++S  GL +       Y     
Sbjct: 127 LHIAIQIAAGMEYLSS-HFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPK 185

Query: 129 ----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + + PPE +  G+ + +S ++SFG +L ++ S    P         ++++R R + 
Sbjct: 186 SLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLL 245

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
             ++ C    +S         L + C Q  P  RP  + + T L
Sbjct: 246 PCSEDCPPRMYS---------LMTECWQEGPSRRPRFKDIHTRL 280

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 22/180 (12%)

Query: 55  SNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFG 114
           + N  G   P    M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG
Sbjct: 107 AENNPGRPPPTLQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFG 164

Query: 115 LMKN------SRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP--- 165
           + ++       R G      + +  PE L+ G  T  S M+SFG +L ++ S    P   
Sbjct: 165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG 224

Query: 166 --PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                 L  + D       D+C E          +  L   C Q+ P+ RP    +V  L
Sbjct: 225 LSNEQVLKFVMDGGYLDQPDNCPE---------RVTDLMRMCWQFNPKMRPTFLEIVNLL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 75  LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN------ 128
           L +A+ +EY  SK + ++ DL A   + D+    +++ FGL ++  D   YS +      
Sbjct: 105 LQVAKGMEYLASK-KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAK 163

Query: 129 --LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCL 186
             + +   E L+T + T +S ++SFG LL +L++ +  PP        D +   +T   L
Sbjct: 164 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP------YPDVDSFDITVYLL 216

Query: 187 EG------QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
           +G      ++  D    L  +   C   +P  RP    LV+
Sbjct: 217 QGRRLLQPEYCPD---PLYEVMLSCWHPKPEMRPTFSELVS 254

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 23/172 (13%)

Query: 55  SNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCF 113
           S   + + + +     +  A  I+  ++Y    E  L H DL A  ++  +    ++S F
Sbjct: 114 SYLDNPDERALTMGDLISFAWQISRGMQYLA--EMKLVHRDLAARNVLVAEGRKMKISDF 171

Query: 114 GLMKNSRDGRSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH--- 163
           GL ++  +  SY         + +   E L     T +S ++SFG LL ++++ G +   
Sbjct: 172 GLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 231

Query: 164 -IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            I P    +L++        ++C E         E+  L   C + EP +RP
Sbjct: 232 GIAPERLFNLLKTGYRMERPENCSE---------EMYNLMLTCWKQEPDKRP 274

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 133 PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP---PSH--ALDLIRDRNIQTLTDSCLE 187
            PE L+ G  T +S ++SFG +L ++ +    P    S+   L  + D     L ++C +
Sbjct: 189 APESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPD 248

Query: 188 GQFSSDEGTELVRLASRCLQYEPRERP 214
                    +L+ L   C QY P+ RP
Sbjct: 249 ---------KLLELMRMCWQYNPKMRP 266

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 24/156 (15%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGR 123
           + +A  IAE + +   K   ++ DL A  I+  + +  +++ FGL +        +R+G 
Sbjct: 105 IDMAAQIAEGMAFIERKN-YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGA 163

Query: 124 SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTL-- 181
            +   + +T PE +  G  T +S ++SFG LL ++++   IP     +    +N++    
Sbjct: 164 KFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYR 221

Query: 182 ---TDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
               D+C E         EL  L   C + +P ERP
Sbjct: 222 MPRPDNCPE---------ELYELMRLCWKEKPEERP 248

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR 123
           P++      +   I + L+Y  S ER ++ D+ A  ++  +  + +L+ FG+     D +
Sbjct: 97  PLEETYIATILREILKGLDYLHS-ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ 155

Query: 124 SYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN-I 178
                   TP    PE ++      ++ ++S G   ++L  G+  PP+  L  +R    I
Sbjct: 156 IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE--PPNSDLHPMRVLFLI 213

Query: 179 QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
              +   LEGQ+S             CL  +PR RP  + L+
Sbjct: 214 PKNSPPTLEGQYSK----PFKEFVEACLNKDPRFRPTAKELL 251

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 133 PPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS 191
           PPE +   + ++  +  +SFGT L ++ SG   P S ALD    + +Q   D     Q  
Sbjct: 172 PPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLS-ALD--SQKKLQFYED---RHQLP 225

Query: 192 SDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           + + TEL  L ++C+ YEP  RP+ R+++  L
Sbjct: 226 APKWTELANLINQCMDYEPDFRPSFRAIIRDL 257

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 21/164 (12%)

Query: 72  RVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGL---MKNSRDGRSYSTN 128
           ++A+ + E L Y  +  R ++ D+    I+ +     +L  FG+   + NS       T+
Sbjct: 107 KIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTS 166

Query: 129 LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK------------HIPPSHALDLIRDR 176
             +  PE ++ G+ T +S ++S G  +++L  GK               P   LDL++ +
Sbjct: 167 -TYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQ-Q 224

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
            +Q          F  D    L      CL  +P ERP P+ L 
Sbjct: 225 IVQEPPPRLPSSDFPED----LRDFVDACLLKDPTERPTPQQLC 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 87  KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS---TNLAFTPPEYLRTGRVT 143
           +ER +Y DL    I+ DD  + R+S  GL  +  +G++       + +  PE ++  R T
Sbjct: 120 QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYT 179

Query: 144 PESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLAS 203
                ++ G LL ++++G+  P       I+   ++ L     E ++S     +   L  
Sbjct: 180 FSPDWWALGCLLYEMIAGQS-PFQQRKKKIKREEVERLVKEVQE-EYSEKFSPDARSLCK 237

Query: 204 RCLQYEPRER 213
             L  +P+ER
Sbjct: 238 MLLCKDPKER 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSYS 126
           A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  + 
Sbjct: 108 AAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 166

Query: 127 TNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PSHALDLIRDRNIQTLTDSC 185
             + +T PE    GR T +S ++SFG LL +L +   +P P      + D+  +     C
Sbjct: 167 --IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 224

Query: 186 LEGQFSSDEGTELVRLASRCLQYEPRERP 214
                  +    L  L  +C + EP ERP
Sbjct: 225 -----PPECPESLHDLMCQCWRKEPEERP 248

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 38  VIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNA 97
           VI  F +   + H     +   G  + +     L+  + IA  +EY +++   ++ DL A
Sbjct: 84  VILPF-MKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR-NFIHRDLAA 141

Query: 98  YRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPP------EYLRTGRVTPESVMYSF 151
              +  +D+   ++ FGL K    G  Y        P      E L     T +S +++F
Sbjct: 142 RNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAF 201

Query: 152 GTLLLDLLSGKHIP-----PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCL 206
           G  + ++ +    P          D +R  N     + CL+         EL  L   C 
Sbjct: 202 GVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLD---------ELYDLMYSCW 252

Query: 207 QYEPRERPNPRSLVTAL 223
           + +P++RP    L   L
Sbjct: 253 RADPKDRPTFTKLREVL 269

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 76  HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSYSTN 128
            IAE + Y   ++  ++ DL A  ++  + +  +++ FGL +        +R+G  +   
Sbjct: 111 QIAEGMAY-IERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFP-- 167

Query: 129 LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
           + +T PE +  G  T +S ++SFG LL ++++   IP
Sbjct: 168 IKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIP 204

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 0.001
 Identities = 27/136 (19%), Positives = 47/136 (34%)

Query: 266 EILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG 325
             L +LG  ++     E + ++     +        G +      +  ++E   + + + 
Sbjct: 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197

Query: 326 TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQA 385
                 A     L YL     +EAL    +A  + P    A Y  A  L  LG+  EA  
Sbjct: 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257

Query: 386 ALREASILENKKSANA 401
           AL +A  L+       
Sbjct: 258 ALEKALELDPDLYNLG 273

Length = 291

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 21/179 (11%)

Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY--STN--- 128
           A  +A  +EY  S+ + ++ DL A  ++  +D   +++ FGL ++  +   Y  +TN   
Sbjct: 140 AYQVARGMEYLASQ-KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRL 198

Query: 129 -LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHALDLIRDRNIQTLT 182
            + +  PE L     T +S ++SFG LL ++ +        IP      L+++ +     
Sbjct: 199 PVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP 258

Query: 183 DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIP 241
            +C           EL  +   C    P +RP  + LV  L  +   T    ++ + +P
Sbjct: 259 ANCTH---------ELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTSTDEYLDLSVP 308

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 122 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 180

Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 181 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLL 240

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 241 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 275

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFT 132
           V   + + LEY  S    ++ D+ A  I+   D   +L  FGL     D ++    +  T
Sbjct: 103 VCKELLKGLEYLHSN-GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGT 160

Query: 133 P----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH------ALDLIRDRNIQTLT 182
           P    PE +       ++ ++S G   ++L  GK  PP        AL  I       L 
Sbjct: 161 PYWMAPEVINGKPYDYKADIWSLGITAIELAEGK--PPYSELPPMKALFKIATNGPPGL- 217

Query: 183 DSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
                 +  SDE  + +    +CLQ  P +RP
Sbjct: 218 ---RNPEKWSDEFKDFL---KKCLQKNPEKRP 243

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 22/156 (14%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGL---MK 117
           E    +WA  + VAL   +AL     +E  +  DLN   I+ DD  + +L+ F     ++
Sbjct: 84  EECVKRWAAEMVVAL---DALH----REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVE 136

Query: 118 NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
           +S DG +      +  PE       T     +S G +L +LL+GK +   H         
Sbjct: 137 DSCDGEAVEN--MYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHP------SG 188

Query: 178 IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER 213
           I T T   +  ++ S+E   L+    + LQ+ P ER
Sbjct: 189 INTHTTLNIP-EWVSEEARSLL---QQLLQFNPTER 220

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 16/165 (9%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
           +P+      R  + I   L +  SK + L+ D+ +  +  D   N ++   G+ K   D 
Sbjct: 96  RPLPEDQVWRFFIQILLGLAHLHSK-KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN 154

Query: 123 RSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
            +++  +  TP    PE         +S +++ G +L +  +GKH  P  A       N 
Sbjct: 155 TNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKH--PFDA------NNQ 206

Query: 179 QTLTDSCLEGQF---SSDEGTELVRLASRCLQYEPRERPNPRSLV 220
             L    + G F   S     +L +L  +CL  + R+RP+   L+
Sbjct: 207 GALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLL 251

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 81  LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTP----PEY 136
           LEY  S  + ++ D+ A  I+ +++   +L+ FG+     D  +    +  TP    PE 
Sbjct: 112 LEYLHSN-KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEV 170

Query: 137 LRTGRVTPESVMYSFGTLLLDLLSGK----HIPPSHALDLIRDRNIQTLTDSCLEGQFSS 192
           ++      ++ ++S G   +++  GK     I P  A+ +I ++   TL+D     ++S 
Sbjct: 171 IQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDP---EKWS- 226

Query: 193 DEGTELVRLASRCLQYEPRERPNPRSL 219
               E      +CL  +P ERP+   L
Sbjct: 227 ---PEFNDFVKKCLVKDPEERPSAIQL 250

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 133 PPEYLRTGRVTPESVM--YSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQTLTDSC 185
            PE +R G+ +       +SFGT LL++ S    P      S      +D++   + D  
Sbjct: 172 APECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDC- 230

Query: 186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV 224
                      EL  L ++C  Y+P +RP+ R+++  L 
Sbjct: 231 ----------AELANLINQCWTYDPTKRPSFRAILRDLN 259

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 28/131 (21%)

Query: 69  MRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN 128
             L  A  I  ALEY  SKE  +Y DL    I+ D + + +L+ FG  K  RD R+++  
Sbjct: 102 TGLFYASEIVCALEYLHSKE-IVYRDLKPENILLDKEGHIKLTDFGFAKKLRD-RTWT-- 157

Query: 129 LAFTPPEYLRTGRVTPESVM----------YSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
           L  T PEYL      PE +           ++ G L+ ++L G   PP        D N 
Sbjct: 158 LCGT-PEYL-----APEVIQSKGHNKAVDWWALGILIYEMLVG--YPP------FFDDNP 203

Query: 179 QTLTDSCLEGQ 189
             + +  L G+
Sbjct: 204 FGIYEKILAGK 214

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%)

Query: 52  LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
           L F  +  G+  P+  A  + +A  +AE + Y   +  +++ DL A  I+  +D+  +++
Sbjct: 90  LAFLRSPEGQVLPV--ASLIDMACQVAEGMAYLEEQ-NSIHRDLAARNILVGEDLVCKVA 146

Query: 112 CFGLMKNSRDG--RSYSTNLAF--TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-- 165
            FGL +  ++    S    + +  T PE    G  + +S ++SFG LL ++ +   +P  
Sbjct: 147 DFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYP 206

Query: 166 ---PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                   D I           C +         E+ ++   C   EP +RP+ ++L
Sbjct: 207 GMNNHEVYDQITAGYRMPCPAKCPQ---------EIYKIMLECWAAEPEDRPSFKAL 254

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.98
KOG0610	459	consensus Putative serine/threonine protein kinase	99.98
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.98
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.98
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.98
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.98
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.98
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.98
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.98
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.98
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.98
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.98
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.98
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.98
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.98
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.98
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.98
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.98
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.98
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.98
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.98
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.98
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.98
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.98
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.98
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.98
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.98
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.98
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.98
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.98
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.98
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.98
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.98
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.98
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.98
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.98
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.98
PHA02882	294	putative serine/threonine kinase; Provisional	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.97
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.97
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.97
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.97
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.97
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.97
PHA03210	501	serine/threonine kinase US3; Provisional	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
PTZ00284	467	protein kinase; Provisional	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
PLN00009	294	cyclin-dependent kinase A; Provisional	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.96
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.96
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.96
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.94
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.94
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.94
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.94
KOG3653	534	consensus Transforming growth factor beta/activin	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.94
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.92
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.92
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.91
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.91
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.9
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.9
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.89
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.88
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.86
KOG0553	304	consensus TPR repeat-containing protein [General f	99.85
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.85
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.84
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.79
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.77
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.76
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.74
PRK09188	365	serine/threonine protein kinase; Provisional	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.71
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.71
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.68
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.68
PRK12274	218	serine/threonine protein kinase; Provisional	99.67
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
KOG4234	271	consensus TPR repeat-containing protein [General f	99.63
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.63
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.62
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.61
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.61
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.6
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.57
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.54
PRK11189	296	lipoprotein NlpI; Provisional	99.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.46
PRK10345	210	hypothetical protein; Provisional	99.44
KOG1125	579	consensus TPR repeat-containing protein [General f	99.44
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.43
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.41
smart00090	237	RIO RIO-like kinase.	99.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.39
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.38
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.36
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.34
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.33
KOG4555	175	consensus TPR repeat-containing protein [Function	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.3
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.29
KOG1126	638	consensus DNA-binding cell division cycle control	99.28
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.27
PRK14879	211	serine/threonine protein kinase; Provisional	99.26
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.23
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.22
PRK12370	553	invasion protein regulator; Provisional	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.18
PLN02789	320	farnesyltranstransferase	99.16
PRK12370	553	invasion protein regulator; Provisional	99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
KOG1126	638	consensus DNA-binding cell division cycle control	99.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
PRK15331	165	chaperone protein SicA; Provisional	99.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.13
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.12
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.12
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.11
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
PRK10803	263	tol-pal system protein YbgF; Provisional	99.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.02
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.02
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.02
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.0
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.98
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.98
KOG0553	304	consensus TPR repeat-containing protein [General f	98.97

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1e-44  Score=324.80  Aligned_cols=206  Identities=16%  Similarity=0.236  Sum_probs=172.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeeccc------cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-C
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQI------PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-K   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~~------~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~   87 (401)
                      ..+++.++|+.++++.+||+||+|++++..      .+||||+|+.++.+....+.+++...-+++.+|++||.|||+ .
T Consensus       119 ~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~  198 (364)
T KOG0581|consen  119 ALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEER  198 (364)
T ss_pred             HHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence            345889999999999999999999966552      389999987777666666889999999999999999999996 6


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                       +||||||||+|||++..|.+||||||.++....+  .++.||..|||||.+.+..|+.++||||||++++|+.+|+.|+
T Consensus       199 -~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~  277 (364)
T KOG0581|consen  199 -KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPY  277 (364)
T ss_pred             -CeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCC
Confidence             9999999999999999999999999999986554  5788999999999999999999999999999999999999987


Q ss_pred             CchhhHHhh-hccccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIR-DRNIQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......... -..+..+++. ..+..|.+ ++++++++|..||++||.+|||+.+++++
T Consensus       278 ~~~~~~~~~~~~Ll~~Iv~~-ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  278 PPPNPPYLDIFELLCAIVDE-PPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CCcCCCCCCHHHHHHHHhcC-CCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            653100000 0112222222 23456665 89999999999999999999999999874

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-43  Score=330.30  Aligned_cols=209  Identities=22%  Similarity=0.267  Sum_probs=176.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeee-ecc-----ccEeeecCCcccc-cccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIF-MFQ-----IPSYEFHCLTFSN-NFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~-~~~-----~~v~Ey~~~~l~~-~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .++|.+|+.++.+++|||||++++ +.+     .+|||||++|.+. ++.. .+..+++..+++++.||+.||+|||++ 
T Consensus        83 ~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~-  161 (362)
T KOG0192|consen   83 RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE-  161 (362)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence            569999999999999999999983 333     3499999966544 4444 378999999999999999999999999 


Q ss_pred             C-ceeccCCCCCEEECCCC-CeEEecccCccccCC----CCccccccccCCccccc--cCccCCCCcchhhHHHHHHHHh
Q 015733           89 R-ALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLR--TGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~-ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~--~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      + ||||||||.|||++.++ ++||+|||+++....    .+...||+.|||||++.  ...++.|+|||||||++|||+|
T Consensus       162 ~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t  241 (362)
T KOG0192|consen  162 GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLT  241 (362)
T ss_pred             CCeeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHH
Confidence            8 99999999999999997 999999999987553    23367899999999999  5689999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |+.||.+...    ......++....+..+|..+++.+..||.+||+.||..||++.+|+..|+.+....
T Consensus       242 ~~~Pf~~~~~----~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~  307 (362)
T KOG0192|consen  242 GEIPFEDLAP----VQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHI  307 (362)
T ss_pred             CCCCCCCCCH----HHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhh
Confidence            9999876432    12223333445566778889999999999999999999999999999999886643

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9e-42  Score=319.34  Aligned_cols=209  Identities=22%  Similarity=0.301  Sum_probs=176.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeee-ecc----ccEeeecC-CcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIF-MFQ----IPSYEFHC-LTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~-~~~----~~v~Ey~~-~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      +..++|++|+.+|++++|+|||++++ +..    .+|||||+ |+|+..+.. ++..+...+.+.++.|||+||+||+++
T Consensus       243 m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~  322 (468)
T KOG0197|consen  243 MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK  322 (468)
T ss_pred             cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC
Confidence            45699999999999999999999993 333    34999999 557776664 578899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCCcc--cc---ccccCCccccccCccCCCCcchhhHHHHHHHHhC-
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY--ST---NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-  161 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~---~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg-  161 (401)
                       ++|||||.++||||+++..+||+|||+++...+....  .+   ...|.|||++..++++.+||||||||+||||+|- 
T Consensus       323 -~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G  401 (468)
T KOG0197|consen  323 -NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYG  401 (468)
T ss_pred             -CccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccC
Confidence             9999999999999999999999999999965544321  12   4689999999999999999999999999999995 


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      +.|+.+.     .....-+.+....+.+.|..||..+.+||..||+.+|++|||++.+...|+.+...
T Consensus       402 ~~py~~m-----sn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  402 RVPYPGM-----SNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             CCCCCCC-----CHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence            5554442     22334455666778888999999999999999999999999999998888877643

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.9e-42  Score=297.17  Aligned_cols=210  Identities=16%  Similarity=0.162  Sum_probs=171.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhCCCeEEEeee-ecc------ccEeeecCCccc-cccc---CCCCCCCHHHHHHHHHHHHH
Q 015733           11 PMIRLQSTYFIVSLVLIASMSSFILLAVIF-MFQ------IPSYEFHCLTFS-NNFS---GETQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        11 ~~~~~~~~~f~~E~~~l~~~~h~niv~~~~-~~~------~~v~Ey~~~~l~-~~~~---~~~~~l~~~~~~~i~~qi~~   79 (401)
                      ||=+..+.+.+.|+.+|++++|||||++|. .+.      .+|||||++|.+ .++.   ..++.++++.+++++.|++.
T Consensus        56 ~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~  135 (375)
T KOG0591|consen   56 MMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCR  135 (375)
T ss_pred             hccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHH
Confidence            555667789999999999999999999993 222      349999995544 4332   36788999999999999999


Q ss_pred             HHHHHhcC-CC--ceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhH
Q 015733           80 ALEYCTSK-ER--ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        80 ~l~~lH~~-~~--ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      ||.++|++ .+  |+||||||.||+++.+|.+||+|||+++...+.+    +..|||.||+||.+.+.+|+++|||||+|
T Consensus       136 AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslG  215 (375)
T KOG0591|consen  136 ALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLG  215 (375)
T ss_pred             HHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHH
Confidence            99999993 14  9999999999999999999999999999987764    45799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCC-hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS-SDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |++|||+.-++||.+.........+.     ..-.+++| ..++.++..||..|+..||..||+.-.++..+..
T Consensus       216 CllyEMcaL~~PF~g~n~~~L~~KI~-----qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  216 CLLYEMCALQSPFYGDNLLSLCKKIE-----QGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             HHHHHHHhcCCCcccccHHHHHHHHH-----cCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            99999999999998763322222211     12222345 5689999999999999999999996666655544

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-41  Score=319.95  Aligned_cols=203  Identities=17%  Similarity=0.211  Sum_probs=175.6

Q ss_pred             hhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           13 IRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        13 ~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...|++...+||.+.++|+|||||+++.+|+     .+|.|+|..+.+..+....++|++.++..++.||+.||.|||+.
T Consensus        58 k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~  137 (592)
T KOG0575|consen   58 KPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSL  137 (592)
T ss_pred             CcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            3478899999999999999999999997666     34999999766555666889999999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                       +|||||||-.|+||+++.++||+|||+|.....    ..+.||||.|.|||++.....+..+||||+||++|.|++|++
T Consensus       138 -~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~P  216 (592)
T KOG0575|consen  138 -GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRP  216 (592)
T ss_pred             -CceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCC
Confidence             999999999999999999999999999998653    356799999999999999999999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||...........+.    ..  .-.+|...+.+..+||..+|++||.+|||+.+|+.+
T Consensus       217 PFetk~vkety~~Ik----~~--~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  217 PFETKTVKETYNKIK----LN--EYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             CcccchHHHHHHHHH----hc--CcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            988764333222211    11  123577889999999999999999999999999974

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=313.52  Aligned_cols=212  Identities=28%  Similarity=0.537  Sum_probs=177.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEee---eec---cccEeeecCC-cccccccCCCC-CCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVI---FMF---QIPSYEFHCL-TFSNNFSGETQ-PMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~---~~~---~~~v~Ey~~~-~l~~~~~~~~~-~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+|..|+.++.+++|||+|.+.   ...   ..+|||||++ +|.+.++.... +|+|.++++|+.++|+||+|||+.+
T Consensus       115 ~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~  194 (361)
T KOG1187|consen  115 EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGC  194 (361)
T ss_pred             hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCC
Confidence            46799999999999999965555   222   3569999995 56666666555 9999999999999999999999974


Q ss_pred             --CceeccCCCCCEEECCCCCeEEecccCccccCC-CCcc----ccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 --RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-GRSY----STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 --~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-~~~~----~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                        .||||||||+|||||.++.+||+|||+++.... ....    .||.+|++||++..+..|.|+|||||||+|+||+||
T Consensus       195 ~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitg  274 (361)
T KOG1187|consen  195 PPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITG  274 (361)
T ss_pred             CCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhC
Confidence              499999999999999999999999999987764 3322    789999999999999999999999999999999999


Q ss_pred             CCCCCc-----------hhhHHhhhcccccccccccc-CCCCh-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          162 KHIPPS-----------HALDLIRDRNIQTLTDSCLE-GQFSS-DEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       162 ~~p~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      +.+...           |.........+.+++|+.+. ..++. .....+..+..+|++.+|..||+|.+|+..|..+..
T Consensus       275 r~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  275 RKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             CcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            976542           22344555578888998876 56664 577779999999999999999999999999966544

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.5e-41  Score=301.64  Aligned_cols=202  Identities=15%  Similarity=0.192  Sum_probs=163.5

Q ss_pred             HHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceecc
Q 015733           20 FIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHD   94 (401)
Q Consensus        20 f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~d   94 (401)
                      ..+|+.+|++++|||||++...++     ++||||+.||.+....-..+.+.+....-++.|++.|+.|||++ ||+|||
T Consensus       223 v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~-GI~HRD  301 (475)
T KOG0615|consen  223 VQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ-GIIHRD  301 (475)
T ss_pred             hHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHc-Cccccc
Confidence            368999999999999999995555     44999999876555555677889999999999999999999999 999999


Q ss_pred             CCCCCEEECCC---CCeEEecccCccccCCC---CccccccccCCccccccCc---cCCCCcchhhHHHHHHHHhCCCCC
Q 015733           95 LNAYRIVFDDD---VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGR---VTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        95 lk~~Nill~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~---~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||+|||+..+   ..+||+|||+|+..+..   .+.||||.|.|||++.+..   +..+.|+||+||+||-+++|.+||
T Consensus       302 iKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPF  381 (475)
T KOG0615|consen  302 IKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPF  381 (475)
T ss_pred             CCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCc
Confidence            99999999866   77899999999998654   4789999999999998753   334889999999999999999999


Q ss_pred             CchhhHH-hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          166 PSHALDL-IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .+...+. ..+.+...-..  ..+..-..++.+..+||.+||..||++|||+.|++++-+
T Consensus       382 S~~~~~~sl~eQI~~G~y~--f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW  439 (475)
T KOG0615|consen  382 SEEYTDPSLKEQILKGRYA--FGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPW  439 (475)
T ss_pred             ccccCCccHHHHHhcCccc--ccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChh
Confidence            8764322 11111111100  111223568899999999999999999999999997544

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-39  Score=290.56  Aligned_cols=192  Identities=19%  Similarity=0.213  Sum_probs=165.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeeccc-----cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQI-----PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~~-----~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      -.....|..++.+++||.||++.+.+|.     +|+||+.||.+.....+.+.+++..+.-++.+|+.||.|||++ |||
T Consensus        69 ~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~-gIi  147 (357)
T KOG0598|consen   69 VRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSK-GII  147 (357)
T ss_pred             HHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhC-Cee
Confidence            4566789999999999999999988884     4999999987777777788999999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||||..|+++|+|||+++...    .+.+++||+.|||||++.+..|+..+|.||+||++|||++|.+||..
T Consensus       148 yRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~  227 (357)
T KOG0598|consen  148 YRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYA  227 (357)
T ss_pred             eccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcC
Confidence            99999999999999999999999999633    23467999999999999999999999999999999999999999987


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      .........+...-     ....|.-.+.+.++++.++|..||.+|.
T Consensus       228 ~~~~~~~~~I~~~k-----~~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  228 EDVKKMYDKILKGK-----LPLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             ccHHHHHHHHhcCc-----CCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence            65443333333221     1223444889999999999999999995

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=295.77  Aligned_cols=207  Identities=17%  Similarity=0.213  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeee-------ccccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFM-------FQIPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~-------~~~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.+.+|+.+|++++|||||++++.       ...+.|||++|+.+ +++.+.+..|+++.+.+++.||+.||.|||++ 
T Consensus        58 ~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~-  136 (313)
T KOG0198|consen   58 SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSK-  136 (313)
T ss_pred             HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3458999999999999999999964       33458999996544 44444333899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECC-CCCeEEecccCccccCC-------CCccccccccCCccccccCc-cCCCCcchhhHHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRD-------GRSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~-------~~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~  159 (401)
                      |+|||||||+|||++. ++.+||+|||+++....       .....||+.|||||++..+. ...++|||||||++.||+
T Consensus       137 g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~  216 (313)
T KOG0198|consen  137 GIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEML  216 (313)
T ss_pred             CEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEecc
Confidence            9999999999999999 79999999999886552       23467999999999999643 445999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||..|+... .. ............ ..+.+|..++.+..+++.+|+..+|.+|||+.+++.+.....
T Consensus       217 Tg~~PW~~~-~~-~~~~~~~ig~~~-~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~  281 (313)
T KOG0198|consen  217 TGKPPWSEF-FE-EAEALLLIGRED-SLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQ  281 (313)
T ss_pred             CCCCcchhh-cc-hHHHHHHHhccC-CCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhc
Confidence            998876542 00 000111111111 223678889999999999999999999999999998655443

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=288.16  Aligned_cols=202  Identities=13%  Similarity=0.181  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+-...|+.+|+.++|||||+++.+..     .+|||||+||.+..+....+.+++..+..++.||+.||++||++ +|
T Consensus        52 ~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~-~I  130 (429)
T KOG0595|consen   52 LVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHEN-NI  130 (429)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3466788999999999999999996665     34999999887777777778999999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCC------CCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDD------VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~------~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |||||||.||||+..      -.+||+|||+|+....+   .+.+|++.|||||++...+|+.|+|+||+|++||++++|
T Consensus       131 iHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g  210 (429)
T KOG0595|consen  131 IHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTG  210 (429)
T ss_pred             eeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhC
Confidence            999999999999865      45899999999998876   367899999999999999999999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      +.||.............   ........++...+..+.+|+...+..+|.+|-++.+-..
T Consensus       211 ~~Pf~a~t~~eL~~~~~---k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~  267 (429)
T KOG0595|consen  211 KPPFDAETPKELLLYIK---KGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFD  267 (429)
T ss_pred             CCCccccCHHHHHHHHh---ccccccCchhhhccCchhhhhhHHHhcCccccCchHHhhh
Confidence            99987654332222110   0111222345556667778888888888888887766543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-38  Score=297.94  Aligned_cols=201  Identities=19%  Similarity=0.267  Sum_probs=173.1

Q ss_pred             HHHHHHhhhCCCeEEEee-eecccc----EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Q 015733           22 VSLVLIASMSSFILLAVI-FMFQIP----SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLN   96 (401)
Q Consensus        22 ~E~~~l~~~~h~niv~~~-~~~~~~----v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk   96 (401)
                      -+|+-|++++|||||.|. .|.+.+    |||||..+-+..+.+.+.++.-...+.|..+||.||+|||.+ .|||||||
T Consensus       161 TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~h-KIIHRDLK  239 (904)
T KOG4721|consen  161 TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLH-KIIHRDLK  239 (904)
T ss_pred             hhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHh-hHhhhccC
Confidence            368899999999999998 677754    999999554444455677889999999999999999999999 99999999


Q ss_pred             CCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHh
Q 015733           97 AYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI  173 (401)
Q Consensus        97 ~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~  173 (401)
                      +-||||+.+..|||+|||-++.....   -+++||..|||||++...+.+.|.||||||||||||+||..|+.+-.    
T Consensus       240 SPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVd----  315 (904)
T KOG4721|consen  240 SPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVD----  315 (904)
T ss_pred             CCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccc----
Confidence            99999999999999999998876543   35789999999999999999999999999999999999999965432    


Q ss_pred             hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ...++..+-...+.-..|..++..+.-||++||+-.|..||||++|+.+|+-..
T Consensus       316 ssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~  369 (904)
T KOG4721|consen  316 SSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIAS  369 (904)
T ss_pred             hheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Confidence            223444555556666788999999999999999999999999999999997543

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5.4e-39  Score=279.63  Aligned_cols=203  Identities=15%  Similarity=0.275  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      +--++||.+|+++.|+|+|.+...+.     .+|+|||+.+.++.+......++.+.+.+++.|++.|+.|+|++ ++||
T Consensus        46 KIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~-n~IH  124 (396)
T KOG0593|consen   46 KIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKN-NCIH  124 (396)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhc-Ceec
Confidence            45689999999999999999986665     45999999998888887778899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccC-CC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSR-DG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~-~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |||||+||||+.+|.+||||||+|+... ++   +.+..|.+|+|||.+.+ .+|+...||||+||++.||++|.+.|++
T Consensus       125 RDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG  204 (396)
T KOG0593|consen  125 RDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPG  204 (396)
T ss_pred             ccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCC
Confidence            9999999999999999999999999876 33   34567999999999998 6899999999999999999999988776


Q ss_pred             hhhH--Hh------------------hhccccccccccc--cCCC---ChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          168 HALD--LI------------------RDRNIQTLTDSCL--EGQF---SSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       168 ~~~~--~~------------------~~~~~~~~~~~~~--~~~~---~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ...-  +.                  .+..+..+.-|..  ..+.   -+..+.-+.+|+..||+.||++|+|.++++.
T Consensus       205 ~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  205 RSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             cchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            4210  00                  0001111111100  0000   1234567899999999999999999999986

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=287.25  Aligned_cols=207  Identities=14%  Similarity=0.189  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+.|.+|+.++.+++||||+++++.+.         .+||||++|+.+..+......+++....+++.|++.||.|||+.
T Consensus        62 ~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~  141 (283)
T PHA02988         62 IDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKY  141 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            367889999999999999999984322         24999999765555555567899999999999999999999984


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc--CccCCCCcchhhHHHHHHHHhCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      .+++||||||+|||++.++.+||+|||+++..... ....++..|+|||++.+  ..++.++|||||||++|||+||..|
T Consensus       142 ~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~P  221 (283)
T PHA02988        142 TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIP  221 (283)
T ss_pred             CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCC
Confidence            48999999999999999999999999998865443 33467899999999976  6799999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |........    ...+.........|..++..+.+|+.+||+.||++|||+.+++..|+.++
T Consensus       222 f~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        222 FENLTTKEI----YDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CCCCCHHHH----HHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            865432211    11121122233455567889999999999999999999999999998764

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-38  Score=295.69  Aligned_cols=200  Identities=12%  Similarity=0.203  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec---ccc--EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF---QIP--SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~---~~~--v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ++-.++|+.+++..+|+|||.++..+   ..+  |||||+|+.+..+.. ...+++.++..|+++++.||+|||.+ ||+
T Consensus       314 keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt-~~~~~E~qIA~Icre~l~aL~fLH~~-gIi  391 (550)
T KOG0578|consen  314 KELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVT-KTRMTEGQIAAICREILQGLKFLHAR-GII  391 (550)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhh-cccccHHHHHHHHHHHHHHHHHHHhc-cee
Confidence            45678899999999999999988222   222  999999876555543 34599999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |||||++|||++.+|.+||+|||++......    .+..|||.|||||+.....|+++.||||||++++||+.|++||..
T Consensus       392 HrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln  471 (550)
T KOG0578|consen  392 HRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN  471 (550)
T ss_pred             eeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccC
Confidence            9999999999999999999999998875543    467899999999999999999999999999999999999999864


Q ss_pred             hhhHHhhhcccccccccc-ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSC-LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +..    -..+..+.... ..-..+..++..+++++.+||..||.+|||+.|+|++
T Consensus       472 E~P----lrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  472 ENP----LRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             CCh----HHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence            310    01111111111 1223467789999999999999999999999999974

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=284.74  Aligned_cols=215  Identities=15%  Similarity=0.155  Sum_probs=173.1

Q ss_pred             hccchhhhhhHHHHHHHHHHhhhCCCeEEEeeeecccc-------EeeecCCcccccccCCCCC-CCHHHHHHHHHHHHH
Q 015733            8 NTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIP-------SYEFHCLTFSNNFSGETQP-MKWAMRLRVALHIAE   79 (401)
Q Consensus         8 ~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~~~-------v~Ey~~~~l~~~~~~~~~~-l~~~~~~~i~~qi~~   79 (401)
                      |.=.|.+.--+...+||.++++++|||+|+++.+.+.+       |+|||..+-..-.. ..++ |++.++++++++++.
T Consensus       143 ~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p-~d~~els~~~Ar~ylrDvv~  221 (576)
T KOG0585|consen  143 RQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCP-PDKPELSEQQARKYLRDVVL  221 (576)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCC-CCcccccHHHHHHHHHHHHH
Confidence            44456666678999999999999999999999776644       99999955433332 3444 999999999999999


Q ss_pred             HHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---------CccccccccCCccccccCc----cCCCC
Q 015733           80 ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---------RSYSTNLAFTPPEYLRTGR----VTPES  146 (401)
Q Consensus        80 ~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~~~----~~~~~  146 (401)
                      ||+|||.+ |||||||||+|+||+++|++||+|||.+.....+         ....|||.|+|||.+.++.    .+.+.
T Consensus       222 GLEYLH~Q-giiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~  300 (576)
T KOG0585|consen  222 GLEYLHYQ-GIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFAL  300 (576)
T ss_pred             HHHHHHhc-CeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhh
Confidence            99999999 9999999999999999999999999998876332         1256899999999998732    45688


Q ss_pred             cchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          147 VMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       147 Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||||+||+||.|+.|+.||.+...-....    .++...+..+..+++...+.+||.++|.+||.+|.++.+|..+.+..
T Consensus       301 DiWalGVTLYCllfG~~PF~~~~~~~l~~----KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt  376 (576)
T KOG0585|consen  301 DIWALGVTLYCLLFGQLPFFDDFELELFD----KIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVT  376 (576)
T ss_pred             hhhhhhhhHHHhhhccCCcccchHHHHHH----HHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceec
Confidence            99999999999999999998765433332    33333333223345788999999999999999999999998877665


Q ss_pred             cc
Q 015733          227 QK  228 (401)
Q Consensus       227 ~~  228 (401)
                      ..
T Consensus       377 ~~  378 (576)
T KOG0585|consen  377 RD  378 (576)
T ss_pred             cC
Confidence            54

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-38  Score=287.02  Aligned_cols=203  Identities=14%  Similarity=0.213  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhhC-CCeEEEeeeecc------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           20 FIVSLVLIASMS-SFILLAVIFMFQ------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        20 f~~E~~~l~~~~-h~niv~~~~~~~------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      -++|+..|++++ |||||.+...+.      .+|||||+..+..++.+++++++++.+..|+.||++||+|+|.+ |+.|
T Consensus        55 nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~-GfFH  133 (538)
T KOG0661|consen   55 NLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKH-GFFH  133 (538)
T ss_pred             HHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhc-Cccc
Confidence            367999999999 999999883222      34999999999999999999999999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      ||+||+|||+..+..+||+|||+|+...+.   +.+..|.+|+|||++.. +.|+.+.|+||+|||++|+.+-++.|++.
T Consensus       134 RDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~  213 (538)
T KOG0661|consen  134 RDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGA  213 (538)
T ss_pred             ccCChhheEecccceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCC
Confidence            999999999999999999999999997665   45677999999999875 67999999999999999999999988774


Q ss_pred             hhHH----------------hhh-cccccccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          169 ALDL----------------IRD-RNIQTLTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       169 ~~~~----------------~~~-~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ..-.                +.. ..+...+.-.+.       ...-+.++.++.++|.+|+.+||++|||+.+++++-
T Consensus       214 sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~p  292 (538)
T KOG0661|consen  214 SEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHP  292 (538)
T ss_pred             cHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCc
Confidence            2110                000 000000000000       011123788999999999999999999999999853

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-37  Score=286.39  Aligned_cols=197  Identities=20%  Similarity=0.273  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeeccc-----cEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQI-----PSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~~-----~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+|-.+|.+| .||.|++++..|+.     .|+||+++| ++.++. +-+.|++.-...++.+|+.||+|||++ ||
T Consensus       118 kYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~-K~Gsfde~caR~YAAeIldAleylH~~-GI  195 (604)
T KOG0592|consen  118 KYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIK-KYGSFDETCARFYAAEILDALEYLHSN-GI  195 (604)
T ss_pred             chhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHH-HhCcchHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            3455688899999 89999999987773     399999965 555554 568899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----------------CccccccccCCccccccCccCCCCcchhhHH
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----------------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      |||||||+|||||+|+++||.|||.|+.....                 .++.||..|.+||++..+..++.+|+|+|||
T Consensus       196 IHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGC  275 (604)
T KOG0592|consen  196 IHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGC  275 (604)
T ss_pred             eeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHH
Confidence            99999999999999999999999999874321                 3478999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||+|+.|.+||.....-+.    +++++.  +.-.+|+..++.+.+||.+.|..||++|+|..+|.++
T Consensus       276 ilyQmlaG~PPFra~Neyli----FqkI~~--l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  276 ILYQMLAGQPPFRAANEYLI----FQKIQA--LDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             HHHHHhcCCCCCccccHHHH----HHHHHH--hcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence            99999999999876432222    222222  1235678888999999999999999999999999874

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-37  Score=290.57  Aligned_cols=197  Identities=18%  Similarity=0.226  Sum_probs=163.4

Q ss_pred             HHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           20 FIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        20 f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .-+|+.+++.++ ||||++++....     .+||||+.|+ +.+.+.. .+++.+..+..+++|+++|++|||++ ||+|
T Consensus        66 i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H~~-gi~H  143 (370)
T KOG0583|consen   66 IKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCHSR-GIVH  143 (370)
T ss_pred             hHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHhC-CEee
Confidence            337999999999 999999995555     3499999975 5555554 78999999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCC-CCeEEecccCccccC-C---CCccccccccCCccccccCc-cC-CCCcchhhHHHHHHHHhCCCCC
Q 015733           93 HDLNAYRIVFDDD-VNPRLSCFGLMKNSR-D---GRSYSTNLAFTPPEYLRTGR-VT-PESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        93 ~dlk~~Nill~~~-~~~kl~Dfg~~~~~~-~---~~~~~~~~~y~aPE~~~~~~-~~-~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||||+|||++.+ +.+||+|||++.... .   ..+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|..||
T Consensus       144 RDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF  223 (370)
T KOG0583|consen  144 RDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPF  223 (370)
T ss_pred             CCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCC
Confidence            9999999999999 999999999999872 2   35679999999999999866 65 7899999999999999999999


Q ss_pred             CchhhHHhhhccccccccccccCCCChHH-HHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDE-GTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .+...........    ..  .-.+|..+ +.++..|+.+||..||.+|+|+.+|+.+=+
T Consensus       224 ~d~~~~~l~~ki~----~~--~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w  277 (370)
T KOG0583|consen  224 DDSNVPNLYRKIR----KG--EFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPW  277 (370)
T ss_pred             CCccHHHHHHHHh----cC--CccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChh
Confidence            8743322222211    11  12356666 999999999999999999999999995433

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-37  Score=295.24  Aligned_cols=201  Identities=18%  Similarity=0.229  Sum_probs=171.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      -+.-..-+||.+|+-+.|||++.++..+.     .+|.||++||-+..+.-.+++|++.++.++++||+.|+.|+|.. +
T Consensus        54 s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~-~  132 (786)
T KOG0588|consen   54 SQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAF-N  132 (786)
T ss_pred             ccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhh-c
Confidence            34566788999999999999999995544     44999999765555555778999999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|+|||..+.+||+|||.|.....+   .+.||+|.|.+||++.+.+| +.++||||.|||||.|+||+.||
T Consensus       133 icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPF  212 (786)
T KOG0588|consen  133 ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPF  212 (786)
T ss_pred             ceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCC
Confidence            999999999999999999999999999986665   46799999999999999876 67999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .++        ++..+....-++  +.|..++.++.+|+.+||+.||.+|.|+++|+.+-.
T Consensus       213 dDd--------Nir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~  265 (786)
T KOG0588|consen  213 DDD--------NIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPF  265 (786)
T ss_pred             CCc--------cHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCch
Confidence            764        333333333333  347889999999999999999999999999998643

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=268.17  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=168.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .|-+...+|..+|+.+.||.++.+++.++     .+||||++|+-+..++++.++++++.++-++.||+.||+|||++ +
T Consensus        86 KQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~-~  164 (355)
T KOG0616|consen   86 KQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSL-D  164 (355)
T ss_pred             HHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhc-C
Confidence            46678888999999999999999995555     34999999987777777888999999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      |++|||||+|||+|.+|.+||.|||+|+.....+ +.||||.|+|||++.+.+++.++|.|||||++|||+.|.+||..+
T Consensus       165 iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~  244 (355)
T KOG0616|consen  165 IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDD  244 (355)
T ss_pred             eeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCC
Confidence            9999999999999999999999999999977664 569999999999999999999999999999999999999999876


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      ........++    ...  -.+|.-.+.++++|+..+|+.|-.+|
T Consensus       245 ~~~~iY~KI~----~~~--v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  245 NPIQIYEKIL----EGK--VKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             ChHHHHHHHH----hCc--ccCCcccCHHHHHHHHHHHhhhhHhh
Confidence            5433322222    222  24688889999999999999999999

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-37  Score=303.46  Aligned_cols=208  Identities=21%  Similarity=0.320  Sum_probs=169.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeee-ecc----ccEeeecCCcccccccC----------C----CCCCCHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIF-MFQ----IPSYEFHCLTFSNNFSG----------E----TQPMKWAMRLRVALH   76 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~-~~~----~~v~Ey~~~~l~~~~~~----------~----~~~l~~~~~~~i~~q   76 (401)
                      ++.+|.+|+.++..++|||||++++ +.+    .+|+|||..|.++.+..          .    ..+|+..+.+.|+.|
T Consensus       532 ~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~Q  611 (774)
T KOG1026|consen  532 ARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQ  611 (774)
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHH
Confidence            4689999999999999999999883 333    34999999544443321          1    234899999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCccc------cccccCCccccccCccCCCCcchh
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS------TNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      ||.||.||-++ .+|||||..+|+||+++..|||+|||+++.......+.      -.++|||||.+..+++|.+|||||
T Consensus       612 IAaGM~YLs~~-~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs  690 (774)
T KOG1026|consen  612 IAAGMEYLSSH-HFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWS  690 (774)
T ss_pred             HHHHHHHHHhC-cccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhh
Confidence            99999999999 99999999999999999999999999999877665432      247999999999999999999999


Q ss_pred             hHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          151 FGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       151 lG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |||||||+++ |..|+.+-..+.+    +..+....+ -+.|..+|.++.+||..||+.+|.+|||+++|-..|+.....
T Consensus       691 ~GVvLWEIFsyG~QPy~glSn~EV----Ie~i~~g~l-L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  691 FGVVLWEIFSYGKQPYYGLSNQEV----IECIRAGQL-LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             hhhhhhhhhccccCcccccchHHH----HHHHHcCCc-ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence            9999999998 5566555332221    222222222 457899999999999999999999999999999999887653

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.8e-37  Score=283.64  Aligned_cols=217  Identities=18%  Similarity=0.224  Sum_probs=169.1

Q ss_pred             CchhhhhhccchhhhhhHHHHHHHHHHhhhCCCeEEEeee-ecc------ccEeeecCCcccccccCCCCCCCHHHHHHH
Q 015733            1 MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIF-MFQ------IPSYEFHCLTFSNNFSGETQPMKWAMRLRV   73 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~-~~~------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i   73 (401)
                      ||||--+|.-   ..-+.--++||.+|++++|||||++.. ++.      ++|+|||+.+|..++......|++.++..+
T Consensus       147 LKKvr~d~~~---~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~  223 (560)
T KOG0600|consen  147 LKKVRFDNEK---EGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCY  223 (560)
T ss_pred             EEEeecccCC---CcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccchhhhhhcCCCcccChHHHHHH
Confidence            4667666642   234445578999999999999999883 222      459999999888888877888999999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCcccccc-CccCCCCc
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRT-GRVTPESV  147 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~-~~~~~~~D  147 (401)
                      +.||+.||+|||++ ||+|||||++|||||.+|.+||+|||+|+......     ...-|.+|.|||.+.+ ..|+...|
T Consensus       224 mkQLl~Gl~~cH~~-gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVD  302 (560)
T KOG0600|consen  224 MKQLLEGLEYCHSR-GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVD  302 (560)
T ss_pred             HHHHHHHHHHHhhc-CeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCccccccee
Confidence            99999999999999 99999999999999999999999999999755433     3345899999999998 46999999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhhhc-----------ccc--cccc-ccccC--CC-------ChHHHHHHHHHHHH
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIRDR-----------NIQ--TLTD-SCLEG--QF-------SSDEGTELVRLASR  204 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~~~-----------~~~--~~~~-~~~~~--~~-------~~~~~~~l~~li~~  204 (401)
                      +||.||||.||++|++.+.+...-..-..           .+.  .+.. ..+..  .+       -...+....+|+..
T Consensus       303 lWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~  382 (560)
T KOG0600|consen  303 LWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEK  382 (560)
T ss_pred             ehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHH
Confidence            99999999999999988876421110000           011  1100 00000  01       12356778999999


Q ss_pred             hcccCCCCCCCHHHHHH
Q 015733          205 CLQYEPRERPNPRSLVT  221 (401)
Q Consensus       205 cl~~~p~~Rps~~~vl~  221 (401)
                      +|..||++|.|+.+++.
T Consensus       383 lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  383 LLSLDPDKRGTASSALQ  399 (560)
T ss_pred             HhccCccccccHHHHhc
Confidence            99999999999999876

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=300.12  Aligned_cols=212  Identities=16%  Similarity=0.222  Sum_probs=179.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .|+.+|+.|..++.+++|||||++.+...     +.|.|||+++ |+..+..+++.+++-+...+.++|+.||.||.+. 
T Consensus       672 kqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm-  750 (996)
T KOG0196|consen  672 KQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDM-  750 (996)
T ss_pred             HHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhc-
Confidence            57899999999999999999999985433     3388999965 5555555678899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-----cccc--ccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYST--NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~--~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      |+|||||..+|||++.+..+|++|||+++...+..     +..|  ..+|.|||.+...++|.+|||||||||+||.++ 
T Consensus       751 ~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSy  830 (996)
T KOG0196|consen  751 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY  830 (996)
T ss_pred             CchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEeccc
Confidence            99999999999999999999999999999865443     1112  368999999999999999999999999999876 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCCC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV  232 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~~  232 (401)
                      |..|+.+....     .....+...++-+.|.+||..+.+||..||++|-..||.+.+|+..|.++...+..
T Consensus       831 GERPYWdmSNQ-----dVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~S  897 (996)
T KOG0196|consen  831 GERPYWDMSNQ-----DVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNS  897 (996)
T ss_pred             CCCcccccchH-----HHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchh
Confidence            77887664332     23333444566677899999999999999999999999999999999999876543

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.4e-36  Score=284.66  Aligned_cols=207  Identities=20%  Similarity=0.322  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCc-ccccccCC---------------------------
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSGE---------------------------   61 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~~---------------------------   61 (401)
                      ...|.+|+.++..+ +||||+.++..+.      ..||||++|+ +...+...                           
T Consensus        54 ~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (338)
T cd05102          54 HKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRV  133 (338)
T ss_pred             HHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhcc
Confidence            35799999999999 8999999884322      3489999965 33333211                           


Q ss_pred             ----------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCC
Q 015733           62 ----------------------------------TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVN  107 (401)
Q Consensus        62 ----------------------------------~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~  107 (401)
                                                        ..++++..+..++.||+.||.|||++ ||+||||||+|||++.++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDiKp~Nil~~~~~~  212 (338)
T cd05102         134 DRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASR-KCIHRDLAARNILLSENNV  212 (338)
T ss_pred             ccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCccceEEEcCCCc
Confidence                                              24588999999999999999999999 9999999999999999999


Q ss_pred             eEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccc
Q 015733          108 PRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQT  180 (401)
Q Consensus       108 ~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~  180 (401)
                      +||+|||+++......      ...+++.|+|||++.+..++.++|||||||++|||++ |..||........    ...
T Consensus       213 ~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~----~~~  288 (338)
T cd05102         213 VKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE----FCQ  288 (338)
T ss_pred             EEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH----HHH
Confidence            9999999998643221      2234678999999998889999999999999999997 8888765321110    001


Q ss_pred             cccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ..........+..++..+.+|+.+||+.||.+|||+.+|++.|+.+..
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         289 RLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            111111223455677889999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=288.41  Aligned_cols=216  Identities=19%  Similarity=0.285  Sum_probs=179.1

Q ss_pred             hhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           12 MIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        12 ~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      +.+.+..+|++|..++.+++|||||++++..-     .+|||+|+|| |...+...+..++..++.+++.++++||+|||
T Consensus       200 ~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh  279 (474)
T KOG0194|consen  200 LTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLH  279 (474)
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHH
Confidence            44788999999999999999999999995332     3399999975 55556555557999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc---c-ccccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS---Y-STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~---~-~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      ++ ++|||||-.+|+|++.++.+||+|||+++.......   . .-...|+|||.+..+.+++++|||||||++||+++ 
T Consensus       280 ~k-~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~  358 (474)
T KOG0194|consen  280 SK-NCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFEN  358 (474)
T ss_pred             HC-CCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeecc
Confidence            99 999999999999999999999999999887642211   1 23578999999999999999999999999999999 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCCC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV  232 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~~  232 (401)
                      |..|+++......    ...+.....+...|...+..+..++.+||..+|++||||.++.+.|+.+......
T Consensus       359 g~~Py~g~~~~~v----~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~  426 (474)
T KOG0194|consen  359 GAEPYPGMKNYEV----KAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEA  426 (474)
T ss_pred             CCCCCCCCCHHHH----HHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcccc
Confidence            6777766433222    2233344556677788899999999999999999999999999999988776544

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-36  Score=273.10  Aligned_cols=203  Identities=16%  Similarity=0.201  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecccc-----EeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQIP-----SYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~~~-----v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+|+..++.++||||+.++-.|-..     ||.||.+| +++++.. -...+++..+..|.+++++||.|||.+ |.
T Consensus        69 d~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~-G~  147 (516)
T KOG0582|consen   69 DALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN-GH  147 (516)
T ss_pred             HHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            6778899999999999999998444322     99999955 4444432 134599999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCcccccc--CccCCCCcchhhHHHHHHHHh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||||||+.||||+++|.|||+|||.+.....+        .++.||++|||||++..  ..|+.|+||||||++..||.+
T Consensus       148 IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~  227 (516)
T KOG0582|consen  148 IHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAH  227 (516)
T ss_pred             eecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhc
Confidence            99999999999999999999999987653322        34578999999999654  469999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccc----cccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQT----LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |..||.....-..--..++.    +....+..+-....+..++++|..||.+||.+|||+++++.
T Consensus       228 G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  228 GHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             CCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            99998653211000001111    00001111112235678999999999999999999999986

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5e-36  Score=270.25  Aligned_cols=198  Identities=17%  Similarity=0.270  Sum_probs=169.3

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      .+.+||.+++.++|||||.++..|+     ++||||..+|.+..+..+.+.|++.++..+++||++|+.|+|.+ +++||
T Consensus        99 hIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHkn-rVvHR  177 (668)
T KOG0611|consen   99 HIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKN-RVVHR  177 (668)
T ss_pred             HHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhc-cceec
Confidence            4678999999999999999996666     44999999887777777888999999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |||.+|||+|.++++||+|||++......   +++||++-|.+||++++.+| ++..|.|||||+||.|+.|..||.+..
T Consensus       178 DLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D  257 (668)
T KOG0611|consen  178 DLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD  257 (668)
T ss_pred             ccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCch
Confidence            99999999999999999999999887665   57899999999999999776 678999999999999999999988754


Q ss_pred             hHHhhhccccccccccccCCC-ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          170 LDLIRDRNIQTLTDSCLEGQF-SSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ...        ++..+.++.+ -+..+.+..-||++||-.||++|.|+.+|..+.+-
T Consensus       258 hk~--------lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWv  306 (668)
T KOG0611|consen  258 HKR--------LVRQISRGAYREPETPSDASGLIRWMLMVNPERRATIEDIASHWWV  306 (668)
T ss_pred             HHH--------HHHHhhcccccCCCCCchHHHHHHHHHhcCcccchhHHHHhhhhee
Confidence            322        2222222222 34456678899999999999999999999887653

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=5.8e-36  Score=281.98  Aligned_cols=199  Identities=16%  Similarity=0.207  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++.+++||||+.+...++     .+||||++|+.+..+....+.+++..+..++.||+.||+|||+. ||+
T Consensus        39 ~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~iv  117 (323)
T cd05571          39 VAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSC-DVV  117 (323)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-CeE
Confidence            356888999999999999998874443     34999999765554444567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||+||..||..
T Consensus       118 HrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~  197 (323)
T cd05571         118 YRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             eCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCC
Confidence            999999999999999999999999875322    2345689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ............    .  ...+|...+.++.++|.+||+.||.+||     ++.+++.+
T Consensus       198 ~~~~~~~~~~~~----~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         198 QDHEKLFELILM----E--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             CCHHHHHHHHHc----C--CCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            432221111111    1  1245667788999999999999999999     78888763

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.9e-36  Score=255.82  Aligned_cols=205  Identities=15%  Similarity=0.185  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeeccc-----cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQI-----PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~~-----~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      -++.-++|+.+|+++. ||+|+.+...++.     +|+|.|+.|-+..+..+...++++...++++|+..|++|||.+ +
T Consensus        65 ~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~-~  143 (411)
T KOG0599|consen   65 MREATRQEISILRQVMGHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHAR-N  143 (411)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHh-h
Confidence            3577889999999985 9999999865553     3999999665555555778899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCcccccc------CccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRT------GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||||||||+|||++++.++||+|||+++....+.   ..||||+|+|||.+..      ..|+...|+||+||++|.|+.
T Consensus       144 IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLa  223 (411)
T KOG0599|consen  144 IVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLA  223 (411)
T ss_pred             hhhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHc
Confidence            9999999999999999999999999999988774   4689999999998863      358889999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |.+||.....-..-..+...-.  .+..+--.+.+....+||.+||+.||.+|.|++|++.+-
T Consensus       224 GcpPFwHRkQmlMLR~ImeGky--qF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHp  284 (411)
T KOG0599|consen  224 GCPPFWHRKQMLMLRMIMEGKY--QFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHP  284 (411)
T ss_pred             CCCchhHHHHHHHHHHHHhccc--ccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcCh
Confidence            9999865432221111111100  111222346788899999999999999999999999753

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-35  Score=278.02  Aligned_cols=199  Identities=17%  Similarity=0.188  Sum_probs=160.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        36 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  114 (312)
T cd05585          36 EVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLHKF-NV  114 (312)
T ss_pred             HHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            4467889999999999999999874433     34999999765544444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|+||..||.
T Consensus       115 ~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~  194 (312)
T cd05585         115 IYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFY  194 (312)
T ss_pred             EeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcC
Confidence            99999999999999999999999998763322    23568999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN---PRSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps---~~~vl~  221 (401)
                      ..........    +...  ...++...+..+.+++.+||+.||.+||+   +.+++.
T Consensus       195 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         195 DENVNEMYRK----ILQE--PLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             CCCHHHHHHH----HHcC--CCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence            5432221111    1111  12356677889999999999999999986   455554

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.2e-35  Score=278.50  Aligned_cols=199  Identities=15%  Similarity=0.205  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.+++.++||||+.+...+.     .+||||++|+.+.........+++..+..++.||+.||.|||++ ||+
T Consensus        39 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~iv  117 (328)
T cd05593          39 VAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSG-KIV  117 (328)
T ss_pred             HHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-CeE
Confidence            457889999999999999998874443     34999999765554444566799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       118 HrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~  197 (328)
T cd05593         118 YRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (328)
T ss_pred             ecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCC
Confidence            9999999999999999999999998763221    235689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ............      ....+|...+.++.++|.+||+.||.+||     ++.+++.+
T Consensus       198 ~~~~~~~~~~~~------~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         198 QDHEKLFELILM------EDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             CCHHHHHHHhcc------CCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            432221111111      11235667788999999999999999997     78888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.5e-35  Score=276.57  Aligned_cols=200  Identities=16%  Similarity=0.156  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        61 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  139 (329)
T PTZ00263         61 QVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSK-DI  139 (329)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3467899999999999999999884443     34999999764444444556789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.++.+||+|||+++..... ....||+.|+|||++.+..++.++|||||||++|+|+||..||.+..
T Consensus       140 vH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  219 (329)
T PTZ00263        140 IYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT  219 (329)
T ss_pred             eecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999876543 34578999999999998889999999999999999999999986543


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      ......    .+...  ...+|...+..+.+||.+||+.||.+||+     +.+++.+
T Consensus       220 ~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        220 PFRIYE----KILAG--RLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             HHHHHH----HHhcC--CcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            221111    11111  12345556778999999999999999997     6777754

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-35  Score=273.57  Aligned_cols=201  Identities=17%  Similarity=0.176  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+....+.+++..+..++.|++.||.|||++ |+
T Consensus        44 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  122 (291)
T cd05612          44 QEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSK-EI  122 (291)
T ss_pred             HHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3467889999999999999999884333     34999999765444444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.++.+||+|||+++..... ....|++.|+|||++.+..++.++|||||||++|+|++|+.||....
T Consensus       123 ~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~  202 (291)
T cd05612         123 VYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDN  202 (291)
T ss_pred             eecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999998876543 34568999999999998889999999999999999999999986543


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTAL  223 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~l  223 (401)
                      .......    +...  ...+|...+..+.+||.+||+.||.+||+     +.+++.+-
T Consensus       203 ~~~~~~~----i~~~--~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~  255 (291)
T cd05612         203 PFGIYEK----ILAG--KLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHR  255 (291)
T ss_pred             HHHHHHH----HHhC--CcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCc
Confidence            2211111    1111  12345566788999999999999999995     88887653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=299.77  Aligned_cols=208  Identities=21%  Similarity=0.320  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-eecc----ccEeeecCCc-ccccccCC------CCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FMFQ----IPSYEFHCLT-FSNNFSGE------TQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~~~----~~v~Ey~~~~-l~~~~~~~------~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+|++|..+|+.++|||||+++ .+++    ..++|||.|| |+..+.+.      ...|+....+.++.|||+|++|
T Consensus       738 ~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~Y  817 (1025)
T KOG1095|consen  738 EVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNY  817 (1025)
T ss_pred             HHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHH
Confidence            357999999999999999999888 4444    3399999965 55555544      5678999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCcc------ccccccCCccccccCccCCCCcchhhHHHHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY------STNLAFTPPEYLRTGRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  157 (401)
                      |+++ ++|||||..+|+||+....+||+|||+|+.......+      .-...|||||.+.++.+|.|+|||||||+|||
T Consensus       818 Le~~-~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWE  896 (1025)
T KOG1095|consen  818 LESK-HFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWE  896 (1025)
T ss_pred             HHhC-CCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHH
Confidence            9999 9999999999999999999999999999965444322      12468999999999999999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhhccccc-cccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          158 LLSGKHIPPSHALDLIRDRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ++|...+|+.....    ..+.. +.... +-+.|..|+..+.+||..||+.+|++||++..|++.+..+...
T Consensus       897 ifslG~~PY~~~~n----~~v~~~~~~gg-RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  897 IFSLGATPYPSRSN----FEVLLDVLEGG-RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             HHhCCCCCCCCcch----HHHHHHHHhCC-ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence            99965444332111    11111 11112 4466888999999999999999999999999999988776544

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=6.5e-35  Score=250.02  Aligned_cols=203  Identities=17%  Similarity=0.225  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..-++||+.|+.++|+||+++...+.     .+|+|||+.++...+.++...|+...+..++.++++||+|||++ .|+|
T Consensus        46 ~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~-~IlH  124 (318)
T KOG0659|consen   46 RTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSK-WILH  124 (318)
T ss_pred             HHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhh-hhhc
Confidence            45689999999999999999985554     34999999999999999999999999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |||||.|+|++++|.+||+|||+++...+..    ...-|..|.|||.+.+ ..|+...|+||.|||+.||+-|.+.|++
T Consensus       125 RDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG  204 (318)
T KOG0659|consen  125 RDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPG  204 (318)
T ss_pred             ccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCC
Confidence            9999999999999999999999999876543    2246889999999988 4699999999999999999999877665


Q ss_pred             hhhHHhhh-----------c---cccccc---------cccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRD-----------R---NIQTLT---------DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~-----------~---~~~~~~---------~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...-..-.           .   ....+.         .+.. ..+-+..+.+..+|+.++|..||.+|+|+.+++++
T Consensus       205 ~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~-~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  205 DSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPL-NNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             CchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCcc-ccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            42110000           0   001110         0111 11223457778999999999999999999999875

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1e-35  Score=278.12  Aligned_cols=196  Identities=16%  Similarity=0.204  Sum_probs=166.7

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      ...+|+.++++++|||||.++..++     ..|.||+.|.+... ...++.++++.+..++.|+++||.|||+. +|+||
T Consensus        47 ~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g~L~~i-l~~d~~lpEe~v~~~a~~LVsaL~yLhs~-rilhr  124 (808)
T KOG0597|consen   47 NLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVGDLFTI-LEQDGKLPEEQVRAIAYDLVSALYYLHSN-RILHR  124 (808)
T ss_pred             HHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhhhHHHH-HHhccCCCHHHHHHHHHHHHHHHHHHHhc-Ccccc
Confidence            3788999999999999999995444     23999999955554 44678899999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |+||.|||++..|++|+||||+++....++    +..|||-|||||...+.+|+..+|+||+||++||+++|++||....
T Consensus       125 d~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s  204 (808)
T KOG0597|consen  125 DMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS  204 (808)
T ss_pred             cCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence            999999999999999999999999877664    3468999999999999999999999999999999999999987654


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......+..+      ....|...+..+..++...|.+||.+|.|-.+++.+
T Consensus       205 i~~Lv~~I~~d------~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  205 ITQLVKSILKD------PVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             HHHHHHHHhcC------CCCCcccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence            32222222222      123466889999999999999999999999998863

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=278.10  Aligned_cols=207  Identities=20%  Similarity=0.297  Sum_probs=167.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      |-+.|.+||-++++-+|-||+-|.+..-    ..|+-+|.|. |..+++.....|+..+.+.|+.||++||.|||.+ +|
T Consensus       431 qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK-~I  509 (678)
T KOG0193|consen  431 QLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAK-NI  509 (678)
T ss_pred             HHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhh-hh
Confidence            5689999999999999999998884433    2388999975 6666666678899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC--C----CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD--G----RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~--~----~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ||||||+.||++.+++.|||+|||++.....  +    ....|...|||||+++.   .+|++.+||||||+|+|||+||
T Consensus       510 IHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg  589 (678)
T KOG0193|consen  510 IHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTG  589 (678)
T ss_pred             hhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhC
Confidence            9999999999999999999999999876332  1    23356789999999985   4799999999999999999999


Q ss_pred             CCCCCchhhHHhhhcccccccccc-cc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSC-LE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ..|+.....+    .++-.+ ... +.   ......++.++.+|+..||..++++||.+.+|+..|+.+.+
T Consensus       590 ~lPysi~~~d----qIifmV-GrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  590 ELPYSIQNRD----QIIFMV-GRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             cCCcCCCChh----heEEEe-cccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence            9997643221    111111 111 11   12245688899999999999999999999999998877765

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=275.49  Aligned_cols=200  Identities=19%  Similarity=0.163  Sum_probs=170.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc------ccEeeecCCccccc-ccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ------IPSYEFHCLTFSNN-FSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~------~~v~Ey~~~~l~~~-~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ++.-.+|+.+++++.|||||.+...+.      ..||+||+||.+.. +... +..++++.+..|+.|++.|+.|||++ 
T Consensus        47 r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~-  125 (426)
T KOG0589|consen   47 RRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN-  125 (426)
T ss_pred             hHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh-
Confidence            346788999999999999999984333      34999999765444 4433 46789999999999999999999988 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +|+|||||+.||+++.++.|||+|||+|+...+..    +..||+.||+||.+.+.+|+.|+|||||||++|||++-+.+
T Consensus       126 ~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~a  205 (426)
T KOG0589|consen  126 RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPA  205 (426)
T ss_pred             hhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccc
Confidence            99999999999999999999999999999977653    56799999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |...........+....     ..+.|..++.++..+|..||..+|..||++.+++..
T Consensus       206 F~a~~m~~Li~ki~~~~-----~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  206 FKASNMSELILKINRGL-----YSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             cCccchHHHHHHHhhcc-----CCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            87765554444444332     335678889999999999999999999999999874

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=7.2e-35  Score=273.73  Aligned_cols=209  Identities=13%  Similarity=0.186  Sum_probs=166.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..++|..|+.+++.++||||+++++...    ..|+||+++ ++...+......+++..+++++.||+.||+|||++ |+
T Consensus        52 ~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~i  130 (316)
T cd05108          52 ANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEER-RL  130 (316)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhc-Ce
Confidence            3578999999999999999999884333    348999985 45565555566789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      +||||||+|||++.++.+||+|||+++.......      ..++..|++||.+.+..++.++|||||||++|||++ |..
T Consensus       131 iH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~  210 (316)
T cd05108         131 VHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK  210 (316)
T ss_pred             eccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999987543321      123568999999998899999999999999999998 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ||.+......     ..+.........+..++.++.+++.+||..+|++|||+.+++..|..+....
T Consensus       211 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         211 PYDGIPASEI-----SSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             CCCCCCHHHH-----HHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence            8754322111     1111112222334556778999999999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=6.6e-35  Score=269.47  Aligned_cols=204  Identities=19%  Similarity=0.276  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRVA   74 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i~   74 (401)
                      ....|.+|+.++.+++|||++.+.....     ..+|||++++ +...+...               ...+++..+..++
T Consensus        51 ~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  130 (283)
T cd05048          51 VQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIA  130 (283)
T ss_pred             HHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHH
Confidence            4567999999999999999999884433     3499999864 43333221               1568999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .|++.||.|||+. |++||||||+||++++++.++|+|||++.......      ...+++.|+|||.+.++.++.++||
T Consensus       131 ~~l~~al~~lH~~-~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv  209 (283)
T cd05048         131 IQIAAGMEYLSSH-HFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDI  209 (283)
T ss_pred             HHHHHHHHHHHhC-CeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhH
Confidence            9999999999999 99999999999999999999999999987643321      2345678999999988889999999


Q ss_pred             hhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          149 YSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       149 ~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |||||++|||++ |..||.+.......     ..+........+..++.++.+|+.+||+.||.+||++.+|++.|..
T Consensus       210 ~slG~il~el~~~g~~p~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         210 WSFGVVLWEIFSYGLQPYYGFSNQEVI-----EMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCHHHHH-----HHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            999999999998 88887653322111     1111122234566788999999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=3e-35  Score=277.11  Aligned_cols=199  Identities=16%  Similarity=0.218  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++..++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |++
T Consensus        39 ~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~iv  117 (323)
T cd05595          39 VAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR-DVV  117 (323)
T ss_pred             HHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            356788999999999999999874443     34999999765554444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+..++.++|||||||++|||++|..||..
T Consensus       118 H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  197 (323)
T cd05595         118 YRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             ecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999998753221    235689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ..........    ...  ...+|..++.++.++|.+||+.||.+||     ++.+++++
T Consensus       198 ~~~~~~~~~~----~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         198 QDHERLFELI----LME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             CCHHHHHHHH----hcC--CCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            4322111111    111  1235666788999999999999999998     78888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.7e-35  Score=257.71  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.--++||.+|.+.+|||||.+-....       .+|||||+.++..++..-..++...++.-+..|+++|++|||.. .
T Consensus       119 PItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~-w  197 (419)
T KOG0663|consen  119 PITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN-W  197 (419)
T ss_pred             cchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc-e
Confidence            445689999999999999998873322       34999999988888877678999999999999999999999999 8


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+|||||++|+|+++.|.+||+|||+|+..++.    +...-|.+|.|||.+.+. .|+...|+||+|||+.|++++.+.
T Consensus       198 ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPl  277 (419)
T KOG0663|consen  198 ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPL  277 (419)
T ss_pred             eEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCC
Confidence            999999999999999999999999999987665    334568999999999985 599999999999999999999988


Q ss_pred             CCchhhHHhhhcc-------------------------ccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          165 PPSHALDLIRDRN-------------------------IQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       165 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      |++...-..-..+                         ........++..|+.. .+....+|+..+|..||.+|.|+++
T Consensus       278 f~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~  357 (419)
T KOG0663|consen  278 FPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAED  357 (419)
T ss_pred             CCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHH
Confidence            8764321111111                         1111111122223222 5678899999999999999999999


Q ss_pred             HHHHH
Q 015733          219 LVTAL  223 (401)
Q Consensus       219 vl~~l  223 (401)
                      .+.+=
T Consensus       358 ~L~h~  362 (419)
T KOG0663|consen  358 GLKHE  362 (419)
T ss_pred             hhccc
Confidence            98753

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=8.1e-35  Score=269.36  Aligned_cols=202  Identities=14%  Similarity=0.220  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..|.+|+.++.+++|+|++.+...+.     ..||||++|+.+. .+.. ....+++..+..++.|++.||.|||+. |+
T Consensus        45 ~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  123 (285)
T cd05631          45 AMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE-RI  123 (285)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC-CE
Confidence            46889999999999999999874433     3499999976443 3322 345799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+|||+++++.+||+|||++......   ....|++.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       124 iH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  203 (285)
T cd05631         124 VYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRK  203 (285)
T ss_pred             EeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999875433   234689999999999988999999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      .............+..  ....++...+.++.+|+.+||+.||.+||+     +++++++
T Consensus       204 ~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         204 RKERVKREEVDRRVKE--DQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             CCcchhHHHHHHHhhc--ccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence            3221111011111111  122355667889999999999999999997     7787763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=7.1e-35  Score=275.52  Aligned_cols=209  Identities=17%  Similarity=0.215  Sum_probs=161.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++.+++||||++++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++.+|
T Consensus        46 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i  125 (331)
T cd06649          46 IRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQI  125 (331)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCE
Confidence            3467999999999999999999884433     34999999765555554556799999999999999999999986369


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      +||||||+|||++.++.+||+|||++......  ....|++.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       126 vH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  205 (331)
T cd06649         126 MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPP  205 (331)
T ss_pred             EcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999998765432  3456899999999999888999999999999999999999998543


Q ss_pred             hhHHhhhcccc--------------------------------------ccccccc---cCCC-ChHHHHHHHHHHHHhc
Q 015733          169 ALDLIRDRNIQ--------------------------------------TLTDSCL---EGQF-SSDEGTELVRLASRCL  206 (401)
Q Consensus       169 ~~~~~~~~~~~--------------------------------------~~~~~~~---~~~~-~~~~~~~l~~li~~cl  206 (401)
                      ...........                                      .+.+...   .... ....+.++.+||.+||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  285 (331)
T cd06649         206 DAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCL  285 (331)
T ss_pred             CHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHc
Confidence            21111000000                                      0000000   0011 1235778999999999


Q ss_pred             ccCCCCCCCHHHHHHHHH
Q 015733          207 QYEPRERPNPRSLVTALV  224 (401)
Q Consensus       207 ~~~p~~Rps~~~vl~~l~  224 (401)
                      ++||++|||+.+++.+..
T Consensus       286 ~~~P~~Rpt~~ell~h~~  303 (331)
T cd06649         286 IKNPAERADLKMLMNHTF  303 (331)
T ss_pred             cCCcccCCCHHHHhcChH
Confidence            999999999999998644

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.1e-34  Score=294.02  Aligned_cols=376  Identities=15%  Similarity=0.098  Sum_probs=239.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC----------CCCCCCHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG----------ETQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~----------~~~~l~~~~~~~i~~qi~~   79 (401)
                      ..++|.+|+.++++++|||++.++....     ..||||++|+ +...+..          ....+++..+++++.||+.
T Consensus        45 ~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~  124 (932)
T PRK13184         45 LKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICA  124 (932)
T ss_pred             HHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHH
Confidence            4568999999999999999999884433     3499999975 4333321          1234677888999999999


Q ss_pred             HHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----------------------CccccccccCCcccc
Q 015733           80 ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----------------------RSYSTNLAFTPPEYL  137 (401)
Q Consensus        80 ~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----------------------~~~~~~~~y~aPE~~  137 (401)
                      ||+|||++ ||+||||||+||+++.++.++|+|||+++.....                      ....||+.|+|||++
T Consensus       125 AL~yLHs~-GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l  203 (932)
T PRK13184        125 TIEYVHSK-GVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL  203 (932)
T ss_pred             HHHHHHHC-CccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHh
Confidence            99999999 9999999999999999999999999998765110                      123579999999999


Q ss_pred             ccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-CH
Q 015733          138 RTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-NP  216 (401)
Q Consensus       138 ~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~  216 (401)
                      .+..++.++|||||||++|||+||..||...........  ..+..+. .......++..+.+++.+||+.||++|| ++
T Consensus       204 ~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~--~~i~~P~-~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~  280 (932)
T PRK13184        204 LGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYR--DVILSPI-EVAPYREIPPFLSQIAMKALAVDPAERYSSV  280 (932)
T ss_pred             cCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhh--hhccChh-hccccccCCHHHHHHHHHHccCChhhCcCHH
Confidence            988999999999999999999999999865321111000  1111111 0011134667899999999999999996 56


Q ss_pred             HHHHHHHHccccCCCC--CCccc-------------------cCCCCCCC------------------------------
Q 015733          217 RSLVTALVTLQKDTEV--PSHVL-------------------MGIPHGAA------------------------------  245 (401)
Q Consensus       217 ~~vl~~l~~~~~~~~~--~~~~~-------------------~~~~~~~~------------------------------  245 (401)
                      +++.+.|+........  +....                   .+.....+                              
T Consensus       281 eeLl~~Le~~lq~~p~w~~~~~l~~~~~~~wk~~e~iLlsk~~~~l~~s~~~w~s~~is~ie~~~~~rie~~~~~~~~~~  360 (932)
T PRK13184        281 QELKQDLEPHLQGSPEWTVKATLMTKKKSCWKFYEPILLSKYFPMLESSPAQWYSLMISKIESSSETRLEYTVTKKGLHE  360 (932)
T ss_pred             HHHHHHHHHHHhcCcccccccccccccchhccccchhhhhhhcccccCCchhheeccccccccccceeeeeeeccCcccc
Confidence            6677766654321100  00000                   00000000                              


Q ss_pred             --CCCCCCCCChhhhhhhh-----------HH-HHHHHhhcCCCCc------cchhhhhh--hh-------------c--
Q 015733          246 --ALPLSPLGDACLRMDLT-----------AI-HEILEKLGYKDDE------GAATELSF--QM-------------W--  288 (401)
Q Consensus       246 --~~~~~p~~~~~~~~~~~-----------~i-~e~l~~~g~~~~~------~~~~~~~~--~~-------------~--  288 (401)
                        ....+|. .+....+..           .. ..-+.+.|.....      .....+..  +.             |  
T Consensus       361 ~~g~~l~p~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  439 (932)
T PRK13184        361 GFGILLPPS-EEAERGDFYCGYGLWLHIKNNELSVSLVKNGLEIQKKSQEIISQQETFAIAIEKSNHRISLFVDQTLWII  439 (932)
T ss_pred             ccceecCcc-cccccCccccccceeeecccccceeeeecccceeecCCcccccccceeeEEEEEecchhhhhcccceEEE
Confidence              0001111 000000000           00 0000011111000      00000000  00             0  


Q ss_pred             -----------------------------cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhH
Q 015733          289 -----------------------------TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARR  336 (401)
Q Consensus       289 -----------------------------t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~  336 (401)
                                                   .....-......-.++.+..+.|++|+..|++.-+.-|. .   .++.+..
T Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  518 (932)
T PRK13184        440 HIDYLPSRGGRIGIIIQDLQDIMSNIAIFESSGALRVSCLAVPDAFLAEKLYDQALIFYRRIRESFPG-RKEGYEAQFRL  518 (932)
T ss_pred             eeeccccCCceEEEEEecchhhccceEEEEecCceeeecccCcHHHHhhHHHHHHHHHHHHHhhcCCC-cccchHHHHHh
Confidence                                         000000111222345667888999999999999998886 4   4578888


Q ss_pred             HHHHHhC----C---ChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          337 SLSYLMS----D---MPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       337 a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+.+..    |   .+++|+..+++ +.-.|.-|=-|..+|.+|..+|+|+|-+++|.-|++.-|.+.
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        519 GITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            8887653    2   46667766665 344678888899999999999999999999999999887654

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=3.6e-35  Score=278.16  Aligned_cols=200  Identities=15%  Similarity=0.141  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++..++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++ |+
T Consensus        74 ~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  152 (340)
T PTZ00426         74 QVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSL-NI  152 (340)
T ss_pred             hHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3467889999999999999999884444     34999998765554444566799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.++.+||+|||+++..... ....||+.|+|||++.+..++.++|||||||++|||+||..||....
T Consensus       153 vHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~  232 (340)
T PTZ00426        153 VYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANE  232 (340)
T ss_pred             EccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999875443 34578999999999998889999999999999999999999987643


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      .......    +....  ..+|...+..+.++|.+||+.||.+|+     |+++++.+
T Consensus       233 ~~~~~~~----i~~~~--~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        233 PLLIYQK----ILEGI--IYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             HHHHHHH----HhcCC--CCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            2221111    11111  134566778899999999999999995     78888764

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1e-34  Score=264.51  Aligned_cols=205  Identities=16%  Similarity=0.201  Sum_probs=164.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..++|..|+.++..++|||++.++....    .+||||++++.+..+......+++..+..++.|++.||.|||++ |++
T Consensus        39 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~-~i~  117 (257)
T cd05116          39 LKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEET-NFV  117 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CEe
Confidence            3568999999999999999998884333    34999999664444444456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ||||||.||+++.++.+||+|||++........       ..++..|+|||.+....++.++|||||||++|||++ |..
T Consensus       118 H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~  197 (257)
T cd05116         118 HRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQK  197 (257)
T ss_pred             ecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999886543321       123478999999988889999999999999999998 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||........     ...+......+.|..++.++.++|.+||+.||.+||++.+|...|+..
T Consensus       198 p~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         198 PYKGMKGNEV-----TQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CCCCCCHHHH-----HHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            8765322111     111222223345667888999999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=8.3e-35  Score=266.52  Aligned_cols=204  Identities=13%  Similarity=0.186  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++.+++|||++++...+.     .+||||++++.+. .+......+++..++.++.|++.||+|||+. |+
T Consensus        50 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~-~i  128 (266)
T cd05064          50 RRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEM-GY  128 (266)
T ss_pred             HHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            467999999999999999999885433     3499999976544 4444456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||+++.++.++++|||.+.......     ...++..|+|||.+.+..++.++|||||||++||+++ |..|
T Consensus       129 iH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p  208 (266)
T cd05064         129 VHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERP  208 (266)
T ss_pred             eeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999876543221     1234578999999998999999999999999999775 8888


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |.........    .. +......+.+..++..+.+++.+||+.+|.+|||+.+|.+.|.++
T Consensus       209 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         209 YWDMSGQDVI----KA-VEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             cCcCCHHHHH----HH-HHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            7543221111    11 111122234566788999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=266.27  Aligned_cols=209  Identities=19%  Similarity=0.234  Sum_probs=163.8

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccC---CCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSG---ETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      .=-+|+.+|..++|||||++.+.+.          .+|||||+.++.+.+..   .+..++.-.+.-+..||++||.|||
T Consensus        63 ~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh  142 (364)
T KOG0658|consen   63 YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH  142 (364)
T ss_pred             cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH
Confidence            3346999999999999999884443          23999999887776653   4677888889999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCC-CCeEEecccCccccCCC---CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHh
Q 015733           86 SKERALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~t  160 (401)
                      +. ||+||||||.|+|+|.+ |.+||||||.|+....+   .++..|..|+|||.+.+. .|+.+.||||.|||+.||+-
T Consensus       143 ~~-~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~  221 (364)
T KOG0658|consen  143 SH-GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLK  221 (364)
T ss_pred             hc-CcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhc
Confidence            98 99999999999999976 89999999999986554   456678999999999884 69999999999999999999


Q ss_pred             CCCCCCchhhHH----------------hhhccc-------cccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          161 GKHIPPSHALDL----------------IRDRNI-------QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       161 g~~p~~~~~~~~----------------~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      |++.|++.....                ....+.       .++....+..-+....+++..+|+.++|..+|.+|.++.
T Consensus       222 g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~  301 (364)
T KOG0658|consen  222 GQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSAL  301 (364)
T ss_pred             CCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHH
Confidence            999887742211                110110       111111111113456788999999999999999999999


Q ss_pred             HHHH--HHHcccc
Q 015733          218 SLVT--ALVTLQK  228 (401)
Q Consensus       218 ~vl~--~l~~~~~  228 (401)
                      +++.  .+..+..
T Consensus       302 ~~l~h~fFdelr~  314 (364)
T KOG0658|consen  302 EALAHPFFDELRD  314 (364)
T ss_pred             HHhcchhhHHhhC
Confidence            9986  3444443

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=277.16  Aligned_cols=192  Identities=17%  Similarity=0.238  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecccc-----EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQIP-----SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~~~-----v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      -+..+.|-.++.-. +||.++.++.++|..     ||||+.||....+. ....+++..+.-++..|+.||.|||++ ||
T Consensus       412 Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~-~~~~F~e~rarfyaAev~l~L~fLH~~-~I  489 (694)
T KOG0694|consen  412 VESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHI-HTDVFSEPRARFYAAEVVLGLQFLHEN-GI  489 (694)
T ss_pred             HHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEEE-ecccccHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            45566677776655 599999999888844     99999988844333 457899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |+||||-+|||||.+|.+||+|||+++...    .+.++||||.|||||++.+..|+...|.|||||+||||+.|+.||+
T Consensus       490 IYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~  569 (694)
T KOG0694|consen  490 IYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFP  569 (694)
T ss_pred             eeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999743    3457899999999999999999999999999999999999999999


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ++..+.....++..      ...+|..++.+..+|++++|.++|.+|...
T Consensus       570 gddEee~FdsI~~d------~~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  570 GDDEEEVFDSIVND------EVRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             CCCHHHHHHHHhcC------CCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence            87655443333322      234678899999999999999999999754

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.5e-34  Score=265.21  Aligned_cols=206  Identities=14%  Similarity=0.206  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+|..|+..+.+++||||++++....    ..++||+++ ++...+......+++..+..++.||+.||.|||++ |++|
T Consensus        54 ~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH  132 (279)
T cd05111          54 QEITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEH-RMVH  132 (279)
T ss_pred             HHHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CEec
Confidence            56778888999999999999884433    348999984 56666655567899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                      |||||+||+++.++.+||+|||+++......      ...++..|++||.+.++.++.++|||||||++||++| |..||
T Consensus       133 ~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~  212 (279)
T cd05111         133 RNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPY  212 (279)
T ss_pred             cccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999997653321      2235678999999998889999999999999999998 88887


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .+......     ..++........+..++.++.+++.+||..+|++|||+.++++.|..+...
T Consensus       213 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         213 AGMRPHEV-----PDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             CCCCHHHH-----HHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence            65322211     111111112223344567889999999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9.1e-35  Score=269.13  Aligned_cols=205  Identities=14%  Similarity=0.200  Sum_probs=161.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++.+++||||+.+...+.     .+||||++++++..+......+++..+..++.|++.||.|||+. |+
T Consensus        43 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i  121 (287)
T cd07848          43 VKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKN-DI  121 (287)
T ss_pred             chhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3567889999999999999999884433     35999999887777665566799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+||+++.++.+||+|||++......     ....+++.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus       122 ~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf  201 (287)
T cd07848         122 VHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLF  201 (287)
T ss_pred             ecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCC
Confidence            99999999999999999999999998875432     2345789999999999888999999999999999999999988


Q ss_pred             CchhhHHh--hhcc------------------cccccccccc------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          166 PSHALDLI--RDRN------------------IQTLTDSCLE------GQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       166 ~~~~~~~~--~~~~------------------~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      ........  ....                  ......+...      .......+..+.+||.+||+.||.+|||+.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~  281 (287)
T cd07848         202 PGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQC  281 (287)
T ss_pred             CCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHH
Confidence            65321100  0000                  0000000000      01112356789999999999999999999998


Q ss_pred             HH
Q 015733          220 VT  221 (401)
Q Consensus       220 l~  221 (401)
                      ++
T Consensus       282 l~  283 (287)
T cd07848         282 LN  283 (287)
T ss_pred             hc
Confidence            75

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=269.45  Aligned_cols=199  Identities=13%  Similarity=0.193  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      -++.-+|+.++.+++++||..+++.+-     -.+||||.||....+...+..+++..+.-++++++.|+.|||++ +.+
T Consensus        55 Iediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~-~ki  133 (467)
T KOG0201|consen   55 IEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSE-KKI  133 (467)
T ss_pred             hHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhc-cee
Confidence            356678999999999999988873332     12999999876555555556668888888999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |||||+.|||+..+|.+||+|||++......    .++.||+.|||||++....|+.|+||||||++.+||.+|.+|+..
T Consensus       134 HrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~  213 (467)
T KOG0201|consen  134 HRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSK  213 (467)
T ss_pred             cccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcc
Confidence            9999999999999999999999998875543    567899999999999988999999999999999999999988654


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ..     .....-++.....+.+...+++.++++|..||++||+.|||+.+++.
T Consensus       214 ~h-----PmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  214 LH-----PMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             cC-----cceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            21     12222222222333344467888999999999999999999999986

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=282.80  Aligned_cols=205  Identities=16%  Similarity=0.150  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeee-----------eccc-cEeeecC-CcccccccCC-CCCCCHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIF-----------MFQI-PSYEFHC-LTFSNNFSGE-TQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~-----------~~~~-~v~Ey~~-~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~   80 (401)
                      ..+...+||.+++.|+ |+|||.++.           .+++ +.||||. |++.+.+..+ ...|++.++++|+.|+|+|
T Consensus        77 ~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~A  156 (738)
T KOG1989|consen   77 ALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEA  156 (738)
T ss_pred             HHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            4567788999999998 999999996           2222 3899999 5777776532 4459999999999999999


Q ss_pred             HHHHhcC-CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-c------------cccccccCCccccc---cCccC
Q 015733           81 LEYCTSK-ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-S------------YSTNLAFTPPEYLR---TGRVT  143 (401)
Q Consensus        81 l~~lH~~-~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~------------~~~~~~y~aPE~~~---~~~~~  143 (401)
                      +.+||.. ..|||||||-+||||+.+|..||||||.+....... .            ..+|+.|++||++.   +..++
T Consensus       157 Va~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~  236 (738)
T KOG1989|consen  157 VAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIG  236 (738)
T ss_pred             HHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCc
Confidence            9999998 459999999999999999999999999987633221 1            23589999999875   45799


Q ss_pred             CCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          144 PESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       144 ~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .|+|||+|||+||-|+....||....        ...+++..+.-+..+.++..+.+||..||+.||++||++-+|+..+
T Consensus       237 eKsDIWALGclLYkLCy~t~PFe~sg--------~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~  308 (738)
T KOG1989|consen  237 EKSDIWALGCLLYKLCYFTTPFEESG--------KLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEI  308 (738)
T ss_pred             chhHHHHHHHHHHHHHHhCCCcCcCc--------ceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHH
Confidence            99999999999999999999987642        1222222232223357899999999999999999999999999987


Q ss_pred             Hcccc
Q 015733          224 VTLQK  228 (401)
Q Consensus       224 ~~~~~  228 (401)
                      ..+..
T Consensus       309 ~~l~~  313 (738)
T KOG1989|consen  309 FELAN  313 (738)
T ss_pred             HHHhc
Confidence            76654

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.4e-34  Score=277.70  Aligned_cols=206  Identities=17%  Similarity=0.312  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccC----------------------------
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG----------------------------   60 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~----------------------------   60 (401)
                      ..+.+.+|+.++..+ +||||++++..+.     .+||||++++ +...+..                            
T Consensus        84 ~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (374)
T cd05106          84 EREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLE  163 (374)
T ss_pred             HHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchh
Confidence            346789999999999 8999999885433     3499999864 3332211                            


Q ss_pred             -----------------------------------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCC
Q 015733           61 -----------------------------------------ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYR   99 (401)
Q Consensus        61 -----------------------------------------~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~N   99 (401)
                                                               ...++++..+++++.||+.||.|||++ |++||||||+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-giiHrDLkp~N  242 (374)
T cd05106         164 KKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK-NCIHRDVAARN  242 (374)
T ss_pred             cccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CEEeccCchhe
Confidence                                                     123588999999999999999999999 99999999999


Q ss_pred             EEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHH
Q 015733          100 IVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDL  172 (401)
Q Consensus       100 ill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~  172 (401)
                      ||+++++.+||+|||+++......      ...+++.|+|||++.+..++.++|||||||++|||++ |..||...... 
T Consensus       243 il~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~-  321 (374)
T cd05106         243 VLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN-  321 (374)
T ss_pred             EEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc-
Confidence            999999999999999987643322      1223567999999988889999999999999999997 88887653211 


Q ss_pred             hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                         ...............+...+.++.+++.+||+.||.+|||+.+|++.|+.+
T Consensus       322 ---~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         322 ---SKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             ---HHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence               111111222222334445678899999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=277.20  Aligned_cols=208  Identities=18%  Similarity=0.259  Sum_probs=175.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-eecc----ccEeeecC-CcccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FMFQ----IPSYEFHC-LTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~~~----~~v~Ey~~-~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      --++|+.|..+++.+.|||+|+++ .|..    +.|+|||+ |.|++.+.+. +..++--..+.++.||.+||+||..+ 
T Consensus       306 eveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk-  384 (1157)
T KOG4278|consen  306 EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK-  384 (1157)
T ss_pred             hHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh-
Confidence            358999999999999999988877 3333    34999998 6677777654 45577778899999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCc--ccc---ccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS--YST---NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~---~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ++|||||..+|+|+..+..+|++|||+++.....+.  ..|   .+.|.|||.+....++.|+|||+|||+||||.| |.
T Consensus       385 nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGM  464 (1157)
T KOG4278|consen  385 NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGM  464 (1157)
T ss_pred             hhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999765543  233   468999999999999999999999999999998 55


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .|+++-     ....+..++...++.+-|..|++.+.+||+.||+++|.+||++.+|.+.++.+...
T Consensus       465 sPYPGi-----dlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  465 SPYPGI-----DLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             CCCCCc-----cHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence            666553     22334556667778888999999999999999999999999999999999877554

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=5e-35  Score=275.86  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~~i   90 (401)
                      ...+..|+.++..++||||+.+...+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+ . ||
T Consensus        39 ~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~-~i  117 (325)
T cd05594          39 VAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK-NV  117 (325)
T ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcC-CE
Confidence            457788999999999999988874433     3499999977555555456689999999999999999999997 6 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|+||..||.
T Consensus       118 vHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~  197 (325)
T cd05594         118 VYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  197 (325)
T ss_pred             EecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCC
Confidence            99999999999999999999999998753221    23468999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      .............    .  ...+|...+.++.+++.+||+.||.+|+     ++.+++++
T Consensus       198 ~~~~~~~~~~i~~----~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         198 NQDHEKLFELILM----E--EIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             CCCHHHHHHHHhc----C--CCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            5432211111111    1  1234566788899999999999999996     88988864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=2e-34  Score=276.75  Aligned_cols=204  Identities=17%  Similarity=0.301  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccC-----------------------------
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-----------------------------   60 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-----------------------------   60 (401)
                      .+.|.+|+.++..+ +||||++++..+.     .+||||++|+ +...+..                             
T Consensus        82 ~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (375)
T cd05104          82 REALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMS  161 (375)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhccc
Confidence            45789999999999 8999999985443     3499999965 4333321                             


Q ss_pred             ---------------------------------------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccC
Q 015733           61 ---------------------------------------------ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDL   95 (401)
Q Consensus        61 ---------------------------------------------~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dl   95 (401)
                                                                   ....+++..+.+++.||+.||.|||+. |++||||
T Consensus       162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dl  240 (375)
T cd05104         162 CDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK-NCIHRDL  240 (375)
T ss_pred             chhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCC
Confidence                                                         123588999999999999999999999 9999999


Q ss_pred             CCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCch
Q 015733           96 NAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSH  168 (401)
Q Consensus        96 k~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~  168 (401)
                      ||+|||++.++.+||+|||+++.......      ..++..|+|||.+.+..++.++|||||||++|||++ |..||...
T Consensus       241 kp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~  320 (375)
T cd05104         241 AARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGM  320 (375)
T ss_pred             chhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999886543321      223567999999998899999999999999999998 67776542


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ....    .....+........+...+.++.+|+.+||+.||++|||+.+|++.|+.
T Consensus       321 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         321 PVDS----KFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             CchH----HHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence            2111    1111111122222344557789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-35  Score=260.75  Aligned_cols=212  Identities=17%  Similarity=0.281  Sum_probs=162.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeeccc----------cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQI----------PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~~----------~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..-++-++|+.+++.++|+||+.+...+..          .|+|+|+..+... .+.+..|+...+..++.|+++||.|+
T Consensus        63 ~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMetDL~~i-ik~~~~L~d~H~q~f~YQiLrgLKyi  141 (359)
T KOG0660|consen   63 IDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELMETDLHQI-IKSQQDLTDDHAQYFLYQILRGLKYI  141 (359)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHhhHHHHH-HHcCccccHHHHHHHHHHHHHhcchh
Confidence            344678899999999999999998844432          2889995555444 44566799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-CccCCCCcchhhHHHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~e  157 (401)
                      |+. +|+||||||+|+|++.+..+||+|||+|+.....      +.+..|.+|.|||.+.. ..||...||||+|||+.|
T Consensus       142 HSA-nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AE  220 (359)
T KOG0660|consen  142 HSA-NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAE  220 (359)
T ss_pred             hcc-cccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHH
Confidence            999 9999999999999999999999999999987531      34456899999998876 579999999999999999


Q ss_pred             HHhCCCCCCchhh-------------------HHhhhccccccccc---cccC---CCChHHHHHHHHHHHHhcccCCCC
Q 015733          158 LLSGKHIPPSHAL-------------------DLIRDRNIQTLTDS---CLEG---QFSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       158 l~tg~~p~~~~~~-------------------~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      |++|++.|++...                   ...........+..   ..+.   ..-+...+...+|+.+||..||.+
T Consensus       221 mL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~k  300 (359)
T KOG0660|consen  221 MLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKK  300 (359)
T ss_pred             HHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccc
Confidence            9999998876321                   00000001111000   0000   111256788999999999999999


Q ss_pred             CCCHHHHHHH--HHcccc
Q 015733          213 RPNPRSLVTA--LVTLQK  228 (401)
Q Consensus       213 Rps~~~vl~~--l~~~~~  228 (401)
                      |+|++|++.+  |.....
T Consensus       301 Rita~eAL~hPYl~~~hd  318 (359)
T KOG0660|consen  301 RITAEEALAHPYLAPYHD  318 (359)
T ss_pred             cCCHHHHhcChhhhhhcC
Confidence            9999999874  444443

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-35  Score=247.05  Aligned_cols=205  Identities=15%  Similarity=0.127  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec-----cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF-----QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~-----~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      -++.-+|+.+-..++||||+++....     ..+|+|+|.|+.+..-+-.+...++..+-.+++||+.+|.|+|.+ |||
T Consensus        54 ~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n-~Iv  132 (355)
T KOG0033|consen   54 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSN-GIV  132 (355)
T ss_pred             HHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence            45677899999999999999998322     255999999763332221224568888899999999999999999 999


Q ss_pred             eccCCCCCEEECC---CCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||+||+|+|+-+   .--+||+|||++.....+.   .+.|||+||+||++...+|+..+|||+.||+||-|+.|.+||
T Consensus       133 HRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF  212 (355)
T KOG0033|consen  133 HRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF  212 (355)
T ss_pred             eccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCC
Confidence            9999999999953   3357999999999887553   356899999999999999999999999999999999999999


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ++.........+...-++  ..++.-+.++++.++||++||..||.+|.|+.|.+.+-+
T Consensus       213 ~~~~~~rlye~I~~g~yd--~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpW  269 (355)
T KOG0033|consen  213 WDEDQHRLYEQIKAGAYD--YPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPW  269 (355)
T ss_pred             CCccHHHHHHHHhccccC--CCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCch
Confidence            886554444444433222  122234567889999999999999999999999887443

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-35  Score=274.10  Aligned_cols=204  Identities=20%  Similarity=0.307  Sum_probs=176.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeee-ecccc---EeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIF-MFQIP---SYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~-~~~~~---v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|+.|..+++.++||+||++++ +.+.+   |||+++ |.+...+..++..|+......++.||+.||.|||++ ++|
T Consensus       435 tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSk-rfV  513 (974)
T KOG4257|consen  435 TEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESK-RFV  513 (974)
T ss_pred             HHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh-chh
Confidence            689999999999999999999884 44444   999999 667777777888899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCcccc-----ccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-----NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~-----~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                      ||||..+|||+.+...+||+|||+++.......+..     ...|||||.++-..+|.+||||-|||.+||++. |..||
T Consensus       514 HRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPf  593 (974)
T KOG4257|consen  514 HRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPF  593 (974)
T ss_pred             hhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999876644322     468999999999999999999999999999986 77787


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      .+     ..+.+.-..+..+-+.+.|+.||+.+..|+.+||+.+|.+||.+.++...|..+
T Consensus       594 qg-----vkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv  649 (974)
T KOG4257|consen  594 QG-----VKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDV  649 (974)
T ss_pred             cc-----ccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHH
Confidence            65     233344444555666778999999999999999999999999999998877554

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=3.3e-34  Score=267.74  Aligned_cols=206  Identities=16%  Similarity=0.210  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC------------------CCCCCCHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG------------------ETQPMKWAMRLR   72 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~------------------~~~~l~~~~~~~   72 (401)
                      ..+|.+|+.++.+++||||+.++..+.     .+||||+.++ +...+..                  ....+++..+.+
T Consensus        63 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (304)
T cd05096          63 RNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLH  142 (304)
T ss_pred             HHHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHH
Confidence            467999999999999999999884433     4499999864 4333321                  113578899999


Q ss_pred             HHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCC
Q 015733           73 VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPES  146 (401)
Q Consensus        73 i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~  146 (401)
                      ++.||+.||.|||+. |++||||||+|||++.++.+||+|||+++......      ...++..|+|||++.++.++.++
T Consensus       143 i~~~i~~al~~lH~~-~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  221 (304)
T cd05096         143 VALQIASGMKYLSSL-NFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTAS  221 (304)
T ss_pred             HHHHHHHHHHHHHHC-CccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchh
Confidence            999999999999999 99999999999999999999999999988654322      22346789999999888899999


Q ss_pred             cchhhHHHHHHHHhC--CCCCCchhhHHhhhcccccccc---ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          147 VMYSFGTLLLDLLSG--KHIPPSHALDLIRDRNIQTLTD---SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       147 Dv~slG~~l~el~tg--~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ||||||+++|||+++  ..|+........... ......   .......++.++..+.+||.+||+.+|.+|||+.+|.+
T Consensus       222 Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~  300 (304)
T cd05096         222 DVWAFGVTLWEILMLCKEQPYGELTDEQVIEN-AGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHA  300 (304)
T ss_pred             hhHHHHHHHHHHHHccCCCCCCcCCHHHHHHH-HHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHH
Confidence            999999999999875  445543221111100 000000   01112234567788999999999999999999999988


Q ss_pred             HHH
Q 015733          222 ALV  224 (401)
Q Consensus       222 ~l~  224 (401)
                      .|+
T Consensus       301 ~l~  303 (304)
T cd05096         301 FLT  303 (304)
T ss_pred             HHh
Confidence            875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.6e-34  Score=269.75  Aligned_cols=205  Identities=14%  Similarity=0.175  Sum_probs=157.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.+++.++||||+.+...+.     .+||||+++++...+......+++..+..++.|++.||.|||+. ||+
T Consensus        47 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~iv  125 (303)
T cd07869          47 PFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQR-YIL  125 (303)
T ss_pred             chhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            356889999999999999999885443     34999999888777766667799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||++......    ....+++.|+|||++.+ ..++.++|||||||++|+|+||..||.
T Consensus       126 H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  205 (303)
T cd07869         126 HRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFP  205 (303)
T ss_pred             cCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998754322    23457899999999875 457889999999999999999999986


Q ss_pred             chhhH--Hhhh-----cc-----c---cc---cccccccCCCCh---------HHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          167 SHALD--LIRD-----RN-----I---QT---LTDSCLEGQFSS---------DEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       167 ~~~~~--~~~~-----~~-----~---~~---~~~~~~~~~~~~---------~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      +....  ....     ..     .   ..   ..........+.         ..+..+.+|+.+||+.||.+|||+.++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~  285 (303)
T cd07869         206 GMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAA  285 (303)
T ss_pred             CCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHH
Confidence            53110  0000     00     0   00   000000000011         124578899999999999999999999


Q ss_pred             HHH
Q 015733          220 VTA  222 (401)
Q Consensus       220 l~~  222 (401)
                      +.+
T Consensus       286 l~h  288 (303)
T cd07869         286 LSH  288 (303)
T ss_pred             hcC
Confidence            863

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=4.1e-34  Score=260.57  Aligned_cols=204  Identities=15%  Similarity=0.225  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.+....+    ..||||++++ +...+......+++..+++++.|++.||.|||++ |++
T Consensus        39 ~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~  117 (257)
T cd05115          39 RDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGK-NFV  117 (257)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhc-Cee
Confidence            467999999999999999999885443    3499999865 4444444566899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ||||||+||+++.++.+||+|||++........       ..+++.|+|||.+....++.++|||||||++||+++ |..
T Consensus       118 H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~  197 (257)
T cd05115         118 HRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQK  197 (257)
T ss_pred             ecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999876433211       122468999999988889999999999999999996 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||.......     ....+........+..++.++.+++.+||..+|++||++.+|.+.|+.+
T Consensus       198 p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         198 PYKKMKGPE-----VMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CcCcCCHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            875432211     1111122223345667788999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=3.1e-35  Score=268.35  Aligned_cols=201  Identities=23%  Similarity=0.372  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+..+++++||||+++++...     ..||||+++ ++...+... ...+++..+..|+.||+.||.|||++ +
T Consensus        45 ~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-~  123 (259)
T PF07714_consen   45 EEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN-N  123 (259)
T ss_dssp             HHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            689999999999999999999884333     349999995 565555544 67899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ++|++|+++||++++++.+||+|||++.......      .......|+|||.+....++.++||||||+++||++| |.
T Consensus       124 iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~  203 (259)
T PF07714_consen  124 IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGK  203 (259)
T ss_dssp             EEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999988763221      2235678999999998889999999999999999999 56


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .|+.......    ....+ ........+..++..+.++|..||+.+|.+|||+.+|++.|
T Consensus       204 ~p~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  204 FPFSDYDNEE----IIEKL-KQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             GTTTTSCHHH----HHHHH-HTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             cccccccccc----ccccc-cccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            7764432111    11111 22223345667888999999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.2e-34  Score=283.55  Aligned_cols=199  Identities=19%  Similarity=0.212  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-cccc---CCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFS---GETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...+.+|+.++..++||||++++..+.     .+||||++|+.+ ..+.   ....++++..+..++.||+.||.|||++
T Consensus       109 ~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~  188 (478)
T PTZ00267        109 AAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR  188 (478)
T ss_pred             HHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            356778999999999999999985444     449999996543 3332   2356799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                       ||+||||||+|||++.++.+||+|||+++.....      ...+||+.|+|||++.+..++.++|||||||++|||+||
T Consensus       189 -~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  267 (478)
T PTZ00267        189 -KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTL  267 (478)
T ss_pred             -CEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhC
Confidence             9999999999999999999999999999875432      234689999999999988899999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      +.||..........    .+... ....++..++.++.++|.+||+.+|++|||+.+++.
T Consensus       268 ~~Pf~~~~~~~~~~----~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        268 HRPFKGPSQREIMQ----QVLYG-KYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCCCCCCCHHHHHH----HHHhC-CCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            99986543221111    11111 111244567788999999999999999999999975

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.2e-34  Score=271.19  Aligned_cols=199  Identities=17%  Similarity=0.200  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+..|+.++.+++||||+.++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||+
T Consensus        44 ~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iv  122 (323)
T cd05584          44 TAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQ-GII  122 (323)
T ss_pred             HHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            356788999999999999998874433     34999999765554544567789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....|++.|+|||++.+..++.++|||||||++|||++|..||..
T Consensus       123 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~  202 (323)
T cd05584         123 YRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTA  202 (323)
T ss_pred             cCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999998753222    234689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ......    ...+...  ...+|...+..+.++|.+||+.+|.+||     ++.+++.+
T Consensus       203 ~~~~~~----~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         203 ENRKKT----IDKILKG--KLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             CCHHHH----HHHHHcC--CCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            432211    1111111  1234666788899999999999999999     78887764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.8e-34  Score=265.02  Aligned_cols=202  Identities=18%  Similarity=0.229  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccccccc----CCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFS----GETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~----~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      +.|..|+.++..++|||++.+...+.     .+||||++|+.+..+.    .....+++..++.++.||+.||.|||++ 
T Consensus        38 ~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-  116 (280)
T cd05608          38 EGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR-  116 (280)
T ss_pred             HHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            56788999999999999998874333     3599999976443222    2346799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||+||||||+||+++.++.++|+|||++......    ....||+.|+|||.+.+..++.++|||||||++|||++|+.|
T Consensus       117 ~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~p  196 (280)
T cd05608         117 RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGP  196 (280)
T ss_pred             CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998765433    234678999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      |...............+...  ...++...+..+.+++.+||+.||.+||     ++++++.+
T Consensus       197 f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         197 FRARGEKVENKELKQRILND--SVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             CCCCCcchhHHHHHHhhccc--CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            86532111111111111111  1234566788999999999999999999     66777753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=244.54  Aligned_cols=218  Identities=17%  Similarity=0.159  Sum_probs=170.5

Q ss_pred             CchhhhhhccchhhhhhHHHHHHHHHHhhhCCCeEEEeee---ecc-------ccEeeecC-CcccccccC---CCCCCC
Q 015733            1 MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIF---MFQ-------IPSYEFHC-LTFSNNFSG---ETQPMK   66 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~---~~~-------~~v~Ey~~-~~l~~~~~~---~~~~l~   66 (401)
                      ||+++.+++     .+.+.-++|+..-++++|||++++..   ..+       .+++.|.. |++.+.+..   ++..++
T Consensus        51 lKkI~c~~~-----~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~s  125 (302)
T KOG2345|consen   51 LKKILCHSQ-----EDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVS  125 (302)
T ss_pred             hheeeccch-----HHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccC
Confidence            688888886     57788999999999999999998772   111       33777766 667666543   455799


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC-CCceeccCCCCCEEECCCCCeEEecccCccccCCC---C----------ccccccccC
Q 015733           67 WAMRLRVALHIAEALEYCTSK-ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---R----------SYSTNLAFT  132 (401)
Q Consensus        67 ~~~~~~i~~qi~~~l~~lH~~-~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~----------~~~~~~~y~  132 (401)
                      +.+++.|+.+|++||++||+. +.+.||||||.|||+++++.+++.|||.++...-.   .          ....|..|+
T Consensus       126 E~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyR  205 (302)
T KOG2345|consen  126 EAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYR  205 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCccc
Confidence            999999999999999999999 23999999999999999999999999998764321   1          123588999


Q ss_pred             Ccccccc---CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccc-cccccccCCCChHHHHHHHHHHHHhccc
Q 015733          133 PPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQY  208 (401)
Q Consensus       133 aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~cl~~  208 (401)
                      |||.+.-   ...+.++|||||||+||+|+.|..||.....   ..+.+.- +....+..+-....+..+.++|..||+.
T Consensus       206 APELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~---~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~mlqv  282 (302)
T KOG2345|consen  206 APELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ---QGGSLALAVQNAQISIPNSSRYSEALHQLIKSMLQV  282 (302)
T ss_pred             CchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh---cCCeEEEeeeccccccCCCCCccHHHHHHHHHHhcC
Confidence            9999874   4578999999999999999999999854321   2222222 2222332222334889999999999999


Q ss_pred             CCCCCCCHHHHHHHHHcc
Q 015733          209 EPRERPNPRSLVTALVTL  226 (401)
Q Consensus       209 ~p~~Rps~~~vl~~l~~~  226 (401)
                      ||.+||++.+++..+..+
T Consensus       283 dP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  283 DPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             CcccCCCHHHHHHHHHhh
Confidence            999999999999988764

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.8e-34  Score=263.24  Aligned_cols=210  Identities=20%  Similarity=0.260  Sum_probs=163.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....|.+|+.++++++|||++++...+.       .+||||++++.+..+... ..+++..+..++.|++.||.|||++ 
T Consensus        49 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~l~~~~~~~i~~~l~~~l~~lH~~-  126 (283)
T cd05080          49 NTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK-HKLNLAQLLLFAQQICEGMAYLHSQ-  126 (283)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            4578999999999999999999884321       359999996544433322 4599999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++||||||+||+++.++.++|+|||+++......       ...++..|++||.+.+..++.++||||||+++|||+||
T Consensus       127 ~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg  206 (283)
T cd05080         127 HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTH  206 (283)
T ss_pred             CeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhC
Confidence            99999999999999999999999999988654322       12345679999999888899999999999999999999


Q ss_pred             CCCCCchhhH---Hhhh-------ccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          162 KHIPPSHALD---LIRD-------RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       162 ~~p~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ..|+......   ....       ...............+..++..+.+++.+||+.+|++|||+.+|+..|+.+.
T Consensus       207 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         207 CDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             CCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            9886432110   0000       0011111122223345667889999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.3e-34  Score=260.57  Aligned_cols=201  Identities=21%  Similarity=0.286  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|..|+.++..++|||++.++..+.     .+||||++++ +...+......+++..+..++.||+.||+|||++ |+
T Consensus        43 ~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  121 (258)
T cd05078          43 SESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDK-GL  121 (258)
T ss_pred             HHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            467899999999999999998884433     3499999965 5455544555789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCC--------eEEecccCccccCCCCccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVN--------PRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~--------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+||+++.++.        ++++|||++..........+++.|+|||++.+. .++.++|||||||++|||++|
T Consensus       122 iH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g  201 (258)
T cd05078         122 THGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSG  201 (258)
T ss_pred             ecCCCccceEEEecccccccCCCceEEecccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcC
Confidence            99999999999987765        699999998877666667788999999999874 579999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ..+|.........    .....  ....+|...+.++.+++.+||+.+|++|||++++++.|+
T Consensus       202 ~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         202 GDKPLSALDSQKK----LQFYE--DRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             CCCChhhccHHHH----HHHHH--ccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            6444322111100    00101  122345556678999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.5e-34  Score=265.15  Aligned_cols=207  Identities=17%  Similarity=0.227  Sum_probs=162.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------CCCCCCHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------ETQPMKWAMRLRVAL   75 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------~~~~l~~~~~~~i~~   75 (401)
                      .+.|.+|+.++.+++|||++.+...+.     .+||||++++ +...+..               ....+++..++.++.
T Consensus        51 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  130 (291)
T cd05094          51 RKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIAS  130 (291)
T ss_pred             HHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHH
Confidence            367999999999999999999884433     3499999864 4443322               123489999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      ||+.||.|||++ |++||||||+||+++.++.++|+|||++......      ....++..|+|||.+.+..++.++|||
T Consensus       131 ~i~~al~~lH~~-~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  209 (291)
T cd05094         131 QIASGMVYLASQ-HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW  209 (291)
T ss_pred             HHHHHHHHHHhC-CeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHH
Confidence            999999999999 9999999999999999999999999998764432      123356789999999988899999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||||++|||+| |..||...........     .........+..++..+.+++.+||+.+|++|||+.+|++.|..+.+
T Consensus       210 slG~il~el~t~g~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         210 SFGVILWEIFTYGKQPWFQLSNTEVIEC-----ITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHH-----HhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            99999999999 8887654322111111     11111122344567789999999999999999999999999998865


Q ss_pred             C
Q 015733          229 D  229 (401)
Q Consensus       229 ~  229 (401)
                      .
T Consensus       285 ~  285 (291)
T cd05094         285 A  285 (291)
T ss_pred             h
Confidence            3

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=2.1e-34  Score=266.99  Aligned_cols=205  Identities=15%  Similarity=0.238  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++++++||||+.+...+.     ..||||++|++...+......+++..+..++.||+.||.|||++ ||+
T Consensus        47 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~iv  125 (288)
T cd07871          47 PCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKR-KIL  125 (288)
T ss_pred             chhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ccc
Confidence            457889999999999999999884433     35999999887777665566789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....+++.|+|||.+.+ ..++.++||||+||++|+|+||+.||.
T Consensus       126 H~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~  205 (288)
T cd07871         126 HRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFP  205 (288)
T ss_pred             cCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998764332    23456889999999876 568999999999999999999999986


Q ss_pred             chhhHHhhhcc--------------------ccccccccccC----CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRN--------------------IQTLTDSCLEG----QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~--------------------~~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...........                    ......+....    ......+.++.+|+.+||+.||.+|||+.+++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         206 GSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             CCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            54221110000                    00000000000    0112356788999999999999999999999753

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.2e-35  Score=276.55  Aligned_cols=202  Identities=14%  Similarity=0.178  Sum_probs=164.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC-
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK-   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~-   87 (401)
                      ..+.|..|+.+|+.|+|||||+++..+.       .+|+|+|..|.+..+..+-+.++.+.++.|++||+.||.|||++ 
T Consensus        84 ~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~  163 (632)
T KOG0584|consen   84 ELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQD  163 (632)
T ss_pred             HHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCC
Confidence            3588999999999999999999994333       33999999777777777778899999999999999999999998 


Q ss_pred             CCceeccCCCCCEEECCC-CCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           88 ERALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ++|||||||++||+|+.+ |.|||+|+|||+.....  .+..|||.|||||++. ..|+...||||||+.++||+|+..|
T Consensus       164 PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYP  242 (632)
T KOG0584|consen  164 PPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYP  242 (632)
T ss_pred             CCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCC
Confidence            679999999999999865 89999999999986544  4568999999999987 7899999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.......   .+..++..-..+..+..--.+++++||.+||.. .+.|||+.|+|..
T Consensus       243 YsEC~n~A---QIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  243 YSECTNPA---QIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             hhhhCCHH---HHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence            76543221   111222111111122223467899999999999 9999999999973

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.5e-34  Score=272.46  Aligned_cols=204  Identities=16%  Similarity=0.298  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+.+|+.++++++||||+.+....          ..+||||+++++...+. ....+++..+..++.||+.||.|||+
T Consensus        43 ~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~LH~  121 (338)
T cd07859          43 ATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIK-ANDDLTPEHHQFFLYQLLRALKYIHT  121 (338)
T ss_pred             HHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCCCCHHHHHH-hcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999887322          14599999887766554 44569999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCcccccc--CccCCCCcchhhHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~e  157 (401)
                      + ||+||||||+|||++.++.+||+|||+++.....       ....+|+.|+|||++.+  ..++.++|||||||++||
T Consensus       122 ~-~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~e  200 (338)
T cd07859         122 A-NVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAE  200 (338)
T ss_pred             C-CeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHH
Confidence            9 9999999999999999999999999998764321       23467899999999876  578999999999999999


Q ss_pred             HHhCCCCCCchhhHHh-------------------hhcccccccc---ccccCCC---ChHHHHHHHHHHHHhcccCCCC
Q 015733          158 LLSGKHIPPSHALDLI-------------------RDRNIQTLTD---SCLEGQF---SSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~-------------------~~~~~~~~~~---~~~~~~~---~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      |+||+.||........                   ..........   ......+   .+..+..+.+++.+||+.||++
T Consensus       201 l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  280 (338)
T cd07859         201 VLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKD  280 (338)
T ss_pred             HHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCccc
Confidence            9999998865321100                   0000000000   0000000   1134567899999999999999


Q ss_pred             CCCHHHHHHH
Q 015733          213 RPNPRSLVTA  222 (401)
Q Consensus       213 Rps~~~vl~~  222 (401)
                      |||+.+++.+
T Consensus       281 Rpt~~e~l~h  290 (338)
T cd07859         281 RPTAEEALAD  290 (338)
T ss_pred             CCCHHHHhcC
Confidence            9999999974

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=5e-34  Score=266.30  Aligned_cols=207  Identities=16%  Similarity=0.100  Sum_probs=168.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhCCCeEEEeeeeccc-----cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           11 PMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQI-----PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        11 ~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~~-----~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      |..+.|-+....|-.+|....+|.+|++++.||.     +||||++||....+..+...|++..+..++.+++.||+.+|
T Consensus       179 M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH  258 (550)
T KOG0605|consen  179 MLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIH  258 (550)
T ss_pred             HHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHH
Confidence            4556778888889999999999999999988884     49999999888877778889999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCC-------------------------------C------------
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-------------------------------G------------  122 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-------------------------------~------------  122 (401)
                      +. |+|||||||+|+|||..|++||+||||+.....                               .            
T Consensus       259 ~~-gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  337 (550)
T KOG0605|consen  259 QL-GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTW  337 (550)
T ss_pred             Hc-CcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHH
Confidence            99 999999999999999999999999999753110                               0            


Q ss_pred             --------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHH
Q 015733          123 --------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDE  194 (401)
Q Consensus       123 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (401)
                              .+..|||-|+|||++.+..|+..+|.||||||+|||+.|.+||.+......-.....-  ...+..+-...+
T Consensus       338 ~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nw--r~~l~fP~~~~~  415 (550)
T KOG0605|consen  338 KRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNW--RETLKFPEEVDL  415 (550)
T ss_pred             HhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH--hhhccCCCcCcc
Confidence                    0134789999999999999999999999999999999999999876544322221111  011221222346


Q ss_pred             HHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 015733          195 GTELVRLASRCLQYEPRERPN---PRSLVT  221 (401)
Q Consensus       195 ~~~l~~li~~cl~~~p~~Rps---~~~vl~  221 (401)
                      +.+..+||.+|+. ||.+|..   +.||..
T Consensus       416 s~eA~DLI~rll~-d~~~RLG~~G~~EIK~  444 (550)
T KOG0605|consen  416 SDEAKDLITRLLC-DPENRLGSKGAEEIKK  444 (550)
T ss_pred             cHHHHHHHHHHhc-CHHHhcCcccHHHHhc
Confidence            7899999999999 9999964   666654

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.5e-34  Score=274.15  Aligned_cols=209  Identities=14%  Similarity=0.162  Sum_probs=159.7

Q ss_pred             hhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           12 MIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        12 ~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      +...+...+.+|+.++++++||||+++...+.     .+|+|++.+++...+. ....+++..++.++.||+.||.|||+
T Consensus       122 iK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~~~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~ylH~  200 (391)
T PHA03212        122 IKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYCYLA-AKRNIAICDILAIERSVLRAIQYLHE  200 (391)
T ss_pred             EechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34455678899999999999999999885443     3489999877666554 34578999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      + ||+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+..++.++|||||||++|||+||
T Consensus       201 ~-~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg  279 (391)
T PHA03212        201 N-RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATC  279 (391)
T ss_pred             C-CcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHC
Confidence            9 9999999999999999999999999998753221     234689999999999988899999999999999999999


Q ss_pred             CCCCCchhh--------HH---h-h-------------hccccccc---------cccccCCC--ChHHHHHHHHHHHHh
Q 015733          162 KHIPPSHAL--------DL---I-R-------------DRNIQTLT---------DSCLEGQF--SSDEGTELVRLASRC  205 (401)
Q Consensus       162 ~~p~~~~~~--------~~---~-~-------------~~~~~~~~---------~~~~~~~~--~~~~~~~l~~li~~c  205 (401)
                      ..|+.....        ..   . .             ........         .+..+...  ....+.++.+||.+|
T Consensus       280 ~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~m  359 (391)
T PHA03212        280 HDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKM  359 (391)
T ss_pred             CCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHH
Confidence            987643210        00   0 0             00000000         00000000  113567899999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTA  222 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+|||+.+++.+
T Consensus       360 L~~dP~~Rpta~elL~h  376 (391)
T PHA03212        360 LAFDAHHRPSAEALLDF  376 (391)
T ss_pred             hcCChhhCCCHHHHhcC
Confidence            99999999999999864

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=7.3e-34  Score=262.06  Aligned_cols=208  Identities=14%  Similarity=0.178  Sum_probs=164.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+|.+|+.++..++|||++.+.....    ..++||+++ ++...+......+++..++.++.|++.||.|||++ |+
T Consensus        52 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i  130 (279)
T cd05109          52 ANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEV-RL  130 (279)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4568899999999999999887773332    349999985 56656555566799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      +||||||+|||+++++.+||+|||+++.......      ..+++.|++||.+.+..++.++|||||||++|||+| |..
T Consensus       131 iH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~  210 (279)
T cd05109         131 VHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAK  210 (279)
T ss_pred             eccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999887543221      223568999999988889999999999999999998 777


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||........     ...+........+..++.++.+++.+||+.||++||++.+++..|..+...
T Consensus       211 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         211 PYDGIPAREI-----PDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             CCCCCCHHHH-----HHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            7654321111     111111122233456778899999999999999999999999999877654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=6.4e-34  Score=260.16  Aligned_cols=204  Identities=19%  Similarity=0.280  Sum_probs=163.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .++|.+|+.++.+++|||++.++..+.     ..||||++++ +...+.. ....+++..+..++.|++.||.|||++ |
T Consensus        46 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~  124 (263)
T cd05052          46 VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK-N  124 (263)
T ss_pred             HHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            357999999999999999998884332     3499999864 5544433 345689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||++++++.+||+|||++........     ..++..|+|||.+.+..++.++|||||||++|||++ |..
T Consensus       125 i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~  204 (263)
T cd05052         125 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMS  204 (263)
T ss_pred             EeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999887554321     123567999999988889999999999999999998 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |+.+.......     ...........+..++..+.+++.+||+.+|++|||+.++++.|+.+
T Consensus       205 p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         205 PYPGIDLSQVY-----ELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCCCCCHHHHH-----HHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            87653322111     11112223345667788999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-34  Score=270.91  Aligned_cols=205  Identities=14%  Similarity=0.090  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+..|+.++..++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. |++
T Consensus        45 ~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iv  123 (333)
T cd05600          45 VRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHEL-GYI  123 (333)
T ss_pred             HHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            467889999999999999999884443     34999999765555555567799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL  170 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~  170 (401)
                      ||||||+|||++.++.+||+|||++...... ....||+.|+|||++.+..++.++|||||||++|||++|..||.....
T Consensus       124 H~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  203 (333)
T cd05600         124 HRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP  203 (333)
T ss_pred             ccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH
Confidence            9999999999999999999999998865442 345789999999999988999999999999999999999999865432


Q ss_pred             HHhhhcc--ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          171 DLIRDRN--IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       171 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......  ................++.++.+++.+||..+|.+|||+.+++.+
T Consensus       204 ~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         204 NETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             HHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            2111110  001011000000112457889999999999999999999999875

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=3.1e-34  Score=269.80  Aligned_cols=194  Identities=17%  Similarity=0.191  Sum_probs=156.1

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+..|+.++... +|||++.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++ |
T Consensus        38 ~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~-~  116 (320)
T cd05590          38 DVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDK-G  116 (320)
T ss_pred             HHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            345678888888876 6999999885444     34999999765554444556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ++||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       117 ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf  196 (320)
T cd05590         117 IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPF  196 (320)
T ss_pred             eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCC
Confidence            99999999999999999999999999875322    12356899999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ..............    .  ...+|...+.++.+++.+||+.||.+||++
T Consensus       197 ~~~~~~~~~~~i~~----~--~~~~~~~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         197 EAENEDDLFEAILN----D--EVVYPTWLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CCCCHHHHHHHHhc----C--CCCCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence            66433222111111    1  113455577889999999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.4e-33  Score=257.84  Aligned_cols=200  Identities=18%  Similarity=0.254  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccccccc-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFS-GETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|..|+.++..++||||+.++....     .+||||++++.+..+. ....++++..+++++.||+.||.|||++ |
T Consensus        47 ~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  125 (262)
T cd05077          47 ISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDK-D  125 (262)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhC-C
Confidence            3457899999999999999999884332     3499999976554444 3456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCC-------eEEecccCccccCCCCccccccccCCcccccc-CccCCCCcchhhHHHHHHHHh-
Q 015733           90 ALYHDLNAYRIVFDDDVN-------PRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~-------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      ++||||||+|||++.++.       ++++|||++..........++..|+|||.+.. ..++.++|||||||++|||++ 
T Consensus       126 ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~  205 (262)
T cd05077         126 LVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYN  205 (262)
T ss_pred             eECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhC
Confidence            999999999999987664       89999999887666556678889999999874 568999999999999999984 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |..|+.........     .......  ......+.++.+||.+||+.||.+||++.+|++.|
T Consensus       206 ~~~p~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         206 GEIPLKDKTLAEKE-----RFYEGQC--MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             CCCCCCCcchhHHH-----HHHhcCc--cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            66665443211110     0000000  11223456789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-33  Score=257.50  Aligned_cols=205  Identities=18%  Similarity=0.269  Sum_probs=162.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..++|..|+.++++++|||++.++....    ..||||++++ +...+. ....+++..+..++.|++.||.|||+. ++
T Consensus        39 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lh~~-~i  116 (257)
T cd05060          39 GKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLKYLK-KRREIPVSDLKELAHQVAMGMAYLESK-HF  116 (257)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCcHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHhhc-Ce
Confidence            3468999999999999999999884433    3499999865 444443 445799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCcc-------ccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-------STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      +||||||+||+++.++.+||+|||+++........       .++..|+|||.+.+..++.++|||||||++|++++ |.
T Consensus       117 ~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~  196 (257)
T cd05060         117 VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGA  196 (257)
T ss_pred             eccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999998865433221       12457999999998889999999999999999998 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .||........     ...+........+..++..+.++|.+||..+|++|||+.++++.|+.+.
T Consensus       197 ~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         197 KPYGEMKGAEV-----IAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             CCcccCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            87644321111     1111111222345667788999999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.1e-33  Score=259.67  Aligned_cols=206  Identities=20%  Similarity=0.239  Sum_probs=160.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeee-cc----------ccEeeecCCc-cccccc-----CCCCCCCHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFM-FQ----------IPSYEFHCLT-FSNNFS-----GETQPMKWAMRLRVALHI   77 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~-~~----------~~v~Ey~~~~-l~~~~~-----~~~~~l~~~~~~~i~~qi   77 (401)
                      ...+.|.+|+.++..++|||+++++.. ++          ..+|||+.++ +...+.     .....+++..+..++.|+
T Consensus        42 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  121 (272)
T cd05075          42 SEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDI  121 (272)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHH
Confidence            345789999999999999999988732 11          3499999864 333321     234568999999999999


Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhh
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSF  151 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  151 (401)
                      +.||.|||++ ||+||||||+|||++.++.+||+|||+++......      ...+++.|++||.+.+..++.++|||||
T Consensus       122 ~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~sl  200 (272)
T cd05075         122 ASGMEYLSSK-SFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSF  200 (272)
T ss_pred             HHHHHHHHHC-CeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHH
Confidence            9999999999 99999999999999999999999999988754322      2234678999999998889999999999


Q ss_pred             HHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          152 GTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       152 G~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||++|||++ |..||.........    .. +........+..++..+.++|.+||+.+|.+|||+.++++.|+.+
T Consensus       201 G~il~el~~~g~~p~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         201 GVTMWEIATRGQTPYPGVENSEIY----DY-LRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHH----HH-HHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            999999999 67776543211111    11 111111233456677899999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=271.54  Aligned_cols=199  Identities=16%  Similarity=0.205  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .++++||..|.++.|||.|.+-+|+-     -+|||||-|+-.+++.-..+|+.+-++..|+.+.+.||.|||+. +-||
T Consensus        71 qDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~-~~IH  149 (948)
T KOG0577|consen   71 QDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH-NRIH  149 (948)
T ss_pred             HHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-hHHh
Confidence            57899999999999999998876655     24999999987777776778999999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhCCCCCCch-
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHIPPSH-  168 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p~~~~-  168 (401)
                      ||||..|||+++.|.|||+|||.+....+..++.|||.|||||++..   |.|+-++||||||++..||...++|.+.- 
T Consensus       150 RDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN  229 (948)
T KOG0577|consen  150 RDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  229 (948)
T ss_pred             hhccccceEecCCCeeeeccccchhhcCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch
Confidence            99999999999999999999999999999999999999999999864   78999999999999999999999875431 


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.....  .+..--.|.+.   ..+++..++.++..||++-|.+|||.++++.+
T Consensus       230 AMSALY--HIAQNesPtLq---s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  230 AMSALY--HIAQNESPTLQ---SNEWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             HHHHHH--HHHhcCCCCCC---CchhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            111111  01111111111   45788999999999999999999999988863

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=6.1e-34  Score=264.01  Aligned_cols=204  Identities=14%  Similarity=0.187  Sum_probs=155.8

Q ss_pred             hHHHHHHHHHHhhh---CCCeEEEeeeec----------cccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM---SSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~---~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+.+|+.++..+   +||||++++...          -.+||||+++++...+... ...+++..+..++.|++.||.
T Consensus        45 ~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~  124 (290)
T cd07862          45 PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  124 (290)
T ss_pred             hHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34677788777665   699999987432          1359999998777666542 456899999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |||++ |++||||||+|||++.++.+||+|||+++.....   ....+++.|+|||.+.+..++.++|||||||++|||+
T Consensus       125 ~lH~~-~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  203 (290)
T cd07862         125 FLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF  203 (290)
T ss_pred             HHHHC-CeeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHH
Confidence            99999 9999999999999999999999999998765433   2345789999999998888999999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccc--------------ccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQT--------------LTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~--------------~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      +|..||.+.............              +....+.       ..+.+..+..+.+++.+||+.||++|||+.+
T Consensus       204 ~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~  283 (290)
T cd07862         204 RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYS  283 (290)
T ss_pred             cCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHH
Confidence            999988653211110000000              0000000       0011235677899999999999999999999


Q ss_pred             HHH
Q 015733          219 LVT  221 (401)
Q Consensus       219 vl~  221 (401)
                      ++.
T Consensus       284 ~l~  286 (290)
T cd07862         284 ALS  286 (290)
T ss_pred             Hhc
Confidence            985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.3e-33  Score=257.00  Aligned_cols=201  Identities=17%  Similarity=0.239  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+|.+|+.++.+++|||++.++..+.     ..||||++|+ +...+......+++..+..++.|++.||.|||+. |+
T Consensus        43 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  121 (256)
T cd05114          43 EEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERN-SF  121 (256)
T ss_pred             HHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            468999999999999999999884433     3499999854 5555544455789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||++++++.+||+|||.++......     ...++..|+|||.+.+..++.++||||||+++|||++ |+.|
T Consensus       122 ~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p  201 (256)
T cd05114         122 IHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMP  201 (256)
T ss_pred             cccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999987654322     1223567999999988889999999999999999999 7877


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |...........    +.. ......|...+..+.+++.+||+.+|.+|||+.++++.|
T Consensus       202 ~~~~~~~~~~~~----i~~-~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         202 FEKKSNYEVVEM----ISR-GFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             CCCCCHHHHHHH----HHC-CCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            754322111111    111 111223444567899999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=8.7e-34  Score=262.84  Aligned_cols=207  Identities=18%  Similarity=0.230  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC------------CCCCCCHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG------------ETQPMKWAMRLRVALHIA   78 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~------------~~~~l~~~~~~~i~~qi~   78 (401)
                      ...|.+|+.++.+++|||++.++..+.     ..||||++++ +...+..            ....+++..+..++.|++
T Consensus        51 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~  130 (288)
T cd05093          51 RKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIA  130 (288)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999884433     3499999854 4444321            123589999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||+|||++ |++||||||+||++++++.+||+|||+++......      ...++..|+|||.+.+..++.++||||||
T Consensus       131 ~aL~~lH~~-~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG  209 (288)
T cd05093         131 AGMVYLASQ-HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG  209 (288)
T ss_pred             HHHHHHHhC-CeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHH
Confidence            999999999 99999999999999999999999999987653321      22346789999999988899999999999


Q ss_pred             HHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          153 TLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       153 ~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |++|+|+| |..||..............     ......+...+..+.+|+.+||+.+|.+|||+.++...|+.+...
T Consensus       210 ~il~~l~t~g~~p~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         210 VVLWEIFTYGKQPWYQLSNNEVIECITQ-----GRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHc-----CCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            99999999 7777654322211111111     111122344667899999999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.9e-34  Score=271.03  Aligned_cols=195  Identities=17%  Similarity=0.177  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+..|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. |++
T Consensus        42 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~  120 (318)
T cd05582          42 RVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL-GII  120 (318)
T ss_pred             HHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CEe
Confidence            356788999999999999999875444     34999998664444444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||++......    ....|++.|+|||.+.+..++.++|||||||++|||+||+.||..
T Consensus       121 H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  200 (318)
T cd05582         121 YRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQG  200 (318)
T ss_pred             cCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCC
Confidence            9999999999999999999999998765433    234689999999999988889999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      .........    +...  ...+|...+..+.+|+.+||+.||.+|||+.+
T Consensus       201 ~~~~~~~~~----i~~~--~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         201 KDRKETMTM----ILKA--KLGMPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCHHHHHHH----HHcC--CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            432211111    1111  12345667888999999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.2e-33  Score=256.49  Aligned_cols=202  Identities=22%  Similarity=0.291  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++++++||||+.++..+.     .+||||++++ +...+......+++..+..++.|++.||.|||+. |+
T Consensus        37 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i  115 (252)
T cd05084          37 KAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESK-HC  115 (252)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            467999999999999999999884433     3499999865 4444444455789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      +||||||+||+++.++.+||+|||++........      ...+..|+|||.+.++.++.++|||||||++||+++ |..
T Consensus       116 ~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~  195 (252)
T cd05084         116 IHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAV  195 (252)
T ss_pred             cccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999876443211      112356999999998889999999999999999998 666


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |+.......     .............+..++..+.+++.+||+.+|++|||+.++++.|.
T Consensus       196 p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         196 PYANLSNQQ-----TREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             CccccCHHH-----HHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            654322111     11111112223445667889999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1e-33  Score=260.92  Aligned_cols=204  Identities=13%  Similarity=0.195  Sum_probs=156.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+..|+.++.+++|||++.+...+.     .+||||++|+.+ ..+.. ....+++..+..++.|++.||.|||+. |
T Consensus        37 ~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~  115 (277)
T cd05607          37 EKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM-D  115 (277)
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            345677999999999999999884443     349999986543 33332 345689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ++||||||+||+++.++.++|+|||++.......   ...++..|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       116 ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~  195 (277)
T cd05607         116 IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFK  195 (277)
T ss_pred             EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999987755432   3457899999999998889999999999999999999999976


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..................... ......+.++.+|+.+||+.||.+||++.++++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         196 DHKEKVAKEELKRRTLEDEVK-FEHQNFTEESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             CCcchhhHHHHHHHhhccccc-cccccCCHHHHHHHHHHhccCHhhCCCCccchhh
Confidence            432111111111111111111 0113467789999999999999999999776543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=8.7e-34  Score=268.21  Aligned_cols=206  Identities=17%  Similarity=0.232  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||+..+++
T Consensus        47 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~iv  126 (333)
T cd06650          47 RNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIM  126 (333)
T ss_pred             HHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            467999999999999999999884433     349999997654444445567999999999999999999999853799


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      ||||||+|||++.++.+||+|||++......  ....++..|+|||++.+..++.++|||||||++|+|++|+.||....
T Consensus       127 H~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~  206 (333)
T cd06650         127 HRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPD  206 (333)
T ss_pred             ecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence            9999999999999999999999998764332  34568899999999998889999999999999999999999876432


Q ss_pred             hHHhhhc-------cc-----------------------------cccccccc---cCCCC-hHHHHHHHHHHHHhcccC
Q 015733          170 LDLIRDR-------NI-----------------------------QTLTDSCL---EGQFS-SDEGTELVRLASRCLQYE  209 (401)
Q Consensus       170 ~~~~~~~-------~~-----------------------------~~~~~~~~---~~~~~-~~~~~~l~~li~~cl~~~  209 (401)
                      .......       ..                             ..+.....   ....+ ...+.++.+|+.+||+.|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~  286 (333)
T cd06650         207 AKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKN  286 (333)
T ss_pred             hhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCC
Confidence            1111000       00                             00000000   00111 124577999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |++|||+.+++.+
T Consensus       287 P~~Rpt~~ell~h  299 (333)
T cd06650         287 PAERADLKQLMVH  299 (333)
T ss_pred             cccCcCHHHHhhC
Confidence            9999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=273.06  Aligned_cols=201  Identities=17%  Similarity=0.225  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEee--eeccc---cEeeecCCcc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVI--FMFQI---PSYEFHCLTF-SNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~--~~~~~---~v~Ey~~~~l-~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      -++|+.||.+|....||+||+++  ++++.   ...|||+||- +..+..-+++|.+.++.-+++|++.||.|||++ +|
T Consensus        73 LEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~-~i  151 (1187)
T KOG0579|consen   73 LEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQ-NI  151 (1187)
T ss_pred             HhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhc-ch
Confidence            47899999999999999999998  33332   2789999874 444455578899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ||||||..|||++-+|.++|+|||++.....    ..++.|||.|||||+..     ..+|+.++||||||++|.||..+
T Consensus       152 IHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqi  231 (1187)
T KOG0579|consen  152 IHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQI  231 (1187)
T ss_pred             hhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhcc
Confidence            9999999999999999999999999776443    46889999999999875     35799999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccc-cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCL-EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .+|-..-. .   ...+-.+...-. .---|..++..+.+++.+||.+||..||++.+++++
T Consensus       232 EPPHheln-p---MRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  232 EPPHHELN-P---MRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             CCCccccc-h---HHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence            97733211 0   011111111100 011367889999999999999999999999999873

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=5.7e-34  Score=268.18  Aligned_cols=199  Identities=15%  Similarity=0.175  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|..++..+ +||||+.++..+.     .+||||++|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        39 ~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  117 (321)
T cd05591          39 VDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRH-GV  117 (321)
T ss_pred             HHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            35678898888765 7999999885544     35999999765544444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+..++.++|||||||++|+|+||+.||.
T Consensus       118 vHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~  197 (321)
T cd05591         118 IYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFE  197 (321)
T ss_pred             eccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCC
Confidence            99999999999999999999999998753221    23468999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-------CHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-------NPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-------s~~~vl~~  222 (401)
                      ............    ..  ...+|...+.++.+++.+||+.||.+||       ++.+++.+
T Consensus       198 ~~~~~~~~~~i~----~~--~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         198 ADNEDDLFESIL----HD--DVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             CCCHHHHHHHHH----cC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence            543222111111    11  1123455678899999999999999999       77777754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.5e-33  Score=268.92  Aligned_cols=202  Identities=15%  Similarity=0.165  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.+++.++|+||+.++..+.     ..||||++++.+..    ...+++..+..++.||+.||.|||+. ||
T Consensus       115 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~----~~~~~~~~~~~i~~qi~~aL~~LH~~-~i  189 (353)
T PLN00034        115 VRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEG----THIADEQFLADVARQILSGIAYLHRR-HI  189 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccc----cccCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            3567999999999999999999885444     34999999765432    23457788889999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+|||++.++.+||+|||+++.....    ....||..|+|||++..     ...+.++|||||||++|||++|
T Consensus       190 vHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g  269 (353)
T PLN00034        190 VHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLG  269 (353)
T ss_pred             eecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhC
Confidence            99999999999999999999999998875432    34568999999998753     2345689999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +.||.......+... ...+ ........+..++.++.+||.+||+.||++|||+.+++++-.
T Consensus       270 ~~pf~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~  330 (353)
T PLN00034        270 RFPFGVGRQGDWASL-MCAI-CMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPF  330 (353)
T ss_pred             CCCCCCCCCccHHHH-HHHH-hccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence            999863211100000 0000 001122345567888999999999999999999999998543

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-33  Score=257.33  Aligned_cols=207  Identities=17%  Similarity=0.219  Sum_probs=164.8

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .....+|..|+.++.+++|||++++...+.     ..||||++++ +...+......+++..+.+++.|++.||.|||+.
T Consensus        46 ~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~  125 (266)
T cd05033          46 DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEM  125 (266)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            345678999999999999999999874332     3499999864 5555555556899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                       +++||||||+||+++.++.++|+|||+++......      ...+++.|+|||.+.+..++.++||||||+++|++++ 
T Consensus       126 -~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~  204 (266)
T cd05033         126 -NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSY  204 (266)
T ss_pred             -CcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHcc
Confidence             99999999999999999999999999998764211      1123568999999998889999999999999999998 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |..|+............     ......+.+..++..+.+++.+||+.+|++||++.+|++.|..+
T Consensus       205 g~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         205 GERPYWDMSNQDVIKAV-----EDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             CCCCCCCCCHHHHHHHH-----HcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            88887543322111111     11112233456778899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.5e-33  Score=258.02  Aligned_cols=209  Identities=14%  Similarity=0.156  Sum_probs=163.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS---GETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ....|.+|+.+++.++|||++.+...+.     ..|+||++++ +...+.   .....+++..+..++.|++.||.|||+
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~  124 (267)
T cd08228          45 ARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS  124 (267)
T ss_pred             HHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            3467999999999999999999884333     3499999965 433332   234568999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      + |++|+||||+||+++.++.++|+|||++.......    ...+++.|+|||.+.+..++.++||||||+++|||++|+
T Consensus       125 ~-~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~  203 (267)
T cd08228         125 R-RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             C-CeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCC
Confidence            9 99999999999999999999999999988755432    345788999999998888899999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .||.........  ....+.........+...+..+.++|.+||+.+|++|||+.+|++.|+.++
T Consensus       204 ~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         204 SPFYGDKMNLFS--LCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             CCCccccccHHH--HHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            997553221110  001111111111223456788999999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.1e-33  Score=258.37  Aligned_cols=200  Identities=22%  Similarity=0.257  Sum_probs=155.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccccccc-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFS-GETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+|.+|+.+++.++||||+.++....     .+||||++++.+..+. .....+++..+..++.||+.||+|||++ |
T Consensus        59 ~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  137 (274)
T cd05076          59 IALAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDK-N  137 (274)
T ss_pred             HHHHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC-C
Confidence            3568999999999999999999884332     4599999976544443 4466789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCC-------CeEEecccCccccCCCCccccccccCCcccccc-CccCCCCcchhhHHHHHHHH-h
Q 015733           90 ALYHDLNAYRIVFDDDV-------NPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLL-S  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~-------~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~-t  160 (401)
                      ++||||||+|||++.++       .+|++|||++..........++..|+|||.+.+ ..++.++|||||||++||++ +
T Consensus       138 iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~  217 (274)
T cd05076         138 LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFD  217 (274)
T ss_pred             ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            99999999999997644       379999999876555445567889999999876 56899999999999999995 6


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |..||.........     .....  ....+......+.++|.+||+.+|++|||+.+|+..|
T Consensus       218 g~~p~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         218 GEVPLKERTPSEKE-----RFYEK--KHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             CCCCccccChHHHH-----HHHHh--ccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            77776543211110     11111  1122333456799999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-33  Score=257.50  Aligned_cols=201  Identities=14%  Similarity=0.146  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++.+++||||+.++..+.     ..|+||++|+.+..+......+++..+..++.|++.||.|||+. |++
T Consensus        48 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~  126 (263)
T cd06625          48 VNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN-MIV  126 (263)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            357889999999999999999985444     34999999765444444556789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||+|+||+++.++.++|+|||+++.....       ....++..|+|||.+.+..++.++||||||+++|++++|+.|
T Consensus       127 H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  206 (263)
T cd06625         127 HRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPP  206 (263)
T ss_pred             cCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999998754322       224567899999999988899999999999999999999998


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |........    ............++...+..+.++|.+||+.+|.+|||+.+++..
T Consensus       207 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         207 WAEFEAMAA----IFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ccccchHHH----HHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            754311110    111111112234566778889999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.1e-33  Score=265.62  Aligned_cols=197  Identities=19%  Similarity=0.231  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHhh-hCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIAS-MSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~-~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      +.++.|..++.. .+||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. ||+
T Consensus        40 ~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~iv  118 (316)
T cd05592          40 ECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKK-GII  118 (316)
T ss_pred             HHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CEE
Confidence            445667666654 48999999884443     34999999765544444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|||++|..||.+
T Consensus       119 H~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~  198 (316)
T cd05592         119 YRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHG  198 (316)
T ss_pred             eCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999998764322    345689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR-SLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-~vl~  221 (401)
                      ........    .+..  ....+|..++.++.+++.+||+.||.+||++. +++.
T Consensus       199 ~~~~~~~~----~i~~--~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         199 EDEDELFD----SILN--DRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             CCHHHHHH----HHHc--CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            43221111    1111  12234566788899999999999999999875 4544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.6e-33  Score=269.34  Aligned_cols=204  Identities=13%  Similarity=0.172  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+.+|+.+++.++||||+.++..+.           .+||||+++++...+.   ..+++..+..++.|++.||.||
T Consensus        63 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~~~~qi~~~L~~L  139 (359)
T cd07876          63 HAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH---MELDHERMSYLLYQMLCGIKHL  139 (359)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh---ccCCHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999884331           4599999988766653   3488999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ ||+||||||+|||++.++.+||+|||+++.....   ....+|+.|+|||++.+..++.++|||||||++|+|+||
T Consensus       140 H~~-~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg  218 (359)
T cd07876         140 HSA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG  218 (359)
T ss_pred             HhC-CcccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhC
Confidence            999 9999999999999999999999999998764332   234678999999999988999999999999999999999


Q ss_pred             CCCCCchhhHHhhhc------------------ccccccc--cccc----------------CCCChHHHHHHHHHHHHh
Q 015733          162 KHIPPSHALDLIRDR------------------NIQTLTD--SCLE----------------GQFSSDEGTELVRLASRC  205 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~------------------~~~~~~~--~~~~----------------~~~~~~~~~~l~~li~~c  205 (401)
                      ..||...........                  .......  +...                .......+..+.+||.+|
T Consensus       219 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~m  298 (359)
T cd07876         219 SVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKM  298 (359)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHH
Confidence            999864321000000                  0000000  0000                001112356789999999


Q ss_pred             cccCCCCCCCHHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~l  223 (401)
                      |+.||++|||+.+++.+-
T Consensus       299 L~~dP~~R~t~~e~l~hp  316 (359)
T cd07876         299 LVIDPDKRISVDEALRHP  316 (359)
T ss_pred             hccCcccCCCHHHHhcCc
Confidence            999999999999998753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.2e-34  Score=279.66  Aligned_cols=203  Identities=20%  Similarity=0.272  Sum_probs=155.6

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeec-------------cccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHH
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMF-------------QIPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~-------------~~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+|+.+++.++||||+.+...+             -.+||||+++++...+.   .....+++..+..++.||+.||.
T Consensus       105 ~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~  184 (440)
T PTZ00036        105 YKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALA  184 (440)
T ss_pred             hHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            345799999999999999875221             12499999987655443   34677999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCC-CeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~e  157 (401)
                      |||++ ||+||||||+|||++.++ .+||+|||+++.....   ....+|+.|+|||++.+ ..++.++|||||||++||
T Consensus       185 yLH~~-~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~e  263 (440)
T PTZ00036        185 YIHSK-FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAE  263 (440)
T ss_pred             HHHHC-CEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence            99999 999999999999999665 6999999999865433   24567899999999876 468999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhhcccc-----------------------ccccccccCCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          158 LLSGKHIPPSHALDLIRDRNIQ-----------------------TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      |+||.+||.+............                       .+....+...+|...+.++.+||.+||..||.+||
T Consensus       264 lltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~  343 (440)
T PTZ00036        264 MILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRL  343 (440)
T ss_pred             HHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCc
Confidence            9999999865422110000000                       00001111223445678899999999999999999


Q ss_pred             CHHHHHHH
Q 015733          215 NPRSLVTA  222 (401)
Q Consensus       215 s~~~vl~~  222 (401)
                      |+.+++.+
T Consensus       344 ta~e~l~h  351 (440)
T PTZ00036        344 NPIEALAD  351 (440)
T ss_pred             CHHHHhCC
Confidence            99999864

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.5e-33  Score=259.61  Aligned_cols=203  Identities=15%  Similarity=0.259  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------CCCCCHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------TQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------~~~l~~~~~~~i~~qi~~~   80 (401)
                      ...+|.+|+.++..++|||++.++..+.     ..||||++++ +...+...         ...+++..+..++.|++.|
T Consensus        52 ~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (277)
T cd05062          52 ERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG  131 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHH
Confidence            3567999999999999999999885433     3499999965 44333221         2346888999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHH
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      |.|||+. |++||||||+||++++++.++|+|||+++......      ...+++.|+|||.+.++.++.++|||||||+
T Consensus       132 l~~lH~~-~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~  210 (277)
T cd05062         132 MAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV  210 (277)
T ss_pred             HHHHHHC-CcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHH
Confidence            9999999 99999999999999999999999999987644322      1234678999999998889999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +|||++ |..||.+........    .+.. ......+..++..+.+++.+||+.+|++|||+.+++..|+
T Consensus       211 l~el~~~~~~p~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         211 LWEIATLAEQPYQGMSNEQVLR----FVME-GGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             HHHHHcCCCCCCCCCCHHHHHH----HHHc-CCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            999999 566765432211111    1111 1112345566788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2e-33  Score=255.75  Aligned_cols=205  Identities=19%  Similarity=0.311  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++++++|+|++.++.. ..     .+||||+++ ++...+... ...+++..++.++.|++.||.|||++
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  121 (256)
T cd05082          42 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN  121 (256)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            35679999999999999999998843 21     349999986 455554433 34589999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                       |++||||||+||++++++.+||+|||++....... ...++..|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       122 -~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~  200 (256)
T cd05082         122 -NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY  200 (256)
T ss_pred             -CEeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence             99999999999999999999999999988654332 3344668999999988889999999999999999998 88776


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ...........     +........+..++..+.+++.+||+.+|++|||+.++++.|+.+
T Consensus       201 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         201 PRIPLKDVVPR-----VEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             CCCCHHHHHHH-----HhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            54322211111     111122344566788999999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=8.1e-34  Score=268.02  Aligned_cols=201  Identities=14%  Similarity=0.199  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+..|+.++.++ +||||++++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ |++
T Consensus        40 ~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iv  118 (329)
T cd05588          40 DWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHER-GII  118 (329)
T ss_pred             HHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            4577899999888 6999999885544     35999999765544444557899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|+|+||+.||..
T Consensus       119 H~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         119 YRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             ecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            999999999999999999999999875221    2345689999999999988899999999999999999999999853


Q ss_pred             hhhHHhhh----c-cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC------HHHHHH
Q 015733          168 HALDLIRD----R-NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN------PRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps------~~~vl~  221 (401)
                      ........    . ....+...  ...+|..++..+.+++.+||+.||.+|||      +.+++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         199 VGMSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             ccccccccccchHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            21100000    0 01111111  12356667888999999999999999997      566664

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.6e-33  Score=260.23  Aligned_cols=203  Identities=15%  Similarity=0.225  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------CCCCCCHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------ETQPMKWAMRLRVAL   75 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------~~~~l~~~~~~~i~~   75 (401)
                      .+.|..|+.++..++||||+.+.....     ..++||++++ +...+..               ....+++..+.+++.
T Consensus        52 ~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (283)
T cd05091          52 REEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVT  131 (283)
T ss_pred             HHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHH
Confidence            467899999999999999999885433     3389999854 3333321               134589999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      |++.||.|||+. |++||||||.||++++++.+||+|||+++......      ...+++.|+|||.+.++.++.++|||
T Consensus       132 ql~~aL~~lH~~-gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~  210 (283)
T cd05091         132 QIAAGMEFLSSH-HVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIW  210 (283)
T ss_pred             HHHHHHHHHHHc-CccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHH
Confidence            999999999999 99999999999999999999999999987654322      22346789999999888899999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||||++|||++ |..|+........    ...+. .......+..++..+.+|+..||+.+|.+||++.+|+..|+.
T Consensus       211 slG~~l~el~~~g~~p~~~~~~~~~----~~~i~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         211 SYGVVLWEVFSYGLQPYCGYSNQDV----IEMIR-NRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCHHHH----HHHHH-cCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            99999999998 6666554322111    11111 111223566788899999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=9.3e-34  Score=266.38  Aligned_cols=199  Identities=15%  Similarity=0.172  Sum_probs=159.5

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+..|+.++..+ +||||+.++..+.     ..||||++|+.+.........+++..+..++.|++.||.|||++ |+
T Consensus        39 ~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~-~i  117 (318)
T cd05570          39 VECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHER-GI  117 (318)
T ss_pred             HHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            35677888888877 6999999885443     34999999765554444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.+||+|||+++....    .....|++.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       118 vH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~  197 (318)
T cd05570         118 IYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFE  197 (318)
T ss_pred             EccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCC
Confidence            9999999999999999999999999875322    123468899999999999899999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH-----HHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP-----RSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~-----~~vl~~  222 (401)
                      ..........    +...  ...+|..++..+.+||.+||+.||.+|||+     .+++..
T Consensus       198 ~~~~~~~~~~----i~~~--~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         198 GDDEDELFQS----ILED--EVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             CCCHHHHHHH----HHcC--CCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            5432211111    1111  123455677889999999999999999999     777653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2.2e-33  Score=256.33  Aligned_cols=205  Identities=20%  Similarity=0.262  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+.+++.++|||++.++.. ..     ..||||+.+ ++...+......+++..+..++.|++.||.|||+. +
T Consensus        40 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~  118 (262)
T cd05058          40 VEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASK-K  118 (262)
T ss_pred             HHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4688999999999999999988742 21     349999985 45555544455678888899999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ++||||||+|||+++++.+||+|||+++......        ...++..|+|||.+.+..++.++|||||||++|||++|
T Consensus       119 i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~  198 (262)
T cd05058         119 FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR  198 (262)
T ss_pred             ccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999987543221        22346689999999888899999999999999999996


Q ss_pred             CCCC-CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          162 KHIP-PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       162 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      +.|+ .........    ..+ ........+...+..+.+++.+||+.+|++||++.+|+..|+.+.
T Consensus       199 ~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         199 GAPPYPDVDSFDIT----VYL-LQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             CCCCCCCCCHHHHH----HHH-hcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            5543 322111110    011 111112223445678999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=9.1e-34  Score=266.16  Aligned_cols=198  Identities=18%  Similarity=0.168  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHhh-hCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIAS-MSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~-~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+..|..++.. .+|||++.++..+.     .+||||+.|+.+..+......+++..+..++.|++.||+|||++ ||
T Consensus        39 ~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  117 (316)
T cd05620          39 VECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSK-GI  117 (316)
T ss_pred             HHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3456778777765 48999998884443     35999999765444444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       118 vHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~  197 (316)
T cd05620         118 IYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             EecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875321    234568999999999998899999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR-SLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-~vl~  221 (401)
                      ............    .  ....+|..++.++.+++.+||+.||.+||++. +++.
T Consensus       198 ~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~  247 (316)
T cd05620         198 GDDEDELFESIR----V--DTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRG  247 (316)
T ss_pred             CCCHHHHHHHHH----h--CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            543222111111    0  11234555778899999999999999999984 5553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.7e-33  Score=259.53  Aligned_cols=203  Identities=17%  Similarity=0.217  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccC-------------CCCCCCHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSG-------------ETQPMKWAMRLRVALH   76 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~-------------~~~~l~~~~~~~i~~q   76 (401)
                      ..+.|.+|+.++..++|||++.++..+.     ..||||++|+.+. .+..             ....+++..+..++.|
T Consensus        51 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (280)
T cd05049          51 ARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQ  130 (280)
T ss_pred             HHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHH
Confidence            4578999999999999999998884433     3499999865433 3321             1345899999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchh
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      ++.||.|||++ |++||||||+||+++.++.+||+|||+++.....      ....+++.|+|||.+.++.++.++||||
T Consensus       131 i~~~l~~lH~~-~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  209 (280)
T cd05049         131 IASGMVYLASQ-HFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS  209 (280)
T ss_pred             HHHHHHHHhhC-CeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHH
Confidence            99999999999 9999999999999999999999999998764322      1223467899999999889999999999


Q ss_pred             hHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          151 FGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       151 lG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |||++|||++ |..||.............     .......+...+..+.+++.+||+.||++||++.+|++.|.
T Consensus       210 lG~il~e~~~~g~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         210 FGVVLWEIFTYGKQPWYGLSNEEVIECIT-----QGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             HHHHHHHHHhcCCCCCCCCCHHHHHHHHH-----cCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            9999999998 888875532221111111     11122334567788999999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=2.1e-33  Score=259.51  Aligned_cols=202  Identities=19%  Similarity=0.282  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC----------------CCCCCHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE----------------TQPMKWAMRLRVAL   75 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~----------------~~~l~~~~~~~i~~   75 (401)
                      .+|.+|+.++..++|||++.+...+.     .+||||++++ +...+...                ...+++..+..++.
T Consensus        52 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  131 (283)
T cd05090          52 GEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAI  131 (283)
T ss_pred             HHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHH
Confidence            57889999999999999999885433     3599999864 44433211                23588999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      |++.||.|||++ |++||||||+|||++.++.+||+|||+++.....      ....++..|+|||.+.+..++.++|||
T Consensus       132 ~i~~al~~lH~~-~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~  210 (283)
T cd05090         132 QIAAGMEYLSSH-FFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIW  210 (283)
T ss_pred             HHHHHHHHHHhc-CeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhH
Confidence            999999999999 9999999999999999999999999998765332      223346679999999888899999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||||++|||++ |..||.+.......     ..+........+..++..+.+++.+||+.||.+||++.+|.+.|..
T Consensus       211 slG~il~el~~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         211 SFGVVLWEIFSFGLQPYYGFSNQEVI-----EMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCHHHHH-----HHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            99999999998 77776543211111     1111111223455677889999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.1e-33  Score=269.95  Aligned_cols=202  Identities=13%  Similarity=0.196  Sum_probs=157.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.+|+.+++.++||||+.++..+.           .+||||+++++...+.   ..+++..+..++.|++.||.|||
T Consensus        60 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~l~~~~~~~~~~qi~~aL~~LH  136 (355)
T cd07874          60 AKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLYQMLCGIKHLH  136 (355)
T ss_pred             HHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhcccHHHHHh---hcCCHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999998874332           3599999987766553   34899999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      +. ||+||||||+|||++.++.+||+|||+++.....   ....+|+.|+|||++.+..++.++|||||||++|+|++|+
T Consensus       137 ~~-givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~  215 (355)
T cd07874         137 SA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK  215 (355)
T ss_pred             hC-CcccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            99 9999999999999999999999999999875443   2346789999999999888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccc------------------ccccc----------cc------c--cCCCChHHHHHHHHHHHHhc
Q 015733          163 HIPPSHALDLIRDRNI------------------QTLTD----------SC------L--EGQFSSDEGTELVRLASRCL  206 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~------------------~~~~~----------~~------~--~~~~~~~~~~~l~~li~~cl  206 (401)
                      .||.+...........                  .....          +.      .  ....+...+..+.+||.+||
T Consensus       216 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL  295 (355)
T cd07874         216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKML  295 (355)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHh
Confidence            9986532110000000                  00000          00      0  00112224567899999999


Q ss_pred             ccCCCCCCCHHHHHHH
Q 015733          207 QYEPRERPNPRSLVTA  222 (401)
Q Consensus       207 ~~~p~~Rps~~~vl~~  222 (401)
                      +.||.+|||+.+++++
T Consensus       296 ~~dP~~Rps~~ell~h  311 (355)
T cd07874         296 VIDPAKRISVDEALQH  311 (355)
T ss_pred             cCCchhcCCHHHHhcC
Confidence            9999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.8e-33  Score=255.51  Aligned_cols=204  Identities=19%  Similarity=0.261  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++.+++|||++.+.....     .+||||+++ ++...+.. ....+++..+..++.|++.||.|||+. 
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~-  122 (261)
T cd05072          44 SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK-  122 (261)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            4578999999999999999999874333     349999986 45554433 346689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      +++||||||+||+++.++.++|+|||++.......     ...++..|+|||++..+.++.++|||||||++|+|+| |.
T Consensus       123 ~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~  202 (261)
T cd05072         123 NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGK  202 (261)
T ss_pred             CeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCC
Confidence            99999999999999999999999999998755432     1234568999999988889999999999999999998 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      .||............     ......+.+..++.++.+++.+||+.+|++|||+.++.+.|+.
T Consensus       203 ~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         203 IPYPGMSNSDVMSAL-----QRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             CCCCCCCHHHHHHHH-----HcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            887553222111111     1111222334567789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2e-33  Score=262.28  Aligned_cols=206  Identities=15%  Similarity=0.212  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+|.+|+.++..++|||++.++....    ..++||+++ ++...+......+++..+..++.|++.||.|||++ |++|
T Consensus        54 ~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH  132 (303)
T cd05110          54 VEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER-RLVH  132 (303)
T ss_pred             HHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhc-Ceec
Confidence            47899999999999999999885433    348999985 56555555556789999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                      |||||+||+++.++.+||+|||+++......      ...++..|++||.+.+..++.++|||||||++||+++ |+.||
T Consensus       133 ~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~  212 (303)
T cd05110         133 RDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY  212 (303)
T ss_pred             cccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998654321      1234578999999988889999999999999999997 88887


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .+......     ..+.........+..++..+.+++..||..+|++||++.+++..|..+...
T Consensus       213 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         213 DGIPTREI-----PDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             CCCCHHHH-----HHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            55322111     111111111223345667899999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1e-33  Score=267.23  Aligned_cols=201  Identities=14%  Similarity=0.183  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+..|+.++.++ +||||++++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||+
T Consensus        40 ~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~-~iv  118 (329)
T cd05618          40 DWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER-GII  118 (329)
T ss_pred             HHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            4577888888776 7999999885444     34999999765554444557799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||+||..||..
T Consensus       119 H~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         119 YRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             eCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            999999999999999999999999875322    2245689999999999988899999999999999999999999842


Q ss_pred             hhhHHhhhc-----cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH------HHHHH
Q 015733          168 HALDLIRDR-----NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP------RSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~------~~vl~  221 (401)
                      .........     ....+...  ...+|...+..+.+++.+||+.||.+||++      .+++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05618         199 VGSSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  261 (329)
T ss_pred             CCCcCCcccccHHHHHHHHhcC--CCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhc
Confidence            110000000     00111111  223566778889999999999999999984      56654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=7.6e-34  Score=268.65  Aligned_cols=203  Identities=17%  Similarity=0.173  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|+.++..++ ||||+.+...+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        48 ~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  126 (332)
T cd05614          48 VEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKL-GI  126 (332)
T ss_pred             HHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            456888999999994 899998874443     34999999765444444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+. .++.++|||||||++|||+||..|
T Consensus       127 vHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~p  206 (332)
T cd05614         127 VYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASP  206 (332)
T ss_pred             EecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCC
Confidence            99999999999999999999999998764322     235689999999999864 478899999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      |...............+..  ....++...+..+.+++.+||+.||++||     ++.+++.+
T Consensus       207 f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         207 FTLEGERNTQSEVSRRILK--CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             CCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence            8532111000000011111  12345566788899999999999999999     67777764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=7.9e-34  Score=267.45  Aligned_cols=193  Identities=18%  Similarity=0.196  Sum_probs=152.9

Q ss_pred             HHHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+++.|.. ++..++||||++++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||+
T Consensus        40 ~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-giv  118 (323)
T cd05575          40 KHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSL-NII  118 (323)
T ss_pred             HHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            44555554 457899999999874443     34999999765544444567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|||++|..||..
T Consensus       119 H~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~  198 (323)
T cd05575         119 YRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYS  198 (323)
T ss_pred             eCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCC
Confidence            9999999999999999999999998753221    234689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .............      ....+...+..+.++|.+||+.||.+||++.
T Consensus       199 ~~~~~~~~~i~~~------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         199 RDTAEMYDNILNK------PLRLKPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCHHHHHHHHHcC------CCCCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence            4322211111111      1123445678899999999999999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2e-33  Score=266.10  Aligned_cols=207  Identities=18%  Similarity=0.311  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCc-ccccccCC---------------------------
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSGE---------------------------   61 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~~---------------------------   61 (401)
                      .+.+..|+.++.++ +||||+.++....      ..+|||++++ +...+...                           
T Consensus        54 ~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (337)
T cd05054          54 YKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRL  133 (337)
T ss_pred             HHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhcccccccccccccccccccccccccccc
Confidence            35688899999999 8999998874322      3489999964 33333211                           


Q ss_pred             ---------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCe
Q 015733           62 ---------------------------------TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNP  108 (401)
Q Consensus        62 ---------------------------------~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~  108 (401)
                                                       ..++++..+..++.||+.||.|||++ ||+||||||+|||++.++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~ivHrDikp~Nill~~~~~v  212 (337)
T cd05054         134 DSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASR-KCIHRDLAARNILLSENNVV  212 (337)
T ss_pred             ccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEeCCCcE
Confidence                                             13689999999999999999999999 99999999999999999999


Q ss_pred             EEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhcccccc
Q 015733          109 RLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTL  181 (401)
Q Consensus       109 kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~  181 (401)
                      +|+|||++......      ....++..|+|||++.+..++.++|||||||++|||++ |..||.......    .....
T Consensus       213 kL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~----~~~~~  288 (337)
T cd05054         213 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE----EFCRR  288 (337)
T ss_pred             EEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH----HHHHH
Confidence            99999999875322      12234678999999999999999999999999999998 888875421110    01111


Q ss_pred             ccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          182 TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       182 ~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .........+...+.++.+++.+||+.+|++||++.+|++.|..+..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         289 LKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            11111223345567889999999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2.2e-33  Score=261.33  Aligned_cols=207  Identities=16%  Similarity=0.229  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCC---------------CCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE---------------TQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~---------------~~~l~~~~~~~i~   74 (401)
                      .+.|.+|+.++.++ +|||++.++..+.     ..||||+++ ++...+...               ...+++..+..++
T Consensus        46 ~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  125 (297)
T cd05089          46 HRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFA  125 (297)
T ss_pred             HHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHH
Confidence            35799999999999 7999998884443     359999985 444444321               1358999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhh
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSF  151 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  151 (401)
                      .|++.||+|||+. |++||||||+|||++.++.+||+|||++......   .....+..|+|||++.+..++.++|||||
T Consensus       126 ~qi~~al~~lH~~-~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSl  204 (297)
T cd05089         126 SDVATGMQYLSEK-QFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSF  204 (297)
T ss_pred             HHHHHHHHHHHHC-CcccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHH
Confidence            9999999999999 9999999999999999999999999998653321   11223457999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          152 GTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       152 G~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||++|||++ |..||...........     .........+..++..+.+|+.+||+.+|.+|||+.++++.|..+...
T Consensus       205 G~il~el~t~g~~pf~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~  278 (297)
T cd05089         205 GVLLWEIVSLGGTPYCGMTCAELYEK-----LPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEA  278 (297)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHHHH-----HhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            999999997 8888755432211111     111222334556778899999999999999999999999998877643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=3.2e-33  Score=259.56  Aligned_cols=204  Identities=18%  Similarity=0.273  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-cccccc---------------CCCCCCCHHHHHHHHH
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS---------------GETQPMKWAMRLRVAL   75 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~---------------~~~~~l~~~~~~~i~~   75 (401)
                      .++.+|+.++.++ +|||++++...+.     ..+|||++++ +...+.               .....+++..++.++.
T Consensus        60 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  139 (293)
T cd05053          60 SDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAY  139 (293)
T ss_pred             HHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHH
Confidence            5688999999999 8999999884333     3499999864 444332               2345789999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      |++.||.|||+. |++||||||+||++++++.+||+|||+++.......      ..++..|+|||.+.+..++.++|||
T Consensus       140 qi~~al~~LH~~-~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  218 (293)
T cd05053         140 QVARGMEFLASK-KCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVW  218 (293)
T ss_pred             HHHHHHHHHHHC-CccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCccccee
Confidence            999999999999 999999999999999999999999999887543221      1235679999999888899999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||||++||+++ |..|+.........     ...........+..++..+.+|+.+||+.+|.+|||+.++++.|+.+.
T Consensus       219 slG~il~el~~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         219 SFGVLLWEIFTLGGSPYPGIPVEELF-----KLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             ehhhHHHHHhcCCCCCCCCCCHHHHH-----HHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            99999999998 87776543221111     111112222345567788999999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=3.5e-33  Score=267.45  Aligned_cols=202  Identities=14%  Similarity=0.192  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.+|+.+++.++||||++++..+.           ..||||+++++...+.   ..+++..+..++.|++.||.|||
T Consensus        67 ~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH  143 (364)
T cd07875          67 AKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ---MELDHERMSYLLYQMLCGIKHLH  143 (364)
T ss_pred             HHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCCCCHHHHHH---hcCCHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999998773321           3599999988776653   34889999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++ ||+||||||+|||++.++.+||+|||+++.....   ....+|..|+|||++.+..++.++|||||||++|+|++|+
T Consensus       144 ~~-~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~  222 (364)
T cd07875         144 SA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG  222 (364)
T ss_pred             hC-CeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCC
Confidence            99 9999999999999999999999999999875443   2346789999999999888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccc---------------------------------cccccc---cCCCChHHHHHHHHHHHHhc
Q 015733          163 HIPPSHALDLIRDRNIQT---------------------------------LTDSCL---EGQFSSDEGTELVRLASRCL  206 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~---------------------------------~~~~~~---~~~~~~~~~~~l~~li~~cl  206 (401)
                      .||...............                                 +.....   ........+..+.+||.+||
T Consensus       223 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL  302 (364)
T cd07875         223 VLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKML  302 (364)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhc
Confidence            998653211100000000                                 000000   00011123467899999999


Q ss_pred             ccCCCCCCCHHHHHHH
Q 015733          207 QYEPRERPNPRSLVTA  222 (401)
Q Consensus       207 ~~~p~~Rps~~~vl~~  222 (401)
                      +.||.+|||+.+++++
T Consensus       303 ~~dP~~R~t~~e~L~h  318 (364)
T cd07875         303 VIDASKRISVDEALQH  318 (364)
T ss_pred             CcCcccCCCHHHHhcC
Confidence            9999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=3.1e-33  Score=259.34  Aligned_cols=205  Identities=16%  Similarity=0.247  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc-----------------------CCCCCCCHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS-----------------------GETQPMKWA   68 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~-----------------------~~~~~l~~~   68 (401)
                      +.|.+|+.++..++||||+++...+.     ..|+||++++ +...+.                       ....++++.
T Consensus        48 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  127 (290)
T cd05045          48 RDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMG  127 (290)
T ss_pred             HHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHH
Confidence            57999999999999999999884333     3499999965 333221                       112468999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCcc
Q 015733           69 MRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRV  142 (401)
Q Consensus        69 ~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~  142 (401)
                      .++.++.|++.||.|||+. +++||||||+||++++++.+||+|||+++......      ...++..|+|||.+.+..+
T Consensus       128 ~~~~i~~~i~~~l~~LH~~-~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~  206 (290)
T cd05045         128 DLISFAWQISRGMQYLAEM-KLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIY  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCc
Confidence            9999999999999999999 99999999999999999999999999987643321      2234678999999988889


Q ss_pred             CCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          143 TPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       143 ~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      +.++||||||+++|||+| |..||.......     +............+..++.++.+++.+||+.+|.+||++.+++.
T Consensus       207 ~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         207 TTQSDVWSFGVLLWEIVTLGGNPYPGIAPER-----LFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             chHhHHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            999999999999999999 887775432211     11122222233445667789999999999999999999999999


Q ss_pred             HHHcccc
Q 015733          222 ALVTLQK  228 (401)
Q Consensus       222 ~l~~~~~  228 (401)
                      .|+.+..
T Consensus       282 ~l~~~~~  288 (290)
T cd05045         282 ELEKMMV  288 (290)
T ss_pred             HHHHHHh
Confidence            9987653

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=2.5e-33  Score=258.20  Aligned_cols=202  Identities=15%  Similarity=0.242  Sum_probs=158.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC------CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE------TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~------~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...|.+|+.+++.++|+||+.++....     ..||||++|+ +...+...      ...+++..+.+++.||+.||.||
T Consensus        53 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~L  132 (277)
T cd05036          53 ESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYL  132 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999884332     3499999865 44444322      13589999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCC---CeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDDDV---NPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~---~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      |++ +++||||||+||+++.++   .+||+|||+++......      ....+..|+|||++.+..++.++|||||||++
T Consensus       133 H~~-~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il  211 (277)
T cd05036         133 EEN-HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLL  211 (277)
T ss_pred             HHC-CEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHH
Confidence            999 999999999999998765   58999999988753322      11224679999999988899999999999999


Q ss_pred             HHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          156 LDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       156 ~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |||++ |..||........     ...+........+..++..+.+++.+||+.+|++|||+.+|++.|.
T Consensus       212 ~el~~~g~~pf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         212 WEIFSLGYMPYPGRTNQEV-----MEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             HHHHcCCCCCCCCCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            99997 8887765322211     1111112223445667889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.4e-33  Score=255.65  Aligned_cols=203  Identities=19%  Similarity=0.252  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeec-----------cccEeeecCCc-cccccc-----CCCCCCCHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMF-----------QIPSYEFHCLT-FSNNFS-----GETQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~-----------~~~v~Ey~~~~-l~~~~~-----~~~~~l~~~~~~~i~~qi~~~   80 (401)
                      ..|..|+..+..++|||++.++...           ...||||++++ +...+.     .....+++..+..++.|++.|
T Consensus        46 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a  125 (273)
T cd05035          46 EEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG  125 (273)
T ss_pred             HHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHH
Confidence            5799999999999999999887422           13489999965 333332     123468999999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHH
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      |.|||+. +++||||||+||++++++.+||+|||+++.......      ...+..|++||.+.+..++.++|||||||+
T Consensus       126 L~~lH~~-~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~i  204 (273)
T cd05035         126 MEYLSNR-NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVT  204 (273)
T ss_pred             HHHHHhC-CeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHH
Confidence            9999999 999999999999999999999999999887543321      234568999999988889999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      +|||++ |..||.+......    ...+.. ......+..++..+.+++.+||+.||++|||+.+++..|..+
T Consensus       205 l~el~~~g~~p~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         205 MWEIATRGQTPYPGVENHEI----YDYLRH-GNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHHHhCCCCCCCCCCHHHH----HHHHHc-CCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            999999 7777654322111    111111 112234566788999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.6e-33  Score=254.22  Aligned_cols=202  Identities=19%  Similarity=0.247  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+|.+|+.++.+++||||+.++....     .+||||+.++ +...+......+++..++.++.||+.||.|||+. |+
T Consensus        43 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  121 (256)
T cd05113          43 EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK-QF  121 (256)
T ss_pred             HHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            467999999999999999999885433     4499999865 5555544445799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +|+||||+||+++.++.+||+|||.++.......     ..++..|++||.+.+..++.++|||||||++|+|+| |..|
T Consensus       122 ~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p  201 (256)
T cd05113         122 IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMP  201 (256)
T ss_pred             eccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999876543321     224567999999988889999999999999999999 8877


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |..............     ......+...+..+.+++.+||+.+|.+|||+.+++..|+
T Consensus       202 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         202 YERFNNSETVEKVSQ-----GLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             cCcCCHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            654322111111111     1111233445788999999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.8e-33  Score=261.40  Aligned_cols=208  Identities=16%  Similarity=0.225  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i   73 (401)
                      ....|.+|+.++.++ +|||+++++..+.     ..||||++++ +...+...               ...+++..++.+
T Consensus        50 ~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (303)
T cd05088          50 DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF  129 (303)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHH
Confidence            346788999999999 8999999884433     3499999864 44444321               236899999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchh
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      +.|++.||+|||++ |++||||||+|||++.++.+||+|||++......   ....++..|+|||.+.+..++.++||||
T Consensus       130 ~~qi~~al~~LH~~-gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  208 (303)
T cd05088         130 AADVARGMDYLSQK-QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  208 (303)
T ss_pred             HHHHHHHHHHHHhC-CccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchh
Confidence            99999999999999 9999999999999999999999999998643221   1122356799999998888999999999


Q ss_pred             hHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          151 FGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       151 lG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |||++|||+| |..||...........     .........+...+..+.+|+.+||+.+|++|||+.+++..|..+...
T Consensus       209 lG~il~ellt~g~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         209 YGVLLWEIVSLGGTPYCGMTCAELYEK-----LPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             hhhHHHHHHhcCCCCcccCChHHHHHH-----HhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            9999999998 8888754322111111     111112233445677899999999999999999999999998876544

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.1e-33  Score=266.82  Aligned_cols=195  Identities=18%  Similarity=0.180  Sum_probs=153.8

Q ss_pred             HHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           19 YFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        19 ~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+..|.. ++..++||||++++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. ||+|
T Consensus        41 ~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-giiH  119 (325)
T cd05602          41 HIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL-NIVY  119 (325)
T ss_pred             HHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CeEe
Confidence            4455544 567889999999874443     34999999765555554566788999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      |||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       120 rDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         120 RDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             cCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999875322    23456899999999999888999999999999999999999998654


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ........    +...  ...+++..+..+.+++.+||+.||.+||++.+.+
T Consensus       200 ~~~~~~~~----i~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         200 NTAEMYDN----ILNK--PLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             CHHHHHHH----HHhC--CcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCH
Confidence            32221111    1111  1123456778899999999999999999977543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=3.9e-33  Score=256.01  Aligned_cols=204  Identities=16%  Similarity=0.212  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i~   74 (401)
                      .+.|.+|+.++.++ +|||++.++..+.     .+||||++++ +...+...               ...+++..+..++
T Consensus        39 ~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  118 (270)
T cd05047          39 HRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA  118 (270)
T ss_pred             HHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHH
Confidence            46788999999999 7999998874333     3599999854 54444321               2358999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhh
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSF  151 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  151 (401)
                      .|++.||+|||+. |++||||||+||++++++.+||+|||++......   .....+..|+|||++....++.++|||||
T Consensus       119 ~~i~~al~~lH~~-~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~sl  197 (270)
T cd05047         119 ADVARGMDYLSQK-QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSY  197 (270)
T ss_pred             HHHHHHHHHHHHC-CEeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHH
Confidence            9999999999999 9999999999999999999999999998643221   11223567999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          152 GTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       152 G~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||++|||++ |..||.........     ...........+..++.++.+++.+||+.+|.+|||+.+++..|..+
T Consensus       198 G~il~el~~~g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         198 GVLLWEIVSLGGTPYCGMTCAELY-----EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             HHHHHHHHcCCCCCccccCHHHHH-----HHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence            999999997 88887543211111     11111122234455677899999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=2.6e-33  Score=270.26  Aligned_cols=160  Identities=21%  Similarity=0.286  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCcccc
Q 015733           64 PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYL  137 (401)
Q Consensus        64 ~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~  137 (401)
                      .+++..+..++.|++.||.|||+. +++||||||+|||++.++.+||+|||+++......      ...+++.|+|||.+
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  311 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLASK-NCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI  311 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhh
Confidence            588999999999999999999999 99999999999999999999999999988643321      22356789999999


Q ss_pred             ccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          138 RTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       138 ~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      .+..++.++|||||||++|||++ |..||........    ....+........+..++..+.+++.+||+.+|++|||+
T Consensus       312 ~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  387 (400)
T cd05105         312 FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST----FYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSF  387 (400)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH----HHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence            98889999999999999999997 8888754321110    111111112233455678889999999999999999999


Q ss_pred             HHHHHHHHcccc
Q 015733          217 RSLVTALVTLQK  228 (401)
Q Consensus       217 ~~vl~~l~~~~~  228 (401)
                      .+|.+.|..+.+
T Consensus       388 ~~l~~~l~~l~~  399 (400)
T cd05105         388 LHLSDIVESLLP  399 (400)
T ss_pred             HHHHHHHHHHcC
Confidence            999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.8e-33  Score=253.96  Aligned_cols=202  Identities=20%  Similarity=0.271  Sum_probs=160.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|..|+.++.+++|||++.++..+.     ..||||++|+ +...+......+++..+..++.|++.||.|||+. |
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  120 (256)
T cd05059          42 SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESN-G  120 (256)
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3468999999999999999999874433     3499999865 5555544455789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCcc-----ccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-----STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||++++++.+||+|||+++........     .++..|+|||.+.+..++.++||||||+++|+++| |..
T Consensus       121 i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~  200 (256)
T cd05059         121 FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKM  200 (256)
T ss_pred             cccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCC
Confidence            999999999999999999999999998765433211     12357999999998889999999999999999999 677


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ||..........     .+........+..++..+.+++.+||..+|++|||+.+++..|
T Consensus       201 p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         201 PYERFSNSEVVE-----SVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCCCCHHHHHH-----HHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            765432211111     1111122334556788999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.5e-33  Score=264.16  Aligned_cols=196  Identities=17%  Similarity=0.246  Sum_probs=154.0

Q ss_pred             HHHHHHHHHH---hhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           18 TYFIVSLVLI---ASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        18 ~~f~~E~~~l---~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+..|+.++   ..++||||+.++..+.     .+||||++|+.+..... ...+++..+..++.||+.||.|||+. |
T Consensus        44 ~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~-~~~l~~~~~~~~~~qi~~al~~lH~~-~  121 (324)
T cd05589          44 ESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH-TDVFSEPRAVFYAACVVLGLQYLHEN-K  121 (324)
T ss_pred             HHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4566665554   5678999999885444     34999999765544443 35799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ++||||||+||+++.++.+||+|||+++....    .....|++.|+|||.+.+..++.++|||||||++|||++|..||
T Consensus       122 ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf  201 (324)
T cd05589         122 IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPF  201 (324)
T ss_pred             eEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999875322    22456899999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~  221 (401)
                      ..........    .+...  ...+|..++..+.++|.+||+.||.+||     ++.+++.
T Consensus       202 ~~~~~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         202 PGDDEEEVFD----SIVND--EVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCCCHHHHHH----HHHhC--CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            6543221111    11111  1234566788899999999999999999     4666655

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.9e-33  Score=253.95  Aligned_cols=203  Identities=17%  Similarity=0.267  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+|.+|+.++++++|||++.++..+.     ..||||++| ++...+... ...+++..+..++.|++.||.|||+. |
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~  123 (261)
T cd05068          45 PKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ-N  123 (261)
T ss_pred             HHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            567999999999999999998884333     349999975 455555433 35789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc--cc---cccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS--YS---TNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~---~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.++|+|||+++.......  ..   .+..|+|||.+.+..++.++||||||+++|||+| |+.
T Consensus       124 i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~  203 (261)
T cd05068         124 YIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRM  203 (261)
T ss_pred             eeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999887553221  12   2357999999998889999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||.+........     .+........+..++..+.+++.+||+.+|.+||++.++...|+.
T Consensus       204 p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         204 PYPGMTNAEVLQ-----QVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             CCCCCCHHHHHH-----HHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            775532211111     111111223445677889999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.9e-33  Score=263.95  Aligned_cols=198  Identities=17%  Similarity=0.178  Sum_probs=156.0

Q ss_pred             hHHHHHHHHHHhh-hCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIAS-MSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~-~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+..|..++.. ++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++ |+
T Consensus        39 ~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~-~i  117 (316)
T cd05619          39 VECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSK-GI  117 (316)
T ss_pred             HHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3456778888775 59999999885443     34999999765544444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       118 vHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~  197 (316)
T cd05619         118 VYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             EeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875322    123568999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR-SLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-~vl~  221 (401)
                      ..........    +..  ....+|...+.++.+++.+||+.||.+||++. +++.
T Consensus       198 ~~~~~~~~~~----i~~--~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         198 GHDEEELFQS----IRM--DNPCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             CCCHHHHHHH----HHh--CCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence            5432211111    100  11234455678899999999999999999997 5544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.6e-33  Score=258.56  Aligned_cols=202  Identities=17%  Similarity=0.233  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCC--------------CCCCHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGET--------------QPMKWAMRLRVALH   76 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~--------------~~l~~~~~~~i~~q   76 (401)
                      ...|.+|+.++..++||||+.+...+.     ..||||++++ +...+....              ..+++..+..++.|
T Consensus        51 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  130 (280)
T cd05092          51 RQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQ  130 (280)
T ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHH
Confidence            468999999999999999999884333     3499999864 444433211              35899999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchh
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      ++.||.|||+. |++||||||+|||+++++.+||+|||++.......      ...+++.|+|||.+.+..++.++||||
T Consensus       131 i~~al~~LH~~-~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  209 (280)
T cd05092         131 IASGMVYLASL-HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS  209 (280)
T ss_pred             HHHHHHHHHHC-CeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHH
Confidence            99999999999 99999999999999999999999999987643321      123467899999999888999999999


Q ss_pred             hHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          151 FGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       151 lG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |||++|||++ |..||........    ...+ ........+..++..+.+++.+||+.||.+||++.+|...|+
T Consensus       210 lG~il~el~~~g~~p~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         210 FGVVLWEIFTYGKQPWYQLSNTEA----IECI-TQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HHHHHHHHHcCCCCCCccCCHHHH----HHHH-HcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            9999999998 7777644321111    1111 111122334567788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=5.7e-33  Score=253.38  Aligned_cols=204  Identities=20%  Similarity=0.289  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .++.|.+|+.++++++|||++.++....    .++|||+++ ++...+.. ....+++..+..++.|++.||.|||+. |
T Consensus        44 ~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~  122 (260)
T cd05070          44 SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM-N  122 (260)
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3578999999999999999999884333    349999986 45555443 245689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||++++++.++|+|||++.......     ...++..|+|||.+.+..++.++||||||+++|+|++ |..
T Consensus       123 i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~  202 (260)
T cd05070         123 YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRV  202 (260)
T ss_pred             cccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999987654322     1224567999999988889999999999999999999 777


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||.........    .. .......+.+...+..+.+|+.+||..+|++|||+.++...|+.
T Consensus       203 p~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         203 PYPGMNNREVL----EQ-VERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CCCCCCHHHHH----HH-HHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            77543211111    11 11122234456678889999999999999999999999988864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=3.4e-33  Score=260.65  Aligned_cols=205  Identities=17%  Similarity=0.280  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.++.++ +||||++++..+.     .+||||++++ +...+... ...+++..+..++.|++.||.|||++ 
T Consensus        82 ~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~-  160 (302)
T cd05055          82 REALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK-  160 (302)
T ss_pred             HHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            45799999999999 7999999884433     3499999854 55554432 33489999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      +++|+||||+||+++.++.++|+|||+++......      ...++..|+|||.+.+..++.++|||||||++|+|++ |
T Consensus       161 ~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g  240 (302)
T cd05055         161 NCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLG  240 (302)
T ss_pred             CeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999988654322      1234678999999998889999999999999999998 8


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..||........    .............+...+..+.+++.+||+.+|++|||+.+++..|..+
T Consensus       241 ~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         241 SNPYPGMPVDSK----FYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             CCCcCCCCchHH----HHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            887654321110    1111111222223445677899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.4e-33  Score=268.38  Aligned_cols=201  Identities=13%  Similarity=0.074  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+..|+.++.+++||||+.++..++     .+||||++|+.+..+....+.+++..+..++.|++.||+|||++ ||+
T Consensus        45 ~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~-giv  123 (363)
T cd05628          45 VGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQL-GFI  123 (363)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-CeE
Confidence            456788999999999999999885444     35999999765554444567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---------------------------------------CccccccccC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---------------------------------------RSYSTNLAFT  132 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---------------------------------------~~~~~~~~y~  132 (401)
                      ||||||+|||++.++.+||+|||+++.....                                       ...+||+.|+
T Consensus       124 HrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~  203 (363)
T cd05628         124 HRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYI  203 (363)
T ss_pred             ecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCcccc
Confidence            9999999999999999999999998753211                                       1246899999


Q ss_pred             CccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCCh--HHHHHHHHHHHHhcc--c
Q 015733          133 PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSS--DEGTELVRLASRCLQ--Y  208 (401)
Q Consensus       133 aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~--~  208 (401)
                      |||++.+..++.++|||||||++|||++|..||.+.........    +........+|.  ..+.++.++|.+++.  .
T Consensus       204 aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~----i~~~~~~~~~p~~~~~s~~~~~li~~l~~~~~  279 (363)
T cd05628         204 APEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKK----VMNWKETLIFPPEVPISEKAKDLILRFCCEWE  279 (363)
T ss_pred             CHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHH----HHcCcCcccCCCcCCCCHHHHHHHHHHcCChh
Confidence            99999988899999999999999999999999875432221111    111000011222  356788888887553  2


Q ss_pred             CCCCCCCHHHHHHH
Q 015733          209 EPRERPNPRSLVTA  222 (401)
Q Consensus       209 ~p~~Rps~~~vl~~  222 (401)
                      ++..||++.+|+.+
T Consensus       280 ~r~~r~~~~ei~~h  293 (363)
T cd05628         280 HRIGAPGVEEIKTN  293 (363)
T ss_pred             hcCCCCCHHHHhCC
Confidence            34456899999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2e-33  Score=264.50  Aligned_cols=193  Identities=18%  Similarity=0.206  Sum_probs=153.4

Q ss_pred             HHHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+..|.. ++..++||||+++...+.     .+||||++|+.+.........+++..+..++.||+.||.|||+. ||+
T Consensus        40 ~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~iv  118 (321)
T cd05603          40 NHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSL-NII  118 (321)
T ss_pred             HHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            44555654 578899999999885443     34999999765544444556789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.+||+|||+++....    .....||+.|+|||.+.+..++.++|||||||++|||++|..||..
T Consensus       119 H~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  198 (321)
T cd05603         119 YRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYS  198 (321)
T ss_pred             eccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCC
Confidence            999999999999999999999999875322    1234689999999999988899999999999999999999999866


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .............      ...+|...+..+.+++.+||+.||.+||+..
T Consensus       199 ~~~~~~~~~i~~~------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         199 RDVSQMYDNILHK------PLQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCHHHHHHHHhcC------CCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence            4322221111111      1234566778899999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-33  Score=269.44  Aligned_cols=202  Identities=19%  Similarity=0.163  Sum_probs=160.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+...|..|+.++..++||||+.++..+.     ..||||++|+.+..+......+++..+..++.||+.||.|||+. |
T Consensus        43 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~-g  121 (350)
T cd05573          43 NQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKL-G  121 (350)
T ss_pred             cHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34567899999999999999999874333     34999998654444433447899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---------------------------------ccccccccCCccc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---------------------------------SYSTNLAFTPPEY  136 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---------------------------------~~~~~~~y~aPE~  136 (401)
                      ++||||||+|||++.++.+||+|||++.......                                 ...||+.|+|||+
T Consensus       122 iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  201 (350)
T cd05573         122 FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEV  201 (350)
T ss_pred             eeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHH
Confidence            9999999999999999999999999987644322                                 3457899999999


Q ss_pred             cccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccccccc--ccccCCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          137 LRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTD--SCLEGQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       137 ~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      +.+..++.++|||||||++|||++|+.||.........    ..+..  .....+....++.++.++|.+||. +|.+||
T Consensus       202 ~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~----~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~  276 (350)
T cd05573         202 LRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETY----NKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRL  276 (350)
T ss_pred             HcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHH----HHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcC
Confidence            99999999999999999999999999998764322111    11111  111111112258889999999997 999999


Q ss_pred             C-HHHHHHH
Q 015733          215 N-PRSLVTA  222 (401)
Q Consensus       215 s-~~~vl~~  222 (401)
                      + +.+++.+
T Consensus       277 ~s~~~ll~h  285 (350)
T cd05573         277 GSFEEIKSH  285 (350)
T ss_pred             CCHHHHhcC
Confidence            9 9999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=6.5e-33  Score=259.38  Aligned_cols=203  Identities=15%  Similarity=0.151  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+|.+|+.+++.++|||++.+...+.     .+||||++|++...+.....++++..+..++.|++.||.|||+. |++
T Consensus        59 ~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~-~i~  137 (307)
T cd06607          59 WQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSH-ERI  137 (307)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence            357899999999999999999884433     34999999988777765566799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      ||||+|+||++++++.++|+|||++..........+++.|+|||++.   .+.++.++||||||+++|||+||..|+...
T Consensus       138 H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         138 HRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             ecCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence            99999999999999999999999998776666677889999999885   356889999999999999999999887543


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ......    ..+.........+..++..+.++|.+||+.+|++||++.+|+.+..
T Consensus       218 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~  269 (307)
T cd06607         218 NAMSAL----YHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRF  269 (307)
T ss_pred             cHHHHH----HHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChh
Confidence            211110    0000000011113346778999999999999999999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-33  Score=269.71  Aligned_cols=201  Identities=15%  Similarity=0.219  Sum_probs=168.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecC-CcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHC-LTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~-~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+|++|+.++.+|+||++|++++...    .+|||+++ |+|++.++. ....|.......++.||+.||.||.++ +
T Consensus       154 ~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk-r  232 (1039)
T KOG0199|consen  154 IMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK-R  232 (1039)
T ss_pred             hHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh-h
Confidence            3578999999999999999999995544    34999999 667776665 567789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCccc-------cccccCCccccccCccCCCCcchhhHHHHHHHHhC-
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS-------TNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~-------~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg-  161 (401)
                      +|||||..+|+|+-..-.|||+|||+.+..+......       -.+.|+|||.++..+++.++|||+|||+||||+|+ 
T Consensus       233 lvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyG  312 (1039)
T KOG0199|consen  233 LVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYG  312 (1039)
T ss_pred             hhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccC
Confidence            9999999999999999999999999999877654321       24689999999999999999999999999999985 


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.|+.+..     ...+-+.++..-+-..|+.|+.++.+++..||..+|.+||||..|.+.
T Consensus       313 EePW~G~~-----g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  313 EEPWVGCR-----GIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             CCCCCCCC-----HHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence            46655432     122233344445556789999999999999999999999999999743

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=9.1e-33  Score=252.06  Aligned_cols=204  Identities=20%  Similarity=0.288  Sum_probs=162.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .++.|.+|+.++.+++|||++.++....    ..||||+++ ++...+.. ....+++..+..++.|++.||.|||+. |
T Consensus        44 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~  122 (260)
T cd05069          44 MPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM-N  122 (260)
T ss_pred             cHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3468999999999999999998874433    349999986 45555543 344589999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++|+||||+||++++++.++|+|||++.......     ...++..|+|||...+..++.++||||||+++|+|+| |..
T Consensus       123 i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~  202 (260)
T cd05069         123 YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRV  202 (260)
T ss_pred             EeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999987654322     1234578999999988889999999999999999999 777


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||.+.........    + ........+...+..+.+++.+||+++|.+||++.+|++.|+.
T Consensus       203 p~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         203 PYPGMVNREVLEQ----V-ERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             CCCCCCHHHHHHH----H-HcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            7755322211111    1 1111223455677889999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.4e-33  Score=264.34  Aligned_cols=193  Identities=18%  Similarity=0.188  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHhhhCCCe-EEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFI-LLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~n-iv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|+.++..++|++ ++.+..++.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        44 ~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i  122 (324)
T cd05587          44 VECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSK-GI  122 (324)
T ss_pred             HHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            457888999999998875 665554333     34999999765544444556789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||++.....    .....||+.|+|||++.+..++.++|||||||++|+|+||+.||.
T Consensus       123 vH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~  202 (324)
T cd05587         123 IYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD  202 (324)
T ss_pred             EecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875321    123468999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ..........    +..  ....+|...+.++.+++.+||+.||.+|++.
T Consensus       203 ~~~~~~~~~~----i~~--~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         203 GEDEDELFQS----IME--HNVSYPKSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCHHHHHHH----HHc--CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence            5432211111    111  1224566678889999999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=4.7e-33  Score=254.79  Aligned_cols=209  Identities=15%  Similarity=0.168  Sum_probs=163.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS---GETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+|.+|+.++..++|||++.++..+.     ..+|||++|+ +...+.   .....+++..++.++.|++.||.|||+
T Consensus        45 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~  124 (267)
T cd08229          45 ARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS  124 (267)
T ss_pred             HHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998884332     3499999964 444432   234678999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      . |++|+||||+||+++.++.++|+|||++.......    ...++..|+|||++.+..++.++||||||+++|+|++|.
T Consensus       125 ~-~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~  203 (267)
T cd08229         125 R-RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             C-CeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCC
Confidence            9 99999999999999999999999999987654332    345788999999998888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .||.........  ....+.........+...+..+.+++.+||+.+|.+|||+.+|++.+.++.
T Consensus       204 ~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         204 SPFYGDKMNLYS--LCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             CCcccccchHHH--HhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            987543221110  011111111111122356788999999999999999999999999988764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2.8e-33  Score=277.24  Aligned_cols=201  Identities=15%  Similarity=0.236  Sum_probs=161.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-------------cccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-------------QIPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIA   78 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-------------~~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~   78 (401)
                      ....+.+|+..+..++|+|++.+...+             -.+||||++++ +...+..   ...++++..+..++.|++
T Consensus        74 ~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll  153 (496)
T PTZ00283         74 DKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVL  153 (496)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence            346788999999999999999876322             13599999965 4444432   346799999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC------CCccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||.|||+. ||+||||||+|||++.++.+||+|||+++....      .....||+.|+|||++.+..++.++||||||
T Consensus       154 ~aL~~lH~~-~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlG  232 (496)
T PTZ00283        154 LAVHHVHSK-HMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLG  232 (496)
T ss_pred             HHHHHHHhC-CEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHH
Confidence            999999999 999999999999999999999999999876432      2345689999999999988899999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |++|||++|+.||...............     .....+..++.++.+++.+||+.||.+|||+.+++.+
T Consensus       233 vilyeLltG~~Pf~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        233 VLLYELLTLKRPFDGENMEEVMHKTLAG-----RYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHhcC-----CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            9999999999998654322211111111     1123456778899999999999999999999999864

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=5.3e-33  Score=254.66  Aligned_cols=205  Identities=17%  Similarity=0.237  Sum_probs=162.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+|..|+.++.+++|||++++...+.     .+||||++++ +...+......+++..+..++.|++.||.|||+. |
T Consensus        49 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~  127 (268)
T cd05063          49 QRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDM-N  127 (268)
T ss_pred             HHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3567999999999999999999884444     3499999965 4444444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      ++||||||+||+++.++.+||+|||++........       ...++.|+|||++....++.++|||||||++||+++ |
T Consensus       128 i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g  207 (268)
T cd05063         128 YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFG  207 (268)
T ss_pred             eeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999876543211       112357999999988889999999999999999997 8


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..||.........    ..+ ......+.+..++..+.+++.+||+.+|++||++.+|++.|.++
T Consensus       208 ~~p~~~~~~~~~~----~~i-~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         208 ERPYWDMSNHEVM----KAI-NDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CCCCCcCCHHHHH----HHH-hcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            8887543221111    111 11122233455678899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=8.5e-33  Score=251.75  Aligned_cols=203  Identities=22%  Similarity=0.311  Sum_probs=163.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC--------CCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE--------TQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~--------~~~l~~~~~~~i~~qi~~~l   81 (401)
                      +...+..|+..+..++|+|++.++....     .+||||++++ +...+...        ...+++..+..++.|++.||
T Consensus        39 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al  118 (262)
T cd00192          39 ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGM  118 (262)
T ss_pred             HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHH
Confidence            3578999999999999999999873332     3499999754 55544443        47899999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      +|||++ |++||||+|+||+++.++.+||+|||.+......      ....+++.|+|||.+....++.++||||||+++
T Consensus       119 ~~lH~~-~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  197 (262)
T cd00192         119 EYLASK-KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLL  197 (262)
T ss_pred             HHHHcC-CcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHH
Confidence            999999 9999999999999999999999999999876553      233467899999999888899999999999999


Q ss_pred             HHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          156 LDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       156 ~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |+|++ |..||.........    ..+.. ......+..++.++.+++.+||..+|.+|||+.+++..|+
T Consensus       198 ~~l~~~g~~p~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         198 WEIFTLGATPYPGLSNEEVL----EYLRK-GYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             HHHHhcCCCCCCCCCHHHHH----HHHHc-CCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            99999 57776554221111    11111 2233456667889999999999999999999999998763

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.2e-34  Score=241.61  Aligned_cols=202  Identities=16%  Similarity=0.200  Sum_probs=170.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecC-CcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHC-LTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~-~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      -.+++.+|+++-+.++||||++.+..+-     .+++||.+ |.+...+.. ....+++.....++.|++.|+.|+|.+ 
T Consensus        65 v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k-  143 (281)
T KOG0580|consen   65 VEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK-  143 (281)
T ss_pred             chhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC-
Confidence            4678899999999999999999984333     45999998 555555543 456799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCC--CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD--GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||||+|+|++..+.+|++|||.+.....  +.+.|||.-|.+||...+...+...|+|++|++.||++.|.+||.
T Consensus       144 ~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFe  223 (281)
T KOG0580|consen  144 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFE  223 (281)
T ss_pred             CcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchh
Confidence            999999999999999999999999999887654  356799999999999999999999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ........    .++..  ..-.+|..++..+.++|.+|+.++|.+|.+..+++.+-+
T Consensus       224 s~~~~etY----krI~k--~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpw  275 (281)
T KOG0580|consen  224 SQSHSETY----KRIRK--VDLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPW  275 (281)
T ss_pred             hhhhHHHH----HHHHH--ccccCCcccChhHHHHHHHHhccCccccccHHHHhhhHH
Confidence            65433222    22221  123467888999999999999999999999999987644

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5.9e-33  Score=252.69  Aligned_cols=205  Identities=19%  Similarity=0.260  Sum_probs=161.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGET-QPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.|.+|+..+++++|||++.++..+.    ..||||+++ ++...+.... ..+++..+..++.|++.||.|||++ 
T Consensus        38 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-  116 (257)
T cd05040          38 DIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK-  116 (257)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC-
Confidence            34568999999999999999999884332    349999985 4555554433 5789999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      |++||||||+||+++.++.+||+|||+++......       ...++..|+|||++.+..++.++|||||||++|+|++ 
T Consensus       117 ~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~  196 (257)
T cd05040         117 RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTY  196 (257)
T ss_pred             CccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhC
Confidence            99999999999999999999999999988754421       2345678999999998889999999999999999998 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |..|+...........    +.........+...+..+.+++.+||+.+|.+|||+.++++.|.
T Consensus       197 g~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         197 GEEPWAGLSGSQILKK----IDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             CCCCCCCCCHHHHHHH----HHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            8888743221111111    11011112234556788999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.3e-33  Score=275.74  Aligned_cols=205  Identities=15%  Similarity=0.192  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++++++||||+.++....     .+|||++.+++...+......+++..++.++.||+.||.|||++ |||
T Consensus       204 ~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-gIv  282 (461)
T PHA03211        204 YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGE-GII  282 (461)
T ss_pred             ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CEE
Confidence            456789999999999999999884322     45999998887777765566899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.+..++.++|||||||++|||++|..++
T Consensus       283 HrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~l  362 (461)
T PHA03211        283 HRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASL  362 (461)
T ss_pred             ECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999998764322      1245899999999999888999999999999999999987654


Q ss_pred             Cchhh------------HHhhhcccc--ccc--------c-------ccccCCCC-------hHHHHHHHHHHHHhcccC
Q 015733          166 PSHAL------------DLIRDRNIQ--TLT--------D-------SCLEGQFS-------SDEGTELVRLASRCLQYE  209 (401)
Q Consensus       166 ~~~~~------------~~~~~~~~~--~~~--------~-------~~~~~~~~-------~~~~~~l~~li~~cl~~~  209 (401)
                      .....            .........  ...        .       ........       ...+..+.+||.+||+.|
T Consensus       363 f~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~D  442 (461)
T PHA03211        363 FSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFD  442 (461)
T ss_pred             ccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccC
Confidence            32110            000000000  000        0       00000000       023457889999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |.+|||+.|++++
T Consensus       443 P~~RPsa~elL~h  455 (461)
T PHA03211        443 GARRPSAAELLRL  455 (461)
T ss_pred             hhhCcCHHHHhhC
Confidence            9999999999875

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1e-33  Score=266.89  Aligned_cols=196  Identities=16%  Similarity=0.175  Sum_probs=154.4

Q ss_pred             HHHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+..|.. +++.++||||++++..+.     .+||||++|+.+........++++..+..++.||+.||.|||++ ||+
T Consensus        40 ~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~-giv  118 (325)
T cd05604          40 KHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSI-NIV  118 (325)
T ss_pred             HHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            45566654 467799999999884443     34999999765554444567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||++|..||..
T Consensus       119 H~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~  198 (325)
T cd05604         119 YRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYC  198 (325)
T ss_pred             ecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCC
Confidence            999999999999999999999999875322    2345689999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ............    .  ....++..+..+.+++.+||+.+|.+||++.+.+
T Consensus       199 ~~~~~~~~~~~~----~--~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         199 RDVAEMYDNILH----K--PLVLRPGASLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             CCHHHHHHHHHc----C--CccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCH
Confidence            432221111111    1  1123345677899999999999999999886433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.4e-33  Score=252.39  Aligned_cols=204  Identities=21%  Similarity=0.357  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+|..|+.++.+++|+|+++++....     ..||||+++ ++...+... ...+++..+..++.|++.||.|||+. 
T Consensus        43 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-  121 (256)
T cd05039          43 AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK-  121 (256)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3578999999999999999999884333     349999996 455544332 23799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCc-cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPP  166 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~  166 (401)
                      |++||||||+||+++.++.++|+|||.++....... ...+..|+|||.+.++.++.++||||||+++|++++ |..||.
T Consensus       122 ~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  201 (256)
T cd05039         122 NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             CccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999887644322 234567999999988889999999999999999997 888765


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ........     ..+........+...+..+.++|.+||+.+|.+|||+.+++..|+.
T Consensus       202 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         202 RIPLKDVV-----PHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             CCCHHHHH-----HHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence            43222111     1111112233455677889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=9e-33  Score=256.87  Aligned_cols=208  Identities=13%  Similarity=0.199  Sum_probs=157.8

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC----------CCCCCHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE----------TQPMKWAMRLRVALHIA   78 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~----------~~~l~~~~~~~i~~qi~   78 (401)
                      ....+|.+|+.++.+++|||++.++..+.     ..||||++++ +...+...          ...+++..++.++.|++
T Consensus        61 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  140 (296)
T cd05051          61 NAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIA  140 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999884333     3499999865 44333221          12689999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||.|||+. |++||||||+||+++.++.++|+|||+++......      ...+++.|+|||.+.++.++.++||||||
T Consensus       141 ~al~~LH~~-~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  219 (296)
T cd05051         141 SGMRYLESL-NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFG  219 (296)
T ss_pred             HHHHHHHHc-CccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhH
Confidence            999999999 99999999999999999999999999987643322      23346789999999888899999999999


Q ss_pred             HHHHHHHh--CCCCCCchhhHHhhhcccccc---ccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          153 TLLLDLLS--GKHIPPSHALDLIRDRNIQTL---TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       153 ~~l~el~t--g~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |++|||++  |..|+........... ....   .........+..++.++.+++.+||+.||.+|||+.+|++.|.
T Consensus       220 ~~l~el~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         220 VTLWEILTLCREQPYEHLTDQQVIEN-AGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHhcCCCCCCCCcChHHHHHH-HHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            99999998  4555543211111000 0000   0011111234456788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=8.1e-33  Score=261.82  Aligned_cols=208  Identities=17%  Similarity=0.273  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------CCCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------ETQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------~~~~l~~~~~~~i~   74 (401)
                      .++|..|+.++.++ +||||+.++..+.     ..+|||++++ +...+..               ....+++..+..++
T Consensus        61 ~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  140 (334)
T cd05100          61 LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCA  140 (334)
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHH
Confidence            46899999999999 8999999884333     3489999864 4444322               12358899999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .|++.||.|||++ |++||||||+||+++.++.+||+|||+++......      ...++..|+|||.+.+..++.++||
T Consensus       141 ~qi~~al~~LH~~-givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  219 (334)
T cd05100         141 YQVARGMEYLASQ-KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV  219 (334)
T ss_pred             HHHHHHHHHHHHC-CeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhh
Confidence            9999999999999 99999999999999999999999999987654322      1123467999999998889999999


Q ss_pred             hhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          149 YSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       149 ~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |||||++|||++ |..||..........     .+........+..++.++.+++.+||+.+|.+|||+.+++..|..+.
T Consensus       220 ~slG~il~el~~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~  294 (334)
T cd05100         220 WSFGVLLWEIFTLGGSPYPGIPVEELFK-----LLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL  294 (334)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCHHHHHH-----HHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence            999999999998 777765432221111     11111223345566788999999999999999999999999999887


Q ss_pred             cCC
Q 015733          228 KDT  230 (401)
Q Consensus       228 ~~~  230 (401)
                      ...
T Consensus       295 ~~~  297 (334)
T cd05100         295 TVT  297 (334)
T ss_pred             hhc
Confidence            543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=8.4e-33  Score=255.59  Aligned_cols=209  Identities=17%  Similarity=0.250  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.++.+++|||++.+.....       .+||||+++ ++...+......+++..+..++.|++.||.|||++ 
T Consensus        49 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~-  127 (284)
T cd05081          49 LRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSK-  127 (284)
T ss_pred             HHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            457899999999999999999874321       359999985 45555554456799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++||||||+||+++.++.+||+|||+++.......       ..++..|+|||++.+..++.++|||||||++|||++|
T Consensus       128 ~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~  207 (284)
T cd05081         128 RYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY  207 (284)
T ss_pred             CceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999887543321       1123469999999888899999999999999999998


Q ss_pred             CCCCCchhhHHhh---hcc--------ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHALDLIR---DRN--------IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..++.........   ...        .............+..++.++.+|+.+||+.+|++|||+.+|+..|+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         208 SDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             CCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            7654322111100   000        0011111112233456778899999999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.7e-33  Score=255.66  Aligned_cols=203  Identities=17%  Similarity=0.297  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccC---------CCCCCCHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG---------ETQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~---------~~~~l~~~~~~~i~~qi~~~   80 (401)
                      +...|.+|+.++..++|||+++++..+.     ..||||+++ ++...+..         ....+++..+..++.|++.|
T Consensus        52 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  131 (277)
T cd05032          52 ERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADG  131 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHH
Confidence            3467999999999999999999885433     349999985 44444432         12347899999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHH
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      |.|||+. +++||||||+||+++.++.+||+|||+++.....      ....++..|+|||.+.++.++.++|||||||+
T Consensus       132 l~~lH~~-~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  210 (277)
T cd05032         132 MAYLAAK-KFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVV  210 (277)
T ss_pred             HHHHHhC-CccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHH
Confidence            9999999 9999999999999999999999999998764332      12345678999999988889999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +||++| |..||..........    .+. .......|..++..+.+++.+||+.+|++|||+.+++..|+
T Consensus       211 l~el~t~g~~p~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         211 LWEMATLAEQPYQGLSNEEVLK----FVI-DGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             HHHhhccCCCCCccCCHHHHHH----HHh-cCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            999998 777765432221111    111 11122345667889999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-33  Score=257.81  Aligned_cols=203  Identities=15%  Similarity=0.206  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...|.+|+.++..++|||++.+...+.     .+||||++|+.+. .+.. ....+++..+..++.|++.||.|||+. |
T Consensus        44 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  122 (285)
T cd05605          44 EAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE-R  122 (285)
T ss_pred             HHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            356788999999999999999884433     3499999965443 3332 345799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ++||||||+||++++++.++|+|||++.......   ...|++.|+|||++.+..++.++||||+||++||+++|..||.
T Consensus       123 ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~  202 (285)
T cd05605         123 IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFR  202 (285)
T ss_pred             cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999988754332   3467899999999998889999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      +.............+ .. ....++...+..+.+||.+||+.||.+||     ++.+++.+
T Consensus       203 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         203 QRKEKVKREEVERRV-KE-DQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             CCchhhHHHHHHHHh-hh-cccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            543211111111111 11 12234556788899999999999999999     77788664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=4.6e-33  Score=268.12  Aligned_cols=204  Identities=16%  Similarity=0.121  Sum_probs=157.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...|..|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. ||
T Consensus        44 ~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~-gi  122 (381)
T cd05626          44 QVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKM-GF  122 (381)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            4567899999999999999999985444     34999999765544444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC-------------------------------------------------
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-------------------------------------------------  121 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-------------------------------------------------  121 (401)
                      +||||||+|||++.++.+||+|||+++....                                                 
T Consensus       123 vHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (381)
T cd05626         123 IHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQR  202 (381)
T ss_pred             eecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhccccccccc
Confidence            9999999999999999999999998753210                                                 


Q ss_pred             --CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHH
Q 015733          122 --GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELV  199 (401)
Q Consensus       122 --~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (401)
                        ..+..||+.|+|||++.+..++.++|||||||++|||+||..||...............  ......+....++.++.
T Consensus       203 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~  280 (381)
T cd05626         203 CLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINW--ENTLHIPPQVKLSPEAV  280 (381)
T ss_pred             cccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHcc--ccccCCCCCCCCCHHHH
Confidence              01246899999999999888999999999999999999999998654322111111100  00111111224678899


Q ss_pred             HHHHH--hcccCCCCCCCHHHHHHH
Q 015733          200 RLASR--CLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       200 ~li~~--cl~~~p~~Rps~~~vl~~  222 (401)
                      +||.+  |+..+|..||++.+++.+
T Consensus       281 dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         281 DLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             HHHHHHccCcccccCCCCHHHHhcC
Confidence            99988  556677779999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=3.3e-33  Score=263.63  Aligned_cols=196  Identities=15%  Similarity=0.176  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+..|+.++.++ +|||++.+..+++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ |++
T Consensus        40 ~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~-~iv  118 (327)
T cd05617          40 DWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHER-GII  118 (327)
T ss_pred             HHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            4578899999888 5899999885554     34999999765554444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||+||..||..
T Consensus       119 HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~  198 (327)
T cd05617         119 YRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  198 (327)
T ss_pred             ccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCc
Confidence            999999999999999999999999875321    2245689999999999988999999999999999999999999853


Q ss_pred             hhhHHh--hhc-cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          168 HALDLI--RDR-NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       168 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ......  ... ....+...  ...+|...+..+.+++.+||+.||.+|+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         199 ITDNPDMNTEDYLFQVILEK--PIRIPRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             cCCCcccccHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            211000  000 00111111  123566678889999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.1e-33  Score=253.22  Aligned_cols=200  Identities=22%  Similarity=0.283  Sum_probs=156.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec----cccEeeecCCccccccc-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF----QIPSYEFHCLTFSNNFS-GETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~----~~~v~Ey~~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++++++|||++.++...    ..+||||++++.+..+. .....+++..+..++.||+.||.|||++ |++
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~  123 (259)
T cd05037          45 SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDK-KLV  123 (259)
T ss_pred             HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC-Cee
Confidence            57899999999999999998887432    24599999976544443 3344799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCC-------CeEEecccCccccCCCCccccccccCCccccccC--ccCCCCcchhhHHHHHHHHhC-
Q 015733           92 YHDLNAYRIVFDDDV-------NPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTG--RVTPESVMYSFGTLLLDLLSG-  161 (401)
Q Consensus        92 H~dlk~~Nill~~~~-------~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Dv~slG~~l~el~tg-  161 (401)
                      ||||||+||+++.++       .+||+|||++..........++..|+|||++.+.  .++.++|||||||++|+|++| 
T Consensus       124 H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~  203 (259)
T cd05037         124 HGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNG  203 (259)
T ss_pred             cccCccceEEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence            999999999999888       7999999999886665556677889999999876  789999999999999999995 


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ..|+.........     ....  .....+......+.+++.+||+.+|.+|||+.+|++.|+
T Consensus       204 ~~p~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         204 EEPLSTLSSSEKE-----RFYQ--DQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             CCCcccCCchhHH-----HHHh--cCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            5554332111000     0000  011122222378999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=9.2e-33  Score=251.10  Aligned_cols=203  Identities=18%  Similarity=0.217  Sum_probs=163.1

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      .....+|..|+.++++++|||++.++..+.     ..||||++|+ +...+... ...+++..+..++.|++.||.|||+
T Consensus        40 ~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~  119 (256)
T cd08529          40 RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS  119 (256)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345788999999999999999999884433     4499999864 44444432 4679999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      . |++|+||||+||+++.++.++|+|||+++......    ...+++.|+|||++.+..++.++|||||||++|+|++|.
T Consensus       120 ~-~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  198 (256)
T cd08529         120 K-KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGK  198 (256)
T ss_pred             C-CcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCC
Confidence            9 99999999999999999999999999988654432    335788999999999888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||..............     .....++..++..+.+++.+||+.+|++||++.++++.
T Consensus       199 ~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         199 HPFDANNQGALILKIIR-----GVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             CCCCCCCHHHHHHHHHc-----CCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            99865432211111111     11223444677889999999999999999999999763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3.6e-33  Score=262.97  Aligned_cols=193  Identities=18%  Similarity=0.197  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|..++..+. |++++.+..++.     .+||||++|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        44 ~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  122 (323)
T cd05616          44 VECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSK-GI  122 (323)
T ss_pred             HHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            346777888887774 677776664443     35999999765544444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..++.++|||||||++|||+||..||.
T Consensus       123 vHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~  202 (323)
T cd05616         123 IYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE  202 (323)
T ss_pred             EecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875332    224568999999999999899999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ........    ..+...  ...+|...+.++.+++.+||+.+|.+|++.
T Consensus       203 ~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         203 GEDEDELF----QSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCCHHHHH----HHHHhC--CCCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence            54322111    111111  123566778899999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=8e-33  Score=250.77  Aligned_cols=202  Identities=21%  Similarity=0.323  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++.+++|||++.+.....     .+||||++++ +...+......+++..+..++.|++.||.|||+. |+
T Consensus        36 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~  114 (250)
T cd05085          36 KIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESK-NC  114 (250)
T ss_pred             HHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            357999999999999999988874333     3499999865 5444444456789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||+++.++.+||+|||++.......     ...+++.|+|||++.++.++.++||||||+++|++++ |..|
T Consensus       115 ~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p  194 (250)
T cd05085         115 IHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCP  194 (250)
T ss_pred             eecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999987644332     1233567999999998889999999999999999998 8888


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |...........     .........+..++..+.+++.+||+.+|.+|||+.++++.|.
T Consensus       195 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         195 YPGMTNQQAREQ-----VEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCCCCHHHHHHH-----HHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            754322211111     1112223345567889999999999999999999999998774

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.2e-32  Score=258.75  Aligned_cols=206  Identities=15%  Similarity=0.180  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..|.+|+.++++++|||++.+...+.     .+||||++|++...+.....++++..+..++.|++.||.|||+. |++|
T Consensus        70 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~-~i~H  148 (317)
T cd06635          70 QDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH-NMIH  148 (317)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cccc
Confidence            57889999999999999999885433     35999999887777765667899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |||+|+||+++.++.++|+|||++..........+++.|+|||.+.   .+.++.++|||||||++|+|++|..||....
T Consensus       149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  228 (317)
T cd06635         149 RDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  228 (317)
T ss_pred             CCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999999999999999999988776666677889999999974   3568899999999999999999999875432


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ....    ...+.........+...+..+.+++.+||+.+|.+||++.+++..+.....
T Consensus       229 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  283 (317)
T cd06635         229 AMSA----LYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRE  283 (317)
T ss_pred             HHHH----HHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhcc
Confidence            1110    111111111111233566789999999999999999999999987766554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-33  Score=268.42  Aligned_cols=202  Identities=14%  Similarity=0.086  Sum_probs=157.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+...+.+|+.++..++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. |
T Consensus        43 ~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~  121 (364)
T cd05599          43 EQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKL-G  121 (364)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34566888999999999999999885444     34999999765544444556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC------------------------------------------Ccccc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------------------------------------------RSYST  127 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------------------------------------------~~~~~  127 (401)
                      |+||||||+|||++.++.+||+|||++......                                          ....|
T Consensus       122 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (364)
T cd05599         122 YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVG  201 (364)
T ss_pred             eEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence            999999999999999999999999998753211                                          02358


Q ss_pred             ccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCC--hHHHHHHHHHHHHh
Q 015733          128 NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRC  205 (401)
Q Consensus       128 ~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~c  205 (401)
                      |+.|+|||++.+..++.++|||||||++|||++|..||...........    +........+|  ...+..+.++|.+|
T Consensus       202 t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~----i~~~~~~~~~~~~~~~s~~~~~li~~l  277 (364)
T cd05599         202 TPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRK----IINWKETLQFPDEVPLSPEAKDLIKRL  277 (364)
T ss_pred             CccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHH----HHcCCCccCCCCCCCCCHHHHHHHHHH
Confidence            9999999999988899999999999999999999999865432211111    11100011112  23577899999999


Q ss_pred             cccCCCCCCC---HHHHHHH
Q 015733          206 LQYEPRERPN---PRSLVTA  222 (401)
Q Consensus       206 l~~~p~~Rps---~~~vl~~  222 (401)
                      +. +|.+|++   +.+++.+
T Consensus       278 l~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         278 CC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             cc-CHhhcCCCCCHHHHhcC
Confidence            96 9999998   8888764

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=5.7e-33  Score=259.38  Aligned_cols=206  Identities=16%  Similarity=0.269  Sum_probs=161.5

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i~   74 (401)
                      ..++..|+.++..+ +||||+.+...+.     .+||||++++ +...+...               ...+++..+..++
T Consensus        64 ~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (304)
T cd05101          64 LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT  143 (304)
T ss_pred             HHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHH
Confidence            35789999999999 8999998874433     3599999864 44444321               2358899999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .||+.||.|||++ |++||||||+||+++.++.+||+|||+++......      ...+++.|+|||++.+..++.++||
T Consensus       144 ~qi~~al~~LH~~-givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  222 (304)
T cd05101         144 YQVARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV  222 (304)
T ss_pred             HHHHHHHHHHHHC-CeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhH
Confidence            9999999999999 99999999999999999999999999988754321      1234568999999988889999999


Q ss_pred             hhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          149 YSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       149 ~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||||+++|++++ |..|+..........     .+........+..++..+.+++.+||+.+|.+|||+.++++.|..+.
T Consensus       223 ~slG~~l~el~~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~  297 (304)
T cd05101         223 WSFGVLMWEIFTLGGSPYPGIPVEELFK-----LLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL  297 (304)
T ss_pred             HHHHHHHHHHHcCCCCCcccCCHHHHHH-----HHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence            999999999998 666665432221111     11111222345567889999999999999999999999999998875


Q ss_pred             c
Q 015733          228 K  228 (401)
Q Consensus       228 ~  228 (401)
                      .
T Consensus       298 ~  298 (304)
T cd05101         298 T  298 (304)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=8.3e-33  Score=255.39  Aligned_cols=203  Identities=16%  Similarity=0.147  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.+++.++|||++.+...+.     ..||||++++.+ ..+.....++++..+..++.|++.||.|||+. |+
T Consensus        46 ~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~-~i  124 (282)
T cd06643          46 LEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN-KI  124 (282)
T ss_pred             HHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            467899999999999999999874333     349999997644 44444467899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+||+++.++.+||+|||++......    ....+++.|+|||++.     +..++.++|||||||++|||++|
T Consensus       125 ~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g  204 (282)
T cd06643         125 IHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQI  204 (282)
T ss_pred             eecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccC
Confidence            99999999999999999999999998764332    2346789999999984     34578899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      +.||...............   .......+..++.++.++|.+||+.+|.+|||+.+++.+-
T Consensus       205 ~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         205 EPPHHELNPMRVLLKIAKS---EPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             CCCccccCHHHHHHHHhhc---CCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCC
Confidence            9887543211110010000   0011123445678899999999999999999999987643

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=6.9e-33  Score=254.12  Aligned_cols=206  Identities=15%  Similarity=0.211  Sum_probs=152.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC----CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE----TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~----~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...|.+|+.+++.++||||+.++..+.     .+||||++++ +...+...    ....++.....++.||+.||.|||+
T Consensus        39 ~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  118 (269)
T cd05042          39 QLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ  118 (269)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999999884333     3499999965 44444322    2335788889999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-------CccCCCCcchhhHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-------GRVTPESVMYSFGT  153 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~slG~  153 (401)
                      + ||+||||||+|||++.++.+||+|||++......      ....+++.|+|||++..       ..++.++|||||||
T Consensus       119 ~-~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~  197 (269)
T cd05042         119 A-DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGV  197 (269)
T ss_pred             c-CEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHH
Confidence            9 9999999999999999999999999998753322      12234667999998753       35688999999999


Q ss_pred             HHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          154 LLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       154 ~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ++|||++ |..||..................+......+...+..+.+++..|| .||++|||+.+|++.|.
T Consensus       198 ~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         198 TMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             HHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            9999999 5666544321111111111111111122344567788899999999 59999999999998773

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=7.9e-33  Score=253.72  Aligned_cols=206  Identities=17%  Similarity=0.213  Sum_probs=162.5

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+..+|..|+.++++++|||++++...+.     ..||||++++ +...+....+.+++..+..++.|++.||.|||+. 
T Consensus        47 ~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~-  125 (269)
T cd05065          47 KQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEM-  125 (269)
T ss_pred             HHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            34578999999999999999999884433     3499999865 5445544456789999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCc-------ccc--ccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YST--NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~--~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |++||||||+||+++.++.+||+|||++........       ..+  +..|++||.+.+..++.++|||||||++||++
T Consensus       126 g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l  205 (269)
T cd05065         126 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM  205 (269)
T ss_pred             CEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHh
Confidence            999999999999999999999999999876443211       111  34799999999888999999999999999988


Q ss_pred             h-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          160 S-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       160 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      + |..||............     ........+.+++..+.+++.+||..+|++||++.+|+..|+.+
T Consensus       206 ~~g~~p~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         206 SYGERPYWDMSNQDVINAI-----EQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             cCCCCCCCCCCHHHHHHHH-----HcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            6 88887543222111111     11122233456778899999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.5e-32  Score=251.35  Aligned_cols=208  Identities=16%  Similarity=0.207  Sum_probs=164.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS---GETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      +.+.+.+|+.++.+++|+|++.++..+.     ..||||++++ +...+.   .....+++..+..++.|++.||.|||+
T Consensus        45 ~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  124 (267)
T cd08224          45 ARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS  124 (267)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999884333     3499999964 444432   235668999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      . |++||||+|+||+++.++.++|+|||++......    ....+++.|+|||.+.+..++.++|||||||++|+|++|.
T Consensus       125 ~-~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~  203 (267)
T cd08224         125 K-RIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             C-CEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCC
Confidence            9 9999999999999999999999999998765432    2345788999999998888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCCh-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSS-DEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .||.........   .............+. ..+..+.++|.+||+.+|++|||+.+|++.|+.+.
T Consensus       204 ~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         204 SPFYGDKMNLYS---LCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             CCcccCCccHHH---HHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            987543211110   000001111122333 56778999999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.6e-32  Score=251.80  Aligned_cols=205  Identities=17%  Similarity=0.182  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC----CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG----ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..|.+|+.++++++|||+++++..+.     .+||||++++ +...+..    ....+++..+..++.|++.||+|||+.
T Consensus        40 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  119 (269)
T cd05087          40 MKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN  119 (269)
T ss_pred             HHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            47899999999999999999885443     3499999965 4444332    223567888899999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccC-------ccCCCCcchhhHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTG-------RVTPESVMYSFGTL  154 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~-------~~~~~~Dv~slG~~  154 (401)
                       |++||||||+||+++.++.+||+|||+++......      ...++..|+|||++...       .++.++||||||++
T Consensus       120 -~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~  198 (269)
T cd05087         120 -NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVT  198 (269)
T ss_pred             -CEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHH
Confidence             99999999999999999999999999987543321      23456789999998642       35789999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +|||++ |..||......................+......+..+.+++.+|| .+|++|||+.+|+..|+
T Consensus       199 l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         199 IWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             HHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            999996 8888754322111111111100111112222345677899999999 68999999999998774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.6e-32  Score=250.89  Aligned_cols=204  Identities=21%  Similarity=0.287  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .++|.+|+.++.+++|||++.++....    ..||||+++ ++...+.. ....+++..+..++.|++.||.|||+. ++
T Consensus        45 ~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i  123 (262)
T cd05071          45 PEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM-NY  123 (262)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            467999999999999999998874333    359999996 45555543 245689999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||++++++.++|+|||.++......     ...++..|++||...+..++.++||||||+++|+|+| |..|
T Consensus       124 ~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p  203 (262)
T cd05071         124 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP  203 (262)
T ss_pred             cccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999987654332     1234567999999988889999999999999999999 6667


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |............     ........+..++..+.+|+.+||+.+|.+|||+.++++.|+..
T Consensus       204 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         204 YPGMVNREVLDQV-----ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             CCCCChHHHHHHH-----hcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence            6543222111111     11111223456778899999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=5.9e-33  Score=257.07  Aligned_cols=204  Identities=11%  Similarity=0.133  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHhhh---CCCeEEEeeeecc----------ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASM---SSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        18 ~~f~~E~~~l~~~---~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ..+.+|+.++..+   +||||++++..+.          .+||||+++++...+... ...+++..+..++.|++.||.|
T Consensus        44 ~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~  123 (288)
T cd07863          44 LSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDF  123 (288)
T ss_pred             hHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567787777665   7999999884322          359999998776666543 3458999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||+. |++||||||+||+++.++.+||+|||+++.....   ....+++.|+|||++.+..++.++|||||||++|+|++
T Consensus       124 lH~~-~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~  202 (288)
T cd07863         124 LHAN-CIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR  202 (288)
T ss_pred             HHhC-CeecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHh
Confidence            9999 9999999999999999999999999998875433   23457889999999998889999999999999999999


Q ss_pred             CCCCCCchhhHHhhhcccc-----------c---ccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQ-----------T---LTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~-----------~---~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      |.+||..............           .   .......       ....+.++..+.+++.+||+.||.+|||+.++
T Consensus       203 g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~  282 (288)
T cd07863         203 RKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRA  282 (288)
T ss_pred             CCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHH
Confidence            9988754321110000000           0   0000000       01123456778999999999999999999998


Q ss_pred             HHH
Q 015733          220 VTA  222 (401)
Q Consensus       220 l~~  222 (401)
                      +.+
T Consensus       283 l~h  285 (288)
T cd07863         283 LQH  285 (288)
T ss_pred             hcC
Confidence            753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.1e-32  Score=258.80  Aligned_cols=207  Identities=20%  Similarity=0.281  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------CCCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------ETQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------~~~~l~~~~~~~i~   74 (401)
                      ..+|..|+.++.++ +||||+.++..+.     ..||||++++ +...+..               ....+++..+.+++
T Consensus        61 ~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  140 (314)
T cd05099          61 LADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCA  140 (314)
T ss_pred             HHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHH
Confidence            35688999999999 6999999884333     3499999865 4443322               12458999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .|++.||.|||++ |++||||||+||+++.++.+||+|||+++.......      ..++..|+|||.+.+..++.++||
T Consensus       141 ~qi~~aL~~lH~~-gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  219 (314)
T cd05099         141 YQVARGMEYLESR-RCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDV  219 (314)
T ss_pred             HHHHHHHHHHHHC-CeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchh
Confidence            9999999999999 999999999999999999999999999986543211      123467999999988889999999


Q ss_pred             hhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          149 YSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       149 ~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |||||++|+|++ |..||..........     ..........+..++.++.+++.+||+.+|.+|||+.+++..|..+.
T Consensus       220 wslG~~l~el~~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~  294 (314)
T cd05099         220 WSFGILMWEIFTLGGSPYPGIPVEELFK-----LLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL  294 (314)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCCHHHHHH-----HHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            999999999999 777765432111111     11111222345667788999999999999999999999999998876


Q ss_pred             cC
Q 015733          228 KD  229 (401)
Q Consensus       228 ~~  229 (401)
                      ..
T Consensus       295 ~~  296 (314)
T cd05099         295 AA  296 (314)
T ss_pred             HH
Confidence            53

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-32  Score=252.60  Aligned_cols=202  Identities=16%  Similarity=0.232  Sum_probs=168.1

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+..-+.++|+..++-++|||||+++...+     ++|+|+-++| +.+.+......+.++.+.+++.||+.|+.|+|+.
T Consensus        58 ~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqL  137 (864)
T KOG4717|consen   58 TLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQL  137 (864)
T ss_pred             hhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhh
Confidence            345567889999999999999999995444     4588988864 5555555677899999999999999999999999


Q ss_pred             CCceeccCCCCCEEEC-CCCCeEEecccCccccCCC---CccccccccCCccccccCccC-CCCcchhhHHHHHHHHhCC
Q 015733           88 ERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVT-PESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~-~~~Dv~slG~~l~el~tg~  162 (401)
                       .+|||||||+|+.+. .-|-+||.|||++..+.++   .+.||+..|-|||++.+..|+ ++.||||||||||-|++|+
T Consensus       138 -HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq  216 (864)
T KOG4717|consen  138 -HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQ  216 (864)
T ss_pred             -hhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCC
Confidence             999999999999876 4588999999999887766   467999999999999998775 5789999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||....    ..+.+..+++-..  ..|..++.++++||..||..||.+|.|.++|...
T Consensus       217 ~PFqeAN----DSETLTmImDCKY--tvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  217 PPFQEAN----DSETLTMIMDCKY--TVPSHVSKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             Ccccccc----chhhhhhhhcccc--cCchhhhHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence            9986532    2233334444332  4688999999999999999999999999999763

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.2e-32  Score=252.08  Aligned_cols=200  Identities=15%  Similarity=0.226  Sum_probs=161.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||+++++..+.     ..||||++++.+..+......+++..+..++.|++.||.|||+. |+
T Consensus        49 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~-~i  127 (267)
T cd06628          49 MLDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNR-GI  127 (267)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            3467889999999999999999884433     34999998765554444557799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      +||||+|+||++++++.++|+|||.++.....          ....++..|+|||.+.+..++.++|||||||++|+|++
T Consensus       128 vH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~  207 (267)
T cd06628         128 IHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT  207 (267)
T ss_pred             ccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhh
Confidence            99999999999999999999999998765421          12346789999999998889999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |..||.......    ....+.. ......+...+..+.++|.+||+.||.+||++.+|++
T Consensus       208 g~~p~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         208 GKHPFPDCTQLQ----AIFKIGE-NASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             CCCCCCCccHHH----HHHHHhc-cCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            999986532110    0111111 1223455667889999999999999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.3e-32  Score=254.38  Aligned_cols=210  Identities=15%  Similarity=0.244  Sum_probs=160.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccc-cccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSN-NFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~-~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ....|.+|+.++++++|||++.+.....       .+||||++|+.+. .+......+++..+..++.|++.||+|||++
T Consensus        49 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~  128 (284)
T cd05079          49 HIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSR  128 (284)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            3467999999999999999998874322       3599999865444 4434445789999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       |++||||||+||+++.++.++|+|||+++......       ...++..|+|||.+.+..++.++|||||||++|||+|
T Consensus       129 -gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt  207 (284)
T cd05079         129 -QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLT  207 (284)
T ss_pred             -CeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhc
Confidence             99999999999999999999999999988654321       2345678999999988889999999999999999999


Q ss_pred             CCCCCCchhhHHhh-------hcc---ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          161 GKHIPPSHALDLIR-------DRN---IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       161 g~~p~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      +..|..........       ...   ...........+.+..++..+.+|+.+||+.+|.+|||+.+++..|+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         208 YCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             CCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            87654321110000       000   0001111112233456788999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-32  Score=248.94  Aligned_cols=203  Identities=22%  Similarity=0.308  Sum_probs=161.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|..|+.++.+++||||+.++..+.     ..||||++|+ +...+......+++..+..++.+++.||.|||++ +
T Consensus        35 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~  113 (251)
T cd05041          35 LKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESK-N  113 (251)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4578999999999999999998873332     3499999865 5555544456789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ++||||+|+||+++.++.++|+|||++........      ...+..|+|||.+.++.++.++|||||||++|+|+| |.
T Consensus       114 i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~  193 (251)
T cd05041         114 CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGD  193 (251)
T ss_pred             EehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999886543221      122457999999988889999999999999999999 67


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .||...........     .........+...+..+.+++.+||..+|.+|||+.++++.|.
T Consensus       194 ~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         194 TPYPGMSNQQTRER-----IESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             CCCccCCHHHHHHH-----HhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            67654432211111     1111122345567789999999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=4.3e-33  Score=267.04  Aligned_cols=201  Identities=15%  Similarity=0.131  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++..++||||+.+...+.     .+||||++|+.+..+.. ...+++..+..++.||+.||+|||++ ||+
T Consensus        87 ~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~-~~~l~~~~~~~~~~qi~~aL~~LH~~-~iv  164 (370)
T cd05596          87 SAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS-NYDIPEKWARFYTAEVVLALDAIHSM-GFI  164 (370)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            455788999999999999999885443     34999999764444432 34688999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC----ccCCCCcchhhHHHHHHHHhCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG----RVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~----~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ||||||+|||++.++.+||+|||++......     ....||+.|+|||++.+.    .++.++|||||||++|||++|.
T Consensus       165 HrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~  244 (370)
T cd05596         165 HRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGD  244 (370)
T ss_pred             ccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCC
Confidence            9999999999999999999999998765432     235689999999998753    4789999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCCh--HHHHHHHHHHHHhcccCCCC--CCCHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSS--DEGTELVRLASRCLQYEPRE--RPNPRSLVTAL  223 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~l  223 (401)
                      .||.........    ..+........+|.  .++.++.++|.+||+.+|.+  |+|+.+++.+-
T Consensus       245 ~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~  305 (370)
T cd05596         245 TPFYADSLVGTY----SKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHP  305 (370)
T ss_pred             CCcCCCCHHHHH----HHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCc
Confidence            998765332111    11111111112232  46789999999999999988  99999998753

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.2e-32  Score=254.08  Aligned_cols=203  Identities=17%  Similarity=0.250  Sum_probs=158.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+|.+|+.++.+++|||++.++..+.     .+||||++++.+..+    ..+++..+..++.|++.||.|||+. |+
T Consensus        42 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~-~i  116 (279)
T cd06619          42 LQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVY----RKIPEHVLGRIAVAVVKGLTYLWSL-KI  116 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHh----hcCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            3467999999999999999999884433     349999998765543    3478999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      +|+||||+||+++.++.++|+|||++......  ....++..|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       117 ~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  196 (279)
T cd06619         117 LHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQI  196 (279)
T ss_pred             eeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhh
Confidence            99999999999999999999999998765433  3456889999999999888999999999999999999999987542


Q ss_pred             hhHH---hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          169 ALDL---IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       169 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ....   ........+.............+.++.++|.+||+.+|.+||++.+++...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~  254 (279)
T cd06619         197 QKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHP  254 (279)
T ss_pred             cccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCc
Confidence            1100   000001111111111111233567899999999999999999999998753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.1e-32  Score=251.58  Aligned_cols=203  Identities=19%  Similarity=0.285  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++..|+.++..++|||++.++....     ..||||+++ ++...+.. ....+++..+..++.|++.||.|||+. |
T Consensus        46 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~  124 (261)
T cd05148          46 QQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ-N  124 (261)
T ss_pred             HHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            457889999999999999998774332     349999996 55555543 345789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      ++||||+|+||++++++.+||+|||++.......    ...++..|++||.+.+..++.++||||||+++|+|++ |..|
T Consensus       125 i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p  204 (261)
T cd05148         125 SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVP  204 (261)
T ss_pred             eeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999987654332    2234568999999988889999999999999999998 7777


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |........    ... .........+..++..+.++|.+||+.+|.+|||+.++++.|+.
T Consensus       205 ~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         205 YPGMNNHEV----YDQ-ITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             CCcCCHHHH----HHH-HHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence            754321111    111 11222334456778899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=2e-32  Score=251.06  Aligned_cols=206  Identities=14%  Similarity=0.169  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+.|.+|+.++..++|||+++++..+.     .+||||++++ +...+...   ...+++..+..++.||+.||.|||+.
T Consensus        39 ~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  118 (268)
T cd05086          39 QNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH  118 (268)
T ss_pred             HHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            468999999999999999999885433     4499999965 44444322   24567778889999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCC------CCccccccccCCcccccc-------CccCCCCcchhhHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD------GRSYSTNLAFTPPEYLRT-------GRVTPESVMYSFGTL  154 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~slG~~  154 (401)
                       +++||||||+|||++.++.++|+|||++.....      .....++..|+|||++..       ..++.++|||||||+
T Consensus       119 -~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~  197 (268)
T cd05086         119 -NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVT  197 (268)
T ss_pred             -CeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHH
Confidence             999999999999999999999999999764321      123457789999998753       245789999999999


Q ss_pred             HHHHHhCC-CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          155 LLDLLSGK-HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       155 l~el~tg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +|||+++. .|+...............-......+..+...+..+.+++..|| .+|++|||+.+|++.|.
T Consensus       198 l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         198 LWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            99999864 45433211111111111100111122334456778899999999 67999999999998774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=6.4e-33  Score=267.33  Aligned_cols=204  Identities=15%  Similarity=0.094  Sum_probs=155.7

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+...+..|+.++.+++||||+.++..++     .+||||++|+.+..+..+.+.+++..+..++.||+.||.|||++ |
T Consensus        43 ~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~-~  121 (382)
T cd05625          43 NQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKM-G  121 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            34567889999999999999999985554     44999999764444444456789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC------------------------------------------------
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD------------------------------------------------  121 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~------------------------------------------------  121 (401)
                      |+||||||+|||++.++.+||+|||++.....                                                
T Consensus       122 ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (382)
T cd05625         122 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQ  201 (382)
T ss_pred             eecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            99999999999999999999999999753210                                                


Q ss_pred             ---CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHH
Q 015733          122 ---GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTEL  198 (401)
Q Consensus       122 ---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  198 (401)
                         ..+..||+.|+|||++.+..++.++|||||||++|||++|..||...............  ......+.....++++
T Consensus       202 ~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~--~~~~~~p~~~~~s~~~  279 (382)
T cd05625         202 RCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINW--QTSLHIPPQAKLSPEA  279 (382)
T ss_pred             cccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHcc--CCCcCCCCcccCCHHH
Confidence               01235889999999999888999999999999999999999998754321111111100  0111111123467788


Q ss_pred             HHHHHHhcccCCCCCCC---HHHHHHH
Q 015733          199 VRLASRCLQYEPRERPN---PRSLVTA  222 (401)
Q Consensus       199 ~~li~~cl~~~p~~Rps---~~~vl~~  222 (401)
                      .++|.+|+ .+|.+|++   +.+++.+
T Consensus       280 ~~li~~l~-~~p~~R~~~~~~~ei~~h  305 (382)
T cd05625         280 SDLIIKLC-RGPEDRLGKNGADEIKAH  305 (382)
T ss_pred             HHHHHHHc-cCHhHcCCCCCHHHHhcC
Confidence            99998876 59999987   7777653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=9e-33  Score=259.57  Aligned_cols=205  Identities=14%  Similarity=0.212  Sum_probs=150.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccC--------CCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSG--------ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~--------~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.+|+.++++++||||+.+...+.       ..||||+++++...+..        ....+++..+..++.||+.||
T Consensus        42 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al  121 (317)
T cd07868          42 SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGI  121 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHH
Confidence            456889999999999999999874331       34899998876554421        224689999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEE----CCCCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCcch
Q 015733           82 EYCTSKERALYHDLNAYRIVF----DDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESVMY  149 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~  149 (401)
                      .|||++ ||+||||||+|||+    +.++.+||+|||+++.....       ....+|+.|+|||++.+ ..++.++|||
T Consensus       122 ~~LH~~-~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  200 (317)
T cd07868         122 HYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIW  200 (317)
T ss_pred             HHHHhC-CEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHH
Confidence            999999 99999999999999    45678999999999865432       23467899999999887 4589999999


Q ss_pred             hhHHHHHHHHhCCCCCCchhhHHhh---------hc--------------cccc------cccccccC------------
Q 015733          150 SFGTLLLDLLSGKHIPPSHALDLIR---------DR--------------NIQT------LTDSCLEG------------  188 (401)
Q Consensus       150 slG~~l~el~tg~~p~~~~~~~~~~---------~~--------------~~~~------~~~~~~~~------------  188 (401)
                      |+||++|+|++|+.||.........         ..              ....      ........            
T Consensus       201 slG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (317)
T cd07868         201 AIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYME  280 (317)
T ss_pred             HHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHH
Confidence            9999999999999988532110000         00              0000      00000000            


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......+..+.+||.+||+.||.+|||+++++++
T Consensus       281 ~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~h  314 (317)
T cd07868         281 KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  314 (317)
T ss_pred             hcCCCCChHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0001123467899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-32  Score=252.78  Aligned_cols=208  Identities=14%  Similarity=0.177  Sum_probs=165.7

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+|.+|+..+.+++|||++.+.....    ..||||+++ .+...+......+++..+..++.|++.||+|||+. |
T Consensus        51 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~  129 (279)
T cd05057          51 KANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEK-R  129 (279)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            34578999999999999999888873322    349999985 45555555566799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ++||||||+||++++++.+||+|||+++.......      ..++..|++||.+....++.++||||||+++||+++ |.
T Consensus       130 i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~  209 (279)
T cd05057         130 LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGA  209 (279)
T ss_pred             EEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999987553321      112467999999988889999999999999999998 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .||..........     .+........+..++..+.+++.+||..+|+.|||+.+++..|..+.+
T Consensus       210 ~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05057         210 KPYEGIPAVEIPD-----LLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMAR  270 (279)
T ss_pred             CCCCCCCHHHHHH-----HHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            8876543222111     111111223345567789999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=5e-33  Score=260.37  Aligned_cols=205  Identities=16%  Similarity=0.253  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++++++|||++.+...+.     .+||||+++++...+......+++..+..++.|++.||.|||++ ||+
T Consensus        48 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~iv  126 (309)
T cd07872          48 PCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR-KVL  126 (309)
T ss_pred             chhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            456889999999999999999885443     34999999888777766666789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.+||+|||++......    ....+++.|+|||.+.+ ..++.++|||||||++|+|+||+.||.
T Consensus       127 H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  206 (309)
T cd07872         127 HRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFP  206 (309)
T ss_pred             cCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998764322    23456889999999875 468899999999999999999999986


Q ss_pred             chhhHHhhhccc-----------ccc------c---cccccC----CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNI-----------QTL------T---DSCLEG----QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~-----------~~~------~---~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............           ..+      .   .+....    .....++.++.++|.+||+.||.+|||+.+++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         207 GSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             CCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence            542211100000           000      0   000000    0112356788999999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.7e-32  Score=251.69  Aligned_cols=208  Identities=18%  Similarity=0.251  Sum_probs=165.0

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.|.+|+.++++++|||++.++....    ..||||+++ ++...+......+++..+..++.|++.||.|||+. |
T Consensus        49 ~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~  127 (270)
T cd05056          49 SVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESK-R  127 (270)
T ss_pred             HHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            35678999999999999999999884333    349999985 45555544455689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.++|+|||+++.......     ..++..|+|||.+....++.++||||||+++||+++ |..
T Consensus       128 ~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  207 (270)
T cd05056         128 FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVK  207 (270)
T ss_pred             eeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999876543321     223467999999988889999999999999999986 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||...........     .........+..++..+.++|.+||..+|++|||+.+++..|..+..
T Consensus       208 pf~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         208 PFQGVKNNDVIGR-----IENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             CCCCCCHHHHHHH-----HHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            8755422111110     01111223456678899999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-33  Score=268.12  Aligned_cols=200  Identities=15%  Similarity=0.082  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+....+.+++..+..++.|++.||+|||+. ||+
T Consensus        45 ~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~-giv  123 (377)
T cd05629          45 LAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKL-GFI  123 (377)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            456888999999999999999885444     34999998765444444557799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-------------------------------------------------
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------------------------------------------------  122 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  122 (401)
                      ||||||+|||++.++.+||+|||+++.....                                                 
T Consensus       124 HrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T cd05629         124 HRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRL  203 (377)
T ss_pred             ccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence            9999999999999999999999998632110                                                 


Q ss_pred             --CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCCh--HHHHHH
Q 015733          123 --RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSS--DEGTEL  198 (401)
Q Consensus       123 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l  198 (401)
                        ....||+.|+|||++.+..++.++|||||||++|||+||..||..........    .+........+|.  ..+.++
T Consensus       204 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~----~i~~~~~~~~~p~~~~~s~~~  279 (377)
T cd05629         204 MAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYR----KIINWRETLYFPDDIHLSVEA  279 (377)
T ss_pred             cccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHH----HHHccCCccCCCCCCCCCHHH
Confidence              02358899999999998889999999999999999999999986543211111    1111000111222  357789


Q ss_pred             HHHHHHhcccCCCCC---CCHHHHHHH
Q 015733          199 VRLASRCLQYEPRER---PNPRSLVTA  222 (401)
Q Consensus       199 ~~li~~cl~~~p~~R---ps~~~vl~~  222 (401)
                      .++|.+||. +|.+|   +|+.+++.+
T Consensus       280 ~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         280 EDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             HHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            999999997 67765   599998875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.2e-32  Score=257.60  Aligned_cols=206  Identities=18%  Similarity=0.280  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRVA   74 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i~   74 (401)
                      ..++..|+.++..+ +|||++.+...+.     .+||||++++ +...+...               ...+++..+++++
T Consensus        67 ~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  146 (307)
T cd05098          67 LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCA  146 (307)
T ss_pred             HHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHH
Confidence            35788999999999 7999999884333     3499999864 44444321               1358999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .|++.||+|||+. |++||||||+||+++.++.+||+|||+++......      ...+++.|+|||.+.+..++.++||
T Consensus       147 ~qi~~aL~~lH~~-gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  225 (307)
T cd05098         147 YQVARGMEYLASK-KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDV  225 (307)
T ss_pred             HHHHHHHHHHHHC-CcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHH
Confidence            9999999999999 99999999999999999999999999987654321      1123468999999988889999999


Q ss_pred             hhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          149 YSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       149 ~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |||||++|||++ |..||.........     ..+........+...+.++.+|+.+||..+|.+|||+.+|+..|..+.
T Consensus       226 wslG~~l~el~~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~  300 (307)
T cd05098         226 WSFGVLLWEIFTLGGSPYPGVPVEELF-----KLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  300 (307)
T ss_pred             HHHHHHHHHHHcCCCCCCCcCCHHHHH-----HHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence            999999999998 66776543221111     111112223455667889999999999999999999999999998875


Q ss_pred             c
Q 015733          228 K  228 (401)
Q Consensus       228 ~  228 (401)
                      .
T Consensus       301 ~  301 (307)
T cd05098         301 A  301 (307)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=2.1e-32  Score=249.60  Aligned_cols=204  Identities=20%  Similarity=0.269  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++++++|||++.++....    ..||||+.++ +...+.. ....+++..+..++.|++.||+|||+. |
T Consensus        44 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~-~  122 (260)
T cd05067          44 SPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK-N  122 (260)
T ss_pred             cHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC-C
Confidence            3578999999999999999999884433    3499999854 5444433 345789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||++++++.++|+|||++.......     ...++..|+|||++.+..++.++||||||+++||+++ |..
T Consensus       123 i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~  202 (260)
T cd05067         123 YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRI  202 (260)
T ss_pred             eecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999987655221     2234568999999998889999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||..........     ..........+...+.++.+++.+||+.+|++|||++++...|+.
T Consensus       203 p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         203 PYPGMTNPEVIQ-----NLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             CCCCCChHHHHH-----HHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            875432211111     111112223445567789999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.7e-32  Score=249.31  Aligned_cols=204  Identities=21%  Similarity=0.337  Sum_probs=161.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++..++|||++.+...+.    ..||||+++ ++...+... ...+++..+..++.|++.||.|||+. |
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~  120 (254)
T cd05083          42 TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK-K  120 (254)
T ss_pred             hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4568999999999999999999884333    349999986 455554433 34689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPS  167 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~  167 (401)
                      ++||||||+||+++.++.+||+|||++...... .....+..|+|||.+.++.++.++|||||||++|+|++ |..||..
T Consensus       121 ~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  200 (254)
T cd05083         121 LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK  200 (254)
T ss_pred             eeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999999999999998765433 22334568999999988889999999999999999998 8877755


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ........     ..........+..++..+.+++.+||+.+|.+||++.+++..|+.
T Consensus       201 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         201 MSLKEVKE-----CVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             CCHHHHHH-----HHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            43221111     111122223345667889999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.3e-33  Score=263.62  Aligned_cols=206  Identities=12%  Similarity=0.182  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...+..|+.++.+++||||++++..+.     .+||||+.+++...+.....++++..+..++.||+.||.|||++ ||
T Consensus       100 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~i  178 (357)
T PHA03209        100 QKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQ-RI  178 (357)
T ss_pred             CccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4456678999999999999999874332     44999999888877776677899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|||+++..++..
T Consensus       179 vHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~  258 (357)
T PHA03209        179 IHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFE  258 (357)
T ss_pred             ecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcccc
Confidence            99999999999999999999999998754322   234689999999999988899999999999999999997655422


Q ss_pred             hhh----HHh--hhccccccc------ccccc-------------------CCC-------ChHHHHHHHHHHHHhcccC
Q 015733          168 HAL----DLI--RDRNIQTLT------DSCLE-------------------GQF-------SSDEGTELVRLASRCLQYE  209 (401)
Q Consensus       168 ~~~----~~~--~~~~~~~~~------~~~~~-------------------~~~-------~~~~~~~l~~li~~cl~~~  209 (401)
                      ...    ...  ....+..++      ...+.                   ..+       ....+.++.+||.+||+.|
T Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d  338 (357)
T PHA03209        259 DPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFD  338 (357)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCC
Confidence            100    000  000000000      00000                   000       0123556778999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |.+|||+.+++.+
T Consensus       339 P~~Rpta~e~l~h  351 (357)
T PHA03209        339 AAMRPSAEEILNY  351 (357)
T ss_pred             cccCcCHHHHhcC
Confidence            9999999999874

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4.8e-33  Score=267.64  Aligned_cols=203  Identities=15%  Similarity=0.106  Sum_probs=156.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||+|||++ ||
T Consensus        44 ~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i  122 (376)
T cd05598          44 QAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKM-GF  122 (376)
T ss_pred             hHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3567889999999999999999885444     34999999765444444556789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC-----------------------------------------------CC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-----------------------------------------------GR  123 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-----------------------------------------------~~  123 (401)
                      +||||||+|||++.++.+||+|||++.....                                               ..
T Consensus       123 vHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (376)
T cd05598         123 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAH  202 (376)
T ss_pred             EeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhccccccc
Confidence            9999999999999999999999999742210                                               01


Q ss_pred             ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHH
Q 015733          124 SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLAS  203 (401)
Q Consensus       124 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  203 (401)
                      ...||+.|+|||++.+..++.++|||||||++|||++|..||..............  ............++..+.++|.
T Consensus       203 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~s~~~~~li~  280 (376)
T cd05598         203 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVIN--WETTLHIPSQAKLSREASDLIL  280 (376)
T ss_pred             ccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhc--cCccccCCCCCCCCHHHHHHHH
Confidence            24689999999999988899999999999999999999999876432211111100  0001111122346778899999


Q ss_pred             HhcccCCCCCC---CHHHHHHH
Q 015733          204 RCLQYEPRERP---NPRSLVTA  222 (401)
Q Consensus       204 ~cl~~~p~~Rp---s~~~vl~~  222 (401)
                      +|+ .+|.+|+   |+.+++.+
T Consensus       281 ~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         281 RLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             HHh-cCHhhcCCCCCHHHHhCC
Confidence            977 5999999   88998865

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=4.5e-33  Score=257.33  Aligned_cols=206  Identities=14%  Similarity=0.166  Sum_probs=158.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.++++++|||++.+...+.     ..|+||+++++...+......+++..+..++.||+.||.|||++ |+
T Consensus        42 ~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~i  120 (284)
T cd07839          42 VPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH-NV  120 (284)
T ss_pred             CccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            3467889999999999999999884433     34999999888777765567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+||+++.++.+||+|||+++.....    ....+++.|+|||++.+. .++.++|||||||++|+|+||+.|+
T Consensus       121 ~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~  200 (284)
T cd07839         121 LHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  200 (284)
T ss_pred             ecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999998865432    123467899999998764 4789999999999999999999886


Q ss_pred             CchhhH-Hhhhc--------------ccccccccccc---------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          166 PSHALD-LIRDR--------------NIQTLTDSCLE---------GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       166 ~~~~~~-~~~~~--------------~~~~~~~~~~~---------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ...... .....              ....+.+....         ....+..+.++.++|.+||+.||.+|||+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         201 FPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             cCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            432110 00000              00000000000         0112335678999999999999999999999976


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      +
T Consensus       281 h  281 (284)
T cd07839         281 H  281 (284)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=3.2e-32  Score=249.60  Aligned_cols=203  Identities=17%  Similarity=0.233  Sum_probs=159.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC------CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG------ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~------~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ....|.+|+.+++.++||||+.++..+.     ..||||++|+ +...+..      ....+++..+..++.|++.||.|
T Consensus        42 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  121 (269)
T cd05044          42 EKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVY  121 (269)
T ss_pred             hHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999884333     3499999864 4444432      22458899999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCC-----CeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDV-----NPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~-----~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      ||+. +++|+||||+||+++.++     .++|+|||++.......      ...++..|+|||.+.++.++.++||||||
T Consensus       122 lH~~-~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  200 (269)
T cd05044         122 LEQM-HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFG  200 (269)
T ss_pred             HHhC-CcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHH
Confidence            9999 999999999999999887     89999999987643321      22346789999999988999999999999


Q ss_pred             HHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          153 TLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       153 ~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |++|+|+| |..||.........     ..+........+...+..+.++|.+||..+|.+||++.+|++.|.
T Consensus       201 ~il~ellt~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         201 VLMWEILTLGQQPYPALNNQEVL-----QHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHHHHHHcCCCCCcccCHHHHH-----HHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            99999998 88887543211111     111111122345567888999999999999999999999998875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=2e-32  Score=256.20  Aligned_cols=208  Identities=16%  Similarity=0.228  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..++.+|+.++.+++||||++++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||+..+++
T Consensus        43 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~  122 (308)
T cd06615          43 RNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIM  122 (308)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEE
Confidence            457899999999999999999884443     349999997655555445577999999999999999999999843899


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      ||||||+|||++.++.+||+|||++......  ....++..|+|||.+.+..++.++|||||||++|+|+||..||....
T Consensus       123 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~  202 (308)
T cd06615         123 HRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD  202 (308)
T ss_pred             ECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999999999999999999998764332  34567899999999988889999999999999999999999875432


Q ss_pred             hHHhhh---cccccc-------------------------ccc---cccCCCC-hHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          170 LDLIRD---RNIQTL-------------------------TDS---CLEGQFS-SDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       170 ~~~~~~---~~~~~~-------------------------~~~---~~~~~~~-~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      ......   ......                         .+.   ...+..| ...+.++.+++.+||..+|++|||+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  282 (308)
T cd06615         203 AKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLK  282 (308)
T ss_pred             hhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHH
Confidence            111000   000000                         000   0001111 12567799999999999999999999


Q ss_pred             HHHHHHH
Q 015733          218 SLVTALV  224 (401)
Q Consensus       218 ~vl~~l~  224 (401)
                      +|+....
T Consensus       283 ~ll~~~~  289 (308)
T cd06615         283 ELTKHPF  289 (308)
T ss_pred             HHhcChh
Confidence            9988654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1e-32  Score=266.52  Aligned_cols=205  Identities=15%  Similarity=0.211  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+.+|+.++++++||||++++..+.     .+||||+.+++...+ .....+++..++.++.||+.||.|||++ ||+|
T Consensus       131 ~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l-~~~~~l~~~~~~~i~~ql~~aL~~LH~~-givH  208 (392)
T PHA03207        131 KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYKCDLFTYV-DRSGPLPLEQAITIQRRLLEALAYLHGR-GIIH  208 (392)
T ss_pred             ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcCCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cccc
Confidence            45678999999999999999874333     448999988776666 4557899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |||||+|||++.++.++|+|||+++.....      ....||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus       209 rDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~  288 (392)
T PHA03207        209 RDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLF  288 (392)
T ss_pred             cCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            999999999999999999999998764432      13468999999999998889999999999999999999999986


Q ss_pred             chhhHH--------hhhcc-----c-----ccc------ccccccCCC--C-----hHHHHHHHHHHHHhcccCCCCCCC
Q 015733          167 SHALDL--------IRDRN-----I-----QTL------TDSCLEGQF--S-----SDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       167 ~~~~~~--------~~~~~-----~-----~~~------~~~~~~~~~--~-----~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      +.....        .....     .     ..+      .....+..+  +     ...+.++.++|.+||..||.+|||
T Consensus       289 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rps  368 (392)
T PHA03207        289 GKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPS  368 (392)
T ss_pred             CCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCC
Confidence            532100        00000     0     000      000001111  1     123567889999999999999999


Q ss_pred             HHHHHHHHH
Q 015733          216 PRSLVTALV  224 (401)
Q Consensus       216 ~~~vl~~l~  224 (401)
                      +.+++.+-.
T Consensus       369 a~e~l~~p~  377 (392)
T PHA03207        369 AQDILSLPL  377 (392)
T ss_pred             HHHHhhCch
Confidence            999988643

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.4e-32  Score=253.56  Aligned_cols=209  Identities=17%  Similarity=0.245  Sum_probs=162.7

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCCc-ccccccCC-------CCCCCHHHHHHHHHHHHH
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCLT-FSNNFSGE-------TQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~~-l~~~~~~~-------~~~l~~~~~~~i~~qi~~   79 (401)
                      ..+...+.+|+.++.+++|||++.+... ..     ..++||++++ +...+...       ...+++..+..++.|++.
T Consensus        49 ~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~  128 (280)
T cd05043          49 EIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIAC  128 (280)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHH
Confidence            3456789999999999999998887732 22     3389999854 44443321       156899999999999999


Q ss_pred             HHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHH
Q 015733           80 ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        80 ~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      ||+|||+. +++||||||+||++++++.+||+|||+++......      ...++..|+|||++.+..++.++|||||||
T Consensus       129 ~l~~LH~~-~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~  207 (280)
T cd05043         129 GMSYLHKR-GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGV  207 (280)
T ss_pred             HHHHHHHC-CEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHH
Confidence            99999999 99999999999999999999999999998653321      223467899999998888999999999999


Q ss_pred             HHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          154 LLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       154 ~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ++||+++ |..||..........     ..........+..++..+.+++.+||..+|++|||+.+++..|..+.+
T Consensus       208 ~l~el~~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         208 LLWELMTLGQTPYVEIDPFEMAA-----YLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             HHHHHhcCCCCCcCcCCHHHHHH-----HHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            9999999 888875432211111     111111222334567789999999999999999999999999987754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-33  Score=261.07  Aligned_cols=209  Identities=17%  Similarity=0.220  Sum_probs=164.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-eecc----ccEeeecCCcccccccCC-CCC-CCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FMFQ----IPSYEFHCLTFSNNFSGE-TQP-MKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~~~----~~v~Ey~~~~l~~~~~~~-~~~-l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.+|..|+++|.+++||||+.+. .|.+    ..|+|||++|.++.+... ..+ +..+...+|+.||++||+||.+. 
T Consensus       578 ~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~-  656 (807)
T KOG1094|consen  578 ARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL-  656 (807)
T ss_pred             HHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh-
Confidence            468999999999999999988887 3333    339999997655555433 222 46677889999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCccc------cccccCCccccccCccCCCCcchhhHHHHHHHHh--
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS------TNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS--  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t--  160 (401)
                      ++|||||.++|+|++.++++||+|||.++....+..+.      -...|||+|.+.-+++|.+||||+||+++||+++  
T Consensus       657 nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C  736 (807)
T KOG1094|consen  657 NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLC  736 (807)
T ss_pred             chhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999877665432      3579999999999999999999999999999875  


Q ss_pred             CCCCCCchhhHHhhhcccccccccc---ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSC---LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ...|+..-..+... .+...+.+..   .....|.-|+..+.++|.+||+.+-.+|||++++...|...
T Consensus       737 ~e~Py~~lt~e~vv-en~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  737 REQPYSQLTDEQVV-ENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             hhCchhhhhHHHHH-HhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            45676543322221 2222222211   11234677899999999999999999999999999888654

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-32  Score=253.82  Aligned_cols=208  Identities=14%  Similarity=0.184  Sum_probs=156.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-----------CCCCCHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-----------TQPMKWAMRLRVALHIA   78 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-----------~~~l~~~~~~~i~~qi~   78 (401)
                      ....|.+|+.++.+++|||++.++..+.     .+||||++++ +...+...           ...+++..+..++.|++
T Consensus        60 ~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  139 (295)
T cd05097          60 ARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIA  139 (295)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHH
Confidence            3467999999999999999998884433     3499999965 43333211           12478999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||.|||+. |++||||||+||++++++.+||+|||++.......      ...++..|+|||.+.++.++.++||||||
T Consensus       140 ~al~~lH~~-~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG  218 (295)
T cd05097         140 SGMKYLASL-NFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFG  218 (295)
T ss_pred             HHHHHHHhc-CeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHH
Confidence            999999999 99999999999999999999999999987644322      12335689999999888899999999999


Q ss_pred             HHHHHHHhC--CCCCCchhhHHhhhcccc--ccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          153 TLLLDLLSG--KHIPPSHALDLIRDRNIQ--TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       153 ~~l~el~tg--~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |++|+|+++  ..||..............  ...........+...+..+.+|+.+||+.+|++|||+.+|++.|.
T Consensus       219 ~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         219 VTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            999999984  455543221111100000  000011112234456788999999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.6e-32  Score=257.84  Aligned_cols=204  Identities=13%  Similarity=0.205  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccC--------CCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSG--------ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~--------~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.+|+.++.+++|||++.+...+.       .+||||+++++...+..        ....+++..+..++.||+.||
T Consensus        42 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL  121 (317)
T cd07867          42 SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGI  121 (317)
T ss_pred             cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHH
Confidence            357889999999999999998874331       34899999876555421        234689999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEE----CCCCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCcch
Q 015733           82 EYCTSKERALYHDLNAYRIVF----DDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESVMY  149 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~  149 (401)
                      .|||+. |++||||||+|||+    +.++.+||+|||+++.....       ....+|+.|+|||++.+ ..++.++|||
T Consensus       122 ~~lH~~-~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  200 (317)
T cd07867         122 HYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIW  200 (317)
T ss_pred             HHHHhC-CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHH
Confidence            999999 99999999999999    56678999999999865432       22356889999999876 4589999999


Q ss_pred             hhHHHHHHHHhCCCCCCchhhHHhhh--------------------cccc---------cccccccc------------C
Q 015733          150 SFGTLLLDLLSGKHIPPSHALDLIRD--------------------RNIQ---------TLTDSCLE------------G  188 (401)
Q Consensus       150 slG~~l~el~tg~~p~~~~~~~~~~~--------------------~~~~---------~~~~~~~~------------~  188 (401)
                      ||||++|||+||..||.....+....                    ....         ........            .
T Consensus       201 SlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (317)
T cd07867         201 AIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYME  280 (317)
T ss_pred             hHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhh
Confidence            99999999999999875321110000                    0000         00000000            0


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .........+.+|+.+||+.||.+|||+.+++.
T Consensus       281 ~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~  313 (317)
T cd07867         281 KHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQ  313 (317)
T ss_pred             cccCCCChHHHHHHHHHhccCcccccCHHHHhc
Confidence            001122456889999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.4e-32  Score=253.82  Aligned_cols=210  Identities=19%  Similarity=0.269  Sum_probs=163.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      +.++|..|+.++..++|||++++.....       .+||||+++ ++...+......+++..+..++.|++.||.|||+.
T Consensus        49 ~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~  128 (284)
T cd05038          49 HRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ  128 (284)
T ss_pred             HHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            4578999999999999999998873322       359999985 45555554455799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       |++|+||||+||+++.++.++|+|||.+........       ..++..|++||.+.+..++.++||||||+++|||+|
T Consensus       129 -~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~t  207 (284)
T cd05038         129 -RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFT  207 (284)
T ss_pred             -CeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeec
Confidence             999999999999999999999999999887653211       123456999999988889999999999999999999


Q ss_pred             CCCCCCchhhHHhh----------hccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          161 GKHIPPSHALDLIR----------DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       161 g~~p~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |..|+.........          ................+..++.++.+|+.+||+.+|.+|||+.+|++.|..+
T Consensus       208 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         208 YGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             cCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            99886542211100          0001111111122233455678899999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=2.1e-32  Score=254.55  Aligned_cols=201  Identities=14%  Similarity=0.170  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.+++.++|||++.+...+.     .+||||++|+.+..+.. ...+++.++..++.|++.||.|||+. |++
T Consensus        61 ~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~i~~ql~~aL~~LH~~-gi~  138 (296)
T cd06654          61 KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVCRECLQALEFLHSN-QVI  138 (296)
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            467889999999999999999884432     44999999754444432 34689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+..++.++|||||||++|+|++|+.||..
T Consensus       139 H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~  218 (296)
T cd06654         139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLN  218 (296)
T ss_pred             cCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999988764332    234678899999999888889999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......   .............+...+..+.+++.+||..+|.+|||+.+++..
T Consensus       219 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         219 ENPLRAL---YLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             CCHHHhH---HHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence            4221100   000011111112345567889999999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.5e-32  Score=250.13  Aligned_cols=205  Identities=17%  Similarity=0.215  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|..|+.++.+++|||+++++..+.     .+||||++|+ +...+......+++.++..++.|++.||.|||+. |
T Consensus        48 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~  126 (267)
T cd05066          48 QRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDM-G  126 (267)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3468999999999999999999884433     3499999865 5555544456789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc-------cccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-------YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      ++||||||+||+++.++.++|+|||++........       ..++..|++||.+.+..++.++||||||+++||+++ |
T Consensus       127 i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g  206 (267)
T cd05066         127 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYG  206 (267)
T ss_pred             EeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999887543321       112457999999998889999999999999999886 8


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..||..........    .+. .....+.+..++..+.+++.+||+.+|.+|||+.++++.|..+
T Consensus       207 ~~p~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         207 ERPYWEMSNQDVIK----AIE-EGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             CCCcccCCHHHHHH----HHh-CCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            88875432211111    111 1112233445678899999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.98  E-value=1.9e-32  Score=250.85  Aligned_cols=201  Identities=15%  Similarity=0.183  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+.+|+.++.+++|||++.++..+.     ..||||++++.+..+.....++++..+..++.|++.||.|||+. |++|
T Consensus        51 ~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H  129 (267)
T cd06646          51 SLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSK-GKMH  129 (267)
T ss_pred             HHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cccc
Confidence            46778999999999999999884332     34999999754443333456799999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||+|+||+++.++.++|+|||++......    ....+++.|+|||.+.   ...++.++|||||||++|||++|+.|+
T Consensus       130 ~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~  209 (267)
T cd06646         130 RDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPM  209 (267)
T ss_pred             cCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999998865332    2345788999999885   345788999999999999999999887


Q ss_pred             CchhhHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ......    .....+.......   ..+...+..+.++|.+||+.+|.+|||+++|++.|
T Consensus       210 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         210 FDLHPM----RALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             cccchh----hhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            532211    0001111111111   11234567899999999999999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=1.5e-32  Score=248.90  Aligned_cols=208  Identities=15%  Similarity=0.151  Sum_probs=165.5

Q ss_pred             ccchhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC--CCCCCCHHHHHHHHHHHHHHH
Q 015733            9 TCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG--ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus         9 ~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      .++-.|..-.+..-|-.||+.++||.+..++..++     .+|||||+|+.++.+..  .++.++++.+..++.+|+.||
T Consensus       113 ~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~AL  192 (459)
T KOG0610|consen  113 ESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLAL  192 (459)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHH
Confidence            33333444455666889999999999999995555     45999999886666554  356799999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccC------------------------------------C----
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR------------------------------------D----  121 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~------------------------------------~----  121 (401)
                      +|||-. |||.|||||+||||.++|++-|+||.++....                                    .    
T Consensus       193 EYLHml-GivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k  271 (459)
T KOG0610|consen  193 EYLHML-GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKK  271 (459)
T ss_pred             HHHHhh-ceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhcccccccc
Confidence            999999 99999999999999999999999998854310                                    0    


Q ss_pred             --------------------CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccccc
Q 015733          122 --------------------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTL  181 (401)
Q Consensus       122 --------------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~  181 (401)
                                          +.++.||..|+|||++.+...+.+.|.|+|||++|||+.|..||-+....    ..+..+
T Consensus       272 ~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~----~Tl~NI  347 (459)
T KOG0610|consen  272 KDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNK----ETLRNI  347 (459)
T ss_pred             ccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCch----hhHHHH
Confidence                                01234688999999999999999999999999999999999999876433    333444


Q ss_pred             ccccccCCCChHHHHHHHHHHHHhcccCCCCCCC----HHHHHH
Q 015733          182 TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN----PRSLVT  221 (401)
Q Consensus       182 ~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps----~~~vl~  221 (401)
                      +...+.-.-.+..+..+++||+++|.+||.+|..    +.||.+
T Consensus       348 v~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  348 VGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             hcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhc
Confidence            4333332223367889999999999999999987    788865

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.98  E-value=4.7e-32  Score=252.22  Aligned_cols=207  Identities=14%  Similarity=0.216  Sum_probs=156.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC----------CCCCCHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE----------TQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~----------~~~l~~~~~~~i~~qi~~   79 (401)
                      ...+|.+|+.++..++|||++.++..+.     ..||||++++ +...+...          ...+++..+..++.|++.
T Consensus        62 ~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  141 (296)
T cd05095          62 ARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIAS  141 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHH
Confidence            3468999999999999999998884433     3499999864 44443321          134788999999999999


Q ss_pred             HHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHH
Q 015733           80 ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        80 ~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      ||.|||+. |++||||||+||+++.++.++|+|||+++......      ...+++.|++||...++.++.++|||||||
T Consensus       142 al~~lH~~-~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  220 (296)
T cd05095         142 GMKYLSSL-NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGV  220 (296)
T ss_pred             HHHHHHHC-CeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHH
Confidence            99999999 99999999999999999999999999987653322      122356899999988888999999999999


Q ss_pred             HHHHHHh--CCCCCCchhhHHhhhcccccccc---ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          154 LLLDLLS--GKHIPPSHALDLIRDRNIQTLTD---SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       154 ~l~el~t--g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ++|||+|  |..||........... ......   .......+..++..+.+|+.+||+.||.+|||+.+|.+.|.
T Consensus       221 ~l~el~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         221 TLWEILTLCKEQPYSQLSDEQVIEN-TGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHHhCCCCCccccChHHHHHH-HHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            9999998  5566543221111100 000000   00111224456788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.98  E-value=1.3e-32  Score=263.54  Aligned_cols=202  Identities=15%  Similarity=0.128  Sum_probs=156.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++..++||||++++..+.     .+||||++|+.+..+.. ...+++..+..++.||+.||+|||++ ||
T Consensus        86 ~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~-~~~~~~~~~~~~~~qil~aL~~LH~~-~I  163 (370)
T cd05621          86 DSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMS-NYDVPEKWAKFYTAEVVLALDAIHSM-GL  163 (370)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3456888999999999999999985444     34999999654443332 34589999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC----ccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG----RVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~----~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+|||++.++.+||+|||++......     ....||+.|+|||++.+.    .++.++||||+||++|||++|
T Consensus       164 vHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G  243 (370)
T cd05621         164 IHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVG  243 (370)
T ss_pred             EecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhC
Confidence            99999999999999999999999999875432     245689999999998753    378899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCCh--HHHHHHHHHHHHhcccCCCC--CCCHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSS--DEGTELVRLASRCLQYEPRE--RPNPRSLVTAL  223 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~l  223 (401)
                      ..||........    ...+........+|.  ..+..+.+++..||..++.+  |+|+.+++++-
T Consensus       244 ~~Pf~~~~~~~~----~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp  305 (370)
T cd05621         244 DTPFYADSLVGT----YSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHP  305 (370)
T ss_pred             CCCCCCCCHHHH----HHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCc
Confidence            999876432211    112222111122333  45788999999999865543  88999998853

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.98  E-value=8.1e-33  Score=265.67  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+.+|+.+++.++||||+.++..+          ...||||+.+++...+. ....+++..+..++.||+.||.|||+
T Consensus        43 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~  121 (372)
T cd07853          43 CKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQSDLHKIIV-SPQPLSSDHVKVFLYQILRGLKYLHS  121 (372)
T ss_pred             HHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccccCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            35788999999999999999887332          13499999887666554 44679999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHh
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~t  160 (401)
                      . |++||||||+|||++.++.+||+|||+++.....     ....+++.|+|||.+.+. .++.++|||||||++|||++
T Consensus       122 ~-~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~  200 (372)
T cd07853         122 A-GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLG  200 (372)
T ss_pred             C-CeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHc
Confidence            9 9999999999999999999999999998864332     223568899999998874 47899999999999999999


Q ss_pred             CCCCCCchhhHHhhhcc-------------------cccccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          161 GKHIPPSHALDLIRDRN-------------------IQTLTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~-------------------~~~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      |+.||............                   ...+......       .......+.++.+||.+||+.||.+||
T Consensus       201 g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~  280 (372)
T cd07853         201 RRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRI  280 (372)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCc
Confidence            99998643211000000                   0000000000       012233467899999999999999999


Q ss_pred             CHHHHHHHH
Q 015733          215 NPRSLVTAL  223 (401)
Q Consensus       215 s~~~vl~~l  223 (401)
                      |+.+++.+-
T Consensus       281 t~~e~l~hp  289 (372)
T cd07853         281 SAADALAHP  289 (372)
T ss_pred             CHHHHhcCH
Confidence            999998753

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.98  E-value=3.6e-32  Score=247.23  Aligned_cols=201  Identities=15%  Similarity=0.171  Sum_probs=160.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .++|.+|+.++++++|||++.+...+.     ..++||++++ +...+......+++..+..++.|++.||.|||+. ++
T Consensus        42 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~-~i  120 (256)
T cd06612          42 LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN-KK  120 (256)
T ss_pred             HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            578999999999999999999885443     3499999965 4444444567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +|+||+|+||+++.++.++|+|||++.......    ...++..|++||.+.+..++.++||||||+++|+|++|..||.
T Consensus       121 ~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~  200 (256)
T cd06612         121 IHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYS  200 (256)
T ss_pred             ccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999988755432    2346889999999998889999999999999999999999875


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .......... ...  ........+...+..+.+++.+||+.+|++|||+.+|+.
T Consensus       201 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         201 DIHPMRAIFM-IPN--KPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             Ccchhhhhhh-hcc--CCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            4321110000 000  000111224456678999999999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.98  E-value=5.9e-33  Score=262.35  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=157.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|..|+.++..++||||+.+...+.     .+||||++|+ +...+......+++..+..++.||+.||.|||+. |
T Consensus        44 ~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~  122 (330)
T cd05601          44 TVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQM-G  122 (330)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4466888999999999999998874433     3499999865 5555544447899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccc------cCccCCCCcchhhHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLR------TGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~------~~~~~~~~Dv~slG~~l~el  158 (401)
                      |+||||||+|||++.++.+||+|||++.......     ...||+.|+|||++.      ...++.++|||||||++|||
T Consensus       123 i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el  202 (330)
T cd05601         123 YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEM  202 (330)
T ss_pred             eEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeee
Confidence            9999999999999999999999999998754332     235789999999987      35678999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ++|..||...............  ......+.....+..+.+|+..||. +|.+|||+.+++.+
T Consensus       203 ~~g~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         203 IYGRSPFHEGTSAKTYNNIMNF--QRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             ccCCCCCCCCCHHHHHHHHHcC--CCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            9999998654322111111100  0001111123467889999999998 99999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.98  E-value=1e-32  Score=263.80  Aligned_cols=200  Identities=13%  Similarity=0.086  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...+..|+.++.+++|||++.++..++     .+||||++|+.+..+......+++..+..++.|++.||+|||++ ||
T Consensus        44 ~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~-gi  122 (360)
T cd05627          44 QVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQL-GF  122 (360)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3456788999999999999999885444     44999999765554444567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---------------------------------------Ccccccccc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---------------------------------------RSYSTNLAF  131 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---------------------------------------~~~~~~~~y  131 (401)
                      +||||||+|||++.++.+||+|||+++.....                                       ....||+.|
T Consensus       123 vHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  202 (360)
T cd05627         123 IHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDY  202 (360)
T ss_pred             EccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccc
Confidence            99999999999999999999999998643211                                       124689999


Q ss_pred             CCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCCh--HHHHHHHHHHHHhcccC
Q 015733          132 TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSS--DEGTELVRLASRCLQYE  209 (401)
Q Consensus       132 ~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~~~  209 (401)
                      +|||++.+..++.++|||||||++|||+||..||...........    +........+|.  ..+.++.++|.+|+. |
T Consensus       203 ~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~----i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~  277 (360)
T cd05627         203 IAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRK----VMNWKETLVFPPEVPISEKAKDLILRFCT-D  277 (360)
T ss_pred             cCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHH----HHcCCCceecCCCCCCCHHHHHHHHHhcc-C
Confidence            999999988999999999999999999999999866432221111    111000111222  256789999998774 9


Q ss_pred             CCCCCC---HHHHHH
Q 015733          210 PRERPN---PRSLVT  221 (401)
Q Consensus       210 p~~Rps---~~~vl~  221 (401)
                      |.+|++   +.+++.
T Consensus       278 p~~R~~~~~~~ei~~  292 (360)
T cd05627         278 SENRIGSNGVEEIKS  292 (360)
T ss_pred             hhhcCCCCCHHHHhc
Confidence            999985   566655

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.98  E-value=1.6e-32  Score=258.55  Aligned_cols=193  Identities=16%  Similarity=0.201  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHHhhhCCC-eEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSF-ILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~-niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|+.++..+.|+ +++.+..+++     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |+
T Consensus        44 ~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~-~i  122 (323)
T cd05615          44 VECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRR-GI  122 (323)
T ss_pred             HHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            35688899999888765 5555554333     34999999765554544556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|+||..||.
T Consensus       123 vHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~  202 (323)
T cd05615         123 IYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFD  202 (323)
T ss_pred             eccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCC
Confidence            99999999999999999999999998764322    23468999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ........    ..+...  ...+|...+.++.+++.+||+.+|.+|++.
T Consensus       203 ~~~~~~~~----~~i~~~--~~~~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         203 GEDEDELF----QSIMEH--NVSYPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             CCCHHHHH----HHHHhC--CCCCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence            54322111    111111  123456678889999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.98  E-value=2.7e-32  Score=249.76  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+.+|+.++.+++|||++.++..+.       .++|||++++.+..+......+++..+..++.|++.||.|||+. +
T Consensus        48 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~-~  126 (266)
T cd06651          48 VSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSN-M  126 (266)
T ss_pred             HHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            457889999999999999999884432       23899998654443333445689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++||||+|+||+++.++.++|+|||++......       ....++..|+|||.+.+..++.++|||||||++|||++|+
T Consensus       127 i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~  206 (266)
T cd06651         127 IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEK  206 (266)
T ss_pred             eeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCC
Confidence            999999999999999999999999998754321       1234788999999998888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .||.......    .............++...+..+.+++ +||..+|++||++.+|+.
T Consensus       207 ~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         207 PPWAEYEAMA----AIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             CCccccchHH----HHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            9875432111    11111111122345566777888888 688899999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.98  E-value=2.6e-32  Score=252.87  Aligned_cols=203  Identities=18%  Similarity=0.279  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------------CCCCCCHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------------ETQPMKWAM   69 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------------~~~~l~~~~   69 (401)
                      ..+|.+|+.++.+++|||++.++....     ..||||++++ +...+..                     ....+++..
T Consensus        52 ~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (288)
T cd05050          52 QADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTE  131 (288)
T ss_pred             HHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHH
Confidence            467999999999999999998884333     3499999964 4444321                     123588999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccC
Q 015733           70 RLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVT  143 (401)
Q Consensus        70 ~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~  143 (401)
                      ++.++.|++.||.|||+. +++||||||+||+++.++.++|+|||++.......      ....+..|+|||.+.+..++
T Consensus       132 ~~~~~~~i~~aL~~lH~~-~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  210 (288)
T cd05050         132 QLCIAKQVAAGMAYLSER-KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYT  210 (288)
T ss_pred             HHHHHHHHHHHHHHHHhC-CeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCC
Confidence            999999999999999999 99999999999999999999999999987643321      12335679999999888899


Q ss_pred             CCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          144 PESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       144 ~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .++|||||||++|||++ |..||.+.......    ..+.. ......+...+.++.+++.+||+.+|.+|||+.++++.
T Consensus       211 ~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~  285 (288)
T cd05050         211 TESDVWAYGVVLWEIFSYGMQPYYGMAHEEVI----YYVRD-GNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRI  285 (288)
T ss_pred             chhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH----HHHhc-CCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence            99999999999999998 76676543221111    11111 11112345567889999999999999999999999998


Q ss_pred             HHc
Q 015733          223 LVT  225 (401)
Q Consensus       223 l~~  225 (401)
                      |++
T Consensus       286 l~~  288 (288)
T cd05050         286 LQR  288 (288)
T ss_pred             hhC
Confidence            863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.98  E-value=5.2e-32  Score=246.33  Aligned_cols=202  Identities=17%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      +..+|.+|+.++++++|+|++.++..+.     ..||||++++ +...+... ...+++..+..++.|++.||.|||+. 
T Consensus        42 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-  120 (256)
T cd08221          42 ERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA-  120 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            4567899999999999999999984444     3389999965 44444433 45689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |++|+||+|+||+++.++.+||+|||++.......    ...+++.|+|||.+.+..++.++||||||+++|+|++|..|
T Consensus       121 ~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~  200 (256)
T cd08221         121 GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRT  200 (256)
T ss_pred             CccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999988754432    34578999999999888889999999999999999999998


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |..........    .+.... ....+...+.++.+++.+||..+|.+|||+.+++..+
T Consensus       201 ~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         201 FDATNPLNLVV----KIVQGN-YTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             CCCCCHHHHHH----HHHcCC-CCCCccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            76532211111    111111 1123355678899999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.98  E-value=2.8e-32  Score=252.14  Aligned_cols=205  Identities=16%  Similarity=0.263  Sum_probs=158.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++|||++.+...+.     ..||||++++++..+......+++..+..++.|++.||.|||+. |++
T Consensus        44 ~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~-~i~  122 (286)
T cd07847          44 KKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKH-NCI  122 (286)
T ss_pred             cHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence            356889999999999999999885443     34999999887776665566799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.++|+|||++.......    ...++..|+|||.+.+ ..++.++|||||||++|+|++|..||.
T Consensus       123 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~  202 (286)
T cd07847         123 HRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWP  202 (286)
T ss_pred             ecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999988765433    3456789999999876 457899999999999999999998886


Q ss_pred             chhhHHh--h-hccccc-----------------cccccccCC-----CChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          167 SHALDLI--R-DRNIQT-----------------LTDSCLEGQ-----FSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       167 ~~~~~~~--~-~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      +......  . ......                 ...+.....     .....+..+.+|+.+||+.+|++|||+.+++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         203 GKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            4321100  0 000000                 000000000     01234678999999999999999999999875


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      +
T Consensus       283 ~  283 (286)
T cd07847         283 H  283 (286)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.8e-32  Score=249.25  Aligned_cols=206  Identities=18%  Similarity=0.196  Sum_probs=169.1

Q ss_pred             ccchhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC--CCCCCCHHHHHHHHHHHHHHH
Q 015733            9 TCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG--ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus         9 ~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ++-.+|....--++|-.++.+++.+.||.+-+.++     .+|+..|+||.+...+.  .+..++++.++.++.+|+.||
T Consensus       221 KRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGL  300 (591)
T KOG0986|consen  221 KRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGL  300 (591)
T ss_pred             HHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhH
Confidence            34445566667788999999999999988876665     34999999887666554  345899999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                      ++||.. +||.||+||+|||+|+.|+++|+|+|+|.....+.   ...||.+|||||++..+.|+...|.||+||+||||
T Consensus       301 ehlH~~-~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYem  379 (591)
T KOG0986|consen  301 EHLHRR-RIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEM  379 (591)
T ss_pred             HHHHhc-ceeeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHH
Confidence            999999 99999999999999999999999999999987764   34789999999999999999999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      +.|+.||.........+..-+.+...  ...++...++++.+|....|++||.+|...+
T Consensus       380 i~G~sPFr~~KeKvk~eEvdrr~~~~--~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  380 IAGHSPFRQRKEKVKREEVDRRTLED--PEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             HcccCchhhhhhhhhHHHHHHHHhcc--hhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence            99999987653322221211111111  2356788899999999999999999997654

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.98  E-value=4.4e-32  Score=243.22  Aligned_cols=206  Identities=15%  Similarity=0.189  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHHhhhCCCe-EEEeeeecc-----------ccEeeecCCcccccccCCC---CCCCHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFI-LLAVIFMFQ-----------IPSYEFHCLTFSNNFSGET---QPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~n-iv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~---~~l~~~~~~~i~~qi~~~   80 (401)
                      -+.--++|+.+++.++|+| |+.+.....           .+||||++-.+...+....   ..++...+..++.||+.|
T Consensus        53 ~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~g  132 (323)
T KOG0594|consen   53 VPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRG  132 (323)
T ss_pred             CCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHH
Confidence            3455689999999999999 888883222           2499999977766665543   468889999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC-C---CccccccccCCccccccC-ccCCCCcchhhHHHH
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-G---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLL  155 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l  155 (401)
                      |+|||++ +|+||||||.||||+++|.+||+|||+|+...- .   +...+|..|.|||++.+. .|++..||||+|||+
T Consensus       133 l~~~H~~-~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIf  211 (323)
T KOG0594|consen  133 LAFLHSH-GILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIF  211 (323)
T ss_pred             HHHHHhC-CeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHH
Confidence            9999999 999999999999999999999999999997552 2   344678999999999986 699999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhh-----------ccccccc-----cccccCCC-ChH-------HHHHHHHHHHHhcccCCC
Q 015733          156 LDLLSGKHIPPSHALDLIRD-----------RNIQTLT-----DSCLEGQF-SSD-------EGTELVRLASRCLQYEPR  211 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~-~~~-------~~~~l~~li~~cl~~~p~  211 (401)
                      .||++++..|++......-.           ..+..+.     +....... +..       ...+..+++.+||+.+|.
T Consensus       212 aEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~  291 (323)
T KOG0594|consen  212 AEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPA  291 (323)
T ss_pred             HHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcc
Confidence            99999998887643211100           0111100     00000000 111       124789999999999999


Q ss_pred             CCCCHHHHHHH
Q 015733          212 ERPNPRSLVTA  222 (401)
Q Consensus       212 ~Rps~~~vl~~  222 (401)
                      +|.|+..++.+
T Consensus       292 ~R~Sa~~al~h  302 (323)
T KOG0594|consen  292 KRISAKGALTH  302 (323)
T ss_pred             cCcCHHHHhcC
Confidence            99999999875

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.98  E-value=4.1e-32  Score=261.84  Aligned_cols=158  Identities=19%  Similarity=0.284  Sum_probs=127.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccc
Q 015733           64 PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYL  137 (401)
Q Consensus        64 ~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~  137 (401)
                      .+++..++.++.||+.||.|||+. +++||||||+|||+++++.+||+|||+++.....      ....+++.|+|||.+
T Consensus       235 ~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  313 (401)
T cd05107         235 ALSYMDLVGFSYQVANGMEFLASK-NCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI  313 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcC-CcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHh
Confidence            478888999999999999999999 9999999999999999999999999998764321      123456789999999


Q ss_pred             ccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          138 RTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       138 ~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      .+..++.++|||||||++|||++ |+.||........    ....+........|..++.++.+|+.+||..+|.+||++
T Consensus       314 ~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~  389 (401)
T cd05107         314 FNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ----FYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDF  389 (401)
T ss_pred             cCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCH
Confidence            98889999999999999999998 7777654221110    111111222334456678899999999999999999999


Q ss_pred             HHHHHHHHcc
Q 015733          217 RSLVTALVTL  226 (401)
Q Consensus       217 ~~vl~~l~~~  226 (401)
                      .+|+..|+.+
T Consensus       390 ~ell~~L~~~  399 (401)
T cd05107         390 SQLVHLVGDL  399 (401)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.98  E-value=4.5e-32  Score=253.79  Aligned_cols=204  Identities=15%  Similarity=0.143  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+|..|+.+++.++|+|++.+...+.     .+||||+.|++...+.....++++..+..++.|++.||.|||+. +++|
T Consensus        60 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H  138 (308)
T cd06634          60 QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH-NMIH  138 (308)
T ss_pred             HHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence            56889999999999999888774322     34999999887776665567799999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |||+|+||+++.++.++|+|||++..........+++.|+|||.+.   .+.++.++|||||||++|+|++|..|+....
T Consensus       139 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  218 (308)
T cd06634         139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (308)
T ss_pred             CCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999988776666677889999999975   3567889999999999999999998875432


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      .....    ..+.........+...+..+.+||.+||+.+|.+||++.+++......
T Consensus       219 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~  271 (308)
T cd06634         219 AMSAL----YHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL  271 (308)
T ss_pred             HHHHH----HHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcccc
Confidence            11100    011111111112335677899999999999999999999998765433

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=6.5e-33  Score=264.56  Aligned_cols=202  Identities=14%  Similarity=0.196  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeeccc-----cEeeecCCc-ccccccCCCCCC--CHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQI-----PSYEFHCLT-FSNNFSGETQPM--KWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~~-----~v~Ey~~~~-l~~~~~~~~~~l--~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ......||.+-++++|.|||++.+++.-     ..||-++|| +..++...=+|+  .+.+.-.+..||+.||.|||++ 
T Consensus       616 ~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen-  694 (1226)
T KOG4279|consen  616 VQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN-  694 (1226)
T ss_pred             hccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc-
Confidence            3456789999999999999999855442     278999976 455555555778  7889999999999999999999 


Q ss_pred             CceeccCCCCCEEEC-CCCCeEEecccCccc----cCCCCccccccccCCccccccCc--cCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFD-DDVNPRLSCFGLMKN----SRDGRSYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~----~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~tg  161 (401)
                      .|||||||-+|+|++ -.|.+||+|||-++.    .+-+.++.||..|||||++..++  |+.++|||||||++.||.||
T Consensus       695 ~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATG  774 (1226)
T KOG4279|consen  695 KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATG  774 (1226)
T ss_pred             ceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccC
Confidence            999999999999996 568899999997665    34456889999999999998764  89999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ++||..-..+...   .-++---...+++|.+.+.+...+|.+|+.+||.+|||+.+++..
T Consensus       775 rPPF~ElgspqAA---MFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  775 RPPFVELGSPQAA---MFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             CCCeeecCChhHh---hhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence            9998653221100   001111112457899999999999999999999999999999873

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=2.5e-33  Score=283.74  Aligned_cols=211  Identities=12%  Similarity=0.097  Sum_probs=170.3

Q ss_pred             hccchhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 015733            8 NTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus         8 ~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      +-|.--+-.....-+|..++..++|||+|++++...     ..-||||.||.+..+...++..++.....+..|++.|+.
T Consensus      1269 ~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla 1348 (1509)
T KOG4645|consen 1269 KIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLA 1348 (1509)
T ss_pred             hcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            333333455667788999999999999999995433     237999998766666666677888888889999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccCc---cCCCCcchhh
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTGR---VTPESVMYSF  151 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~~---~~~~~Dv~sl  151 (401)
                      |||+. |||||||||.||+++.+|.+|++|||.|+......        ...||+.|||||++.+.+   ...++||||+
T Consensus      1349 ~LH~~-gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWsl 1427 (1509)
T KOG4645|consen 1349 YLHEH-GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSL 1427 (1509)
T ss_pred             HHHhc-CceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcc
Confidence            99999 99999999999999999999999999998865542        356899999999998743   5678999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |||+.||+||+.|+..-..    +-.+.--+.-...+++|..++.+-.+++.+||..||.+|+++.++++.-
T Consensus      1428 GCVVlEM~tGkrPW~~~dn----e~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~ 1495 (1509)
T KOG4645|consen 1428 GCVVLEMATGKRPWAELDN----EWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHA 1495 (1509)
T ss_pred             cceEEEeecCCCchhhccc----hhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhh
Confidence            9999999999999643211    1112222333445678888999999999999999999999999887753

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.98  E-value=3.6e-32  Score=249.62  Aligned_cols=200  Identities=11%  Similarity=0.127  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----------ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----------IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----------~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+..|+.++.++ +|||++.+...+.           ..||||++++ +...+.. ....+++..+..++.|++.||.
T Consensus        46 ~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~  125 (272)
T cd06637          46 EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLS  125 (272)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence            46788999999998 6999999884321           3599999864 4444443 2457899999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhhHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGT  153 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~  153 (401)
                      |||++ +++||||||+||+++.++.++|+|||++......    ....|++.|+|||++..     ..++.++|||||||
T Consensus       126 ~LH~~-~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv  204 (272)
T cd06637         126 HLHQH-KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGI  204 (272)
T ss_pred             HHHHC-CCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHH
Confidence            99999 9999999999999999999999999998764322    33567889999999863     35788999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ++|||++|..||.........    ............+..++..+.+|+.+||..+|.+|||+.+++.
T Consensus       205 ~l~el~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         205 TAIEMAEGAPPLCDMHPMRAL----FLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             HHHHHHhCCCCccccCHHHHH----HHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            999999999987543211110    0001111111123345678999999999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=6.6e-32  Score=246.33  Aligned_cols=204  Identities=11%  Similarity=0.099  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+.++++++|||++.++..+.     ..+|||++++.+. .+.....++++..+..++.|++.||.|||+. |
T Consensus        43 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~-~  121 (262)
T cd06613          43 DFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET-G  121 (262)
T ss_pred             hHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3578899999999999999999884433     3499999975444 4443447899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC---ccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG---RVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~---~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++|+||+|+||++++++.++|+|||++......    ....++..|++||.+.+.   .++.++||||||+++|+|+||.
T Consensus       122 i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~  201 (262)
T cd06613         122 KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQ  201 (262)
T ss_pred             ceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCC
Confidence            999999999999999999999999998765432    234577889999998776   7889999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .|+..................+ .....+...+.++.+++.+||..+|..|||+.+|+.
T Consensus       202 ~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         202 PPMFDLHPMRALFLISKSNFPP-PKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             CCCCCCCHHHHHHHHHhccCCC-ccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            9876532111100000000000 011223456788999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.98  E-value=4.9e-32  Score=246.41  Aligned_cols=201  Identities=17%  Similarity=0.195  Sum_probs=160.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.+..|+.++..++|||++.+...+.     .+||||++++ +...+.. ....+++..+..++.|++.||.|||+. 
T Consensus        41 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-  119 (255)
T cd08219          41 AVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK-  119 (255)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC-
Confidence            3467889999999999999998884433     3499999864 4444433 345689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |++|+||||+||++++++.++++|||.+......    ....+++.|+|||++.+..++.++|+||||+++|+|++|..|
T Consensus       120 ~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p  199 (255)
T cd08219         120 RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHP  199 (255)
T ss_pred             CcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCC
Confidence            9999999999999999999999999998765432    234578899999999888899999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |...........    +.. ......+..++..+.++|.+||+.||.+|||+.+++..
T Consensus       200 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         200 FQANSWKNLILK----VCQ-GSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             CCCCCHHHHHHH----Hhc-CCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            865432211111    111 11123455667789999999999999999999999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.98  E-value=4.8e-32  Score=248.18  Aligned_cols=202  Identities=14%  Similarity=0.127  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+.+|+.++..++|||++.+...+.     ..||||++++.+..+....+.+++..+..++.|++.||.|||+. |++|
T Consensus        51 ~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H  129 (267)
T cd06645          51 AVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSK-GKMH  129 (267)
T ss_pred             HHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ceec
Confidence            45788999999999999999984433     34999999765444444556799999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||+||+++.++.++|+|||++......    ....|++.|+|||++.   ...++.++|||||||++|+|++|..||
T Consensus       130 ~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~  209 (267)
T cd06645         130 RDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPM  209 (267)
T ss_pred             CCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999998754322    3346789999999975   355889999999999999999999887


Q ss_pred             CchhhHHhhhcc-ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRN-IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............ ......+..  .....++..+.++|.+||..+|++|||+.+|+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         210 FDLHPMRALFLMTKSNFQPPKL--KDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             ccccchhhHHhhhccCCCCCcc--cccCCCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence            543211000000 000000100  0112356679999999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.98  E-value=1.1e-32  Score=237.27  Aligned_cols=201  Identities=16%  Similarity=0.234  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhhC-CCeEEEeeeeccc--c---EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASMS-SFILLAVIFMFQI--P---SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~~-h~niv~~~~~~~~--~---v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ++.++.+.++..-. .|.||+++++|-.  .   -||.|..-...++..-.+++++..+-++...++.||.||.++-+|+
T Consensus       135 kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~vi  214 (391)
T KOG0983|consen  135 KRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVI  214 (391)
T ss_pred             HHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhccee
Confidence            45666777776443 5899999954442  2   5788876666777666788999999999999999999998877999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||+||+|||+|..|.+||||||.+.....+   +...|-+.|||||.+..   .+|+.++||||||++++||.||+.|+
T Consensus       215 HRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy  294 (391)
T KOG0983|consen  215 HRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPY  294 (391)
T ss_pred             ecccCccceEEccCCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCC
Confidence            9999999999999999999999998775544   34467789999999875   46899999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCC--hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .+...+...   +..+.+.. .+..+  ...++.+.+++..||++|+.+||...+++++
T Consensus       295 ~~c~tdFe~---ltkvln~e-PP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  295 KGCKTDFEV---LTKVLNEE-PPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             CCCCccHHH---HHHHHhcC-CCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            875333211   11111111 11122  2368899999999999999999999998874

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.98  E-value=4.5e-32  Score=250.82  Aligned_cols=210  Identities=19%  Similarity=0.281  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++..++|||++++...+.     .+||||++++.+..+....+++++..+..++.+++.||.|||+..+++
T Consensus        47 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~  126 (284)
T cd06620          47 RKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIM  126 (284)
T ss_pred             HHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCee
Confidence            468999999999999999999884443     349999997655555445567999999999999999999999743899


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      ||||+|+||+++.++.++|+|||++......  ....++..|+|||++.+..++.++|||||||++|+++||..||....
T Consensus       127 H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~  206 (284)
T cd06620         127 HRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSN  206 (284)
T ss_pred             ccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence            9999999999999999999999998654322  33568899999999988889999999999999999999999986532


Q ss_pred             hHHh---hh----ccccccccccccCCCCh-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          170 LDLI---RD----RNIQTLTDSCLEGQFSS-DEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       170 ~~~~---~~----~~~~~~~~~~~~~~~~~-~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ....   ..    .....+.... ...++. ..+..+.+|+.+||+.||++|||+.+++.....+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~  271 (284)
T cd06620         207 IDDDGQDDPMGILDLLQQIVQEP-PPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQ  271 (284)
T ss_pred             hhhhhhhhhhHHHHHHHHHhhcc-CCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence            2100   00    0111111111 112222 36778999999999999999999999998755444

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.98  E-value=2.3e-32  Score=259.74  Aligned_cols=203  Identities=15%  Similarity=0.234  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      .+.+.+|+.++++++||||++++..+.           ..++|++.+++...+.  ...+++..+..++.||+.||.|||
T Consensus        58 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH  135 (343)
T cd07878          58 ARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVK--CQKLSDEHVQFLIYQLLRGLKYIH  135 (343)
T ss_pred             HHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecCCCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456889999999999999998873321           3488888666655443  356999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +. ||+||||||+||+++.++.+||+|||+++..... ....+|+.|+|||++.+ ..++.++|||||||++|+|++|..
T Consensus       136 ~~-~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  214 (343)
T cd07878         136 SA-GIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKA  214 (343)
T ss_pred             HC-CeecccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCC
Confidence            99 9999999999999999999999999998875543 34568999999999877 568999999999999999999999


Q ss_pred             CCCchhhHHhhhc-------c----ccccccc----cc--cCCCC--------hHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          164 IPPSHALDLIRDR-------N----IQTLTDS----CL--EGQFS--------SDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       164 p~~~~~~~~~~~~-------~----~~~~~~~----~~--~~~~~--------~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      ||...........       .    ...+...    ..  ....+        ...++.+.+|+.+||+.||.+|||+.+
T Consensus       215 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~e  294 (343)
T cd07878         215 LFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASE  294 (343)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            8864321100000       0    0000000    00  00001        123456789999999999999999999


Q ss_pred             HHHH
Q 015733          219 LVTA  222 (401)
Q Consensus       219 vl~~  222 (401)
                      ++.+
T Consensus       295 ll~h  298 (343)
T cd07878         295 ALAH  298 (343)
T ss_pred             HhcC
Confidence            9974

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.98  E-value=2.7e-32  Score=254.47  Aligned_cols=205  Identities=14%  Similarity=0.255  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++.+++||||+.+...+.     .+||||+++++...+......+++..+..++.|++.||.|||+. |++
T Consensus        48 ~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~i~  126 (301)
T cd07873          48 PCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR-KVL  126 (301)
T ss_pred             hhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            456889999999999999999985444     34999999888777766667799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+ ..++.++|||||||++|+|+||+.||.
T Consensus       127 H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~  206 (301)
T cd07873         127 HRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFP  206 (301)
T ss_pred             CCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998764322    12346789999999876 457889999999999999999999886


Q ss_pred             chhhHHhhh-----------cccccccc---------ccccC----CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRD-----------RNIQTLTD---------SCLEG----QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~-----------~~~~~~~~---------~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .........           .....+..         +....    .....++..+.+||.+||+.||.+|||+.+++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         207 GSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             CCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            532211000           00000000         00000    0112356788999999999999999999999873

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.98  E-value=7.5e-32  Score=248.01  Aligned_cols=203  Identities=19%  Similarity=0.295  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCC--------CCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGET--------QPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~--------~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ..+|.+|+.++.+++|||++.+...+.     .+||||++++ +...+....        ..+++..+..++.|++.||.
T Consensus        52 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~  131 (275)
T cd05046          52 QSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMD  131 (275)
T ss_pred             HHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999999998884433     3499999954 444443222        26899999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  157 (401)
                      |||+. +++||||||+||+++.++.++++|||++......     ....++..|++||.+.+...+.++||||||+++|+
T Consensus       132 ~LH~~-~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~  210 (275)
T cd05046         132 HLSNA-RFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWE  210 (275)
T ss_pred             Hhhhc-CcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHH
Confidence            99999 9999999999999999999999999998754322     22345677999999988888999999999999999


Q ss_pred             HHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          158 LLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       158 l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +++ |..||........    .............+..++..+.+++.+||+.+|.+|||+.+++..|.
T Consensus       211 l~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         211 VFTQGELPFYGLSDEEV----LNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             HHhCCCCCccccchHHH----HHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            999 6666643221111    11111111112234556788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.98  E-value=8.5e-32  Score=244.91  Aligned_cols=201  Identities=18%  Similarity=0.276  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+|..|+.++++++|||++.++..+.     ..||||++++ +...+......++++.+..++.|++.||+|||+. ++
T Consensus        43 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i  121 (256)
T cd05112          43 EEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESS-NV  121 (256)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            468999999999999999999884433     3499999965 4444444456789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||+++.++.++|+|||++.......     ...++..|+|||.+.++.++.++||||||+++||+++ |..|
T Consensus       122 ~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p  201 (256)
T cd05112         122 IHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTP  201 (256)
T ss_pred             cccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999987654321     1224568999999998889999999999999999998 8887


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |............     ........+...+..+.+|+.+||+.+|++|||+.++++.|
T Consensus       202 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         202 YENRSNSEVVETI-----NAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             CCcCCHHHHHHHH-----hCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            7543221111110     00111122334567899999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.98  E-value=1e-31  Score=245.11  Aligned_cols=204  Identities=19%  Similarity=0.278  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++|+|++++...+.    ..+|||+++ ++...+.. ....+++..+..++.|++.||.|||+. |
T Consensus        44 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~  122 (260)
T cd05073          44 SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-N  122 (260)
T ss_pred             HHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3568999999999999999999874333    349999985 55555543 345689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||.+........     ..++..|+|||.+....++.++|+|||||++|+++| |..
T Consensus       123 i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~  202 (260)
T cd05073         123 YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI  202 (260)
T ss_pred             ccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999876543221     223567999999988889999999999999999999 787


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||...........     .......+.+...+.++.+++.+||+.+|++||++.++...|+.
T Consensus       203 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         203 PYPGMSNPEVIRA-----LERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             CCCCCCHHHHHHH-----HhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            7754322211111     11111223345567789999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.98  E-value=6.4e-32  Score=249.96  Aligned_cols=201  Identities=16%  Similarity=0.233  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+|+.++.+++|+|++.+...+.     ..||||++++.+. .+.. ....+++..+..++.|++.||.|||+. ||
T Consensus        45 ~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~i  123 (285)
T cd05632          45 SMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE-NT  123 (285)
T ss_pred             HHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            45788999999999999988774332     3499999975443 3332 345799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+||++++++.++|+|||++......   ....|+..|+|||++.+..++.++|+|||||++|+|++|..||..
T Consensus       124 iH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~  203 (285)
T cd05632         124 VYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRG  203 (285)
T ss_pred             eecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999998765432   234678999999999888899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~  221 (401)
                      .............+...  ...++...+..+.+|+..||+.||.+||+     +.+++.
T Consensus       204 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         204 RKEKVKREEVDRRVLET--EEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             CCHHHHHHHHHHhhhcc--ccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            42211111111111111  12344556778999999999999999999     666665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.98  E-value=8.9e-32  Score=244.86  Aligned_cols=200  Identities=14%  Similarity=0.167  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc------ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.+.+|+.++++++|||++.+...+.      .+||||++++ +...+.. ...++++.++..++.|++.||.+||+. 
T Consensus        43 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~-  121 (257)
T cd08223          43 RKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK-  121 (257)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            457889999999999999999874322      3599999865 4444433 245689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |++||||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+..++.++||||||++++++++|+.|
T Consensus       122 ~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~  201 (257)
T cd08223         122 HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHA  201 (257)
T ss_pred             CeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999998765432    234578899999999988899999999999999999999998


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |..........    .+.. ......+...+..+.+++.+||+.+|.+|||+.+++.+
T Consensus       202 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         202 FNAKDMNSLVY----RIIE-GKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             CCCCCHHHHHH----HHHh-cCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            76432211111    1111 11123455677889999999999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.98  E-value=6e-32  Score=250.53  Aligned_cols=205  Identities=17%  Similarity=0.265  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------CCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------TQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...|.+|+.++..++|||++.+...+.     .+||||++++ +...+...         ...+++..+..++.|++.||
T Consensus        53 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  132 (288)
T cd05061          53 RIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGM  132 (288)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999999999885443     4499999854 44444321         23457788999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      .|||++ +++||||||+||++++++.++|+|||+++......      ...++..|+|||.+.++.++.++|||||||++
T Consensus       133 ~~lH~~-~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l  211 (288)
T cd05061         133 AYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL  211 (288)
T ss_pred             HHHHhC-CCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHH
Confidence            999999 99999999999999999999999999987643321      22346789999999988899999999999999


Q ss_pred             HHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          156 LDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       156 ~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |||++ |..||.........    ..+... .....+..++..+.+++.+||+.+|.+|||+.++++.|....
T Consensus       212 ~el~~~~~~p~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         212 WEITSLAEQPYQGLSNEQVL----KFVMDG-GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             HHHHhCCCCCCCCCCHHHHH----HHHHcC-CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            99998 56666443221111    111111 112334556788999999999999999999999999888753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.98  E-value=4.5e-32  Score=250.74  Aligned_cols=205  Identities=16%  Similarity=0.216  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG--ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.+|+.++.+++|||++++...+.     ..||||+++++...+..  ....+++..+..++.|++.||.|||+. |
T Consensus        43 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~  121 (285)
T cd07861          43 PSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR-R  121 (285)
T ss_pred             hHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            357889999999999999999984443     34999999876665543  236799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ++||||||+||+++.++.++|+|||++......    ....+++.|+|||++.+. .++.++|||||||++|+|+||+.|
T Consensus       122 i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~  201 (285)
T cd07861         122 VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPL  201 (285)
T ss_pred             eeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999998764322    223457899999998764 478899999999999999999988


Q ss_pred             CCchhhHHhhhcc--------------------cccccccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          165 PPSHALDLIRDRN--------------------IQTLTDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~--------------------~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |............                    ..........   ......++.++.++|.+||+.||.+|||+.+|+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         202 FHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             CCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            8643211000000                    0000000000   0112235778899999999999999999999875


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      .
T Consensus       282 ~  282 (285)
T cd07861         282 H  282 (285)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.98  E-value=1.3e-31  Score=248.80  Aligned_cols=202  Identities=15%  Similarity=0.152  Sum_probs=156.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|..|+.++..++|||++.+...+.     .+||||++|+.+. .+......+++..+..++.|++.||.|||+. |+
T Consensus        53 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i  131 (292)
T cd06644          53 LEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM-KI  131 (292)
T ss_pred             HHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC-Ce
Confidence            467889999999999999999885433     3499999976544 3444456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+     ..++.++|||||||++|||++|
T Consensus       132 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g  211 (292)
T cd06644         132 IHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQI  211 (292)
T ss_pred             eecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcC
Confidence            99999999999999999999999988764322    23457889999999853     4468899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||........... ......  .....+..++.++.+++.+||+.+|++||++.++++.
T Consensus       212 ~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         212 EPPHHELNPMRVLLK-IAKSEP--PTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             CCCCccccHHHHHHH-HhcCCC--ccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            988754321111000 000000  0112244567789999999999999999999999763

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.98  E-value=8.3e-32  Score=245.72  Aligned_cols=203  Identities=20%  Similarity=0.301  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+|..|+.++++++|||++.++..+.     ..||||++++ +...+... ...+++..+..++.|++.||.|||++ |
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~-~  123 (261)
T cd05034          45 PEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR-N  123 (261)
T ss_pred             HHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            468999999999999999999984433     3499999864 55554433 35789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++|+||||+||++++++.++|+|||++.......     ....+..|+|||.+.+..++.++||||||+++|+++| |+.
T Consensus       124 i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~  203 (261)
T cd05034         124 YIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRV  203 (261)
T ss_pred             cccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999987754321     1223568999999998889999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||.+.......    ..+ ........+...+.++.+++.+||+.+|.+||++.++.+.|+.
T Consensus       204 p~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         204 PYPGMTNREVL----EQV-ERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCCCCHHHHH----HHH-HcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            87543221111    111 1111223345567889999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.98  E-value=6.6e-32  Score=251.24  Aligned_cols=200  Identities=15%  Similarity=0.197  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.+++.++|||++.+...+.     ..|+||++|+.+..+.. ...+++..+..++.|++.||+|||+. |++
T Consensus        60 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~l~~~~~~~i~~~l~~al~~LH~~-~i~  137 (296)
T cd06655          60 KELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVT-ETCMDEAQIAAVCRECLQALEFLHAN-QVI  137 (296)
T ss_pred             HHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            467889999999999999999884433     34999999765554443 34689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.+||+|||++.......    ...++..|+|||.+.+..++.++|||||||++|++++|..||..
T Consensus       138 H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~  217 (296)
T cd06655         138 HRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLN  217 (296)
T ss_pred             cCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999987644332    24578899999999988899999999999999999999998865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ......... ...  ........+..++..+.++|.+||..+|.+|||+.+++.
T Consensus       218 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         218 ENPLRALYL-IAT--NGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             CCHHHHHHH-HHh--cCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            321110000 000  001111234556778999999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.97  E-value=4e-32  Score=252.47  Aligned_cols=205  Identities=11%  Similarity=0.020  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ....+.+...+..++|+|++.++.+..         ..++|++...+...+. .....++..+..++.|++.||.|||++
T Consensus        67 ~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~  145 (294)
T PHA02882         67 DIDKIALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFK-RIKCKNKKLIKNIMKDMLTTLEYIHEH  145 (294)
T ss_pred             hHHHHHHHHHhccCCCCCCCcEEEeeeEecCCceEEEEEEehhccCHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344556666777889999888764321         2355655544444333 233468888999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCC-----------CCccccccccCCccccccCccCCCCcchhhHHHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-----------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLL  156 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  156 (401)
                       +++||||||+|||++.++.++|+|||+++....           .....||+.|+|||++.+..++.++|||||||++|
T Consensus       146 -~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~  224 (294)
T PHA02882        146 -GISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCML  224 (294)
T ss_pred             -CeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHH
Confidence             999999999999999999999999999876421           12245899999999999888999999999999999


Q ss_pred             HHHhCCCCCCchhh-HHhhhccccccccccccCC-CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          157 DLLSGKHIPPSHAL-DLIRDRNIQTLTDSCLEGQ-FSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       157 el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ||++|..||..... .................+. ....++..+.+++..||+.+|.+||++.++.+.|
T Consensus       225 el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        225 KWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            99999999865421 1000000001111111111 1234578899999999999999999999998866

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.4e-32  Score=260.73  Aligned_cols=199  Identities=19%  Similarity=0.258  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+.+|+.+++.++|||||+++.+..     ++||||+.++....+..+.+...+..+..++.|+.+|++|||++ +|||
T Consensus       100 ~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k-~ivH  178 (596)
T KOG0586|consen  100 QKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSK-NIVH  178 (596)
T ss_pred             HHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhc-ceec
Confidence            34999999999999999999994333     45999999776665555666677799999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      ||||.+||||+.+..+||+|||++.....+   .+++|++.|.|||++.+.+ .++.+|+||+|+++|-|+.|..||.+.
T Consensus       179 rdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~  258 (596)
T KOG0586|consen  179 RDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ  258 (596)
T ss_pred             cccchhhcccccccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence            999999999999999999999999987654   5789999999999999865 478999999999999999999998775


Q ss_pred             hhHHhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          169 ALDLIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ...        .+-.+.+++  .+|.-.+.++.++|+++|-.+|.+|+++.+++..-+.
T Consensus       259 ~lk--------~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~  309 (596)
T KOG0586|consen  259 NLK--------ELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWR  309 (596)
T ss_pred             ccc--------cccchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhhhccc
Confidence            432        333333322  3466778899999999999999999999999886543

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=7.6e-32  Score=254.92  Aligned_cols=201  Identities=16%  Similarity=0.132  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.+|+.+|.+++ |||+|.+...++     .+|||++.|+ +.+.+...  .+++..+..++.|++.|+.|||+. |
T Consensus        79 ~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~-g  155 (382)
T KOG0032|consen   79 REDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSL-G  155 (382)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            478999999999999 999999995555     3499999976 33333333  399999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC----CCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDD----VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~----~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+||||||+|+|+...    +.+|++|||++......   ...+||+.|+|||++....|+..+||||+||++|.|++|.
T Consensus       156 vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~  235 (382)
T KOG0032|consen  156 VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGV  235 (382)
T ss_pred             ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCC
Confidence            9999999999999643    57999999999997763   3468999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||.+.............-.  ....+.-+.++..+.++|..|+..||.+|+|+.+++++
T Consensus       236 ~PF~~~~~~~~~~~i~~~~~--~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  236 PPFWGETEFEIFLAILRGDF--DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             CCCcCCChhHHHHHHHcCCC--CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            99987654333221111111  12223345678999999999999999999999999984

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.97  E-value=7.1e-32  Score=248.54  Aligned_cols=199  Identities=14%  Similarity=0.214  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++++++|||++.+...+.     .+||||++++.+..+.. ..++++..+..++.|++.||.|||++ |++
T Consensus        46 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~-~iv  123 (277)
T cd06642          46 IEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLK-PGPLEETYIATILREILKGLDYLHSE-RKI  123 (277)
T ss_pred             HHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcC-Cee
Confidence            357899999999999999998884433     34999999764444432 35789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |+||+|+||+++.++.++|+|||++.......    ...++..|+|||.+.+..++.++|||||||++|||+||..|+..
T Consensus       124 H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  203 (277)
T cd06642         124 HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSD  203 (277)
T ss_pred             ccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999999999999987654332    23567899999999988899999999999999999999988754


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......    ... .........+...+..+.++|.+||+.+|++|||+.+|+.+
T Consensus       204 ~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         204 LHPMRV----LFL-IPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             cchhhH----Hhh-hhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            321110    111 11111223344567889999999999999999999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.4e-32  Score=259.79  Aligned_cols=197  Identities=16%  Similarity=0.129  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHhhh---CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           18 TYFIVSLVLIASM---SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        18 ~~f~~E~~~l~~~---~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++.|..++...   .||||++++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |
T Consensus        38 ~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~-~  116 (330)
T cd05586          38 AHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKY-D  116 (330)
T ss_pred             HHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3455676676655   6999999885443     44999999764443344566799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+. .++.++|||||||++|+|+||..|
T Consensus       117 ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~P  196 (330)
T cd05586         117 IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSP  196 (330)
T ss_pred             eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCC
Confidence            999999999999999999999999998763322    245689999999998764 479999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCC-hHHHHHHHHHHHHhcccCCCCCC----CHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFS-SDEGTELVRLASRCLQYEPRERP----NPRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li~~cl~~~p~~Rp----s~~~vl~  221 (401)
                      |.............    ...  ..++ ...+.++.+++.+||+.||.+||    ++.+++.
T Consensus       197 f~~~~~~~~~~~i~----~~~--~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         197 FYAEDTQQMYRNIA----FGK--VRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             CCCCCHHHHHHHHH----cCC--CCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            86543221111111    000  1122 23577889999999999999998    4666655

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=7.6e-32  Score=246.59  Aligned_cols=200  Identities=14%  Similarity=0.141  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..|.+|+.++++++|+|++.+...+.     ..||||++|+.+..+..+..++++..+..++.|++.||+|||+. +++|
T Consensus        47 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H  125 (265)
T cd06631          47 EKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNN-CVVH  125 (265)
T ss_pred             HHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence            56889999999999999999884433     34999999765554444556789999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCC----------CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRD----------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      +||+|+||++++++.++|+|||++.....          .....++..|+|||.+.+..++.++|||||||++|++++|.
T Consensus       126 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~  205 (265)
T cd06631         126 RDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGK  205 (265)
T ss_pred             CCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCC
Confidence            99999999999999999999998875421          11235788999999999888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .||.........   .............+...+..+.++|.+||+.+|++||++.+++.
T Consensus       206 ~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         206 PPLASMDRLAAM---FYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CccccCChHHHH---HHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            987542111000   00000101123355667888999999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=5.1e-32  Score=259.64  Aligned_cols=205  Identities=16%  Similarity=0.133  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++..++||||+.++..+.     ..||||++|+.+..+.. ...+++..+..++.||+.||.|||++ ||
T Consensus        86 ~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  163 (371)
T cd05622          86 DSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS-NYDVPEKWARFYTAEVVLALDAIHSM-GF  163 (371)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            3456888999999999999999885443     34999999764443432 34589999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC----ccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG----RVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~----~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+.    .++.++|||||||++|||++|
T Consensus       164 vHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G  243 (371)
T cd05622         164 IHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVG  243 (371)
T ss_pred             EeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhC
Confidence            99999999999999999999999998865432     245689999999998753    378999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCC--CCCHHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRE--RPNPRSLVTALV  224 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~l~  224 (401)
                      ..||................  .......+...+..+.++|..||..++.+  |+++.+++.+..
T Consensus       244 ~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~  306 (371)
T cd05622         244 DTPFYADSLVGTYSKIMNHK--NSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLF  306 (371)
T ss_pred             CCCCCCCCHHHHHHHHHcCC--CcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcc
Confidence            99987543221111111100  00111122357888999999999844433  778999987653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=5.2e-32  Score=250.58  Aligned_cols=202  Identities=16%  Similarity=0.267  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+..|+.++.+++|+|++.+...+.     ..||||++|+ +...+.. ....+++..+..++.|++.||.|||+. |+
T Consensus        45 ~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i  123 (285)
T cd05630          45 SMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE-RI  123 (285)
T ss_pred             HHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CE
Confidence            45788999999999999998874332     3499999865 4343322 345699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+||+++.++.++|+|||++.......   ...|++.|+|||.+.+..++.++|||||||++|+|++|..||..
T Consensus       124 iH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~  203 (285)
T cd05630         124 VYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ  203 (285)
T ss_pred             EeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999987654332   24678999999999988899999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      ...... .......... ....++...+.++.+|+.+||+.||.+|||     +.+++.+
T Consensus       204 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         204 RKKKIK-REEVERLVKE-VQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             CCccch-HHHHHhhhhh-hhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            321100 0111111111 112344556778999999999999999999     7888863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=1.4e-31  Score=245.88  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=157.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|..|+.++++++|||++.++....     .+||||++|+.+..+..+..++++..+..++.|++.||.|||+. +++
T Consensus        52 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~  130 (272)
T cd06629          52 VKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK-GIL  130 (272)
T ss_pred             HHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC-Cee
Confidence            457889999999999999998884433     34999999765444444446899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCc--cCCCCcchhhHHHHHHHHhCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||||+|+||+++.++.++|+|||+++.....      ....++..|++||.+....  ++.++|+||||+++|++++|..
T Consensus       131 H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~  210 (272)
T cd06629         131 HRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRR  210 (272)
T ss_pred             ecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998765432      1235678999999987654  7899999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+............................++..+.++|.+||+.+|++|||+.+|+.+
T Consensus       211 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         211 PWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             CCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            87542211000000000001111112223457889999999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=8.5e-32  Score=249.37  Aligned_cols=207  Identities=15%  Similarity=0.206  Sum_probs=157.4

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccc----cCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNF----SGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~----~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....|..|+.++.++. ||||+.++....     ..+|||+.+++..+.    ......+++..+..++.|++.||+|||
T Consensus        45 ~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh  124 (288)
T cd06616          45 EQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLK  124 (288)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3567899999999996 999999884332     238999986543332    123467999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccC---ccCCCCcchhhHHHHHHHH
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG---RVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~---~~~~~~Dv~slG~~l~el~  159 (401)
                      +..+++||||||+||+++.++.++|+|||++......   ....+++.|+|||.+.+.   .++.++|||||||++|+|+
T Consensus       125 ~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~  204 (288)
T cd06616         125 EELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVA  204 (288)
T ss_pred             hcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHH
Confidence            7448999999999999999999999999998764332   234578899999999876   6899999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|+.||..................+.+....+..++.++.+|+.+||+.+|++|||+.+|+..
T Consensus       205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         205 TGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             hCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            999997653211000000000011112222234577889999999999999999999999874

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=1e-31  Score=245.82  Aligned_cols=200  Identities=14%  Similarity=0.111  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+.++.+++|||++.+...+.       ..||||++|+.+..+......+++..+.+++.|++.||.|||+. +
T Consensus        48 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~  126 (265)
T cd06652          48 VNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSN-M  126 (265)
T ss_pred             HHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            467888999999999999999885433       23899998754443433445689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC-------CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++|+||||+||+++.++.++|+|||++.....       .....++..|+|||.+.+..++.++|||||||++|+|++|+
T Consensus       127 i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~  206 (265)
T cd06652         127 IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEK  206 (265)
T ss_pred             EecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999875432       12345788999999998888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||.......    ..............|...+..+.+++.+||. +|.+||++++|++.
T Consensus       207 ~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         207 PPWAEFEAMA----AIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             CCCCccchHH----HHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            9975432111    1111111112234566777889999999995 99999999999763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1e-31  Score=247.05  Aligned_cols=198  Identities=13%  Similarity=0.184  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.+++.++|||++.+...+.     ..|+||++++ +...+. . .++++..+..++.|++.||.|||+. ++
T Consensus        43 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~-~-~~~~~~~~~~~~~ql~~~l~~lh~~-~i  119 (274)
T cd06609          43 IEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLK-P-GKLDETYIAFILREVLLGLEYLHEE-GK  119 (274)
T ss_pred             HHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHh-h-cCCCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            457889999999999999999884333     3499999865 444443 2 3899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||+|+||++++++.++|+|||+++.....    ....+++.|++||.+.+..++.++||||||+++|+|+||..||.
T Consensus       120 ~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~  199 (274)
T cd06609         120 IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLS  199 (274)
T ss_pred             ccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999998875543    23457788999999998889999999999999999999999875


Q ss_pred             chhhHHhhhccccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......    ... .........+.. .+..+.+++.+||..+|++|||+++++..
T Consensus       200 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         200 DLHPMRV----LFL-IPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             cCchHHH----HHH-hhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            4321110    111 111112222233 67789999999999999999999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=1e-31  Score=252.02  Aligned_cols=200  Identities=16%  Similarity=0.158  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+..|+.++..++|||++.+...+.     .+||||+.|++...+.....++++..+..++.|++.||.|||+. |++|
T Consensus        66 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~-gi~H  144 (313)
T cd06633          66 QDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH-NMIH  144 (313)
T ss_pred             HHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Ceec
Confidence            57889999999999999988884333     34999999888777766667899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||+|+||+++.++.+||+|||++..........++..|+|||++.   .+.++.++|||||||++|+|++|..|+....
T Consensus       145 ~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         145 RDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             CCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999999987766556667889999999985   3568889999999999999999999876532


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..........    ...........+..+.+++.+||+.+|.+||++.+++..
T Consensus       225 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         225 AMSALYHIAQ----NDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             hHHHHHHHHh----cCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1111000000    001111123455679999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=1.1e-31  Score=245.59  Aligned_cols=205  Identities=16%  Similarity=0.216  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC--CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE--TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      +...+.+|+..++.++|+|++.+.....     ..||||++|+ +...+...  ...+++..+..++.|++.||.|||+.
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~  121 (267)
T cd06610          42 SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN  121 (267)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            4578999999999999999999884333     3499999865 44444332  25689999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccC-ccCCCCcchhhHHHHHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el  158 (401)
                       |++||||+|+||++++++.++|+|||++.......        ...++..|++||.+... ..+.++|+|||||++|+|
T Consensus       122 -~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l  200 (267)
T cd06610         122 -GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIEL  200 (267)
T ss_pred             -CeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHH
Confidence             99999999999999999999999999987654322        23578899999998876 689999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCC-ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF-SSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ++|..||............... ..+...... ....+..+.+++.+||..||++|||+.+++.+
T Consensus       201 ~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         201 ATGAAPYSKYPPMKVLMLTLQN-DPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             HhCCCCccccChhhhHHHHhcC-CCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            9999997543211111111111 011111111 13567889999999999999999999999763

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.97  E-value=9.9e-32  Score=246.86  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=157.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCccc-cccc-----CCCCCCCHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFS-NNFS-----GETQPMKWAMRLRVALHIA   78 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~-~~~~-----~~~~~l~~~~~~~i~~qi~   78 (401)
                      +.++|.+|+.++++++|||++.++....           ..++||+.++.+ ..+.     .....+++..+..++.|++
T Consensus        44 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  123 (273)
T cd05074          44 DIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIA  123 (273)
T ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999885321           247888885533 2221     1223589999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||+|||++ |++||||||+||++++++.+||+|||+++......      ...+++.|++||.+....++.++||||||
T Consensus       124 ~~l~~lH~~-~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG  202 (273)
T cd05074         124 SGMEYLSSK-NFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFG  202 (273)
T ss_pred             HHHHHHHhC-CEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHH
Confidence            999999999 99999999999999999999999999988654322      22345689999999888899999999999


Q ss_pred             HHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          153 TLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       153 ~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |++|+|++ |..||...........    +. .......+...+..+.+++.+||+.+|++|||+.+++..|+.+
T Consensus       203 ~il~el~~~g~~p~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         203 VTMWEIMTRGQTPYAGVENSEIYNY----LI-KGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HHHHHHhhCCCCCCCCCCHHHHHHH----HH-cCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            99999999 6777654322111110    00 0011123345677899999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=9.5e-32  Score=248.81  Aligned_cols=205  Identities=16%  Similarity=0.246  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE---TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...|.+|+.++.+++|||++.++..+.     .+||||++|+.+..+...   ...+++..+..++.|++.||.|||+..
T Consensus        43 ~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~  122 (286)
T cd06622          43 FNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH  122 (286)
T ss_pred             HHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            357999999999999999998884333     349999997644444332   347999999999999999999999743


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCc------cCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGR------VTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~~l~el~t  160 (401)
                      |++||||||+||+++.++.++|+|||++......  ....+++.|+|||.+.+..      ++.++|||||||++|+|++
T Consensus       123 ~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~  202 (286)
T cd06622         123 NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMAL  202 (286)
T ss_pred             CEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHh
Confidence            8999999999999999999999999998765332  3345778999999986543      5889999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |..||.......... ....+.. ......+..++.++.++|.+||+.+|++||++.+++..-
T Consensus       203 g~~pf~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~  263 (286)
T cd06622         203 GRYPYPPETYANIFA-QLSAIVD-GDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHP  263 (286)
T ss_pred             CCCCCCCcchhhHHH-HHHHHhh-cCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcCh
Confidence            999985432211110 1111111 112345666888999999999999999999999998743

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-31  Score=246.76  Aligned_cols=202  Identities=15%  Similarity=0.191  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|..|+.++++++|||++.+...+.     ..||||++++ +...+.....++++..+..++.|++.||.|||+. |
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~-~  123 (280)
T cd06611          45 ELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH-K  123 (280)
T ss_pred             HHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3467999999999999999999985433     3499999975 4444444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++|+||+|+||+++.++.++|+|||++......    ....+++.|++||.+.     +..++.++||||||+++|+|++
T Consensus       124 i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~  203 (280)
T cd06611         124 VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQ  203 (280)
T ss_pred             cccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHh
Confidence            999999999999999999999999987764332    2345788999999975     2447789999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccc-cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDS-CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+.||........    ...+... ......+..++.++.++|.+||+.+|.+|||+.++++.
T Consensus       204 g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         204 MEPPHHELNPMRV----LLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CCCCcccCCHHHH----HHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            9998765321110    0111000 00112244567889999999999999999999999874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.97  E-value=2.3e-31  Score=245.15  Aligned_cols=201  Identities=13%  Similarity=0.193  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++++++|||++.+...+.     ..||||++|+.+..+.. ..++++..+..++.|++.||.|||+. +++
T Consensus        46 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~-~~~l~~~~~~~~~~~l~~~l~~lh~~-~iv  123 (277)
T cd06640          46 IEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLR-AGPFDEFQIATMLKEILKGLDYLHSE-KKI  123 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC-Ccc
Confidence            467899999999999999999884433     34999999754443332 35689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |+||+|+||+++.++.++|+|||++.......    ...++..|+|||.+.+..++.++|+|||||++|||+||..|+..
T Consensus       124 H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  203 (277)
T cd06640         124 HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSD  203 (277)
T ss_pred             CcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999987654332    23567889999999888899999999999999999999988754


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .......     ...........+...+..+.+++.+||+.+|.+||++.+++..-.
T Consensus       204 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~  255 (277)
T cd06640         204 MHPMRVL-----FLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKF  255 (277)
T ss_pred             cChHhHh-----hhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChH
Confidence            3211110     111112223445677889999999999999999999999987543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=1.3e-31  Score=244.70  Aligned_cols=203  Identities=15%  Similarity=0.175  Sum_probs=162.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.+++.++|||++.++..+.     .+||||++|+.+..+..+...+++..+..++.|++.||.|||+. ++
T Consensus        36 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~~  114 (262)
T cd05572          36 QQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNR-GI  114 (262)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC-Cc
Confidence            4577999999999999999999884333     34999999765554444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +|+||+|+||+++.++.++|+|||++......   ....+++.|++||.+.+..++.++|+||||+++|++++|..||..
T Consensus       115 ~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  194 (262)
T cd05572         115 IYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGE  194 (262)
T ss_pred             ccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCC
Confidence            99999999999999999999999998876543   234578899999999888899999999999999999999998765


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~  221 (401)
                      ...+.  ......+........+|...+..+.++|.+||+.+|++||+     +.++++
T Consensus       195 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         195 DDEDP--MEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             CCCCH--HHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            43100  01111111112233455566889999999999999999999     777765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=1.4e-31  Score=252.66  Aligned_cols=204  Identities=16%  Similarity=0.161  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+..|+.+++.++||||++++..+.     ..||||++++ +...+.. ....+++..+..++.|++.||.|||++ |+
T Consensus        44 ~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~i  122 (327)
T cd08227          44 TFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM-GY  122 (327)
T ss_pred             HHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            45667999999999999999884443     3499999965 4444432 245689999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----------CccccccccCCcccccc--CccCCCCcchhhHHHHHH
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~e  157 (401)
                      +||||||+|||++.++.++++||+........           ....++..|+|||++.+  ..++.++|||||||++||
T Consensus       123 iH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~e  202 (327)
T cd08227         123 VHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACE  202 (327)
T ss_pred             ecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHH
Confidence            99999999999999999999999864432111           12245678999999976  458999999999999999


Q ss_pred             HHhCCCCCCchhhHHhh----hccccccccc------------------------------------cccCCCChHHHHH
Q 015733          158 LLSGKHIPPSHALDLIR----DRNIQTLTDS------------------------------------CLEGQFSSDEGTE  197 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~----~~~~~~~~~~------------------------------------~~~~~~~~~~~~~  197 (401)
                      |++|..||.........    ........+.                                    ..........+..
T Consensus       203 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (327)
T cd08227         203 LANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPH  282 (327)
T ss_pred             HHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHH
Confidence            99999998542111000    0000000000                                    0000112235678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          198 LVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       198 l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.+|+.+||+.||++|||+.+++++
T Consensus       283 ~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         283 FHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             HHHHHHHHHhhCchhcCCHHHHhcC
Confidence            9999999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1.2e-31  Score=249.01  Aligned_cols=206  Identities=15%  Similarity=0.182  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....+.+|+.++.+++|||++.+....       ..+||||+++++...+......+++..+..++.||+.||.|||+. 
T Consensus        47 ~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  125 (293)
T cd07843          47 FPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN-  125 (293)
T ss_pred             chhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            345678999999999999999887322       234999999877777665556799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      |++|+||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+. ..+.++|+||||+++|+|++|..
T Consensus       126 ~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~  205 (293)
T cd07843         126 WILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKP  205 (293)
T ss_pred             CeeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999998875543    223467889999998764 46899999999999999999998


Q ss_pred             CCCchhhHHhhh-------------------------ccccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHH
Q 015733          164 IPPSHALDLIRD-------------------------RNIQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       164 p~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      ||..........                         ..........+...++.. .+..+.++|.+||+.+|++|||+.
T Consensus       206 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~  285 (293)
T cd07843         206 LFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAE  285 (293)
T ss_pred             CCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHH
Confidence            875432110000                         000000011112223333 577899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++..
T Consensus       286 ell~~  290 (293)
T cd07843         286 DALKH  290 (293)
T ss_pred             HHhcC
Confidence            99763

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-31  Score=248.23  Aligned_cols=204  Identities=15%  Similarity=0.259  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++++++|+|++.+...+.     ..||||++++++..+......+++..+..++.||+.||.|||+. +++
T Consensus        44 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~  122 (288)
T cd07833          44 KKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSH-NII  122 (288)
T ss_pred             hhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            467899999999999999999884433     44999999887776666667799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||+|+||++++++.+||+|||++.......     ...++..|+|||++.+. .++.++||||||+++|+|++|..||
T Consensus       123 H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~  202 (288)
T cd07833         123 HRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLF  202 (288)
T ss_pred             cCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999988755432     34567889999999887 7899999999999999999999887


Q ss_pred             CchhhHH--hhh------------------cccc--ccccc----cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          166 PSHALDL--IRD------------------RNIQ--TLTDS----CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       166 ~~~~~~~--~~~------------------~~~~--~~~~~----~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .......  ...                  ....  .....    .....++..++.++.++|.+||+.+|++|||++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  282 (288)
T cd07833         203 PGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDEL  282 (288)
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHH
Confidence            5431110  000                  0000  00000    00011233457889999999999999999999998


Q ss_pred             HH
Q 015733          220 VT  221 (401)
Q Consensus       220 l~  221 (401)
                      +.
T Consensus       283 l~  284 (288)
T cd07833         283 LQ  284 (288)
T ss_pred             hc
Confidence            75

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.97  E-value=1.8e-31  Score=249.37  Aligned_cols=207  Identities=14%  Similarity=0.082  Sum_probs=159.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .....|.+|+.+++.++||||+.++..+.     .+||||++|+.+..+....+++++..+..++.|++.||.|||+. |
T Consensus        43 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~  121 (305)
T cd05609          43 NQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNY-G  121 (305)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34568889999999999999999984433     45999999765554544556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-------------------CccccccccCCccccccCccCCCCcchh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------------------RSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      ++||||||+||+++.++.++|+|||+++.....                   ....++..|+|||.+.+..++.++|+||
T Consensus       122 i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  201 (305)
T cd05609         122 IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWA  201 (305)
T ss_pred             ccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHH
Confidence            999999999999999999999999988641100                   1124577899999998888999999999


Q ss_pred             hHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          151 FGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       151 lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |||++||+++|..||.+..............   ......+...+.++.++|.+||+.+|.+||++.++.+.|..
T Consensus       202 lG~vl~el~~g~~pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         202 MGIILYEFLVGCVPFFGDTPEELFGQVISDD---IEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc---cCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            9999999999999986543221111111100   00011122467789999999999999999997666655543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=1.9e-31  Score=273.55  Aligned_cols=200  Identities=19%  Similarity=0.225  Sum_probs=153.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....|..|+.++.+++|||||.++..+.       .+||||++++ |...+..   ....+++..++.|+.||+.||.||
T Consensus        55 ~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYL  134 (1021)
T PTZ00266         55 EKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYC  134 (1021)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999884331       3599999964 5444432   246799999999999999999999


Q ss_pred             hcCC------CceeccCCCCCEEECC-----------------CCCeEEecccCccccCCC---CccccccccCCccccc
Q 015733           85 TSKE------RALYHDLNAYRIVFDD-----------------DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLR  138 (401)
Q Consensus        85 H~~~------~ivH~dlk~~Nill~~-----------------~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~  138 (401)
                      |+..      +||||||||+||||+.                 .+.+||+|||++......   ....||+.|+|||++.
T Consensus       135 Hs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~  214 (1021)
T PTZ00266        135 HNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLL  214 (1021)
T ss_pred             HhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHh
Confidence            9841      5999999999999964                 345899999998875433   2346899999999986


Q ss_pred             c--CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCC-ChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          139 T--GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF-SSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       139 ~--~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      +  ..++.++||||||||+|||+||..||........    +...+...  ..+ ....+.++.+||..||+.+|.+|||
T Consensus       215 ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~q----li~~lk~~--p~lpi~~~S~eL~dLI~~~L~~dPeeRPS  288 (1021)
T PTZ00266        215 HETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQ----LISELKRG--PDLPIKGKSKELNILIKNLLNLSAKERPS  288 (1021)
T ss_pred             ccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHH----HHHHHhcC--CCCCcCCCCHHHHHHHHHHhcCChhHCcC
Confidence            4  4588999999999999999999999854311100    00001100  111 1235678999999999999999999


Q ss_pred             HHHHHH
Q 015733          216 PRSLVT  221 (401)
Q Consensus       216 ~~~vl~  221 (401)
                      +.+++.
T Consensus       289 a~QlL~  294 (1021)
T PTZ00266        289 ALQCLG  294 (1021)
T ss_pred             HHHHhc
Confidence            999985

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.97  E-value=1.8e-31  Score=244.62  Aligned_cols=203  Identities=13%  Similarity=0.161  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCC--CHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPM--KWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l--~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      +.+.|.+|+.+++.++|+||+.+...+.     ..|+||++++ +...+.....++  ++..+..++.||+.||.|||++
T Consensus        48 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  127 (268)
T cd06624          48 YVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN  127 (268)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence            3467899999999999999999884433     3499999865 444444434556  8889999999999999999999


Q ss_pred             CCceeccCCCCCEEECC-CCCeEEecccCccccCCC----CccccccccCCccccccCc--cCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~t  160 (401)
                       |++||||||+||+++. ++.++|+|||++......    ....+++.|+|||.+.+..  ++.++||||||+++|+|++
T Consensus       128 -~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~  206 (268)
T cd06624         128 -QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMAT  206 (268)
T ss_pred             -CEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHh
Confidence             9999999999999976 678999999998764332    2245788999999987643  7889999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |..|+.........   ............++...+.++.+++.+||+.+|.+|||+.+++.+
T Consensus       207 g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         207 GKPPFIELGEPQAA---MFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             CCCCCccccChhhh---HhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence            99887542211000   000000011234566678889999999999999999999999764

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=1.7e-31  Score=247.76  Aligned_cols=199  Identities=17%  Similarity=0.159  Sum_probs=159.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.+.+|+.++++++||||+.++..+.     ..||||++++.+..+......+++..+..++.|++.||.|||+. |+
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~-~i  122 (290)
T cd05580          44 QVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSL-DI  122 (290)
T ss_pred             HHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            4567899999999999999999884433     34999997654444444457899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +|+||+|+||+++.++.+||+|||++....... ...+++.|++||.+.+...+.++||||||+++|+|++|..||....
T Consensus       123 ~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  202 (290)
T cd05580         123 VYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN  202 (290)
T ss_pred             ecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999988765443 3467899999999988888999999999999999999999876543


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVT  221 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~  221 (401)
                      .....    ..+..  ....+|...+..+.+++.+||..+|.+|+     ++++++.
T Consensus       203 ~~~~~----~~~~~--~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         203 PIQIY----EKILE--GKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             HHHHH----HHHhc--CCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHc
Confidence            21111    11111  11234556678899999999999999998     6677664

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.97  E-value=1.2e-31  Score=254.77  Aligned_cols=207  Identities=19%  Similarity=0.288  Sum_probs=156.8

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCc-ccccccCC---------------------------
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSGE---------------------------   61 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~~---------------------------   61 (401)
                      ...+.+|+.++.++ +|||++.+.....      .+||||++++ +...+...                           
T Consensus        54 ~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (343)
T cd05103          54 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISED  133 (343)
T ss_pred             HHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhh
Confidence            35688999999999 6799988773221      3489999965 33332211                           


Q ss_pred             ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEE
Q 015733           62 ---------------------------------------TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVF  102 (401)
Q Consensus        62 ---------------------------------------~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill  102 (401)
                                                             ...+++..+..++.|++.||.|||++ |++||||||+||++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~  212 (343)
T cd05103         134 LKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR-KCIHRDLAARNILL  212 (343)
T ss_pred             hhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCccCeEEE
Confidence                                                   13478889999999999999999999 99999999999999


Q ss_pred             CCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhh
Q 015733          103 DDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRD  175 (401)
Q Consensus       103 ~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~  175 (401)
                      +.++.+||+|||++.......      ...+++.|+|||.+.+..++.++||||||+++|+|++ |..|+.......   
T Consensus       213 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---  289 (343)
T cd05103         213 SENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE---  289 (343)
T ss_pred             cCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH---
Confidence            999999999999987643221      1234567999999988889999999999999999997 777765421110   


Q ss_pred             ccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                       .....+........|...+.++.+++..||+.+|.+|||+.+|++.|+.+..
T Consensus       290 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         290 -EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             -HHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence             0111111111222344456789999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.97  E-value=1.1e-31  Score=244.85  Aligned_cols=202  Identities=16%  Similarity=0.190  Sum_probs=162.3

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+.+..|+.++++++|||++.++..+.       ..+|||++++ +...+..   ...++++..++.++.||+.||.|
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~  120 (265)
T cd08217          41 KEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYE  120 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999873221       3499999864 4444432   25679999999999999999999


Q ss_pred             Hh-----cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHH
Q 015733           84 CT-----SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH-----~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      ||     +. +++|+||+|+||+++.++.+||+|||++.......    ...+++.|++||.+.+..++.++||||||++
T Consensus       121 lH~~~~~~~-~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~i  199 (265)
T cd08217         121 CHNRSDPGN-TVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCL  199 (265)
T ss_pred             HhcCccccC-cceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHH
Confidence            99     88 99999999999999999999999999988765433    3457889999999998889999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|+|++|..|+.........     ..+.......++...+..+.+++.+||+.+|++|||+.+|+++
T Consensus       200 l~~l~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         200 IYELCALSPPFTARNQLQLA-----SKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             HHHHHHCCCcccCcCHHHHH-----HHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            99999999987654221111     1111112234566778899999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=7.9e-32  Score=250.20  Aligned_cols=201  Identities=16%  Similarity=0.182  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+..+..++|||++.++..+.     ..||||++++.+..+.. .+.+++..+..++.||+.||.|||++ |++
T Consensus        63 ~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~~-~iv  140 (292)
T cd06658          63 RELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVT-HTRMNEEQIATVCLSVLRALSYLHNQ-GVI  140 (292)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CEe
Confidence            467899999999999999888773322     44999999765544443 34689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.++|+|||++......    ....++..|+|||.+.+..++.++||||||+++||+++|..||..
T Consensus       141 H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  220 (292)
T cd06658         141 HRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFN  220 (292)
T ss_pred             ecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999998754322    234578899999999888899999999999999999999999765


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......... ......+..  ......+..+.+++.+||..||.+|||+.++++.
T Consensus       221 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         221 EPPLQAMRR-IRDNLPPRV--KDSHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             CCHHHHHHH-HHhcCCCcc--ccccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            321111000 111111111  1122456789999999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-31  Score=247.65  Aligned_cols=204  Identities=15%  Similarity=0.263  Sum_probs=154.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++++++||||+.+...+.     ..||||+++++...+......+++..+..++.|++.||.|||+. |++
T Consensus        47 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~-~i~  125 (291)
T cd07844          47 PFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQR-RVL  125 (291)
T ss_pred             chhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            356789999999999999999884443     34999999877776665566899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.+||+|||+++.....    ....++..|+|||.+.+ ..++.++||||+||++|+|++|..||.
T Consensus       126 H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~  205 (291)
T cd07844         126 HRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFP  205 (291)
T ss_pred             cccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998754321    12345788999999876 458899999999999999999998875


Q ss_pred             chhh--HHhh----------hcccccccc---------cccc-C---CCChHHH--HHHHHHHHHhcccCCCCCCCHHHH
Q 015733          167 SHAL--DLIR----------DRNIQTLTD---------SCLE-G---QFSSDEG--TELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       167 ~~~~--~~~~----------~~~~~~~~~---------~~~~-~---~~~~~~~--~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      ....  ....          .........         .... .   .......  ..+.+++.+||+.+|.+|||+.++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~  285 (291)
T cd07844         206 GSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEA  285 (291)
T ss_pred             CCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHH
Confidence            4320  0000          000000000         0000 0   0001122  678899999999999999999998


Q ss_pred             HH
Q 015733          220 VT  221 (401)
Q Consensus       220 l~  221 (401)
                      +.
T Consensus       286 l~  287 (291)
T cd07844         286 MK  287 (291)
T ss_pred             hc
Confidence            75

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-33  Score=240.86  Aligned_cols=202  Identities=15%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeee-ecc--cc--EeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIF-MFQ--IP--SYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~-~~~--~~--v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      -.+.++|+.++.+...|.+|++++ .+.  .+  |||||. |+..+.+.-++++|++.++..++++.+.||+|||.. .-
T Consensus        72 LQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~-~K  150 (502)
T KOG0574|consen   72 LQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL-KK  150 (502)
T ss_pred             HHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH-HH
Confidence            468999999999999999999993 333  22  999998 666666666789999999999999999999999999 89


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||..|||++-+|.+||+|||++....++    .+..|||.|||||++..-.|+.++||||||++..||..|++|+.
T Consensus       151 IHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYs  230 (502)
T KOG0574|consen  151 IHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYS  230 (502)
T ss_pred             HHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcc
Confidence            99999999999999999999999999876543    56789999999999999999999999999999999999998865


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +-- +  ...++.-...+.....-|...+.++.++|+.||-++|++|-|+.+++++
T Consensus       231 DIH-P--MRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  231 DIH-P--MRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             ccc-c--cceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            420 0  0111111111211122367889999999999999999999999888773

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.97  E-value=1.7e-31  Score=248.58  Aligned_cols=202  Identities=13%  Similarity=0.169  Sum_probs=159.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+..|+.+++.++|||++.++..+.     ..||||++|+.+..+.. ...+++..+..++.|++.||.|||+. |+
T Consensus        59 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~LH~~-~i  136 (297)
T cd06656          59 KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVCRECLQALDFLHSN-QV  136 (297)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3467889999999999999999884433     34999999765544442 35689999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.++|+|||++.......    ...+++.|++||.+.+..++.++|||||||++|++++|..||.
T Consensus       137 ~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~  216 (297)
T cd06656         137 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (297)
T ss_pred             ccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999987654332    3457889999999998889999999999999999999999885


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......   ...............+...+..+.+++.+||+.+|++|||+.+++.+
T Consensus       217 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         217 NENPLR---ALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             CCCcch---heeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            432110   00000000111112345567789999999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.97  E-value=2.7e-31  Score=241.59  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=160.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...++.+|+.++++++|||++.+...+.     .+||||++++ +...+... ...+++..+..++.|++.||.|||+. 
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-  120 (256)
T cd08218          42 EREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR-  120 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3468999999999999999999885443     3499999864 55544432 34689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |++|+||+|+||+++.++.++|+|||++.......    ...+++.|+|||++.+...+.++|+|||||+++++++|..|
T Consensus       121 ~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~  200 (256)
T cd08218         121 KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHA  200 (256)
T ss_pred             CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999987654432    23578889999999988899999999999999999999998


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +..........    .+.. ......+...+.++.++|.+||+.+|++||++.+|+.+
T Consensus       201 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         201 FEAGNMKNLVL----KIIR-GSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             ccCCCHHHHHH----HHhc-CCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            75432211111    1111 11123455678889999999999999999999999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=9.4e-32  Score=248.70  Aligned_cols=206  Identities=16%  Similarity=0.272  Sum_probs=157.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++..++|||++.++..+.     .+||||++++++..+......+++..+..++.||+.||.|||+. |+
T Consensus        43 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i  121 (286)
T cd07846          43 VKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSH-NI  121 (286)
T ss_pred             hhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3567889999999999999998884443     44999999876665555556699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +|+||+|+||++++++.++|+|||++.......    ...++..|+|||++.+ ..++.++|||||||++|||++|..||
T Consensus       122 ~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~  201 (286)
T cd07846         122 IHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLF  201 (286)
T ss_pred             cccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999987654332    2346789999999876 44788999999999999999999887


Q ss_pred             CchhhHHhhh------ccc----------cc----ccccccc-----CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          166 PSHALDLIRD------RNI----------QT----LTDSCLE-----GQFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       166 ~~~~~~~~~~------~~~----------~~----~~~~~~~-----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ..........      ...          ..    ...+...     ....+.++..+.+++.+||+.+|++||++.+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il  281 (286)
T cd07846         202 PGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLL  281 (286)
T ss_pred             CCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHh
Confidence            5432110000      000          00    0000000     001234577899999999999999999999987


Q ss_pred             HH
Q 015733          221 TA  222 (401)
Q Consensus       221 ~~  222 (401)
                      ..
T Consensus       282 ~~  283 (286)
T cd07846         282 HH  283 (286)
T ss_pred             cC
Confidence            63

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=1.5e-31  Score=244.95  Aligned_cols=203  Identities=15%  Similarity=0.207  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|..|+.++++++|||++.++..+.     ..||||++|+.+..+..+..++++..+..++.|++.||.|||++ |++
T Consensus        47 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~-~i~  125 (268)
T cd06630          47 VEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHEN-QII  125 (268)
T ss_pred             HHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            478999999999999999999985444     34999999765444444556899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCC-CeEEecccCccccCCC--------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           92 YHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        92 H~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+||+|+||+++.++ .++|+|||.+......        ....++..|+|||.+.+..++.++||||+|+++|++++|.
T Consensus       126 H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~  205 (268)
T cd06630         126 HRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAK  205 (268)
T ss_pred             cCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCC
Confidence            999999999998776 5899999998765432        1235678999999998888899999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .||......... ...............+...+.++.+++.+||+.+|++|||+.+++.
T Consensus       206 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         206 PPWNAEKHSNHL-ALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CCCCCCCCcchH-HHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            987532211000 0111111112234456678889999999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.3e-31  Score=250.32  Aligned_cols=200  Identities=15%  Similarity=0.164  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHhhhC-CCeEEEeeeec--c---ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASMS-SFILLAVIFMF--Q---IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~~-h~niv~~~~~~--~---~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..|.+|+..|.++. |.+||+++.+.  +   ++||||-+-.|...+......++--.+..+..|++.|+.++|.. |||
T Consensus       404 ~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~-gIV  482 (677)
T KOG0596|consen  404 DGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQH-GIV  482 (677)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHh-cee
Confidence            46999999999995 67899998322  2   34899866666666655544444227888999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccC-----------ccCCCCcchhhHHH
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTG-----------RVTPESVMYSFGTL  154 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~-----------~~~~~~Dv~slG~~  154 (401)
                      |.||||.|+|+- .|.+||+|||.|......+      +.+||+.||+||.+...           +.++++||||+|||
T Consensus       483 HSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCI  561 (677)
T KOG0596|consen  483 HSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCI  561 (677)
T ss_pred             ecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhH
Confidence            999999999987 5789999999999876543      45799999999998642           36789999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHH-HHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGT-ELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||+|+.|+.||.... .  ....+..+.++...-+||..-.. ++.++++.||.+||.+|||+.+++++
T Consensus       562 LYqMvYgktPf~~~~-n--~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  562 LYQMVYGKTPFGQII-N--QIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             HHHHHhcCCchHHHH-H--HHHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            999999999875432 1  12334555666554455443222 39999999999999999999999873

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=2.4e-31  Score=253.66  Aligned_cols=202  Identities=14%  Similarity=0.185  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.+|+.++++++|||++++...+.           .+||||+++++...+...   +++..+..++.|++.||.|||
T Consensus        59 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH  135 (353)
T cd07850          59 AKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQMD---LDHERMSYLLYQMLCGIKHLH  135 (353)
T ss_pred             HHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccCCCHHHHHhhc---CCHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999998874321           459999998777765432   899999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      +. |++||||||+||+++.++.+||+|||+++......   ...++..|+|||.+.+..++.++|||||||++|+|++|+
T Consensus       136 ~~-gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~  214 (353)
T cd07850         136 SA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGT  214 (353)
T ss_pred             hC-CeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCC
Confidence            99 99999999999999999999999999998754432   345688999999999888999999999999999999999


Q ss_pred             CCCCchhhHHhhhcc---------------------------------ccccccccc----cCCCChHHHHHHHHHHHHh
Q 015733          163 HIPPSHALDLIRDRN---------------------------------IQTLTDSCL----EGQFSSDEGTELVRLASRC  205 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~---------------------------------~~~~~~~~~----~~~~~~~~~~~l~~li~~c  205 (401)
                      .||............                                 ...+.....    ....+...+..+.++|.+|
T Consensus       215 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  294 (353)
T cd07850         215 VLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKM  294 (353)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHH
Confidence            988643211000000                                 000000000    0001223567789999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTA  222 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+|||+.+++..
T Consensus       295 L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         295 LVIDPEKRISVDDALQH  311 (353)
T ss_pred             cCCChhhCcCHHHHhcC
Confidence            99999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=8.7e-32  Score=246.06  Aligned_cols=205  Identities=15%  Similarity=0.240  Sum_probs=159.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~   88 (401)
                      ..++|.+|+..+++++|||++.++..+.     .+|+||+++ ++...+.....++++..+..++.|++.||+|||+ . 
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~-  120 (265)
T cd06605          42 IQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH-  120 (265)
T ss_pred             HHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence            4567999999999999999988773332     349999995 4555544434789999999999999999999999 8 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |++|+||||+||+++.++.++|+|||.+......  ....++..|+|||.+.+..++.++||||||+++|+|++|..||.
T Consensus       121 ~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~  200 (265)
T cd06605         121 KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYP  200 (265)
T ss_pred             CeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999998764322  22567889999999998889999999999999999999999876


Q ss_pred             chhhHHh-hhccccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLI-RDRNIQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ....... ........... .....+.. .+.++.++|.+||..+|.+|||+.+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         201 PENDPPDGIFELLQYIVNE-PPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             ccccccccHHHHHHHHhcC-CCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            4311000 00001111111 11223333 67889999999999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=2.4e-31  Score=241.78  Aligned_cols=201  Identities=16%  Similarity=0.160  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      +...|.+|+.++++++|||++.+...+.     .+||||++|+ +.+.+... ...+++..+..++.|++.||.|||++ 
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-  120 (256)
T cd08220          42 ERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK-  120 (256)
T ss_pred             HHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            4568999999999999999998874332     4499999875 44444332 45689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCC-CeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |++|+||+|+||+++.++ .+||+|||++.......   ...++..|+|||.+.+...+.++||||||+++|+|++|..|
T Consensus       121 ~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~  200 (256)
T cd08220         121 LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRA  200 (256)
T ss_pred             CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCC
Confidence            999999999999998654 57999999988765432   24578899999999988889999999999999999999998


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |............    .. .....++...+..+.+++.+||+.+|++|||+.+++..
T Consensus       201 ~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         201 FEAANLPALVLKI----MS-GTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             cccCchHHHHHHH----Hh-cCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            7554222111111    11 11223455678889999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=3e-31  Score=244.95  Aligned_cols=200  Identities=12%  Similarity=0.149  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----------ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----------IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----------~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ..++..|+.++.++ +|||+++++..+.           ..+|||++++ +...+.. ....+++..+..++.||+.||.
T Consensus        56 ~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~  135 (282)
T cd06636          56 EEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLA  135 (282)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence            45788899999998 6999999884431           3599999864 4444433 2456899999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccc-----cCccCCCCcchhhHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGT  153 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~  153 (401)
                      |||+. |++|+||+|+||+++.++.++|+|||++.....    .....+++.|+|||.+.     ...++.++|||||||
T Consensus       136 ~LH~~-~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~  214 (282)
T cd06636         136 HLHAH-KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGI  214 (282)
T ss_pred             HHHHC-CcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHH
Confidence            99999 999999999999999999999999999876432    22346788999999886     245788999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ++|||++|..||......    .....+............++..+.++|.+||+.||.+|||+.+++.
T Consensus       215 ~l~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         215 TAIEMAEGAPPLCDMHPM----RALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             HHHHHHhCCCCccccCHH----hhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            999999999987543211    0011111111111122346788999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=1.7e-31  Score=244.68  Aligned_cols=187  Identities=13%  Similarity=0.179  Sum_probs=149.9

Q ss_pred             CCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECC
Q 015733           31 SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDD  104 (401)
Q Consensus        31 ~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~  104 (401)
                      +|||++.++..+.     ..||||++|+ +...+. ...++++..+..++.|++.||.|||+. |++||||||+||+++.
T Consensus        67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~  144 (267)
T PHA03390         67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLK-KEGKLSEAEVKKIIRQLVEALNDLHKH-NIIHNDIKLENVLYDR  144 (267)
T ss_pred             cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEeC
Confidence            7999999885543     3499999865 544443 445899999999999999999999999 9999999999999999


Q ss_pred             CC-CeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccccccc
Q 015733          105 DV-NPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTD  183 (401)
Q Consensus       105 ~~-~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~  183 (401)
                      ++ .++|+|||++..........++..|+|||++.+..++.++||||||+++|+|++|..||..................
T Consensus       145 ~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~  224 (267)
T PHA03390        145 AKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQ  224 (267)
T ss_pred             CCCeEEEecCccceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhc
Confidence            98 99999999998877666677899999999999888999999999999999999999998643221111111111111


Q ss_pred             ccccCCCChHHHHHHHHHHHHhcccCCCCCCC-HHHHHH
Q 015733          184 SCLEGQFSSDEGTELVRLASRCLQYEPRERPN-PRSLVT  221 (401)
Q Consensus       184 ~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-~~~vl~  221 (401)
                        .....+...+..+.++|.+||+.+|.+||+ ++++++
T Consensus       225 --~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        225 --KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             --ccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence              111334567889999999999999999996 688875

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=2.5e-31  Score=251.43  Aligned_cols=203  Identities=14%  Similarity=0.154  Sum_probs=155.7

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .....|..|+.++..++|+|++.+...++     .+||||++|+ +...+......+++..+..++.||+.||.|||+. 
T Consensus        43 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~-  121 (332)
T cd05623          43 AETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQL-  121 (332)
T ss_pred             hHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            34456888999999999999999885444     3499999865 5455544456799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCcccccc-----CccCCCCcchhhHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el  158 (401)
                      ||+||||||+|||++.++.+||+|||++......     ....||+.|+|||++.+     ..++.++|||||||++|||
T Consensus       122 ~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~el  201 (332)
T cd05623         122 HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEM  201 (332)
T ss_pred             CeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHH
Confidence            9999999999999999999999999998754322     22468999999999863     4578999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCC---ChHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF---SSDEGTELVRLASRCLQYEPRE--RPNPRSLVTA  222 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~  222 (401)
                      ++|+.||...........    +........+   +..++.++.+|+.+|+..++.+  |+++.+++++
T Consensus       202 l~g~~Pf~~~~~~~~~~~----i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         202 LYGETPFYAESLVETYGK----IMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             hcCCCCCCCCCHHHHHHH----HhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            999999865432211111    1111111112   2356788999999988654444  6899999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.97  E-value=2.8e-31  Score=241.45  Aligned_cols=202  Identities=21%  Similarity=0.320  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCC-CCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQP-MKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~-l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....|..|+.++..++|+|++.++..+.     ..+|||++++ +...+...... +++..+..++.|++.||.|||+. 
T Consensus        44 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~-  122 (258)
T smart00219       44 QIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK-  122 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC-
Confidence            4578999999999999999999884333     3499999864 54444433333 99999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      |++|+||||+||++++++.++|+|||++........     ..+++.|++||.+.+..++.++||||+|+++++|++ |.
T Consensus       123 ~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~  202 (258)
T smart00219      123 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGE  202 (258)
T ss_pred             CeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999887654321     125678999999988889999999999999999998 66


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .||...........     +........+...+.++.+++.+||+.+|.+|||+.++++.|
T Consensus       203 ~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      203 SPYPGMSNEEVLEY-----LKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CCCCCCCHHHHHHH-----HhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            66543221111111     111112233455788899999999999999999999998754

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=3.5e-31  Score=245.03  Aligned_cols=200  Identities=15%  Similarity=0.179  Sum_probs=156.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.+++.++|||++.++..+.     ..|+||++|+.+..+... .++++..+..++.|++.||+|||+. |++
T Consensus        60 ~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~-~i~  137 (285)
T cd06648          60 RELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH-TRMNEEQIATVCLAVLKALSFLHAQ-GVI  137 (285)
T ss_pred             HHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            456889999999999999999885433     349999986544444333 5689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||+|+||+++.++.++|+|||.+......    ....+++.|+|||.+.+..++.++|||||||++|+|++|..||..
T Consensus       138 H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~  217 (285)
T cd06648         138 HRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFN  217 (285)
T ss_pred             cCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcC
Confidence            9999999999999999999999987654332    234578899999999888899999999999999999999998754


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ......... ......+.  ...+...+..+.+++.+||+.+|.+|||+.+++.
T Consensus       218 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         218 EPPLQAMKR-IRDNLPPK--LKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             CCHHHHHHH-HHhcCCCC--CcccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            321111100 01100001  1112336678999999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.97  E-value=2e-31  Score=242.48  Aligned_cols=201  Identities=15%  Similarity=0.152  Sum_probs=159.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||++.+.....     .+|+||++|+.+..+.....++++..+..++.|++.||.|||+. |+
T Consensus        45 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  123 (258)
T cd06632          45 AVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDR-NT  123 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3467999999999999999998884433     34999999754444444456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +|+||+|+||+++.++.+||+|||++......   ....++..|++||.+.... ++.++|+||||+++|+|++|+.||.
T Consensus       124 ~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~  203 (258)
T cd06632         124 VHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWS  203 (258)
T ss_pred             ccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999998765433   2445788999999987766 8999999999999999999999975


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .......    ............++...+..+.+++.+||+.+|++||++.+++.
T Consensus       204 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         204 QLEGVAA----VFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             cCcHHHH----HHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            4321110    01111101122345567788999999999999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.7e-31  Score=265.17  Aligned_cols=205  Identities=16%  Similarity=0.176  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCC----CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE----TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~----~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...|.+|+.++.+++||||+.++..+.     ..|+|++.+++...+...    ........+..++.||+.||.|||++
T Consensus       207 ~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~  286 (501)
T PHA03210        207 AIQLENEILALGRLNHENILKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK  286 (501)
T ss_pred             HHHHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence            456889999999999999999884443     348888877665544322    22234567788999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                       |||||||||+|||++.++.+||+|||+++......     ...||+.|+|||++.+..++.++|||||||++|||++|.
T Consensus       287 -gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~  365 (501)
T PHA03210        287 -KLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHD  365 (501)
T ss_pred             -CeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCC
Confidence             99999999999999999999999999998754321     346899999999999888999999999999999999998


Q ss_pred             CCCCchhh-----HHhhhcc-----cccc----------cccc-c---cCCCC-----hHHHHHHHHHHHHhcccCCCCC
Q 015733          163 HIPPSHAL-----DLIRDRN-----IQTL----------TDSC-L---EGQFS-----SDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       163 ~p~~~~~~-----~~~~~~~-----~~~~----------~~~~-~---~~~~~-----~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      .+|.....     .......     ....          +... .   ...++     ...+.++.++|.+||+.||.+|
T Consensus       366 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~R  445 (501)
T PHA03210        366 FCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLR  445 (501)
T ss_pred             CCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccC
Confidence            65432110     0000000     0000          0000 0   00000     1234567888999999999999


Q ss_pred             CCHHHHHHH
Q 015733          214 PNPRSLVTA  222 (401)
Q Consensus       214 ps~~~vl~~  222 (401)
                      ||+.|++.+
T Consensus       446 psa~elL~h  454 (501)
T PHA03210        446 PGAAELLAL  454 (501)
T ss_pred             cCHHHHhhC
Confidence            999999874

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=232.91  Aligned_cols=206  Identities=16%  Similarity=0.133  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeeccc---------cEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQI---------PSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~~---------~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      .+..-.+|++.--.- .|||||.+...+..         .|||+|+|| |.+.+.. +...+++.++-.|+.||+.|+.|
T Consensus        97 Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~  176 (400)
T KOG0604|consen   97 DSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRY  176 (400)
T ss_pred             cCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHH
Confidence            345566787765444 59999998844441         299999976 4444433 45679999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  157 (401)
                      ||+. +|.||||||+|+|.+.   |-.+||+|||+++.....   .+.+-||.|.|||++...+|+...|+||+||++|-
T Consensus       177 lH~~-nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYI  255 (400)
T KOG0604|consen  177 LHSM-NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYI  255 (400)
T ss_pred             HHhc-chhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHH
Confidence            9999 9999999999999964   456899999999987643   35577999999999999999999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhhccccccccccccCCCCh----HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          158 LLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSS----DEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |++|.+||++.-...+..+-..++....  -.||.    .++....++|+.+|.-+|.+|.|+.+++..-+
T Consensus       256 lLCGyPPFYS~hg~aispgMk~rI~~gq--y~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpw  324 (400)
T KOG0604|consen  256 LLCGYPPFYSNHGLAISPGMKRRIRTGQ--YEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPW  324 (400)
T ss_pred             hhcCCCcccccCCccCChhHHhHhhccC--ccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCch
Confidence            9999999976422212212111211111  12343    46888999999999999999999999987543

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.97  E-value=6e-31  Score=243.38  Aligned_cols=203  Identities=11%  Similarity=0.079  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeec----------cccEeeecCCcccc-ccc---CCCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMF----------QIPSYEFHCLTFSN-NFS---GETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~----------~~~v~Ey~~~~l~~-~~~---~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+..|+.++..+ +|||++.+...+          -.+||||++|+.+. .+.   .....+++..+..++.|++.||
T Consensus        58 ~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l  137 (286)
T cd06638          58 DEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL  137 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHH
Confidence            36788899999999 699999987432          14599999975443 322   2346789999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhhH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFG  152 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG  152 (401)
                      .|||+. +++||||||+||+++.++.++|+|||+++.....    ....|++.|+|||++..     ..++.++||||||
T Consensus       138 ~~lH~~-~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG  216 (286)
T cd06638         138 QHLHVN-KTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLG  216 (286)
T ss_pred             HHHHhC-CccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHH
Confidence            999999 9999999999999999999999999998765432    23457899999999853     3478899999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |++|||++|+.|+.......... ......  ......+..++..+.++|.+||+.+|++|||+.+|++.+
T Consensus       217 vi~~el~~g~~p~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         217 ITAIELGDGDPPLADLHPMRALF-KIPRNP--PPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             HHHHHHhcCCCCCCCCchhHHHh-hccccC--CCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            99999999999875432110000 000000  001112334567899999999999999999999998754

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.97  E-value=2.1e-31  Score=247.96  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=158.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+..+..++|||++.++..+.     ..||||++++.+..+.. ...+++..+..++.|++.||.|||+. |+
T Consensus        61 ~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~-~i  138 (297)
T cd06659          61 RRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS-QTRLNEEQIATVCESVLQALCYLHSQ-GV  138 (297)
T ss_pred             hHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3567889999999999999888774332     34999999765544442 35689999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.+||+|||++......    ....++..|+|||.+.+..++.++|||||||++|||++|..||.
T Consensus       139 vH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  218 (297)
T cd06659         139 IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYF  218 (297)
T ss_pred             ecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999998754332    23467899999999998889999999999999999999999876


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ......... ........  ....+...+..+.+++.+||+.+|.+||++.++++.-.
T Consensus       219 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~  273 (297)
T cd06659         219 SDSPVQAMK-RLRDSPPP--KLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPF  273 (297)
T ss_pred             CCCHHHHHH-HHhccCCC--CccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChh
Confidence            432111000 00000000  11123345677999999999999999999999998543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.6e-31  Score=248.55  Aligned_cols=201  Identities=16%  Similarity=0.158  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|..|+.++..++||||+.++..+.     .+||||+.|+ +...+.. ....+++..+..++.|++.||.|||+. 
T Consensus        44 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-  122 (316)
T cd05574          44 KVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL-  122 (316)
T ss_pred             HHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC-
Confidence            4467899999999999999999884433     3499999865 4444433 246799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC---------------------------------ccccccccCCcc
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---------------------------------SYSTNLAFTPPE  135 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---------------------------------~~~~~~~y~aPE  135 (401)
                      |++|+||||+||+++.++.++|+|||++.......                                 ...|+..|+|||
T Consensus       123 ~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE  202 (316)
T cd05574         123 GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPE  202 (316)
T ss_pred             CeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHH
Confidence            99999999999999999999999999877543211                                 224678899999


Q ss_pred             ccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          136 YLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       136 ~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ++.+..++.++||||||+++|+|++|..||........    ...+.............+..+.+++.+||..+|.+|||
T Consensus       203 ~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s  278 (316)
T cd05574         203 VISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET----FSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLG  278 (316)
T ss_pred             HHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH----HHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCC
Confidence            99988899999999999999999999999865432211    11111111111112226788999999999999999999


Q ss_pred             ----HHHHHH
Q 015733          216 ----PRSLVT  221 (401)
Q Consensus       216 ----~~~vl~  221 (401)
                          +.+++.
T Consensus       279 ~~~~~~~ll~  288 (316)
T cd05574         279 SKRGAAEIKQ  288 (316)
T ss_pred             chhhHHHHHc
Confidence                777766

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=2.4e-31  Score=245.91  Aligned_cols=206  Identities=15%  Similarity=0.208  Sum_probs=157.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++++++|||++.+...+.     ..||||+.+++...+.....++++..+..++.||+.||.|||+. |+
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  120 (286)
T cd07832          42 IPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHAN-GI  120 (286)
T ss_pred             hhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3568999999999999999998884333     34999996566666655567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +|+||||+||+++.++.++|+|||++.......     ...++..|+|||.+.+. .++.++||||+|+++|||+||.++
T Consensus       121 ~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~  200 (286)
T cd07832         121 MHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPL  200 (286)
T ss_pred             ecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcC
Confidence            999999999999999999999999988754432     34578899999998764 468999999999999999999776


Q ss_pred             CCchhhHHhhhccc--------------------ccccccccc----CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          165 PPSHALDLIRDRNI--------------------QTLTDSCLE----GQFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       165 ~~~~~~~~~~~~~~--------------------~~~~~~~~~----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      |.............                    ..+..+...    ....+..+..+.+++.+||+.+|.+|||+++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l  280 (286)
T cd07832         201 FPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEAL  280 (286)
T ss_pred             cCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHh
Confidence            64432110000000                    000000000    011123468899999999999999999999998


Q ss_pred             HH
Q 015733          221 TA  222 (401)
Q Consensus       221 ~~  222 (401)
                      .+
T Consensus       281 ~h  282 (286)
T cd07832         281 RH  282 (286)
T ss_pred             hC
Confidence            64

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=1.7e-31  Score=246.82  Aligned_cols=205  Identities=15%  Similarity=0.245  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++++++|||++++...+.     ..||||+.+++...+.. ....+++..+..++.|++.||+|||+. |+
T Consensus        43 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-~i  121 (284)
T cd07860          43 PSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH-RV  121 (284)
T ss_pred             chHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            357899999999999999999884433     34999998776665543 346789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||+|+||+++.++.+||+|||++......    ....+++.|+|||.+.+.. ++.++|||||||++|+|+||+.||
T Consensus       122 ~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~  201 (284)
T cd07860         122 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALF  201 (284)
T ss_pred             ecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            99999999999999999999999998765432    1234578899999987644 688999999999999999999988


Q ss_pred             CchhhHHhhhcccc--------------cc------cccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQ--------------TL------TDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~--------------~~------~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..............              .+      ......   .......+.++.++|.+||+.||.+|||+.+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         202 PGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             CCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence            65321110000000              00      000000   00112356778999999999999999999998753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=6.3e-31  Score=240.13  Aligned_cols=202  Identities=15%  Similarity=0.194  Sum_probs=158.2

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+...|..|+.+++.++|+||+.++....     ..|+||++++.+..+......+++..+..++.|++.||.|||+. |
T Consensus        41 ~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-~  119 (264)
T cd06626          41 KTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH-G  119 (264)
T ss_pred             HHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHC-C
Confidence            45688999999999999999998884432     34999999665444444556689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccCc---cCCCCcchhhHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTGR---VTPESVMYSFGTLLLDL  158 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~~---~~~~~Dv~slG~~l~el  158 (401)
                      ++|+||+|+||++++++.+||+|||++.......        ...++..|++||.+.+..   .+.++||||||+++|++
T Consensus       120 i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l  199 (264)
T cd06626         120 IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEM  199 (264)
T ss_pred             cccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHH
Confidence            9999999999999999999999999988754322        234678999999998765   88999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCCChH--HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSD--EGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ++|+.||...............    .....+|..  .+..+.+++.+||+.+|.+|||+.+++.
T Consensus       200 ~~g~~pf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         200 ATGKRPWSELDNEFQIMFHVGA----GHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             HhCCCCccCCcchHHHHHHHhc----CCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            9999998543111100000000    111223333  3778899999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.97  E-value=6.2e-31  Score=241.10  Aligned_cols=203  Identities=14%  Similarity=0.228  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHhh-hCCCeEEEeeeecc-----ccEeeecCCc-ccccc---cCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           18 TYFIVSLVLIAS-MSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNF---SGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        18 ~~f~~E~~~l~~-~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~---~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+++.|+.++.+ ++|||++.+...+.     .+||||++|+ +...+   ......+++..++.++.|++.||.|||+.
T Consensus        53 ~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  132 (269)
T cd08528          53 GDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE  132 (269)
T ss_pred             HHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC
Confidence            568889988865 79999999884333     3499999864 43333   23456799999999999999999999974


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      .+++|+||+|+||+++.++.++|+|||.+......   ....++..|++||.+.+..++.++||||||+++|+|++|..|
T Consensus       133 ~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p  212 (269)
T cd08528         133 KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPP  212 (269)
T ss_pred             CceeecCCCHHHEEECCCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence            38999999999999999999999999998875543   234578899999999988899999999999999999999988


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |...........    +.............+..+.++|.+||+.||++||++.++...+.
T Consensus       213 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         213 FYSTNMLSLATK----IVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             ccccCHHHHHHH----HhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            754322211111    11111111112245678999999999999999999999988764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=8.7e-31  Score=242.60  Aligned_cols=207  Identities=15%  Similarity=0.215  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccc---cCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNF---SGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~---~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.|.+|+.++++++||||+.+...+.       .+||||++|+ +...+   ......+++..+..++.|++.||.||
T Consensus        42 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~l  121 (287)
T cd06621          42 LQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYL  121 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3577999999999999999999874321       3599999865 43332   22456689999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. |++|+||+|+||+++.++.++|+|||++......  ....++..|++||.+.+..++.++|||||||++|+|++|.
T Consensus       122 H~~-~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~  200 (287)
T cd06621         122 HSR-KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNR  200 (287)
T ss_pred             HHC-CcccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999998764432  2345678999999999888999999999999999999999


Q ss_pred             CCCCchhh----HHhhhccccccccccccCCCC--hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          163 HIPPSHAL----DLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       163 ~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .||.....    .............+.+....+  ...+..+.+++.+||+.+|++|||+.+++..-
T Consensus       201 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~  267 (287)
T cd06621         201 FPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHP  267 (287)
T ss_pred             CCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCc
Confidence            98764311    000000000000011111111  23567899999999999999999999998743

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.7e-31  Score=241.38  Aligned_cols=200  Identities=14%  Similarity=0.143  Sum_probs=153.6

Q ss_pred             HHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           19 YFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        19 ~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+..|.. .....+|||++.++..+.     ..||||++|+.+..+.....++++..+..++.|++.||.|||+. +++|
T Consensus        42 ~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~-~i~H  120 (260)
T cd05611          42 NVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQR-GIIH  120 (260)
T ss_pred             HHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ceec
Confidence            3444544 445668999999884443     35999999765554544556799999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL  172 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~  172 (401)
                      |||+|+||+++.++.++|+|||++..........+++.|++||.+.+..++.++||||||+++|+|+||..||.......
T Consensus       121 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~  200 (260)
T cd05611         121 RDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDA  200 (260)
T ss_pred             CCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            99999999999999999999999887665556678899999999988778999999999999999999999986532221


Q ss_pred             hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .........  .......+..++..+.+++.+||+.+|++|||+.++.+
T Consensus       201 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~  247 (260)
T cd05611         201 VFDNILSRR--INWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQE  247 (260)
T ss_pred             HHHHHHhcc--cCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHH
Confidence            111100000  01111223356788999999999999999997654443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.9e-31  Score=249.96  Aligned_cols=205  Identities=14%  Similarity=0.126  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|.+|+.++..++||||+.+...+.     .+||||++|+ +...+......+++..+..++.||+.||+|||++ |
T Consensus        44 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  122 (331)
T cd05597          44 ETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQL-G  122 (331)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3456888999999999999998874443     3499999865 4444443456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCcccccc-----CccCCCCcchhhHHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el~  159 (401)
                      |+||||||+|||++.++.+||+|||++.......     ...||+.|+|||++..     ..++.++|||||||++|+|+
T Consensus       123 ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~  202 (331)
T cd05597         123 YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEML  202 (331)
T ss_pred             eEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHh
Confidence            9999999999999999999999999987644322     2358999999999873     45788999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCC--CCCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPR--ERPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~--~Rps~~~vl~~  222 (401)
                      +|+.||................ ............+..+.++|.+||..++.  .||++.+++.+
T Consensus       203 ~g~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         203 YGETPFYAESLVETYGKIMNHK-EHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             hCCCCCCCCCHHHHHHHHHcCC-CcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            9999986543221111111100 00000111223677899999998865443  37899999875

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=1.5e-31  Score=243.73  Aligned_cols=200  Identities=17%  Similarity=0.198  Sum_probs=160.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++.+++|||++.++..+.     ..|+||+.|+.+..+.....++++..+..++.|++.||.|||+. |++
T Consensus        44 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~-~i~  122 (258)
T cd05578          44 VRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSK-GII  122 (258)
T ss_pred             HHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            468899999999999999998874433     34999999765555554456899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      |+||+|+||++++++.++|+|||++......   ....++..|++||.+.+..++.++|+||||+++|+|++|..|+...
T Consensus       123 h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  202 (258)
T cd05578         123 HRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGH  202 (258)
T ss_pred             ccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999999998875544   2345778999999998888999999999999999999999997654


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH--HHHH
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP--RSLV  220 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~--~~vl  220 (401)
                      .... . ......... .....|...+..+.++|.+||+.||.+||++  .+++
T Consensus       203 ~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         203 SRTI-R-DQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             CccH-H-HHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            3210 0 000011110 2234566678899999999999999999999  6554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=6.5e-31  Score=243.87  Aligned_cols=203  Identities=13%  Similarity=0.163  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ..+.+|+.++..++|+|++.+...+.     ..||||++++++..+......+++..+..++.|++.||.|||+. |++|
T Consensus        48 ~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H  126 (291)
T cd07870          48 FTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQ-HILH  126 (291)
T ss_pred             HHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence            46789999999999999998885443     34999999887776665556788999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||+||+++.++.++|+|||+++.....    ....+++.|+|||.+.+. .++.++|||||||++|+|+||..||..
T Consensus       127 ~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~  206 (291)
T cd07870         127 RDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPG  206 (291)
T ss_pred             CCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999998764322    223468899999998763 578899999999999999999998754


Q ss_pred             hhhHHhh--h----------c------cccccccccccCCCC---------hHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          168 HALDLIR--D----------R------NIQTLTDSCLEGQFS---------SDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       168 ~~~~~~~--~----------~------~~~~~~~~~~~~~~~---------~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      .......  .          .      ..............+         ...+..+.+++.+|+..||.+|||+.+++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l  286 (291)
T cd07870         207 VSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDAL  286 (291)
T ss_pred             chhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHh
Confidence            3211000  0          0      000000000000000         01256788999999999999999999987


Q ss_pred             H
Q 015733          221 T  221 (401)
Q Consensus       221 ~  221 (401)
                      .
T Consensus       287 ~  287 (291)
T cd07870         287 L  287 (291)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=3.6e-31  Score=244.18  Aligned_cols=200  Identities=16%  Similarity=0.182  Sum_probs=152.6

Q ss_pred             HHHHHHHHH---hhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           19 YFIVSLVLI---ASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        19 ~f~~E~~~l---~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+|..++   ...+|||++.+...+.     ..||||++|+.+..+......+++..+..++.|++.||.|||+. ++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~-~i  118 (279)
T cd05633          40 LALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNR-FV  118 (279)
T ss_pred             HHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            345554433   3347899988774332     35999999765555544556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+||+++.++.++|+|||++......  ....|+..|+|||.+.+ ..++.++|||||||++|+|++|..||..
T Consensus       119 vH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  198 (279)
T cd05633         119 VYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQ  198 (279)
T ss_pred             CCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCC
Confidence            99999999999999999999999998754332  23468899999999874 4588999999999999999999999854


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      .......  ...... .......+...+.++.++|.+||+.||.+||     |+.+++++
T Consensus       199 ~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         199 HKTKDKH--EIDRMT-LTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             CCCcCHH--HHHHHh-hcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            3211000  011110 1112345666788999999999999999999     59888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=7.7e-31  Score=243.37  Aligned_cols=202  Identities=13%  Similarity=0.076  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeec----------cccEeeecCCccc-cccc---CCCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMF----------QIPSYEFHCLTFS-NNFS---GETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~----------~~~v~Ey~~~~l~-~~~~---~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+..|+.++.++ +|||++.+...+          ..+||||++|+.+ ..+.   .....+++..++.++.|++.||
T Consensus        62 ~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al  141 (291)
T cd06639          62 DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGL  141 (291)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Confidence            46778899999999 799999987432          1359999987544 3332   2456789999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-----ccCCCCcchhhH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-----RVTPESVMYSFG  152 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-----~~~~~~Dv~slG  152 (401)
                      .|||+. |++||||||+||+++.++.+||+|||++......    ....++..|+|||.+...     .++.++||||||
T Consensus       142 ~~lH~~-~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG  220 (291)
T cd06639         142 QHLHNN-RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLG  220 (291)
T ss_pred             HHHHhC-CeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHH
Confidence            999999 9999999999999999999999999998764432    234578899999998653     268899999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |++|||++|+.||........... ...  ........+...+..+.++|.+||+.+|++|||+.+++++
T Consensus       221 vi~~el~~g~~p~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         221 ITAIELGDGDPPLFDMHPVKTLFK-IPR--NPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             HHHHHHhhCCCCCCCCcHHHHHHH-Hhc--CCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            999999999998765321110000 000  0000111234456789999999999999999999999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=6.8e-31  Score=239.81  Aligned_cols=204  Identities=16%  Similarity=0.227  Sum_probs=161.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~~   89 (401)
                      ...+|..|+..+.+++|||++.+...+.     ..||||++++.+..+.....++++..+..++.|++.||.|||+ . |
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~-~  120 (264)
T cd06623          42 FRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKR-H  120 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccC-C
Confidence            4678999999999999999999884433     3499999965444444444789999999999999999999999 8 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ++||||+|+||+++.++.++|+|||++.......    ...++..|+|||.+.+..++.++||||||+++|+|+||..|+
T Consensus       121 ~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~  200 (264)
T cd06623         121 IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPF  200 (264)
T ss_pred             CccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999988765433    235678999999999888999999999999999999999987


Q ss_pred             CchhhHHhhhccccccccccccCCCChH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSD-EGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ........ ......+... .....+.. ++..+.++|.+||+.+|++|||+.++++.
T Consensus       201 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         201 LPPGQPSF-FELMQAICDG-PPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             ccccccCH-HHHHHHHhcC-CCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            55421000 0001111111 11223444 77899999999999999999999999873

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=5.2e-31  Score=243.37  Aligned_cols=201  Identities=16%  Similarity=0.251  Sum_probs=152.9

Q ss_pred             HHHHHHHHH-HhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC---CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           18 TYFIVSLVL-IASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG---ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        18 ~~f~~E~~~-l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .++..|+.. ++..+|||+++++..+.     .+||||++|++...+..   ....+++..++.++.|++.||.|||++.
T Consensus        44 ~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  123 (283)
T cd06617          44 KRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL  123 (283)
T ss_pred             HHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            456666665 56678999999884333     34999999876555432   3467999999999999999999999866


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc----CccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT----GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~----~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +++||||||+||+++.++.+||+|||++......   ....++..|+|||.+.+    ..++.++|+|||||++|+|++|
T Consensus       124 ~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g  203 (283)
T cd06617         124 SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATG  203 (283)
T ss_pred             CeecCCCCHHHEEECCCCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhC
Confidence            8999999999999999999999999998865432   22457889999998865    3468899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCC-hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFS-SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||.......   ......... ....++ ..++.++.++|.+||..+|.+||++.+++..
T Consensus       204 ~~p~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         204 RFPYDSWKTPF---QQLKQVVEE-PSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             CCCCCccccCH---HHHHHHHhc-CCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            99875422110   011111111 111222 2467789999999999999999999999873

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PTZ00284 protein kinase; Provisional

Probab=99.97  E-value=5.2e-31  Score=260.40  Aligned_cols=205  Identities=16%  Similarity=0.192  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHhhhCCCe------EEEeeeecc------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFI------LLAVIFMFQ------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~n------iv~~~~~~~------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..++..|+.++..+.|.+      ++.+...+.      .+|||++.+++...+. ..+.+++..+..++.||+.||.||
T Consensus       169 ~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~g~~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~yL  247 (467)
T PTZ00284        169 TRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKYGPCLLDWIM-KHGPFSHRHLAQIIFQTGVALDYF  247 (467)
T ss_pred             HHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEeccCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence            345666777777776654      555542222      3488988777776654 346799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCC----------------CeEEecccCccccCCC-CccccccccCCccccccCccCCCCc
Q 015733           85 TSKERALYHDLNAYRIVFDDDV----------------NPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~----------------~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      |++.|||||||||+|||++.++                .+||+|||.+...... ....||+.|+|||++.+..++.++|
T Consensus       248 H~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~D  327 (467)
T PTZ00284        248 HTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTD  327 (467)
T ss_pred             HhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHH
Confidence            9733999999999999998765                4999999987654332 4567899999999999989999999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhhh---ccc----------------ccccccc--ccCCC-C--------------
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIRD---RNI----------------QTLTDSC--LEGQF-S--------------  191 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~~---~~~----------------~~~~~~~--~~~~~-~--------------  191 (401)
                      ||||||++|||+||+.||..........   ...                ..+....  +.... +              
T Consensus       328 iwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (467)
T PTZ00284        328 MWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVRE  407 (467)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhh
Confidence            9999999999999999986532110000   000                0000000  00000 0              


Q ss_pred             hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          192 SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       192 ~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......+.+||.+||+.||.+|||+.+++.+
T Consensus       408 ~~~~~~~~dli~~mL~~dP~~R~ta~e~L~H  438 (467)
T PTZ00284        408 VIRDDLLCDLIYGLLHYDRQKRLNARQMTTH  438 (467)
T ss_pred             hhchHHHHHHHHHhCCcChhhCCCHHHHhcC
Confidence            0123567899999999999999999999974

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.6e-31  Score=241.27  Aligned_cols=200  Identities=13%  Similarity=0.136  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----------ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----------IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----------~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~   80 (401)
                      .+.|..|+.++.++ .|||++.++..+.           ..||||++++ +.+.+..   .+..+++..+..++.|++.|
T Consensus        46 ~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~a  125 (275)
T cd06608          46 EEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRG  125 (275)
T ss_pred             HHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999 6999999884431           3599999975 4333322   24679999999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhh
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSF  151 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~sl  151 (401)
                      |.|||+. |++|+||+|+||+++.++.++|+|||++......    ....++..|+|||.+..     ..++.++|||||
T Consensus       126 l~~lH~~-~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  204 (275)
T cd06608         126 LAYLHEN-KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSL  204 (275)
T ss_pred             HHHHhcC-CcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHh
Confidence            9999999 9999999999999999999999999998764432    23457889999998754     346789999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccccc-cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDS-CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ||++|+++||..||........    ...+... ......+...+..+.++|.+||..||++|||+.+++.
T Consensus       205 G~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         205 GITAIELADGKPPLCDMHPMRA----LFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             HHHHHHHHhCCCCccccchHHH----HHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            9999999999999854321110    1111110 1011123346778999999999999999999999976

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=5.2e-31  Score=249.10  Aligned_cols=202  Identities=15%  Similarity=0.154  Sum_probs=154.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|..|+.++..++|+||+.+...+.     .+||||++|+ +...+......+++..+..++.|++.||+|||++ |
T Consensus        44 ~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~-~  122 (331)
T cd05624          44 ETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQL-H  122 (331)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3455888999999999999999885444     3499999865 4444444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCcccccc-----CccCCCCcchhhHHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el~  159 (401)
                      |+||||||+|||++.++.+||+|||++.......     ...||+.|+|||++.+     +.++.++|||||||++|+|+
T Consensus       123 iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell  202 (331)
T cd05624         123 YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEML  202 (331)
T ss_pred             eeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhh
Confidence            9999999999999999999999999987654322     2468999999999875     46788999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCC---ChHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQF---SSDEGTELVRLASRCLQYEPRE--RPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~  222 (401)
                      +|+.||..........    .+.....+..+   ...++.++.+++.+||..++.+  |+++.+++.+
T Consensus       203 ~g~~Pf~~~~~~~~~~----~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         203 YGETPFYAESLVETYG----KIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             hCCCCccCCCHHHHHH----HHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            9999986543221111    11111111112   2345788999999999876544  4678888764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=1.1e-30  Score=241.61  Aligned_cols=203  Identities=14%  Similarity=0.184  Sum_probs=158.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|..|+..+..++|+|++.++..+.     ..|+||++| ++.+.+......+++..+..++.|++.||.|||+. |+
T Consensus        59 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~-gi  137 (286)
T cd06614          59 KELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ-NV  137 (286)
T ss_pred             HHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            568999999999999999999884433     349999995 45555544334899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +|+||+|+||+++.++.++|+|||++......    ....++..|++||.+.+..++.++|||||||++|+|++|..|+.
T Consensus       138 ~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~  217 (286)
T cd06614         138 IHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYL  217 (286)
T ss_pred             eeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999987754432    23346789999999988889999999999999999999998875


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ..............   .......+..++..+.++|.+||+.+|.+|||+.+|+...
T Consensus       218 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  271 (286)
T cd06614         218 REPPLRALFLITTK---GIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHP  271 (286)
T ss_pred             CCCHHHHHHHHHhc---CCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhCh
Confidence            43211100000000   0001112233678899999999999999999999998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=1.2e-30  Score=240.46  Aligned_cols=199  Identities=14%  Similarity=0.198  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++.+++|||++.++..+.     ..||||++++.+..+.. ...+++..+..++.|++.|+.|||+. |++
T Consensus        46 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~-~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~  123 (277)
T cd06641          46 IEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSE-KKI  123 (277)
T ss_pred             HHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHccC-Cee
Confidence            357889999999999999999884333     34999999764444432 35689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |+||+|+||+++.++.++|+|||++......    ....++..|++||.+.+...+.++|||||||++|+|++|..|+..
T Consensus       124 h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  203 (277)
T cd06641         124 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSE  203 (277)
T ss_pred             cCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999998765432    224578889999999888889999999999999999999988754


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......    .. +........+..++.++.+++.+||+.+|.+||++.+++.+
T Consensus       204 ~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         204 LHPMKVL----FL-IPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             cchHHHH----HH-HhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            3211111    01 11111223445667889999999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=1.1e-30  Score=245.08  Aligned_cols=206  Identities=16%  Similarity=0.201  Sum_probs=154.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      +.+.+..|+.+++.++||||+.++..+.     ..+|||++++ +...+.. ....+++..+..++.|++.||.|||++ 
T Consensus        42 ~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~-  120 (314)
T cd08216          42 DLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK-  120 (314)
T ss_pred             HHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            3468999999999999999998874333     3499999965 4444433 245689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC-----------CccccccccCCcccccc--CccCCCCcchhhHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLL  155 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l  155 (401)
                      +|+||||||+||+++.++.+||+|||.+......           ....++..|+|||.+.+  ..++.++|||||||++
T Consensus       121 ~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il  200 (314)
T cd08216         121 GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITA  200 (314)
T ss_pred             CeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHH
Confidence            9999999999999999999999999987653321           12345678999999876  3588999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhh----hcccccccc------------------------ccccCCCChHHHHHHHHHHHHhcc
Q 015733          156 LDLLSGKHIPPSHALDLIR----DRNIQTLTD------------------------SCLEGQFSSDEGTELVRLASRCLQ  207 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~----~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~li~~cl~  207 (401)
                      |||++|..||.........    ......+.+                        .......+...+.++.+++..||+
T Consensus       201 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  280 (314)
T cd08216         201 CELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQ  280 (314)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhh
Confidence            9999999998643211000    000000000                        000111233456789999999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 015733          208 YEPRERPNPRSLVTA  222 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~  222 (401)
                      .||++|||+.+++..
T Consensus       281 ~~P~~Rpt~~~ll~~  295 (314)
T cd08216         281 RDPESRPSASQLLNH  295 (314)
T ss_pred             cCCCcCcCHHHHhcC
Confidence            999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=6.9e-31  Score=241.99  Aligned_cols=203  Identities=16%  Similarity=0.218  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....|..|+.++++++|||++.+...+.     .+||||++|+ +...+... ...+++..+..++.|++.||.|||+. 
T Consensus        36 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-  114 (277)
T cd05577          36 GEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-  114 (277)
T ss_pred             hhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3456788999999999999999874433     3599999965 44344332 24799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |++||||+|+||+++.++.++|+|||++......   ....++..|++||.+.+..++.++|||||||++|+|++|+.||
T Consensus       115 ~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~  194 (277)
T cd05577         115 RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPF  194 (277)
T ss_pred             CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999999998765432   2235678999999998888999999999999999999999997


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~  221 (401)
                      .................  ......+...+..+.++|.+||+.+|.+||     ++.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         195 RQRKEKVEKEELKRRTL--EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             CCCcccccHHHHHhccc--cccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh
Confidence            54321100000001111  112234556788899999999999999999     5555654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=8.9e-31  Score=245.14  Aligned_cols=207  Identities=17%  Similarity=0.214  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+|+.++.+++|+|++.+...+.       .+||||+.+++...+......+++..+..++.|++.||.|||+. |+
T Consensus        51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i  129 (309)
T cd07845          51 ISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN-FI  129 (309)
T ss_pred             chhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            45678999999999999998874321       35999999877777665557899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+||+++.++.+||+|||++.......    ...+++.|+|||.+.+ ..++.++|||||||++|||++|..||
T Consensus       130 ~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f  209 (309)
T cd07845         130 IHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLL  209 (309)
T ss_pred             ecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999988755331    2234678999999876 45789999999999999999999888


Q ss_pred             CchhhHHhhhcccc-------cc----cc-----c-cccC-CC------ChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          166 PSHALDLIRDRNIQ-------TL----TD-----S-CLEG-QF------SSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~~~-------~~----~~-----~-~~~~-~~------~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ..............       ..    ..     . .... ..      ....+..+.++|.+||+.||.+|||+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         210 PGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             CCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            64321111000000       00    00     0 0000 00      0124677899999999999999999999987


Q ss_pred             HHHc
Q 015733          222 ALVT  225 (401)
Q Consensus       222 ~l~~  225 (401)
                      +-+.
T Consensus       290 h~~f  293 (309)
T cd07845         290 SSYF  293 (309)
T ss_pred             Chhh
Confidence            5444

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-30  Score=238.91  Aligned_cols=199  Identities=13%  Similarity=0.106  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...|.+|+.++++++|||++++.....       ..|+||++++.+..+.....++++..+.+++.|++.||.|||+. |
T Consensus        48 ~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~-~  126 (264)
T cd06653          48 VNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSN-M  126 (264)
T ss_pred             HHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            457889999999999999998884432       23999998654443333445689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++|+||||+||+++.++.++|+|||+++.....       ....++..|+|||.+.+...+.++|||||||++|++++|+
T Consensus       127 i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  206 (264)
T cd06653         127 IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEK  206 (264)
T ss_pred             EecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCC
Confidence            999999999999999999999999998764321       2345788999999998888899999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .||......    ..............+|...+..+.+++.+||. +|..||++.+++.
T Consensus       207 ~p~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         207 PPWAEYEAM----AAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CCCCccCHH----HHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            987543111    11111122222344677788899999999999 5799999998765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=2.3e-30  Score=234.22  Aligned_cols=201  Identities=16%  Similarity=0.193  Sum_probs=160.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+..+++++|||++.+...+.     ..++||++| ++...+......+++..+..++.|++.||.+||+. |
T Consensus        40 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-~  118 (253)
T cd05122          40 KKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN-G  118 (253)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcC-C
Confidence            4578999999999999999999885443     349999995 45554444446899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ++||||+|+||++++++.++|+|||.+......   ....++..|++||.+.+...+.++||||||+++|+|++|+.|+.
T Consensus       119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  198 (253)
T cd05122         119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYS  198 (253)
T ss_pred             EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999998876654   34567889999999998889999999999999999999999876


Q ss_pred             chhhHHhhhccccccccccccCCCC--hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .............     ......+  ..++..+.++|.+||+.||.+|||+.+++..
T Consensus       199 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         199 ELPPMKALFKIAT-----NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             CCchHHHHHHHHh-----cCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            5311110000000     1111122  2236789999999999999999999998753

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=8.6e-31  Score=241.68  Aligned_cols=202  Identities=15%  Similarity=0.200  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhhhC-CCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           19 YFIVSLVLIASMS-SFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        19 ~f~~E~~~l~~~~-h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+|+..+.++. |||++.+...+.       ..||||+++++...+......+++..+..++.|++.||.|||+. |+
T Consensus        43 ~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~i  121 (282)
T cd07831          43 NNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRN-GI  121 (282)
T ss_pred             hHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4567999999885 999888773222       33999999888877766566899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||+|+||+++. +.+||+|||+++.....   ....++..|+|||.+.. ..++.++|||||||++|||++|..||.
T Consensus       122 ~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~  200 (282)
T cd07831         122 FHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFP  200 (282)
T ss_pred             eecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCC
Confidence            99999999999999 99999999998875433   23456889999998754 457889999999999999999998886


Q ss_pred             chhhHHhhhcc-------ccc---ccc--ccccCC-----------CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRN-------IQT---LTD--SCLEGQ-----------FSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~-------~~~---~~~--~~~~~~-----------~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...........       ...   ...  ......           .....+..+.++|.+||+.+|++|||+.+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         201 GTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            43211000000       000   000  000000           112457889999999999999999999999863

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=2e-31  Score=242.74  Aligned_cols=201  Identities=22%  Similarity=0.321  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ....+|+.++.+++||||+.+.....     ..||||++++ +...+. ....+++..+..++.|++.||.+||+. |++
T Consensus        43 ~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~-~i~  120 (260)
T PF00069_consen   43 EENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSK-GIV  120 (260)
T ss_dssp             HHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             chhhhhhhcccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc-ccc
Confidence            34456999999999999998884333     3499999984 444443 567799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccc-cCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLR-TGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |+||||+||+++.++.++|+|||.+....    ......++..|+|||++. +...+.++||||+|+++|+|++|..|+.
T Consensus       121 H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~  200 (260)
T PF00069_consen  121 HRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFE  200 (260)
T ss_dssp             ESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSST
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999987521    123456788999999998 7889999999999999999999999877


Q ss_pred             chhhHHhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ........ .............  .........+.+++.+||+.||++|||+.++++
T Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  201 ESNSDDQL-EIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TSSHHHHH-HHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             cccchhhh-hhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            54111000 0011111000000  111122488999999999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.97  E-value=6.7e-31  Score=242.44  Aligned_cols=205  Identities=15%  Similarity=0.240  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+..|+.++++++|||++.++....     ..||||+++++...+.....++++..+..++.|++.||.|||+. +++
T Consensus        42 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~  120 (283)
T cd05118          42 PKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH-GIL  120 (283)
T ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            467889999999999999999884333     34999999888777766567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |+||+|+||+++.++.++|+|||.+.......    ...++..|++||.+.+. ..+.++||||||+++|+|+||+.||.
T Consensus       121 H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~  200 (283)
T cd05118         121 HRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFP  200 (283)
T ss_pred             ecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999987765432    23467789999998876 68999999999999999999998875


Q ss_pred             chhhHHhhhc-----------ccccccc---------c----cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDR-----------NIQTLTD---------S----CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~-----------~~~~~~~---------~----~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..........           .......         +    ..........+.++.++|.+||++||.+||++.+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         201 GKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             CCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            4321110000           0000000         0    00001123467889999999999999999999999753

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=234.73  Aligned_cols=195  Identities=15%  Similarity=0.217  Sum_probs=163.7

Q ss_pred             HHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceecc
Q 015733           20 FIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHD   94 (401)
Q Consensus        20 f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~d   94 (401)
                      -+-|-.+|..-+||.+..+-+.+|     +.||||..||-+.....+.+.+++.....+...|+.||.|||++ +||.||
T Consensus       215 TlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~-~ivYRD  293 (516)
T KOG0690|consen  215 TLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSR-NIVYRD  293 (516)
T ss_pred             hhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhC-Ceeeee
Confidence            345778899999998777766666     33999999887776666778899999999999999999999999 999999


Q ss_pred             CCCCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhh
Q 015733           95 LNAYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL  170 (401)
Q Consensus        95 lk~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~  170 (401)
                      ||.+|.|+|.+|++||.|||+++..-    ...++||||.|+|||++....|+...|.|.+|||+|||++|+.||+....
T Consensus       294 lKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh  373 (516)
T KOG0690|consen  294 LKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH  373 (516)
T ss_pred             chhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch
Confidence            99999999999999999999998732    23578999999999999999999999999999999999999999987543


Q ss_pred             HHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 015733          171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVT  221 (401)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~  221 (401)
                      +....-++..      .-.+|..++++...|+..+|.+||.+|..     +.||.+
T Consensus       374 ~kLFeLIl~e------d~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~  423 (516)
T KOG0690|consen  374 EKLFELILME------DLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMR  423 (516)
T ss_pred             hHHHHHHHhh------hccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHh
Confidence            3222222221      12478889999999999999999999953     666665

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=1.6e-30  Score=236.16  Aligned_cols=204  Identities=16%  Similarity=0.182  Sum_probs=162.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+.+.|.+|+..+++++|||++.++....       ..|+||++++.+..+......+++..+..++.|++.||.|||+.
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (260)
T cd06606          41 EELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN  120 (260)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34678999999999999999999883222       34999997654444443444899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                       |++|+||+|+||+++.++.++|+|||.+.......      ...++..|++||.+.+...+.++||||||+++++|++|
T Consensus       121 -~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g  199 (260)
T cd06606         121 -GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATG  199 (260)
T ss_pred             -CccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhC
Confidence             99999999999999999999999999988765443      34578899999999888899999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||.......   .....+.........+...+..+.++|.+||+.+|++||++.+++..
T Consensus       200 ~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         200 KPPWSELGNPM---AALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             CCCCCCCCchH---HHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence            99875532110   11111111122334566678899999999999999999999999763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=1.3e-30  Score=242.15  Aligned_cols=201  Identities=13%  Similarity=0.186  Sum_probs=157.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||++.+...+.     ..|+||++++.+..+.. ...+++..+..++.|++.||.|||+. |+
T Consensus        59 ~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~l~~~~~~~i~~~l~~al~~LH~~-gi  136 (293)
T cd06647          59 KKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVCRECLQALEFLHSN-QV  136 (293)
T ss_pred             HHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHhC-CE
Confidence            3467899999999999999999884332     34999998654444432 24588999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||+|+||+++.++.++|+|||++.......    ...+++.|++||.+.+..++.++|||||||++|++++|..||.
T Consensus       137 ~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~  216 (293)
T cd06647         137 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (293)
T ss_pred             eeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999877644332    2357788999999988889999999999999999999999986


Q ss_pred             chhhHHhhhccccccc-cccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLT-DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......    ....+. ........+...+..+.++|.+||+.+|.+||++.+++.+
T Consensus       217 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         217 NENPLR----ALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CCChhh----heeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            432110    011110 1111111234467789999999999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=9.5e-31  Score=243.57  Aligned_cols=206  Identities=17%  Similarity=0.169  Sum_probs=155.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+..|+.++++++|+|++.+...+.     ..||||+.+++...+......+++..+..++.||+.||.|||++ |+
T Consensus        45 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i  123 (298)
T cd07841          45 INFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSN-WI  123 (298)
T ss_pred             hhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3456788999999999999998884333     34999996666666654444799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +|+||+|+||+++.++.++|+|||++.......    ...+++.|+|||.+.+ ..++.++|||||||++|||++|.++|
T Consensus       124 ~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~  203 (298)
T cd07841         124 LHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFL  203 (298)
T ss_pred             eecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccc
Confidence            999999999999999999999999988754432    2245678999999865 45789999999999999999997665


Q ss_pred             CchhhHHhhhcccc--------------cc---ccccccC-----CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQ--------------TL---TDSCLEG-----QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~--------------~~---~~~~~~~-----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..............              .+   .......     ......+..+.++|.+||+++|++|||+.+++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         204 PGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             cCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            43211000000000              00   0000000     1123356789999999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=1.8e-30  Score=239.39  Aligned_cols=200  Identities=17%  Similarity=0.197  Sum_probs=153.6

Q ss_pred             HHHHHHHH---HhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           19 YFIVSLVL---IASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        19 ~f~~E~~~---l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+..|...   +....||+++.+...+.     ..||||++|+.+..+......+++..+..++.|++.||.|||+. ++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i  118 (278)
T cd05606          40 LALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNR-FV  118 (278)
T ss_pred             HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            35555443   44457899998774433     34999999776555555567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+||+++.++.++|+|||++......  ....|+..|+|||.+.++ .++.++||||+||++|+|++|..||..
T Consensus       119 ~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~  198 (278)
T cd05606         119 VYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ  198 (278)
T ss_pred             EcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999998764332  235688999999998754 589999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ......  ....... .......+...+.++.+++.+||..+|.+||     ++.++++.
T Consensus       199 ~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         199 HKTKDK--HEIDRMT-LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             CCccch--HHHHHHh-hccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence            311100  0000100 1112344556788999999999999999999     89898763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=1e-30  Score=244.46  Aligned_cols=203  Identities=16%  Similarity=0.209  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-------------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-------------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-------------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.+|+.++++++|||++.+.....             .+||||+.+++...+......+++..+..++.||+.||.||
T Consensus        56 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~l  135 (310)
T cd07865          56 ITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYI  135 (310)
T ss_pred             hHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999988773211             45999999887777766566799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccC-ccCCCCcchhhHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLL  155 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l  155 (401)
                      |+. |++|+||||+||+++.++.+||+|||++.......        ...++..|+|||.+.+. .++.++||||||+++
T Consensus       136 H~~-~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l  214 (310)
T cd07865         136 HRN-KILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIM  214 (310)
T ss_pred             HHC-CeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHH
Confidence            999 99999999999999999999999999987653321        22457789999988764 478899999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhccccccc-----------------cc-cccCC----C-----ChHHHHHHHHHHHHhccc
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQTLT-----------------DS-CLEGQ----F-----SSDEGTELVRLASRCLQY  208 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~----~-----~~~~~~~l~~li~~cl~~  208 (401)
                      |+|+||..||......... ..+..+.                 +. .....    .     +...+..+.+||.+||+.
T Consensus       215 ~el~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~  293 (310)
T cd07865         215 AEMWTRSPIMQGNTEQHQL-TLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVL  293 (310)
T ss_pred             HHHHhCCCCCCCCCHHHHH-HHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcC
Confidence            9999999887543211000 0000000                 00 00000    0     111245678999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 015733          209 EPRERPNPRSLVTA  222 (401)
Q Consensus       209 ~p~~Rps~~~vl~~  222 (401)
                      ||.+|||+.+++++
T Consensus       294 ~P~~R~t~~e~l~h  307 (310)
T cd07865         294 DPAKRIDADTALNH  307 (310)
T ss_pred             ChhhccCHHHHhcC
Confidence            99999999999853

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-30  Score=240.39  Aligned_cols=206  Identities=18%  Similarity=0.226  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....|..|+.++++++|||++.+....       ..+||||+++++...+......+++..+..++.||+.||+|||+. 
T Consensus        41 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~-  119 (287)
T cd07840          41 FPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN-  119 (287)
T ss_pred             chHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            346789999999999999988877322       235999999887777766557899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |++|+||+|+||++++++.++|+|||++.......     ...++..|+|||.+.+ ..++.++||||||+++|||+||.
T Consensus       120 ~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~  199 (287)
T cd07840         120 GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGK  199 (287)
T ss_pred             CceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999988755432     2345778999998765 45789999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-----------cccc--------------ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRNIQ-----------TLTD--------------SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-----------~~~~--------------~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||..............           ...+              ..+...+...++..+.+++.+||+.+|.+||++.
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~  279 (287)
T cd07840         200 PIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISAD  279 (287)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            88764322111000000           0000              0000001111377899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++..
T Consensus       280 ~~l~~  284 (287)
T cd07840         280 QALQH  284 (287)
T ss_pred             HHhhC
Confidence            98763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=8.3e-31  Score=242.05  Aligned_cols=205  Identities=15%  Similarity=0.236  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGET-QPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+..++.++|||++++...+.     ..||||+++++...+.... ..+++..+..++.|++.||.|||+. ++
T Consensus        42 ~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~-~~  120 (283)
T cd07835          42 PSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH-RV  120 (283)
T ss_pred             hhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            467899999999999999998873333     3499999877666654432 4689999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||+|+||+++.++.++|+|||++......    ....+++.|+|||++.+. .++.++||||||+++|+|+||..||
T Consensus       121 ~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf  200 (283)
T cd07835         121 LHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLF  200 (283)
T ss_pred             eCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999998764322    223457889999988764 4788999999999999999999887


Q ss_pred             CchhhHHhhhccc--------------c---cc---cccc---ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNI--------------Q---TL---TDSC---LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~--------------~---~~---~~~~---~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .............              .   ..   ....   .........+..+.++|.+||+.+|.+|||+.+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         201 PGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             CCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            5432110000000              0   00   0000   0011123456789999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.97  E-value=1.9e-30  Score=241.08  Aligned_cols=205  Identities=16%  Similarity=0.196  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++++++|||++.+...+.     ..||||+++++...+... ...+++..+..++.||+.||+|||++ |+
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  123 (294)
T PLN00009         45 PSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH-RV  123 (294)
T ss_pred             hHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            467889999999999999999985444     349999988766665433 33468889999999999999999999 99


Q ss_pred             eeccCCCCCEEECC-CCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||+|+||+++. ++.+||+|||++......    ....+++.|+|||++.+. .++.++|||||||++|+|+||..|
T Consensus       124 ~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~p  203 (294)
T PLN00009        124 LHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPL  203 (294)
T ss_pred             eCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999985 557899999998764332    223467899999998764 578999999999999999999988


Q ss_pred             CCchhhHHhhhccc-------ccc-------c-----cccccC----CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          165 PPSHALDLIRDRNI-------QTL-------T-----DSCLEG----QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~~-------~~~-------~-----~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |.............       ...       .     .+....    ...+..+..+.+++.+||+.+|.+||++.+++.
T Consensus       204 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        204 FPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             CCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            85432110000000       000       0     000000    012345677899999999999999999999986


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      .
T Consensus       284 ~  284 (294)
T PLN00009        284 H  284 (294)
T ss_pred             C
Confidence            3

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1e-30  Score=247.82  Aligned_cols=209  Identities=16%  Similarity=0.261  Sum_probs=159.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....+..|+.+++.++|||++.+...+          ..+||||+.+++...+. ...++++..+..++.|++.||.|||
T Consensus        47 ~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH  125 (337)
T cd07858          47 DAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIR-SSQTLSDDHCQYFLYQLLRGLKYIH  125 (337)
T ss_pred             hhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCCCCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345788899999999999999887322          24599999887766554 4467999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHh
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++ +++||||||+||+++.++.+||+|||+++.....    ....++..|+|||.+.. ..++.++|||||||++|+|++
T Consensus       126 ~~-~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  204 (337)
T cd07858         126 SA-NVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLG  204 (337)
T ss_pred             hC-CEecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHc
Confidence            99 9999999999999999999999999998875443    23456889999998865 468899999999999999999


Q ss_pred             CCCCCCchhhHHh-------------------hhccccccccc---ccc---CCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          161 GKHIPPSHALDLI-------------------RDRNIQTLTDS---CLE---GQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       161 g~~p~~~~~~~~~-------------------~~~~~~~~~~~---~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      |+.||........                   ...........   ...   ....+..+.++.++|.+||+.+|.+|||
T Consensus       205 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps  284 (337)
T cd07858         205 RKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRIT  284 (337)
T ss_pred             CCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccC
Confidence            9998854311000                   00000000000   000   0112346788999999999999999999


Q ss_pred             HHHHHHH--HHcc
Q 015733          216 PRSLVTA--LVTL  226 (401)
Q Consensus       216 ~~~vl~~--l~~~  226 (401)
                      +.+++.+  +..+
T Consensus       285 ~~ell~h~~~~~~  297 (337)
T cd07858         285 VEEALAHPYLASL  297 (337)
T ss_pred             HHHHHcCcchhhh
Confidence            9999975  5544

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.1e-30  Score=237.50  Aligned_cols=199  Identities=14%  Similarity=0.164  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHHhhhC---CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMS---SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~---h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+|.+|+.++++++   |||++.+...+.     .+||||++|+.+..+... .++++..+..++.|++.||.|||+. 
T Consensus        43 ~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~-  120 (277)
T cd06917          43 VSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKA-GPIAEKYISVIIREVLVALKYIHKV-  120 (277)
T ss_pred             HHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            457888999999997   999998884333     349999987654444433 4799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      |++|+||+|+||+++.++.++|+|||++.......    ...|+..|+|||.+.++ .++.++|||||||++|+|++|..
T Consensus       121 ~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~  200 (277)
T cd06917         121 GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNP  200 (277)
T ss_pred             CcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999987754432    24578899999998764 46899999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCCh-HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSS-DEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||..........    . ........++. ..+.++.+++.+||+.||++||++.+++..
T Consensus       201 p~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         201 PYSDVDAFRAMM----L-IPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             CCCCCChhhhhh----c-cccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            875432111110    0 00111112222 266789999999999999999999999864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=9.1e-31  Score=238.87  Aligned_cols=201  Identities=18%  Similarity=0.203  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++|||++.+...+.     ..||||++|+.+..+..+...+++..+..++.||+.||.|||+. |+
T Consensus        36 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~-~i  114 (265)
T cd05579          36 QVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSN-GI  114 (265)
T ss_pred             HHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc-Ce
Confidence            4567899999999999999998773332     34999998654443333444799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC------------CccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                      +|+||+|+||+++.++.++|+|||++......            ....++..|++||.......+.++||||||+++|++
T Consensus       115 ~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l  194 (265)
T cd05579         115 IHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEF  194 (265)
T ss_pred             ecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHH
Confidence            99999999999999999999999998764332            123467889999999888889999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCCChHH--HHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDE--GTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ++|..||...........    +...  ....+...  +..+.+++.+||+.+|.+|||+..+.+.|
T Consensus       195 ~~g~~p~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         195 LVGIPPFHGETPEEIFQN----ILNG--KIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             HhCCCCCCCCCHHHHHHH----HhcC--CcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence            999998764432211111    1110  11123333  78899999999999999999995554444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.3e-30  Score=240.83  Aligned_cols=205  Identities=13%  Similarity=0.208  Sum_probs=156.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCC--CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE--TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....+.+|+.++++++|||++.+...+.     .+||||+++++...+...  ...+++..+..++.|++.||.|||+. 
T Consensus        41 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-  119 (284)
T cd07836          41 TPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN-  119 (284)
T ss_pred             chHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC-
Confidence            3467889999999999999999884433     449999998777665443  35699999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      |++||||||+||++++++.++|+|||++......    ....++..|++||++.+. .++.++|||||||++|++++|..
T Consensus       120 ~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~  199 (284)
T cd07836         120 RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRP  199 (284)
T ss_pred             CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999998764332    233467889999998764 47889999999999999999998


Q ss_pred             CCCchhhHHhhhccc-----------cccc-cccccC-----------CCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          164 IPPSHALDLIRDRNI-----------QTLT-DSCLEG-----------QFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       164 p~~~~~~~~~~~~~~-----------~~~~-~~~~~~-----------~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ||.+...........           ..+. .+.+..           .+.+..+..+.+++.+||+.||.+||++.+++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l  279 (284)
T cd07836         200 LFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDAL  279 (284)
T ss_pred             CCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHh
Confidence            876432211100000           0000 000000           11224567889999999999999999999987


Q ss_pred             H
Q 015733          221 T  221 (401)
Q Consensus       221 ~  221 (401)
                      .
T Consensus       280 ~  280 (284)
T cd07836         280 Q  280 (284)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.4e-30  Score=233.72  Aligned_cols=200  Identities=15%  Similarity=0.189  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++.+++|||++.+.....     ..||||++++.+..+.....++++..+..++.|++.||.|||+. |+
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i  120 (254)
T cd06627          42 ALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQ-GV  120 (254)
T ss_pred             HHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhC-Cc
Confidence            4568999999999999999888774332     34999998754444444447899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCc----cccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS----YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||+|+||+++.++.++|+|||++........    ..++..|++||...+...+.++||||+|+++|+|++|..|+.
T Consensus       121 ~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~  200 (254)
T cd06627         121 IHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYY  200 (254)
T ss_pred             ccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999887654432    457889999999988778999999999999999999998875


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ........    .... ......++...+..+.+++.+||+.+|++|||+.+++.
T Consensus       201 ~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         201 DLNPMAAL----FRIV-QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CccHHHHH----HHHh-ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            43211110    0111 11122345667889999999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.4e-30  Score=242.04  Aligned_cols=204  Identities=13%  Similarity=0.198  Sum_probs=153.5

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc----------ccEeeecCCcccccccCC----CCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGE----TQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~----~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.+|+.++++++ |||++++.....          ..||||+++++...+...    ...+++..+..++.||+.||
T Consensus        44 ~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L  123 (295)
T cd07837          44 PPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGV  123 (295)
T ss_pred             chHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHH
Confidence            467899999999996 599888774322          359999998776665432    35689999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECC-CCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l  155 (401)
                      .|||++ |++||||+|+||+++. ++.+||+|||++......    ....+++.|+|||.+.+ ..++.++||||||+++
T Consensus       124 ~~LH~~-~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l  202 (295)
T cd07837         124 AHCHKH-GVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIF  202 (295)
T ss_pred             HHHHHC-CeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHH
Confidence            999999 9999999999999998 889999999998764322    22346788999998875 4578999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhcccc-----------cc---cc----cccc----CCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQ-----------TL---TD----SCLE----GQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~-----------~~---~~----~~~~----~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      |+|++|..||.+............           ..   ..    +...    ....+..+..+.++|.+||+.||.+|
T Consensus       203 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R  282 (295)
T cd07837         203 AEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKR  282 (295)
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhc
Confidence            999999988865321110000000           00   00    0000    00112357789999999999999999


Q ss_pred             CCHHHHHH
Q 015733          214 PNPRSLVT  221 (401)
Q Consensus       214 ps~~~vl~  221 (401)
                      ||+.+++.
T Consensus       283 ~~~~eil~  290 (295)
T cd07837         283 ISAKAALT  290 (295)
T ss_pred             CCHHHHhc
Confidence            99999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=2.2e-30  Score=244.61  Aligned_cols=205  Identities=18%  Similarity=0.193  Sum_probs=152.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+.++..++||||+.++..+.     ..||||+.++ +...+... ...+++..+..++.|++.||+|||+. |
T Consensus        43 ~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~  121 (328)
T cd08226          43 LKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN-G  121 (328)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            467888999999999999999885544     3499999964 44444322 34689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----------CccccccccCCccccccC--ccCCCCcchhhHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTG--RVTPESVMYSFGTLLL  156 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~--~~~~~~Dv~slG~~l~  156 (401)
                      ++||||||+||+++.++.++++||+.+......           ....++..|++||++.+.  .++.++|||||||++|
T Consensus       122 ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~  201 (328)
T cd08226         122 YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITAC  201 (328)
T ss_pred             eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHH
Confidence            999999999999999999999999754332111           011235679999999763  4789999999999999


Q ss_pred             HHHhCCCCCCchhhHHhhhcccc-----------------------------------------ccccccccCCCChHHH
Q 015733          157 DLLSGKHIPPSHALDLIRDRNIQ-----------------------------------------TLTDSCLEGQFSSDEG  195 (401)
Q Consensus       157 el~tg~~p~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~  195 (401)
                      +|++|..||..............                                         .+....+....+..++
T Consensus       202 el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (328)
T cd08226         202 ELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFS  281 (328)
T ss_pred             HHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhh
Confidence            99999999864321110000000                                         0000111122234567


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          196 TELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       196 ~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..+.+|+.+||..||++|||+.+++++
T Consensus       282 ~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         282 PAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            889999999999999999999999863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.5e-31  Score=251.15  Aligned_cols=196  Identities=16%  Similarity=0.178  Sum_probs=153.9

Q ss_pred             HHHHHHHH-hhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           20 FIVSLVLI-ASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        20 f~~E~~~l-~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      --.|+.++ ..-+|||++.....+.     ..|||++.|+ +++.+. ...... ..+..|+.+|+.|+.|||++ |+||
T Consensus       362 ~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~-~~~~~~-~e~~~w~~~lv~Av~~LH~~-gvvh  438 (612)
T KOG0603|consen  362 NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIR-SKPEFC-SEASQWAAELVSAVDYLHEQ-GVVH  438 (612)
T ss_pred             cccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHHH-hcchhH-HHHHHHHHHHHHHHHHHHhc-Ceee
Confidence            34566444 4458999999884333     3499999975 444333 222233 77888999999999999999 9999


Q ss_pred             ccCCCCCEEE-CCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhh
Q 015733           93 HDLNAYRIVF-DDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL  170 (401)
Q Consensus        93 ~dlk~~Nill-~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~  170 (401)
                      |||||+|||+ ++.++++|+|||.++..... .+.+-|..|.|||++....+++++|+||||++||+|++|+.||.....
T Consensus       439 RDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~  518 (612)
T KOG0603|consen  439 RDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPA  518 (612)
T ss_pred             cCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCc
Confidence            9999999999 69999999999999887665 233567899999999988999999999999999999999999865432


Q ss_pred             HHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      +       .++......+.+...++...++|+.+||+.||.+||++.++...=+.
T Consensus       519 ~-------~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  519 G-------IEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             h-------HHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence            2       22222233344557789999999999999999999999999775444

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=2.3e-30  Score=245.38  Aligned_cols=203  Identities=16%  Similarity=0.264  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+..|+.++.++ +||||+.+...+.       .+||||+++++...+...  .+++..+..++.||+.||.|||+. 
T Consensus        50 ~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~-  126 (337)
T cd07852          50 AQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYMETDLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHSG-  126 (337)
T ss_pred             hhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            45678899999999 9999999874322       349999998766655433  789999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC---------ccccccccCCcccccc-CccCCCCcchhhHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---------SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---------~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el  158 (401)
                      |++||||||+||+++.++.+||+|||++.......         ...++..|+|||.+.+ ..++.++||||||+++|+|
T Consensus       127 ~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el  206 (337)
T cd07852         127 NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEM  206 (337)
T ss_pred             CeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999988643322         2346889999998865 4578899999999999999


Q ss_pred             HhCCCCCCchhhHHhhhc-------------------ccccccc----ccc--cCCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          159 LSGKHIPPSHALDLIRDR-------------------NIQTLTD----SCL--EGQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~-------------------~~~~~~~----~~~--~~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      +||+.||...........                   ....+..    ...  .....+..+.++.++|.+||+.+|++|
T Consensus       207 ~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R  286 (337)
T cd07852         207 LLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKR  286 (337)
T ss_pred             HhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccc
Confidence            999988754221100000                   0000000    000  001112257789999999999999999


Q ss_pred             CCHHHHHHH
Q 015733          214 PNPRSLVTA  222 (401)
Q Consensus       214 ps~~~vl~~  222 (401)
                      ||+.+++..
T Consensus       287 ps~~~il~~  295 (337)
T cd07852         287 LTAEEALEH  295 (337)
T ss_pred             cCHHHHhhC
Confidence            999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=2.4e-30  Score=235.13  Aligned_cols=202  Identities=14%  Similarity=0.164  Sum_probs=160.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccC---CCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSG---ETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....++..|+.++++++|||++.+...+.     ..||||++++.+ ..+..   ....+++..+..++.|++.||.|||
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh  120 (256)
T cd08530          41 KEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH  120 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999999998773222     349999986543 33322   2467899999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +. |++|+||+|.||+++.++.+||+|||++......  ....+++.|++||.+.+..++.++|+||||+++|+|++|..
T Consensus       121 ~~-~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~  199 (256)
T cd08530         121 EQ-KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAP  199 (256)
T ss_pred             hC-CcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            99 9999999999999999999999999998876543  22356889999999998889999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||............     ........+...+.++.+++.+||+.+|++|||+.++++.
T Consensus       200 p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         200 PFEARSMQDLRYKV-----QRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             CCCCCCHHHHHHHH-----hcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            87654322111111     1111223445678889999999999999999999999763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=2.5e-30  Score=240.13  Aligned_cols=201  Identities=15%  Similarity=0.178  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.+++.++|||++.++..+.     ..||||++++.+..+. ....+++..+..++.|++.||+|||+. |++
T Consensus        61 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~-~~~~~~~~~~~~~~~ql~~~l~~lH~~-giv  138 (292)
T cd06657          61 RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIV-THTRMNEEQIAAVCLAVLKALSVLHAQ-GVI  138 (292)
T ss_pred             HHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            456899999999999999888874333     3499999976554444 234689999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||+|+||+++.++.++|+|||++......    ....+++.|++||.+.+..++.++|+||||+++|+|++|..||..
T Consensus       139 H~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~  218 (292)
T cd06657         139 HRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN  218 (292)
T ss_pred             cCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999987654332    234578899999999888889999999999999999999998765


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......... ........+  .....++..+.+++.+||+.+|.+||++.+++.+
T Consensus       219 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         219 EPPLKAMKM-IRDNLPPKL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             CCHHHHHHH-HHhhCCccc--CCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence            322111100 000001111  1123456788999999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=1.7e-30  Score=241.70  Aligned_cols=206  Identities=16%  Similarity=0.237  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...++..|+..+.+.. |||++.++..+.     ..||||+++.+..++.....++++..+..++.|++.||.|||+..|
T Consensus        56 ~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~  135 (296)
T cd06618          56 ENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHG  135 (296)
T ss_pred             HHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            3456778887777775 999998884433     3499999887666665555689999999999999999999997438


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCc----cCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGR----VTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~----~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++||||+|+||++++++.+||+|||++.......   ...++..|+|||.+.+..    ++.++||||||+++|+|++|+
T Consensus       136 i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~  215 (296)
T cd06618         136 VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ  215 (296)
T ss_pred             EecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999987654322   234678899999987543    788999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccc-cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCL-EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .||.......   .....+..... .......++.++.+++.+||+.||.+||++.+++.+..
T Consensus       216 ~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~  275 (296)
T cd06618         216 FPYKNCKTEF---EVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPF  275 (296)
T ss_pred             CCCCcchhHH---HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChh
Confidence            9975421110   00111111110 01111235778999999999999999999999987543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=1e-30  Score=247.49  Aligned_cols=205  Identities=15%  Similarity=0.251  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...+.+|+.++++++||||+++...+.         ..||||+.+++...+. ....+++..+..++.||+.||.|||+.
T Consensus        48 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~  126 (334)
T cd07855          48 AKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIH-SDQPLTEEHIRYFLYQLLRGLKYIHSA  126 (334)
T ss_pred             hHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhhhhHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            456788999999999999998763221         3599999887666654 345699999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCcccccc-CccCCCCcchhhHHHHHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el  158 (401)
                       |++||||||+||+++.++.+||+|||++......        ....++..|+|||.+.+ ..++.++|||||||++|||
T Consensus       127 -~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el  205 (334)
T cd07855         127 -NVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEM  205 (334)
T ss_pred             -CeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHH
Confidence             9999999999999999999999999998764322        12356789999999866 4589999999999999999


Q ss_pred             HhCCCCCCchhhHHh-------------------hhcccccccccc-ccCCC-----ChHHHHHHHHHHHHhcccCCCCC
Q 015733          159 LSGKHIPPSHALDLI-------------------RDRNIQTLTDSC-LEGQF-----SSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~~-----~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      ++|+.||........                   ............ .....     ....+.++.++|.+||+.+|.+|
T Consensus       206 ~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  285 (334)
T cd07855         206 LGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEER  285 (334)
T ss_pred             HcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhC
Confidence            999999854321100                   000000000000 00011     13357889999999999999999


Q ss_pred             CCHHHHHHHH
Q 015733          214 PNPRSLVTAL  223 (401)
Q Consensus       214 ps~~~vl~~l  223 (401)
                      ||+.+++.+-
T Consensus       286 pt~~~~l~~~  295 (334)
T cd07855         286 ITVEQALQHP  295 (334)
T ss_pred             cCHHHHHhCh
Confidence            9999998743

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-30  Score=243.78  Aligned_cols=206  Identities=14%  Similarity=0.186  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccC----CCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSG----ETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.+.+|+.++.+++|||++.+...+.       .+||||+++++...+..    ....+++..++.++.|++.||.||
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l  124 (316)
T cd07842          45 ISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYL  124 (316)
T ss_pred             ccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999888884322       34999999876655432    234789999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECC----CCCeEEecccCccccCCC-------CccccccccCCccccccC-ccCCCCcchhhH
Q 015733           85 TSKERALYHDLNAYRIVFDD----DVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTG-RVTPESVMYSFG  152 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~----~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG  152 (401)
                      |+. +++||||||+||+++.    ++.+||+|||++......       ....+++.|+|||.+.+. .++.++||||||
T Consensus       125 H~~-~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG  203 (316)
T cd07842         125 HSN-WVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIG  203 (316)
T ss_pred             HhC-CEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHH
Confidence            999 9999999999999999    999999999998865432       123567889999988764 578999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHh-----hhc------------------------cccccccccccCCCC-----------h
Q 015733          153 TLLLDLLSGKHIPPSHALDLI-----RDR------------------------NIQTLTDSCLEGQFS-----------S  192 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~-----~~~------------------------~~~~~~~~~~~~~~~-----------~  192 (401)
                      |++|+|++|+.||.+......     ...                        ......+......++           .
T Consensus       204 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (316)
T cd07842         204 CIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHK  283 (316)
T ss_pred             HHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhcc
Confidence            999999999988764321110     000                        000000000001111           0


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          193 DEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       193 ~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..+.++.+++.+||+.||.+|||+.+++.+
T Consensus       284 ~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         284 KPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             CCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            345678999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=1.8e-30  Score=240.62  Aligned_cols=207  Identities=15%  Similarity=0.173  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.++ +|||++.+...+.     .+||||++|+.+.........+++..+..++.|++.||.|||+. |
T Consensus        47 ~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~  125 (288)
T cd05583          47 TAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQL-G  125 (288)
T ss_pred             HHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            456788999999999 5899988874433     35999999754444443456789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCc--cCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++||||+|+||+++.++.++|+|||+++......     ...++..|++||.+.+..  .+.++||||||+++|+|+||.
T Consensus       126 ~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~  205 (288)
T cd05583         126 IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGA  205 (288)
T ss_pred             eeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCC
Confidence            9999999999999999999999999987644322     235788999999987654  788999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      .||...............+...  ....+...+..+.+++.+||+.+|++|||+.++...|..
T Consensus       206 ~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         206 SPFTVDGEQNSQSEISRRILKS--KPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             CCcccCcccchHHHHHHHHHcc--CCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence            9875321110000111111111  123455567789999999999999999998888776654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.97  E-value=2.9e-30  Score=234.83  Aligned_cols=201  Identities=17%  Similarity=0.229  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.+.+|+.+++.++|||++.+...+.     .+|+||++++ +...+... ...+++..+..++.|++.||.|||+. 
T Consensus        42 ~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-  120 (257)
T cd08225          42 EKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR-  120 (257)
T ss_pred             hhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            3467889999999999999999884433     3499999864 54444432 34689999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCC-eEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           89 RALYHDLNAYRIVFDDDVN-PRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~-~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +++|+||||+||++++++. +||+|||.+.......    ...+++.|+|||.+.+..++.++||||||+++|++++|..
T Consensus       121 ~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~  200 (257)
T cd08225         121 KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKH  200 (257)
T ss_pred             CcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            9999999999999998864 6999999987755432    2347889999999988889999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||..........    ...... ....+...+.++.+++.+||..+|++|||+.+++..
T Consensus       201 p~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         201 PFEGNNLHQLVL----KICQGY-FAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             CCCCccHHHHHH----HHhccc-CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            876432211111    111111 112344567789999999999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-30  Score=246.11  Aligned_cols=208  Identities=13%  Similarity=0.220  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....+..|+.++.+++|||++.++...          -.+|+||+++.+...+.  ...+++..+..++.|++.||.|||
T Consensus        46 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~--~~~l~~~~~~~i~~ql~~aL~~LH  123 (336)
T cd07849          46 FCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIK--TQHLSNDHIQYFLYQILRGLKYIH  123 (336)
T ss_pred             hHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhcccCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            346688999999999999999887321          13489999987766553  357999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCcccccc-CccCCCCcchhhHHHHHH
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~e  157 (401)
                      +. |++||||||+||+++.++.+||+|||++.......       ...++..|+|||.+.+ ..++.++|||||||++|+
T Consensus       124 ~~-~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~e  202 (336)
T cd07849         124 SA-NVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAE  202 (336)
T ss_pred             hC-CeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHH
Confidence            99 99999999999999999999999999987654321       2356889999998765 468899999999999999


Q ss_pred             HHhCCCCCCchhhHHhh-----------hcccccccccc---------ccCC-----CChHHHHHHHHHHHHhcccCCCC
Q 015733          158 LLSGKHIPPSHALDLIR-----------DRNIQTLTDSC---------LEGQ-----FSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~-----------~~~~~~~~~~~---------~~~~-----~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      |++|+.||.........           ......+....         ....     ..+..+.++.++|.+||+.+|.+
T Consensus       203 l~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  282 (336)
T cd07849         203 MLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHK  282 (336)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhh
Confidence            99999888543211000           00000000000         0000     01234677999999999999999


Q ss_pred             CCCHHHHHHH--HHcc
Q 015733          213 RPNPRSLVTA--LVTL  226 (401)
Q Consensus       213 Rps~~~vl~~--l~~~  226 (401)
                      |||+.+++.+  +...
T Consensus       283 Rpt~~e~l~hp~~~~~  298 (336)
T cd07849         283 RITVEEALAHPYLEQY  298 (336)
T ss_pred             CcCHHHHhcCcccccc
Confidence            9999999885  4443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-30  Score=260.89  Aligned_cols=208  Identities=17%  Similarity=0.227  Sum_probs=166.1

Q ss_pred             hhhHHHHHHHHHHhhh-CCCeEEEeee-ecc----ccEeeecC-CcccccccCCC---------------CCCCHHHHHH
Q 015733           15 LQSTYFIVSLVLIASM-SSFILLAVIF-MFQ----IPSYEFHC-LTFSNNFSGET---------------QPMKWAMRLR   72 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~-~h~niv~~~~-~~~----~~v~Ey~~-~~l~~~~~~~~---------------~~l~~~~~~~   72 (401)
                      .+.+.|..|+.+++.+ .|||++.+.+ +.+    ..|+||+. |.++..+...+               ..|+....+.
T Consensus       343 ~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLls  422 (609)
T KOG0200|consen  343 SEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLS  422 (609)
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHH
Confidence            4568999999999999 5999777663 222    33999998 55555554433               3499999999


Q ss_pred             HHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCcc-----cc--ccccCCccccccCccCCC
Q 015733           73 VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-----ST--NLAFTPPEYLRTGRVTPE  145 (401)
Q Consensus        73 i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~-----~~--~~~y~aPE~~~~~~~~~~  145 (401)
                      ++.||+.||+||+++ ++|||||..+|||+..+..+||+|||+++.......+     .+  ...|||||.+....++.+
T Consensus       423 fa~QIa~GMe~L~~~-~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~k  501 (609)
T KOG0200|consen  423 FAYQIANGMEYLASV-PCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSK  501 (609)
T ss_pred             HHHHHHHHHHHHhhC-CccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCccccc
Confidence            999999999999999 9999999999999999999999999999975543221     11  346999999999999999


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||||||||+||||+|...+|+....   ....+.+.+....+...|..++.++.++|+.||+.+|.+||++.++.+.|..
T Consensus       502 SDVWSfGI~L~EifsLG~~PYp~~~---~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  502 SDVWSFGILLWEIFTLGGTPYPGIP---PTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             chhhHHHHHHHHHhhCCCCCCCCCC---cHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence            9999999999999996544433210   0111222445556667788999999999999999999999999999999887


Q ss_pred             c
Q 015733          226 L  226 (401)
Q Consensus       226 ~  226 (401)
                      .
T Consensus       579 ~  579 (609)
T KOG0200|consen  579 H  579 (609)
T ss_pred             H
Confidence            4

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.9e-30  Score=245.09  Aligned_cols=210  Identities=16%  Similarity=0.254  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+.|..|+.++++++|||++.+...+          -..||||+++++...+. ...++++..+..++.|++.||.|||
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~-~~~~l~~~~~~~i~~~l~~~l~~LH  120 (330)
T cd07834          42 DAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIK-SPQPLTDDHIQYFLYQILRGLKYLH  120 (330)
T ss_pred             hhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchhhhHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999988877321          13499999987666654 3448999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccC-ccCCCCcchhhHHHHHH
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLD  157 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~e  157 (401)
                      +. |++||||||.||+++.++.++|+|||++.......       ...++..|+|||.+.+. .++.++||||||+++|+
T Consensus       121 ~~-gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~  199 (330)
T cd07834         121 SA-NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAE  199 (330)
T ss_pred             hC-CeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHH
Confidence            99 99999999999999999999999999988755432       23467889999999887 78999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhhcccc-------------------cccc---cc---ccCCCChHHHHHHHHHHHHhcccCCCC
Q 015733          158 LLSGKHIPPSHALDLIRDRNIQ-------------------TLTD---SC---LEGQFSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~~~~~-------------------~~~~---~~---~~~~~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      |++|..||..............                   ..+.   ..   .........+..+.++|.+||+++|++
T Consensus       200 l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  279 (330)
T cd07834         200 LLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKK  279 (330)
T ss_pred             HHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhh
Confidence            9999998865432111000000                   0000   00   000112235678999999999999999


Q ss_pred             CCCHHHHHHH--HHccc
Q 015733          213 RPNPRSLVTA--LVTLQ  227 (401)
Q Consensus       213 Rps~~~vl~~--l~~~~  227 (401)
                      |||+.+++..  +....
T Consensus       280 Rpt~~~ll~~~~~~~~~  296 (330)
T cd07834         280 RITADEALAHPYLAQLH  296 (330)
T ss_pred             CCCHHHHHhCccHHhhc
Confidence            9999999974  55544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=4.4e-30  Score=239.50  Aligned_cols=204  Identities=17%  Similarity=0.190  Sum_probs=155.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec---------------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF---------------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~---------------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+..|+.+++.++|||++.+...+               -.+|+||+++++...+......+++..+..++.|++.||
T Consensus        50 ~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL  129 (302)
T cd07864          50 PITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGL  129 (302)
T ss_pred             hHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45678899999999999999987322               135999999887777665566799999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCcccccc-CccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l  155 (401)
                      .|||+. |++|+||+|+||++++++.+||+|||++.......     ...++..|++||.+.+ ..++.++|||||||++
T Consensus       130 ~~LH~~-~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~  208 (302)
T cd07864         130 NYCHKK-NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCIL  208 (302)
T ss_pred             HHHHhC-CeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHH
Confidence            999999 99999999999999999999999999988654332     1234678999998865 3578999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhh----h---c----ccccccc--------------ccccCCCChHHHHHHHHHHHHhcccCC
Q 015733          156 LDLLSGKHIPPSHALDLIR----D---R----NIQTLTD--------------SCLEGQFSSDEGTELVRLASRCLQYEP  210 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~----~---~----~~~~~~~--------------~~~~~~~~~~~~~~l~~li~~cl~~~p  210 (401)
                      |+|++|+.||.........    .   .    ....+..              .... ......+..+.+++.+||+.+|
T Consensus       209 ~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P  287 (302)
T cd07864         209 GELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLR-EEFSFIPTPALDLLDHMLTLDP  287 (302)
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchh-hhcCCCCHHHHHHHHHHccCCh
Confidence            9999999887542110000    0   0    0000000              0000 0112356789999999999999


Q ss_pred             CCCCCHHHHHHH
Q 015733          211 RERPNPRSLVTA  222 (401)
Q Consensus       211 ~~Rps~~~vl~~  222 (401)
                      .+|||+.+++..
T Consensus       288 ~~Rp~~~~il~~  299 (302)
T cd07864         288 SKRCTAEEALNS  299 (302)
T ss_pred             hhCCCHHHHhcC
Confidence            999999998753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2e-30  Score=246.21  Aligned_cols=207  Identities=13%  Similarity=0.208  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.+|+.++..++||||+.+...+.           .+|+||+.+.+....   ...+++..+..++.|++.||.|||
T Consensus        58 ~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~---~~~~~~~~~~~~~~qi~~aL~~LH  134 (342)
T cd07879          58 AKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKIM---GHPLSEDKVQYLVYQMLCGLKYIH  134 (342)
T ss_pred             hhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEecccccCHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356889999999999999998774322           358899876544433   246899999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +. |++||||||+||+++.++.+||+|||+++..... ....++..|+|||.+.+ ..++.++|||||||++|||++|+.
T Consensus       135 ~~-~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~  213 (342)
T cd07879         135 SA-GIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKT  213 (342)
T ss_pred             HC-CcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCC
Confidence            99 9999999999999999999999999998765433 23456888999999876 468899999999999999999999


Q ss_pred             CCCchhhHHhhhccc-------------------ccccc---ccccCC---CChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          164 IPPSHALDLIRDRNI-------------------QTLTD---SCLEGQ---FSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       164 p~~~~~~~~~~~~~~-------------------~~~~~---~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      ||.............                   .....   ......   ..+..+..+.++|.+||+.||.+||++.+
T Consensus       214 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e  293 (342)
T cd07879         214 LFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATE  293 (342)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            986532110000000                   00000   000000   01234567899999999999999999999


Q ss_pred             HHHH--HHccc
Q 015733          219 LVTA--LVTLQ  227 (401)
Q Consensus       219 vl~~--l~~~~  227 (401)
                      ++.+  ++...
T Consensus       294 ~l~h~~f~~~~  304 (342)
T cd07879         294 ALEHPYFDSFR  304 (342)
T ss_pred             HhcCcchhhcc
Confidence            9864  55544

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.97  E-value=6.9e-30  Score=236.16  Aligned_cols=204  Identities=14%  Similarity=0.178  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHhhh---CCCeEEEeeeecc----------ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM---SSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~---~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+..|+.++.++   +|||++++...+.          ..+|||+++++...+... ...+++..+..++.|++.||.
T Consensus        42 ~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~  121 (287)
T cd07838          42 PLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVD  121 (287)
T ss_pred             hhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence            45677888877666   5999888884332          348999988766655443 346999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |||+. +++|+||+|+||+++.++.++|+|||++.......   ...++..|+|||.+.+..++.++|||||||++|+|+
T Consensus       122 ~LH~~-~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~  200 (287)
T cd07838         122 FLHSH-RIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELF  200 (287)
T ss_pred             HHHHC-CeeeccCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHH
Confidence            99999 99999999999999999999999999987754332   234678899999999888999999999999999999


Q ss_pred             hCCCCCCchhhHHhhhcccccc------------------cccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTL------------------TDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      +|..||................                  ......   ....+..+..+.++|.+||+.||.+||++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~  280 (287)
T cd07838         201 RRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFE  280 (287)
T ss_pred             hCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHH
Confidence            9988875432211100000000                  000000   1112245678899999999999999999999


Q ss_pred             HHH
Q 015733          219 LVT  221 (401)
Q Consensus       219 vl~  221 (401)
                      ++.
T Consensus       281 il~  283 (287)
T cd07838         281 ALQ  283 (287)
T ss_pred             Hhc
Confidence            875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=2.9e-30  Score=241.56  Aligned_cols=204  Identities=14%  Similarity=0.170  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec-------------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF-------------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~-------------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+.+|+.++++++||||+.+...+             -.+||||+++++...+......+++..+..++.|++.||.|
T Consensus        51 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~  130 (311)
T cd07866          51 PITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINY  130 (311)
T ss_pred             chhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999887322             13489999988777776666789999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC---------------ccccccccCCccccccC-ccCCCCc
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---------------SYSTNLAFTPPEYLRTG-RVTPESV  147 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---------------~~~~~~~y~aPE~~~~~-~~~~~~D  147 (401)
                      ||++ |++|+||||+||++++++.++|+|||+++......               ...+++.|+|||.+.+. .++.++|
T Consensus       131 lH~~-~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  209 (311)
T cd07866         131 LHEN-HILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVD  209 (311)
T ss_pred             HHhC-CeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhH
Confidence            9999 99999999999999999999999999987643221               12346789999988754 5789999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhhhcc-----------------ccccccccccCCCC-------hHHHHHHHHHHH
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIRDRN-----------------IQTLTDSCLEGQFS-------SDEGTELVRLAS  203 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-------~~~~~~l~~li~  203 (401)
                      ||||||++|||++|..||.+..........                 .............+       ......+.++|.
T Consensus       210 v~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  289 (311)
T cd07866         210 IWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLS  289 (311)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHH
Confidence            999999999999999887543211100000                 00000000000011       123367889999


Q ss_pred             HhcccCCCCCCCHHHHHH
Q 015733          204 RCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       204 ~cl~~~p~~Rps~~~vl~  221 (401)
                      +||+.||.+|||+.+++.
T Consensus       290 ~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         290 KLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHcccCcccCcCHHHHhc
Confidence            999999999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=2.5e-30  Score=232.81  Aligned_cols=188  Identities=18%  Similarity=0.163  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      .+..|...+....|||++.+...+.     .+||||++|+.+..+.....++++..+..++.|++.||.|||++ |++||
T Consensus        31 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~  109 (237)
T cd05576          31 EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALHRE-GIVCR  109 (237)
T ss_pred             hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhC-Ceecc
Confidence            4556667777778999999884333     34999999754433333445699999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL  172 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~  172 (401)
                      ||||+||+++.++.++++|||.+...... ....++..|+|||.+.+..++.++||||+|+++|||++|..|+...... 
T Consensus       110 dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-  188 (237)
T cd05576         110 DLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG-  188 (237)
T ss_pred             CCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh-
Confidence            99999999999999999999987665443 2334567899999998888999999999999999999999765322110 


Q ss_pred             hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                           .    .......+|...+..+.+++.+||+.||++||++.
T Consensus       189 -----~----~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         189 -----I----NTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             -----c----ccccccCCcccCCHHHHHHHHHHccCCHHHhcCCC
Confidence                 0    00111234556778899999999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=4.8e-30  Score=236.62  Aligned_cols=206  Identities=17%  Similarity=0.249  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+..|+.++++++|+|++.+.....     ..||||+++++...+......+++..+..++.|++.||.|||+. |+
T Consensus        41 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i  119 (282)
T cd07829          41 IPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH-RI  119 (282)
T ss_pred             ccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3467889999999999999998773322     34999999887777765546799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||+|+||++++++.++|+|||++.......    ...++..|+|||.+.+. .++.++|||||||++||+++|..||
T Consensus       120 ~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~  199 (282)
T cd07829         120 LHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLF  199 (282)
T ss_pred             ccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999988754432    23446789999998876 7899999999999999999998887


Q ss_pred             CchhhHHhhhcc--------------------ccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRN--------------------IQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~--------------------~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............                    ...........   ...+..+..+.+++.+||..+|.+||++.+++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         200 PGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             CCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            553211100000                    00000000000   0111236789999999999999999999998763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=4.1e-30  Score=238.38  Aligned_cols=203  Identities=16%  Similarity=0.205  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+.+|+.++.++ +|+||+.+...++     .+||||++++.+..+.....++++..+..++.|++.||.|||+. |
T Consensus        47 ~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~-~  125 (290)
T cd05613          47 TTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKL-G  125 (290)
T ss_pred             HHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            457788999999999 5899998874443     35999999764444444456789999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccC--ccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTG--RVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~--~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++||||+|+|||++.++.+||+|||++.......     ...++..|++||.+.+.  .++.++||||||+++|+|+||.
T Consensus       126 i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~  205 (290)
T cd05613         126 IIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGA  205 (290)
T ss_pred             eeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999987654321     34578899999998753  4678999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~  221 (401)
                      .|+...............+..  ....++...+..+.+++.+||+.+|++||     ++.+++.
T Consensus       206 ~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         206 SPFTVDGEKNSQAEISRRILK--SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             CCCCcCCccccHHHHHHHhhc--cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence            987532110000000111111  11234566778899999999999999997     5666654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=7.1e-30  Score=231.91  Aligned_cols=201  Identities=18%  Similarity=0.219  Sum_probs=161.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ....+..|+.++++++|||++.+...+.     .+|+||++++ +...+...   ...+++..+..++.+++.||.|||+
T Consensus        42 ~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~  121 (258)
T cd08215          42 EREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS  121 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999888874332     3499999964 54444432   4789999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      . |++|+||+|+||+++.++.++|+|||++.......    ...+++.|+|||.+.+..++.++||||+|+++++|++|.
T Consensus       122 ~-~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~  200 (258)
T cd08215         122 R-KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLK  200 (258)
T ss_pred             C-CEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCC
Confidence            9 99999999999999999999999999988755432    345788899999998888999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .|+...........    ... ......+...+..+.+++.+||+.+|++|||+.+++..
T Consensus       201 ~p~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         201 HPFEGENLLELALK----ILK-GQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             CCCCCCcHHHHHHH----Hhc-CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            88755422211111    111 11223455677889999999999999999999999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.5e-29  Score=271.23  Aligned_cols=204  Identities=21%  Similarity=0.327  Sum_probs=157.4

Q ss_pred             HHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCCcee
Q 015733           21 IVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT---SKERALY   92 (401)
Q Consensus        21 ~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH   92 (401)
                      ..|+..+.+++|||||++++...     .+||||++|+.+..+..   .++|..+.+++.|++.||+|||   +. +|+|
T Consensus       731 ~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~L~yLH~~~~~-~iiH  806 (968)
T PLN00113        731 SSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR---NLSWERRRKIAIGIAKALRFLHCRCSP-AVVV  806 (968)
T ss_pred             HHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh---cCCHHHHHHHHHHHHHHHHHhccCCCC-Ceec
Confidence            45688999999999999985443     34999999664444432   3899999999999999999999   55 8999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhh--
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL--  170 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~--  170 (401)
                      |||||+||+++.++..++. ||............+++.|+|||++.+..++.++|||||||++|||+||+.||.....  
T Consensus       807 ~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~  885 (968)
T PLN00113        807 GNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVH  885 (968)
T ss_pred             CCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCC
Confidence            9999999999999888876 6665544444445678999999999988999999999999999999999998743210  


Q ss_pred             ----H----HhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          171 ----D----LIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       171 ----~----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                          .    ..........+++....  ..+.....++.+++.+||+.||++|||+.+|++.|+.+.+.
T Consensus       886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        886 GSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS  954 (968)
T ss_pred             CcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence                0    00111122233333322  23445667788999999999999999999999999987653

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=7.8e-30  Score=244.29  Aligned_cols=147  Identities=15%  Similarity=0.225  Sum_probs=126.7

Q ss_pred             HHHHHHHhhhC-CC-----eEEEeeeecc-----ccEeeecCCcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           21 IVSLVLIASMS-SF-----ILLAVIFMFQ-----IPSYEFHCLTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        21 ~~E~~~l~~~~-h~-----niv~~~~~~~-----~~v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..||.+|..++ |-     |+|+.+.++.     .+|+|++.-.|..++.. +..+|+...+..++.||+.||.+||+. 
T Consensus       230 ~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l-  308 (586)
T KOG0667|consen  230 QIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL-  308 (586)
T ss_pred             HHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            45899999998 32     6999985554     45999999777777765 467799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCC--CeEEecccCccccCCCC-ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDV--NPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~--~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||+||||+||||.+.+  .+||+|||.++...... ++.-+..|+|||++.+.+|+.+.||||||||+.||++|.+.|
T Consensus       309 ~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLf  388 (586)
T KOG0667|consen  309 GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLF  388 (586)
T ss_pred             CeeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCcccc
Confidence            999999999999997543  68999999998876653 456688999999999999999999999999999999999888


Q ss_pred             Cch
Q 015733          166 PSH  168 (401)
Q Consensus       166 ~~~  168 (401)
                      ++.
T Consensus       389 pG~  391 (586)
T KOG0667|consen  389 PGD  391 (586)
T ss_pred             CCC
Confidence            663

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=8.1e-30  Score=230.87  Aligned_cols=195  Identities=21%  Similarity=0.215  Sum_probs=156.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...+..|+.++++++|||++.+...+.     ..||||++++.+..+......+++..+..++.|++.||.|||+. ++
T Consensus        36 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~-~~  114 (250)
T cd05123          36 EVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLHSL-GI  114 (250)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4568999999999999999998873333     44999997554443333445799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +|+||+|+||+++.++.++|+|||++......    ....++..|++||...+...+.++|+||||+++|++++|..||.
T Consensus       115 ~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~  194 (250)
T cd05123         115 IYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFY  194 (250)
T ss_pred             eecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999998875443    23457889999999988888999999999999999999999885


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .......    ...+..  ....++...+..+.+++.+||..||++||++.
T Consensus       195 ~~~~~~~----~~~~~~--~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~  239 (250)
T cd05123         195 AEDRKEI----YEKILK--DPLRFPEFLSPEARDLISGLLQKDPTKRLGSG  239 (250)
T ss_pred             CCCHHHH----HHHHhc--CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcc
Confidence            4432111    111111  12245566688899999999999999999994

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.96  E-value=1.1e-29  Score=240.42  Aligned_cols=204  Identities=14%  Similarity=0.158  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      .+.+|+.++++++|||++.+...+.     ..||||++|++...+. ....+++..+..++.|++.||.|||+. |++||
T Consensus        66 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~-~~~~~~~~~~~~~~~ql~~aL~~LH~~-~i~H~  143 (335)
T PTZ00024         66 TTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVD-RKIRLTESQVKCILLQILNGLNVLHKW-YFMHR  143 (335)
T ss_pred             hHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEEeccccCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC-Ceecc
Confidence            5789999999999999998884433     3499999987776664 445689999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCC------------------CccccccccCCccccccC-ccCCCCcchhhHHH
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDG------------------RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTL  154 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------------------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~  154 (401)
                      ||+|+||+++.++.++|+|||++......                  ....+++.|+|||.+.+. .++.++|||||||+
T Consensus       144 dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~  223 (335)
T PTZ00024        144 DLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCI  223 (335)
T ss_pred             cccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHH
Confidence            99999999999999999999998765410                  112357789999998764 46899999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhcccc-----------ccc-----cc---ccc---CCCChHHHHHHHHHHHHhcccCCCC
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQ-----------TLT-----DS---CLE---GQFSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~-----------~~~-----~~---~~~---~~~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      +|+|+||..||..............           ...     .+   ...   .......+..+.++|.+||+.+|++
T Consensus       224 l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  303 (335)
T PTZ00024        224 FAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLE  303 (335)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchh
Confidence            9999999988865421110000000           000     00   000   0011234677899999999999999


Q ss_pred             CCCHHHHHHHHH
Q 015733          213 RPNPRSLVTALV  224 (401)
Q Consensus       213 Rps~~~vl~~l~  224 (401)
                      |||+.+++..-+
T Consensus       304 R~s~~~~l~~~~  315 (335)
T PTZ00024        304 RISAKEALKHEY  315 (335)
T ss_pred             ccCHHHHhcCcc
Confidence            999999987443

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2e-30  Score=251.72  Aligned_cols=218  Identities=17%  Similarity=0.203  Sum_probs=178.1

Q ss_pred             hhhhhhccchhhhhhHHHHHHHHHHhhhCCCeEEEeeee----ccccEeeecC-CcccccccCCCCCCCHHHHHHHHHHH
Q 015733            3 DYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFM----FQIPSYEFHC-LTFSNNFSGETQPMKWAMRLRVALHI   77 (401)
Q Consensus         3 ~~~~~~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~----~~~~v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi   77 (401)
                      ||+.++.   ....+++|+.|+..+.+++|||++++++.    +-.+|++||+ |.|++.+...+.++.-+..+.|..||
T Consensus       731 Kvl~~~t---~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QI  807 (1177)
T KOG1025|consen  731 KVLIEFT---SPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQI  807 (1177)
T ss_pred             EEeeccC---CchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHH
Confidence            3444444   23347899999999999999998777632    2245999999 66888888788899999999999999


Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc-c---c--cccccCCccccccCccCCCCcchhh
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-Y---S--TNLAFTPPEYLRTGRVTPESVMYSF  151 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-~---~--~~~~y~aPE~~~~~~~~~~~Dv~sl  151 (401)
                      ++||.|||++ ++|||||-.+|||+.....+|+.|||+++....... +   .  ..+.|||-|.+....++.++|||||
T Consensus       808 AkgM~YLe~q-rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsf  886 (1177)
T KOG1025|consen  808 AKGMKYLEEQ-RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSF  886 (1177)
T ss_pred             HHHHHHHHhc-chhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhh
Confidence            9999999999 999999999999999999999999999998665432 1   1  2468999999999999999999999


Q ss_pred             HHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          152 GTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       152 G~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||++||++| |..|..+-.     ...+..++....+-..|+.++-++..++.+||..|+..||+++++...+.++.+.
T Consensus       887 GVtiWElmTFGa~Py~gi~-----~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  887 GVTIWELMTFGAKPYDGIP-----AEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             hhhHHHHHhcCCCccCCCC-----HHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence            999999998 666655422     2233344444444566888999999999999999999999999999988776554

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.2e-30  Score=219.56  Aligned_cols=223  Identities=14%  Similarity=0.188  Sum_probs=168.0

Q ss_pred             CchhhhhhccchhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-------------ccEeeecCCcccccccCCCCCCCH
Q 015733            1 MKDYLWQNTCPMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-------------IPSYEFHCLTFSNNFSGETQPMKW   67 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-------------~~v~Ey~~~~l~~~~~~~~~~l~~   67 (401)
                      ||++|.+|.   ....+..-++|+.++..+.|+|++.++.+..             .+||.+|...+..++......++.
T Consensus        47 lkkvlmene---KeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~cehDLaGlLsn~~vr~sl  123 (376)
T KOG0669|consen   47 LKKVLMENE---KEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEHDLAGLLSNRKVRFSL  123 (376)
T ss_pred             HHHHHHhcc---ccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhhhHHHHhcCccccccH
Confidence            578888884   2377888899999999999998666542211             348999988777777766788999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC--c------cccccccCCcccccc
Q 015733           68 AMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--S------YSTNLAFTPPEYLRT  139 (401)
Q Consensus        68 ~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--~------~~~~~~y~aPE~~~~  139 (401)
                      .++.+++.++..||.|+|.. .|+|||+|+.|+||+.+|.+||+|||+++.+....  .      ..-|..|++||.+.+
T Consensus       124 s~Ikk~Mk~Lm~GL~~iHr~-kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG  202 (376)
T KOG0669|consen  124 SEIKKVMKGLMNGLYYIHRN-KILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLG  202 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-hHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhc
Confidence            99999999999999999999 99999999999999999999999999997654322  1      123889999999988


Q ss_pred             -CccCCCCcchhhHHHHHHHHhCCCCCCchhhHH----------------hhhccccccccccccCCC------------
Q 015733          140 -GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL----------------IRDRNIQTLTDSCLEGQF------------  190 (401)
Q Consensus       140 -~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------  190 (401)
                       ..++++.|||+-|||+.||+||.+.+.+.....                +.+..-..+.......+.            
T Consensus       203 ~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~  282 (376)
T KOG0669|consen  203 DREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRL  282 (376)
T ss_pred             ccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhc
Confidence             469999999999999999999998776532110                000000000000000001            


Q ss_pred             -ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          191 -SSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       191 -~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                       |..-..+..+|+..++..||.+|+++.+++.+-....
T Consensus       283 kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~k  320 (376)
T KOG0669|consen  283 KPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWK  320 (376)
T ss_pred             ccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhc
Confidence             1112347889999999999999999999987655443

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=1.3e-29  Score=239.73  Aligned_cols=203  Identities=16%  Similarity=0.194  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeec---------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMF---------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~---------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+.+|+.++.++ +||||++++...         ...++||+.+++...+. ....+++..+..++.||+.||.|||+
T Consensus        45 ~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~  123 (332)
T cd07857          45 AKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELMEADLHQIIR-SGQPLTDAHFQSFIYQILCGLKYIHS  123 (332)
T ss_pred             HHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEecccCCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45788999999999 599999987421         13378888877766654 45679999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCcccccc-CccCCCCcchhhHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~e  157 (401)
                      . |++||||||+||+++.++.+||+|||+++.....        ....|+..|+|||.+.+ ..++.++|||||||++|+
T Consensus       124 ~-givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~  202 (332)
T cd07857         124 A-NVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAE  202 (332)
T ss_pred             C-CcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9 9999999999999999999999999998764321        12357889999998766 468999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhh-----------ccccccccc-----------ccc---CCCChHHHHHHHHHHHHhcccCCCC
Q 015733          158 LLSGKHIPPSHALDLIRD-----------RNIQTLTDS-----------CLE---GQFSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~-----------~~~~~~~~~-----------~~~---~~~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      +++|..||..........           .....+..+           ...   .......+..+.+++.+||+.||.+
T Consensus       203 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  282 (332)
T cd07857         203 LLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTK  282 (332)
T ss_pred             HHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCccc
Confidence            999998875422100000           000000000           000   0011224678999999999999999


Q ss_pred             CCCHHHHHH
Q 015733          213 RPNPRSLVT  221 (401)
Q Consensus       213 Rps~~~vl~  221 (401)
                      |||+.+++.
T Consensus       283 R~t~~~ll~  291 (332)
T cd07857         283 RISVEEALE  291 (332)
T ss_pred             CCCHHHHhc
Confidence            999999986

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.96  E-value=1.6e-29  Score=238.49  Aligned_cols=204  Identities=16%  Similarity=0.253  Sum_probs=155.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+..|+.++.+++|||++.+...+.      .+|+||+++++...+.  ..++++..+..++.|++.||.|||+. |
T Consensus        52 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~~~~L~~~~~--~~~~~~~~~~~~~~ql~~aL~~LH~~-~  128 (328)
T cd07856          52 LAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELLGTDLHRLLT--SRPLEKQFIQYFLYQILRGLKYVHSA-G  128 (328)
T ss_pred             hhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehhccCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3577889999999999999999884432      3499999877665553  34688999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ++||||+|+||+++.++.++|+|||.+...... ....++..|+|||.+.+ ..++.++|||||||++|+|+||..||..
T Consensus       129 iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~  208 (328)
T cd07856         129 VVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG  208 (328)
T ss_pred             cccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999998765433 23456789999999876 5689999999999999999999988854


Q ss_pred             hhhHHhh-------------------hcccccccccc-ccCCCC-----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIR-------------------DRNIQTLTDSC-LEGQFS-----SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~-------------------~~~~~~~~~~~-~~~~~~-----~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......                   ......+.... .....+     +..+..+.++|.+||+.+|.+|||+.+++..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         209 KDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             CCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            3211000                   00000000000 001111     2356789999999999999999999999764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.5e-29  Score=240.55  Aligned_cols=204  Identities=15%  Similarity=0.179  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      +.+.+.+|+.++.+++||||++++..+.           ..+++++.+++...+.  ...+++..+..++.|++.||.||
T Consensus        59 ~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~~~~L~~~~~--~~~l~~~~~~~i~~qi~~aL~~L  136 (345)
T cd07877          59 HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK--CQKLTDDHVQFLIYQILRGLKYI  136 (345)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhcccCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999884331           2367777665555443  24689999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. |++||||||+||+++.++.+||+|||++....... ...++..|+|||.+.+ ..++.++|||||||++|+|++|+
T Consensus       137 H~~-~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~  215 (345)
T cd07877         137 HSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  215 (345)
T ss_pred             HHC-CeeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCC
Confidence            999 99999999999999999999999999988755432 3467889999999876 46889999999999999999999


Q ss_pred             CCCCchhhHHhhhcc-------ccccc---------------cccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRN-------IQTLT---------------DSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~-------~~~~~---------------~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||............       ...+.               ......   ......+..+.++|.+||+.||.+|||+.
T Consensus       216 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~  295 (345)
T cd07877         216 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA  295 (345)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHH
Confidence            987542211000000       00000               000000   00112466789999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++.+
T Consensus       296 e~l~h  300 (345)
T cd07877         296 QALAH  300 (345)
T ss_pred             HHhcC
Confidence            99875

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-29  Score=232.59  Aligned_cols=204  Identities=12%  Similarity=0.206  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGET-QPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+|+..+.+++ |||++.++..+.     ..||||++|++...+.... ..+++..+..++.|++.||.|||++ |+
T Consensus        42 ~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~-~i  120 (283)
T cd07830          42 CMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH-GF  120 (283)
T ss_pred             HHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            34567999999999 999998884333     3499999877777665543 5789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +|+||+|+||++++++.++|+|||++.......   ...++..|+|||.+.. ..++.++|+||||+++++|++|..||.
T Consensus       121 ~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~  200 (283)
T cd07830         121 FHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFP  200 (283)
T ss_pred             ccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccC
Confidence            999999999999999999999999988755432   3456888999998864 457899999999999999999998875


Q ss_pred             chhhHHhhhcc-----------------cccccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRN-----------------IQTLTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~-----------------~~~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...........                 ..........       .......+..+.++|.+||+.+|.+|||+.+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         201 GSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             CCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            43211000000                 0000000000       01111225779999999999999999999998753

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.96  E-value=2.3e-29  Score=229.51  Aligned_cols=199  Identities=13%  Similarity=0.172  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS---GETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..++..|+.++.+++|||++.+...+.     .+||||++++ +...+.   .....+++..+..++.|++.||.|||+.
T Consensus        46 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  125 (260)
T cd08222          46 TVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR  125 (260)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc
Confidence            446778999999999999998873332     3499999965 433332   2356799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                       |++|+||+|+||++++ +.++|+|||++......    ....+++.|++||.+.+..++.++|+||||+++|+|++|..
T Consensus       126 -~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~  203 (260)
T cd08222         126 -RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAH  203 (260)
T ss_pred             -CccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence             9999999999999975 56999999998765432    23457889999999988888999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.........    .... .......+..++.++.++|.+||+.+|++||++.++++.
T Consensus       204 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         204 AFEGQNFLSVV----LRIV-EGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             CCCCccHHHHH----HHHH-cCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence            87543211111    1111 111223456778899999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=1.2e-29  Score=233.66  Aligned_cols=198  Identities=20%  Similarity=0.258  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+..|+.++.+++ |||++.++..+.     ..||||++++.+..+......+++..+..++.|++.||.|||+. |+
T Consensus        45 ~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~-~~  123 (280)
T cd05581          45 VKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSK-GI  123 (280)
T ss_pred             HHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            367889999999999 999998884433     34999997654444444556899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC------------------------ccccccccCCccccccCccCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------------------------SYSTNLAFTPPEYLRTGRVTPES  146 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------------------------~~~~~~~y~aPE~~~~~~~~~~~  146 (401)
                      +|+||+|+||+++.++.++|+|||++.......                        ...++..|++||.+.+...+.++
T Consensus       124 ~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~  203 (280)
T cd05581         124 IHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSS  203 (280)
T ss_pred             eecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhh
Confidence            999999999999999999999999987644321                        12457889999999888899999


Q ss_pred             cchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH----HHHHH
Q 015733          147 VMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP----RSLVT  221 (401)
Q Consensus       147 Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~----~~vl~  221 (401)
                      ||||||++++++++|..||........    ...+.  .....++...+..+.+++.+||+.+|++|||+    .+++.
T Consensus       204 Di~slG~~l~~l~~g~~p~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         204 DLWALGCIIYQMLTGKPPFRGSNEYLT----FQKIL--KLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCccHHHH----HHHHH--hcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            999999999999999998765421111    11111  11224556678889999999999999999999    77764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2e-29  Score=239.40  Aligned_cols=203  Identities=13%  Similarity=0.182  Sum_probs=155.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.+.+|+.++++++||||+.+...+.           .+||||+.+++...+.  ...+++..+..++.|++.||.||
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~--~~~l~~~~~~~i~~qi~~al~~L  134 (343)
T cd07880          57 FAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMK--HEKLSEDRIQFLVYQMLKGLKYI  134 (343)
T ss_pred             HHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecCCCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999998874332           4589999666555543  35799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. |++||||||+||+++.++.++|+|||++....... ...+++.|++||.+.+ ..++.++|+|||||++|++++|.
T Consensus       135 H~~-gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~  213 (343)
T cd07880         135 HAA-GIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK  213 (343)
T ss_pred             HhC-CeecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            999 99999999999999999999999999988755432 3467889999999876 45889999999999999999999


Q ss_pred             CCCCchhhHHhhhcc-------------------cccccccc--cc----CCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRN-------------------IQTLTDSC--LE----GQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~-------------------~~~~~~~~--~~----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||............                   ........  ..    ......++..+.++|.+||+.||.+|||+.
T Consensus       214 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~  293 (343)
T cd07880         214 PLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAA  293 (343)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHH
Confidence            988643211000000                   00000000  00    011234566789999999999999999999


Q ss_pred             HHHH
Q 015733          218 SLVT  221 (401)
Q Consensus       218 ~vl~  221 (401)
                      +++.
T Consensus       294 ~~l~  297 (343)
T cd07880         294 EALA  297 (343)
T ss_pred             HHhc
Confidence            9985

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=1.7e-29  Score=239.92  Aligned_cols=204  Identities=14%  Similarity=0.174  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-------------------cccEeeecCCcccccccCCCCCCCHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-------------------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALH   76 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-------------------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~q   76 (401)
                      ..+.+.+|+.++++++|||++.++...                   ...||||+++++...+.  ...+++..+..++.|
T Consensus        45 ~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~--~~~l~~~~~~~~~~q  122 (342)
T cd07854          45 SVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLE--QGPLSEEHARLFMYQ  122 (342)
T ss_pred             hHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeecccccHHHHHH--cCCCCHHHHHHHHHH
Confidence            346788999999999999999877321                   13599999876655553  346899999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEECC-CCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCc
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESV  147 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~D  147 (401)
                      |+.||.|||+. |++||||||+||+++. ++.+||+|||.+......       ....++..|+|||.+.+ ..++.++|
T Consensus       123 i~~aL~~LH~~-givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  201 (342)
T cd07854         123 LLRGLKYIHSA-NVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAID  201 (342)
T ss_pred             HHHHHHHHHhC-CcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhh
Confidence            99999999999 9999999999999974 567899999998764322       11246788999998765 45788999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhhhccc-------------------cccccccccC-----CCChHHHHHHHHHHH
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIRDRNI-------------------QTLTDSCLEG-----QFSSDEGTELVRLAS  203 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~~-----~~~~~~~~~l~~li~  203 (401)
                      ||||||++|+|++|+.||.............                   ..........     .+....+.++.++|.
T Consensus       202 iwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  281 (342)
T cd07854         202 MWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLE  281 (342)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHH
Confidence            9999999999999999985431100000000                   0000000000     011235678899999


Q ss_pred             HhcccCCCCCCCHHHHHHH
Q 015733          204 RCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       204 ~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||+.||.+|||+.+++.+
T Consensus       282 ~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         282 QILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             HHhCCCchhccCHHHHhCC
Confidence            9999999999999999863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.2e-29  Score=240.94  Aligned_cols=204  Identities=17%  Similarity=0.226  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      +...+.+|+.++++++|||++.+...+           ...|+||+++++...+..  .++++..+..++.|++.||.||
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~l~~~~~~~~~~ql~~aL~~L  134 (343)
T cd07851          57 HAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKC--QKLSDDHIQFLVYQILRGLKYI  134 (343)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecCCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            446788899999999999988765221           245999997776665543  5699999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. |++||||+|+||+++.++.++|+|||++...... ....++..|+|||.+.+ ..++.++|||||||++|+++||+
T Consensus       135 H~~-gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~  213 (343)
T cd07851         135 HSA-GIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGK  213 (343)
T ss_pred             HHC-CeecCCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999998875443 33457888999999865 46789999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-------c------------cccc---cccCC---CChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRNIQ-------T------------LTDS---CLEGQ---FSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-------~------------~~~~---~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||..............       .            .+..   .....   .....+..+.++|.+||+.+|.+|||+.
T Consensus       214 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~  293 (343)
T cd07851         214 TLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAA  293 (343)
T ss_pred             CCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHH
Confidence            98864321110000000       0            0000   00000   0112467899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +|+.+
T Consensus       294 ell~h  298 (343)
T cd07851         294 EALAH  298 (343)
T ss_pred             HHhcC
Confidence            99864

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-30  Score=223.67  Aligned_cols=202  Identities=13%  Similarity=0.184  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeee-eccc----cEeeecCCcccccccC----CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIF-MFQI----PSYEFHCLTFSNNFSG----ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~-~~~~----~v~Ey~~~~l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+|+.|.....+- +-||||++++ .|..    .-||+|+-+++.++..    .+..+++...-.|+.-.+.||+||-..
T Consensus       107 ~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~  186 (361)
T KOG1006|consen  107 KRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE  186 (361)
T ss_pred             HHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH
Confidence            5688898877665 4599999993 3331    1799999776666543    467799999999999999999999877


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc--CccCCCCcchhhHHHHHHHHhCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      -.||||||||+|||++..|.+||||||.+.....+   +.-.|-..|||||.+..  ..|+.+|||||||++|||+.||.
T Consensus       187 lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~  266 (361)
T KOG1006|consen  187 LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGN  266 (361)
T ss_pred             hhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCC
Confidence            68999999999999999999999999998765443   33456789999999875  34899999999999999999999


Q ss_pred             CCCCchhhHHhhhcccccccc---ccccCC-CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTD---SCLEGQ-FSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .|+..|..-.   ..+..++.   +.+..+ -....+..+..+|..||.+|-+.||+..++...
T Consensus       267 fPyr~w~svf---eql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  267 FPYRKWDSVF---EQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             CCcchHHHHH---HHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            9987764321   11111111   111111 112368889999999999999999999998763

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-29  Score=232.70  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=172.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      -|.++.+.|-.++.+.+.|.||+++..+.     ++.||-|-||-.+.+.+.++.++..+...++..++.|++|||++ |
T Consensus       462 kQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k-~  540 (732)
T KOG0614|consen  462 KQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRK-G  540 (732)
T ss_pred             hHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhc-C
Confidence            47788999999999999999999985444     33778887887777777889999999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||.|||||+|.+++.+|-+||.|||+++....+.   ++||||.|.|||++.....+..+|.||||+++|||+||.+||.
T Consensus       541 iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs  620 (732)
T KOG0614|consen  541 IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFS  620 (732)
T ss_pred             ceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999999977653   6899999999999999899999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTAL  223 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~l  223 (401)
                      +...-.....++    .-.-...+|..++....+||+++...+|.+|..     +.+|-.+-
T Consensus       621 ~~dpmktYn~IL----kGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~  678 (732)
T KOG0614|consen  621 GVDPMKTYNLIL----KGIDKIEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHR  678 (732)
T ss_pred             CCchHHHHHHHH----hhhhhhhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhh
Confidence            643222222222    222234678889999999999999999999965     66776543

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.96  E-value=7.9e-29  Score=238.46  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=129.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccC---CCCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSG---ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~---~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      -++.-.+|+.++++++|||||+++...+           .+|||||.||.+.-..+   +...|++.+.+.+..+++.||
T Consensus        54 ~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al  133 (732)
T KOG4250|consen   54 PRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSAL  133 (732)
T ss_pred             hHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHH
Confidence            3577788999999999999999994333           23999999765554443   356799999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEEC--CCCC--eEEecccCccccCCCC---ccccccccCCcccccc-CccCCCCcchhhHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFD--DDVN--PRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRT-GRVTPESVMYSFGT  153 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~--~~~~--~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~  153 (401)
                      .|||++ ||+||||||.||++.  .+|.  -||+|||.|+......   +..||..|++||.+.. ..|+..+|.|||||
T Consensus       134 ~~LrEn-~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~Gv  212 (732)
T KOG4250|consen  134 RHLREN-GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGV  212 (732)
T ss_pred             HHHHHc-CceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhh
Confidence            999999 999999999999984  3343  4999999999987764   5679999999999985 78899999999999


Q ss_pred             HHHHHHhCCCCCCc
Q 015733          154 LLLDLLSGKHIPPS  167 (401)
Q Consensus       154 ~l~el~tg~~p~~~  167 (401)
                      ++|+.+||..||..
T Consensus       213 tlY~caTG~lPF~p  226 (732)
T KOG4250|consen  213 TLYECATGELPFIP  226 (732)
T ss_pred             HHHHHhccCCCCCc
Confidence            99999999999854

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.6e-28  Score=222.77  Aligned_cols=202  Identities=15%  Similarity=0.217  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeeccc------cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC-CC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQI------PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK-ER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~~------~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~-~~   89 (401)
                      .+.-.+|-.+-+.++||.||+++..+..      -|+|||+|..++.+....+.++++++..|+.||+.||.||.+. ++
T Consensus       511 hKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpP  590 (775)
T KOG1151|consen  511 HKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPP  590 (775)
T ss_pred             HHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3556789999999999999999954442      2999999988888887888999999999999999999999876 57


Q ss_pred             ceeccCCCCCEEECC---CCCeEEecccCccccCCCC-----------ccccccccCCccccccC----ccCCCCcchhh
Q 015733           90 ALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDGR-----------SYSTNLAFTPPEYLRTG----RVTPESVMYSF  151 (401)
Q Consensus        90 ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~~-----------~~~~~~~y~aPE~~~~~----~~~~~~Dv~sl  151 (401)
                      |||-||||.|||+-+   -|.+||.|||+++......           ...||.+|++||++.-+    +.+.+.||||+
T Consensus       591 IIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSv  670 (775)
T KOG1151|consen  591 IIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSV  670 (775)
T ss_pred             eeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEee
Confidence            999999999999954   4779999999999865431           24579999999998754    57899999999


Q ss_pred             HHHHHHHHhCCCCCCchhhH--Hhhhcccccccccc-ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          152 GTLLLDLLSGKHIPPSHALD--LIRDRNIQTLTDSC-LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |||+|..+.|+.||...-..  .....   .++... ...+.-+.++.+..++|++||+..-.+|....++..
T Consensus       671 GVIFyQClYGrKPFGhnqsQQdILqeN---TIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  671 GVIFYQCLYGRKPFGHNQSQQDILQEN---TILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             ehhhhhhhccCCCCCCchhHHHHHhhh---chhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence            99999999999998654211  11111   111111 111122457888999999999999999988777643

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=1.6e-28  Score=210.54  Aligned_cols=166  Identities=14%  Similarity=0.120  Sum_probs=125.8

Q ss_pred             CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCcccccccc
Q 015733           52 LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAF  131 (401)
Q Consensus        52 ~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y  131 (401)
                      |++.+.+...+.++++..++.++.|++.||.|||+. +      ||+|||++.++.+|+  ||+++...... ..||+.|
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~-~------kp~Nil~~~~~~~~~--fG~~~~~~~~~-~~g~~~y   70 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQ-A------KSGNILLTWDGLLKL--DGSVAFKTPEQ-SRVDPYF   70 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc-C------CcccEeEcCccceee--ccceEeecccc-CCCcccc
Confidence            445555555567799999999999999999999999 6      999999999999999  99988765433 3678999


Q ss_pred             CCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH-hhhccccccccccc-cCCCChHHHH--HHHHHHHHhcc
Q 015733          132 TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL-IRDRNIQTLTDSCL-EGQFSSDEGT--ELVRLASRCLQ  207 (401)
Q Consensus       132 ~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~--~l~~li~~cl~  207 (401)
                      +|||++.+..++.++|||||||++|||+||+.||....... .............. ....+...+.  ++.++|.+||+
T Consensus        71 ~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~  150 (176)
T smart00750       71 MAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCAS  150 (176)
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999875432100 00000101000000 0112233343  69999999999


Q ss_pred             cCCCCCCCHHHHHHHHHccc
Q 015733          208 YEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .+|.+|||+.+++.++....
T Consensus       151 ~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      151 RLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             cccccccCHHHHHHHHHHHH
Confidence            99999999999999887654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=4.1e-29  Score=226.16  Aligned_cols=186  Identities=18%  Similarity=0.213  Sum_probs=152.4

Q ss_pred             HHHHHhhhCC-CeEEEeeeecccc-----EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Q 015733           23 SLVLIASMSS-FILLAVIFMFQIP-----SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLN   96 (401)
Q Consensus        23 E~~~l~~~~h-~niv~~~~~~~~~-----v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk   96 (401)
                      |-.+|.-... |.++++..++|.+     ||||+.|+.+-.....-+.+-++.+..++..|+-||-|||++ |||.||||
T Consensus       399 EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~k-gIiYRDLK  477 (683)
T KOG0696|consen  399 EKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSK-GIIYRDLK  477 (683)
T ss_pred             hhhheecCCCCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcC-Ceeeeecc
Confidence            4444443333 4466666666633     999999887666666667789999999999999999999999 99999999


Q ss_pred             CCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH
Q 015733           97 AYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL  172 (401)
Q Consensus        97 ~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~  172 (401)
                      .+|||++.+|++||+|||+++..-    .+.+++|||-|+|||++...+|+..+|.|||||+||||+.|++||.+...+.
T Consensus       478 LDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e  557 (683)
T KOG0696|consen  478 LDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE  557 (683)
T ss_pred             ccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence            999999999999999999998732    2357899999999999999999999999999999999999999998865443


Q ss_pred             hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ....+    .+.  .-.+|...+.+..++....|.+.|.+|..
T Consensus       558 lF~aI----~eh--nvsyPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  558 LFQAI----MEH--NVSYPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             HHHHH----HHc--cCcCcccccHHHHHHHHHHhhcCCccccC
Confidence            32222    222  22578899999999999999999999954

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=8.3e-29  Score=217.77  Aligned_cols=201  Identities=14%  Similarity=0.156  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ++-.+|+.++..+.|+|+++.+..+.           ..|||||+.++......   .++-+++..++.|+++|+.|||+
T Consensus        60 kra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~~---elDH~tis~i~yq~~~~ik~lhs  136 (369)
T KOG0665|consen   60 KRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVILM---ELDHETISYILYQMLCGIKHLHS  136 (369)
T ss_pred             hhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999883332           34999999888777763   37788899999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      . ||+||||||+||++..+..+||.|||+++.....   +.+..|..|.|||++.+..+...+||||+||++.||++|..
T Consensus       137 ~-~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~V  215 (369)
T KOG0665|consen  137 A-GIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTV  215 (369)
T ss_pred             c-ceeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceE
Confidence            9 9999999999999999999999999999886544   34556789999999999889999999999999999999998


Q ss_pred             CCCchhhHH-h--------------------------------hhcccccccccc-ccC--CCChHHHHHHHHHHHHhcc
Q 015733          164 IPPSHALDL-I--------------------------------RDRNIQTLTDSC-LEG--QFSSDEGTELVRLASRCLQ  207 (401)
Q Consensus       164 p~~~~~~~~-~--------------------------------~~~~~~~~~~~~-~~~--~~~~~~~~~l~~li~~cl~  207 (401)
                      .|.+...-. +                                ......+++... +..  +.++..+..+++++.+||-
T Consensus       216 lf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLv  295 (369)
T KOG0665|consen  216 LFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLV  295 (369)
T ss_pred             EecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhc
Confidence            876521000 0                                000011111111 110  1122345668899999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 015733          208 YEPRERPNPRSLVTA  222 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~  222 (401)
                      .||++|.|+.+++.+
T Consensus       296 i~pe~Risv~daL~H  310 (369)
T KOG0665|consen  296 IDPEKRISVDDALRH  310 (369)
T ss_pred             cChhhcccHHHHhcC
Confidence            999999999999874

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=1.2e-28  Score=215.86  Aligned_cols=209  Identities=13%  Similarity=0.188  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeee---ecc---ccEeeecCCcccccccC----CCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIF---MFQ---IPSYEFHCLTFSNNFSG----ETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~---~~~---~~v~Ey~~~~l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      -+..-.+|+-+++.++|||++.+..   ..+   .+++||.+-.+...++.    ..+.++...+..++.||+.|+.|||
T Consensus        70 iS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH  149 (438)
T KOG0666|consen   70 ISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH  149 (438)
T ss_pred             cCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh
Confidence            3556789999999999999887662   212   34999999888776643    3467999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCC----CCeEEecccCccccCCC-------CccccccccCCccccccC-ccCCCCcchhhHH
Q 015733           86 SKERALYHDLNAYRIVFDDD----VNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGT  153 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~----~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~  153 (401)
                      ++ =|+||||||.|||+..+    |.|||+|||+++.....       ....-|+.|.|||.+.+. .||.+.||||+||
T Consensus       150 ~N-WvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGC  228 (438)
T KOG0666|consen  150 SN-WVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGC  228 (438)
T ss_pred             hh-heeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHH
Confidence            99 69999999999999887    99999999999986543       233458999999999985 5999999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhc-----ccc------------------------ccccccccCCC-C----------hH
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDR-----NIQ------------------------TLTDSCLEGQF-S----------SD  193 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~-----~~~------------------------~~~~~~~~~~~-~----------~~  193 (401)
                      |..||+|-.+.|.+.........     .+.                        ..+.......+ +          ..
T Consensus       229 IfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~  308 (438)
T KOG0666|consen  229 IFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKV  308 (438)
T ss_pred             HHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcC
Confidence            99999999887754311110000     000                        00000000000 0          00


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          194 EGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       194 ~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      -++...+|+.++|+.||.+|.|+++.++..-.
T Consensus       309 k~~~a~~LL~klL~yDP~kRIta~qAleh~yF  340 (438)
T KOG0666|consen  309 KDPSALDLLQKLLTYDPIKRITAEQALEHPYF  340 (438)
T ss_pred             CCchHHHHHHHHhccCchhhccHHHHhccccc
Confidence            13447899999999999999999999886543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-28  Score=245.68  Aligned_cols=205  Identities=16%  Similarity=0.156  Sum_probs=164.6

Q ss_pred             chhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           11 PMIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        11 ~~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      |+.|.-.--|..|-.++.--+.+=|+.+.+.|+     ++|||||+|| ++.++. +..++|+..+..++..|+-||.-|
T Consensus       113 MlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlS-k~~~~pE~~ArFY~aEiVlAldsl  191 (1317)
T KOG0612|consen  113 MLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLS-KFDRLPEDWARFYTAEIVLALDSL  191 (1317)
T ss_pred             HhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccCchHHHHHh-hcCCChHHHHHHHHHHHHHHHHHH
Confidence            555777888899999998666666888887777     3499999976 455554 434899999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCC-C----CccccccccCCcccccc-----CccCCCCcchhhHHH
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-G----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTL  154 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~  154 (401)
                      |+. |+|||||||+|||||..|++||+|||.+..... +    ....|||-|.+||++..     +.|++.+|.||+||+
T Consensus       192 H~m-gyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~  270 (1317)
T KOG0612|consen  192 HSM-GYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVF  270 (1317)
T ss_pred             Hhc-cceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHH
Confidence            999 999999999999999999999999998877653 3    24579999999999973     569999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccccccCCCC--hHHHHHHHHHHHHhcccCCCCCCC---HHHHHHH
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRERPN---PRSLVTA  222 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~~p~~Rps---~~~vl~~  222 (401)
                      +|||+.|..||+....-.....    +++..-.-.||  ..++.+..+||.+.+. +|+.|..   ++++..+
T Consensus       271 ~YEMlyG~TPFYadslveTY~K----Im~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  271 MYEMLYGETPFYADSLVETYGK----IMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNH  338 (1317)
T ss_pred             HHHHHcCCCcchHHHHHHHHHH----HhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhC
Confidence            9999999999987654433332    22222223455  4589999999999886 6788877   8888763

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=4.5e-28  Score=217.62  Aligned_cols=199  Identities=18%  Similarity=0.229  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|..|+..+++++|+|++.+.....     ..++||+++ ++...+. ....+++..+..++.+++.++.+||+. ++
T Consensus        31 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i  108 (244)
T smart00220       31 RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK-KRGRLSEDEARFYARQILSALEYLHSN-GI  108 (244)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHc-Ce
Confidence            579999999999999999888773322     349999997 5555444 333489999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +|+||+|+||+++.++.++|+|||.+......   ....++..|++||.+.+..++.++||||||++++++++|..|+..
T Consensus       109 ~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      109 IHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             ecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999998876553   345678899999999888889999999999999999999988754


Q ss_pred             h-hhHHhhhccccccccccccCCCC-hHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          168 H-ALDLIRDRNIQTLTDSCLEGQFS-SDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       168 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      . .....    ...+.......... ..++.++.+++.+||..+|++||++.++++
T Consensus       189 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      189 DDQLLEL----FKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             CCcHHHH----HHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence            2 11111    11111111110111 116788999999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.4e-28  Score=245.55  Aligned_cols=169  Identities=21%  Similarity=0.295  Sum_probs=131.3

Q ss_pred             EeeecCCcccccccCCCCCC-CHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccC----
Q 015733           46 SYEFHCLTFSNNFSGETQPM-KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR----  120 (401)
Q Consensus        46 v~Ey~~~~l~~~~~~~~~~l-~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~----  120 (401)
                      -||||+.+++..+.+.+... .....++++++|+.||.|+|++ |+|||||||.||+++.++.|||+|||+++...    
T Consensus       674 QMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~-giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~  752 (1351)
T KOG1035|consen  674 QMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQ-GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLE  752 (1351)
T ss_pred             EHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhC-ceeeccCCcceeEEcCCCCeeecccccchhhhhhhh
Confidence            48999988888777666555 5677899999999999999999 99999999999999999999999999998721    


Q ss_pred             ------------------CCCccccccccCCccccccC---ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccc
Q 015733          121 ------------------DGRSYSTNLAFTPPEYLRTG---RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQ  179 (401)
Q Consensus       121 ------------------~~~~~~~~~~y~aPE~~~~~---~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~  179 (401)
                                        ..++..||.-|+|||.+.+.   +|+.|+|+||+|||++||+.-   |......   ...+.
T Consensus       753 ~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~TsMER---a~iL~  826 (1351)
T KOG1035|consen  753 SIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGTSMER---ASILT  826 (1351)
T ss_pred             hHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCchHHH---HHHHH
Confidence                              11345688999999999874   599999999999999999963   4432211   12222


Q ss_pred             cccccccc--CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          180 TLTDSCLE--GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       180 ~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .+.+..++  ..+.....+.-..+|+++++.||++|||+.+++.
T Consensus       827 ~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  827 NLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             hcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence            22222221  2233444556678999999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.8e-28  Score=256.71  Aligned_cols=170  Identities=15%  Similarity=0.121  Sum_probs=126.9

Q ss_pred             EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECC-------------------CC
Q 015733           46 SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDD-------------------DV  106 (401)
Q Consensus        46 v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~-------------------~~  106 (401)
                      ++||++++|...+.....++++.+++.++.||+.||.|||++ ||+||||||+||||+.                   ++
T Consensus        58 ~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~-gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~  136 (793)
T PLN00181         58 ALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQ-GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDA  136 (793)
T ss_pred             hhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhC-CeeeccCCchhEEEcccCcEEEeeccccCcccccccC
Confidence            789988887777765567799999999999999999999999 9999999999999954                   45


Q ss_pred             CeEEecccCccccCCC--------------------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733          107 NPRLSCFGLMKNSRDG--------------------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus       107 ~~kl~Dfg~~~~~~~~--------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      .+|++|||+++.....                    ....||+.|||||++.+..++.++|||||||+||||++|..|+.
T Consensus       137 ~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~  216 (793)
T PLN00181        137 TTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSRE  216 (793)
T ss_pred             cccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchh
Confidence            5677777776542110                    01246788999999999899999999999999999999887754


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ..... .. .......    .... ........+++.+||+++|.+|||+.+|+++-
T Consensus       217 ~~~~~-~~-~~~~~~~----~~~~-~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~  266 (793)
T PLN00181        217 EKSRT-MS-SLRHRVL----PPQI-LLNWPKEASFCLWLLHPEPSCRPSMSELLQSE  266 (793)
T ss_pred             hHHHH-HH-HHHHhhc----Chhh-hhcCHHHHHHHHHhCCCChhhCcChHHHhhch
Confidence            32111 00 0001111    1111 11234567899999999999999999998743

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=5e-28  Score=196.42  Aligned_cols=205  Identities=16%  Similarity=0.251  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      +..-++||.+++.+.|.|||+++....     .+|+|||+..+...+..-++.++.+.+..++.|+++||.|+|++ +++
T Consensus        45 pssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchsh-nvl  123 (292)
T KOG0662|consen   45 PSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSH-NVL  123 (292)
T ss_pred             cHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhh-hhh
Confidence            456789999999999999999983332     45999999888888887788999999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCc-cCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                      |||+||.|.||+.+|.+|++|||+++.++-..    ...-|..|.+|.++.+.+ |+...|+||-||++.|+.. |++.|
T Consensus       124 hrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplf  203 (292)
T KOG0662|consen  124 HRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_pred             hccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCC
Confidence            99999999999999999999999999866442    234588999999999865 8889999999999999986 45556


Q ss_pred             CchhhHHhhhccc--------------cccccccccCCCC---------hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNI--------------QTLTDSCLEGQFS---------SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ++......-..+.              ..+.+-...+.+|         +.....-++++...|.-+|.+|.++++.++.
T Consensus       204 pg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  204 PGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence            5543222111111              1111111111222         2234456889999999999999999988763

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.95  E-value=1.7e-28  Score=228.13  Aligned_cols=203  Identities=20%  Similarity=0.195  Sum_probs=165.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecccc-----EeeecCCcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQIP-----SYEFHCLTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~~~-----v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .|.....+|+.+|.++.||.||.+..+++.+     |||-+.|..+..+.. +.+.|++.....++.||+.||.|||-+ 
T Consensus       605 kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k-  683 (888)
T KOG4236|consen  605 KQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK-  683 (888)
T ss_pred             chHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-
Confidence            4578889999999999999999998777754     899998887766654 678899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCC---CCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           89 RALYHDLNAYRIVFDDD---VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ||+|+||||+|||+.+.   -.+||||||+++..+..   .+..|||.|+|||++....|...-|+||+|||+|--+.|.
T Consensus       684 nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGT  763 (888)
T KOG4236|consen  684 NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGT  763 (888)
T ss_pred             ceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEeccc
Confidence            99999999999999754   35899999999998764   4678999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||..+..  +... ++. ..-...+..-.+++....+||...|+..-.+|-|....+.+
T Consensus       764 FPFNEdEd--IndQ-IQN-AaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh  819 (888)
T KOG4236|consen  764 FPFNEDED--INDQ-IQN-AAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSH  819 (888)
T ss_pred             ccCCCccc--hhHH-hhc-cccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            98854311  1111 100 00011122235678889999999999999999998877653

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.2e-28  Score=212.59  Aligned_cols=183  Identities=15%  Similarity=0.212  Sum_probs=150.2

Q ss_pred             hCCCeEEEeeeecccc-----EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECC
Q 015733           30 MSSFILLAVIFMFQIP-----SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDD  104 (401)
Q Consensus        30 ~~h~niv~~~~~~~~~-----v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~  104 (401)
                      -+||.+|++..+++..     |.||++|+.+-....+.+.||++.+..+...|+-||+|||++ |||.||||..|+|+|.
T Consensus       308 sn~pflvglhscfqtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~r-giiyrdlkldnvllda  386 (593)
T KOG0695|consen  308 SNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHER-GIIYRDLKLDNVLLDA  386 (593)
T ss_pred             cCCCeEEehhhhhcccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhc-CeeeeeccccceEEcc
Confidence            4789999999887743     999999886665555778899999999999999999999999 9999999999999999


Q ss_pred             CCCeEEecccCccccC----CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhc---c
Q 015733          105 DVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR---N  177 (401)
Q Consensus       105 ~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~---~  177 (401)
                      .|++||.|+|.++..-    .+.+++|||.|.|||++.+..|+...|.|++||+++||+.|+.||.--..+.....   .
T Consensus       387 eghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedy  466 (593)
T KOG0695|consen  387 EGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDY  466 (593)
T ss_pred             CCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHH
Confidence            9999999999988732    23568999999999999999999999999999999999999999853222111111   1


Q ss_pred             -ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          178 -IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                       .+-++...+  .+|...+.....+++..|++||.+|..
T Consensus       467 lfqvilekqi--riprslsvkas~vlkgflnkdp~erlg  503 (593)
T KOG0695|consen  467 LFQVILEKQI--RIPRSLSVKASHVLKGFLNKDPKERLG  503 (593)
T ss_pred             HHHHHhhhcc--cccceeehhhHHHHHHhhcCCcHHhcC
Confidence             122222222  357778888999999999999999853

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.95  E-value=2.1e-27  Score=243.11  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|..|+.++..++||||+.++..+.     .+||||+.|+.+..+....+.+++..++.++.||+.||.|||++ +||
T Consensus        48 ~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~-gIi  126 (669)
T cd05610          48 VHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRH-GII  126 (669)
T ss_pred             HHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-CEE
Confidence            367889999999999999999884443     45999998754444444456789999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCcc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMK  117 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~  117 (401)
                      ||||||+|||++.++.+||+|||+++
T Consensus       127 HrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610         127 HRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             eCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=7.8e-28  Score=211.45  Aligned_cols=205  Identities=18%  Similarity=0.180  Sum_probs=156.2

Q ss_pred             hhhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           15 LQSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.+.++|+.++.+- .|+||+.++..++     ++|||-|.|| ++..+. +.+.+++.++.++..+|+.||.|||.+
T Consensus       117 HsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~-~~~~F~E~EAs~vvkdia~aLdFlH~k  195 (463)
T KOG0607|consen  117 HSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQ-KRKHFNEREASRVVKDIASALDFLHTK  195 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchHHHHHH-HhhhccHHHHHHHHHHHHHHHHHHhhc
Confidence            3467899999999877 5999999884444     4599999976 555544 567899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCC---eEEecccCccccCCC-----------CccccccccCCcccccc-----CccCCCCcc
Q 015733           88 ERALYHDLNAYRIVFDDDVN---PRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRT-----GRVTPESVM  148 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~-----~~~~~~~Dv  148 (401)
                       ||.||||||+|||..+...   +|||||.+......+           .+.+|+..|||||+..-     ..|+.+.|.
T Consensus       196 -gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDl  274 (463)
T KOG0607|consen  196 -GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDL  274 (463)
T ss_pred             -CcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccH
Confidence             9999999999999976654   699999876543211           23457788999998642     358889999


Q ss_pred             hhhHHHHHHHHhCCCCCCchhhH--Hhhhcccc-----ccccccccC--CCCh----HHHHHHHHHHHHhcccCCCCCCC
Q 015733          149 YSFGTLLLDLLSGKHIPPSHALD--LIRDRNIQ-----TLTDSCLEG--QFSS----DEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       149 ~slG~~l~el~tg~~p~~~~~~~--~~~~~~~~-----~~~~~~~~~--~~~~----~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ||||||+|-|+.|.+||.+....  .+..+...     .++..+..+  +||.    .++.+..++|..+|..++.+|.+
T Consensus       275 wSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rls  354 (463)
T KOG0607|consen  275 WSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLS  354 (463)
T ss_pred             HHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhh
Confidence            99999999999999999764211  11222211     112222112  3454    36888999999999999999999


Q ss_pred             HHHHHH
Q 015733          216 PRSLVT  221 (401)
Q Consensus       216 ~~~vl~  221 (401)
                      +.+++.
T Consensus       355 a~~vln  360 (463)
T KOG0607|consen  355 AAQVLN  360 (463)
T ss_pred             hhhccC
Confidence            998876

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.94  E-value=2e-27  Score=213.72  Aligned_cols=207  Identities=14%  Similarity=0.221  Sum_probs=153.1

Q ss_pred             hhhHHHHHHHHHHhhhCC--Ce----EEEeeeecc-----ccEeeecCCccccccc-CCCCCCCHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSS--FI----LLAVIFMFQ-----IPSYEFHCLTFSNNFS-GETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h--~n----iv~~~~~~~-----~~v~Ey~~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ..++.-+.|+.++.++.+  |+    ++.....++     ..|+|.++-++.+.+. ++-.+++...+..++.|++.+++
T Consensus       127 kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~  206 (415)
T KOG0671|consen  127 KYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVA  206 (415)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHH
Confidence            356788889999999954  43    333322233     3389998855444444 45788999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECC--------------------CCCeEEecccCccccCCC-CccccccccCCccccccCc
Q 015733           83 YCTSKERALYHDLNAYRIVFDD--------------------DVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGR  141 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~--------------------~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~  141 (401)
                      |||+. +++|.||||+|||+.+                    +..++|+|||.++..... .+...|..|.|||++.+-.
T Consensus       207 fLh~~-kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLG  285 (415)
T KOG0671|consen  207 FLHDL-KLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLG  285 (415)
T ss_pred             HHHhc-ceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccC
Confidence            99999 9999999999999931                    345799999999986654 3456789999999999999


Q ss_pred             cCCCCcchhhHHHHHHHHhCCCCCCchhh--HH-hhhcccc---------------------------------cccccc
Q 015733          142 VTPESVMYSFGTLLLDLLSGKHIPPSHAL--DL-IRDRNIQ---------------------------------TLTDSC  185 (401)
Q Consensus       142 ~~~~~Dv~slG~~l~el~tg~~p~~~~~~--~~-~~~~~~~---------------------------------~~~~~~  185 (401)
                      ++.++||||+||||.|+.||...|.....  .+ .....+.                                 .+.++.
T Consensus       286 wS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~c  365 (415)
T KOG0671|consen  286 WSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPC  365 (415)
T ss_pred             cCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCC
Confidence            99999999999999999999988865421  00 0000000                                 000000


Q ss_pred             c----cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          186 L----EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       186 ~----~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .    .....+....++.+|+.+||..||.+|+|+.|++.+
T Consensus       366 kpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  366 KPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             ccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcC
Confidence            0    001123356779999999999999999999999864

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.94  E-value=4.4e-27  Score=211.76  Aligned_cols=208  Identities=20%  Similarity=0.253  Sum_probs=163.7

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEee-ee---cccc--EeeecC-Cccccccc-----C--CCCCCCHHHHHHHHHHHHH
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVI-FM---FQIP--SYEFHC-LTFSNNFS-----G--ETQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~-~~---~~~~--v~Ey~~-~~l~~~~~-----~--~~~~l~~~~~~~i~~qi~~   79 (401)
                      .+|-..|+.|-..+-..+|||++.+. .+   ...+  .+.++. |.+...+.     +  ..+.++..+.+.++.|++.
T Consensus       328 ~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~  407 (563)
T KOG1024|consen  328 QIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAM  407 (563)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHH
Confidence            46678899999999999999977665 21   2222  566666 44433332     1  2456788899999999999


Q ss_pred             HHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCccc------cccccCCccccccCccCCCCcchhhHH
Q 015733           80 ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS------TNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        80 ~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      |++|||+. ||||.||..+|++|++-..+||+|=.+++...+....+      ....||+||.+....|+..+|||||||
T Consensus       408 am~hlh~~-~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGV  486 (563)
T KOG1024|consen  408 AMEHLHNH-GVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGV  486 (563)
T ss_pred             HHHHHHhc-CcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHH
Confidence            99999999 99999999999999999999999999998866655433      357899999999999999999999999


Q ss_pred             HHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          154 LLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       154 ~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ++|||+| |+.|+..-     ........+..+.+-.-|.+||.++..+|..||...|++|||++++..-|....
T Consensus       487 llWELmtlg~~PyaeI-----DPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  487 LLWELMTLGKLPYAEI-----DPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             HHHHHHhcCCCCcccc-----CHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            9999998 55554321     112222333344455568899999999999999999999999999999887654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.7e-28  Score=208.14  Aligned_cols=206  Identities=16%  Similarity=0.222  Sum_probs=153.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecccc----------EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQIP----------SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~~~----------v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+.|.+|+.+++.++|-|++......+-+          ++|+|..++-..+ -...+|+-..+.-+..||++||.|||
T Consensus        95 s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQSDLHKII-VSPQ~Ls~DHvKVFlYQILRGLKYLH  173 (449)
T KOG0664|consen   95 SCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQSDLHKII-VSPQALTPDHVKVFVYQILRGLKYLH  173 (449)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHhhhhhee-ccCCCCCcchhhhhHHHHHhhhHHHh
Confidence            457899999999999999988877554422          6677765554444 36788999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccccccCCccccccC-ccCCCCcchhhHHHHHHHH
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~  159 (401)
                      +. ||+||||||.|.|+++|-.+||||||+++.......     ..-|-.|.|||++.+. .|+.+.||||+||++.|++
T Consensus       174 sA-~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELL  252 (449)
T KOG0664|consen  174 TA-NILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELL  252 (449)
T ss_pred             hc-chhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHH
Confidence            99 999999999999999999999999999998654432     3347889999999984 5999999999999999999


Q ss_pred             hCCCCCCchh--------hHHhhh-----------cccccccccccc-CC--------CChHHHHHHHHHHHHhcccCCC
Q 015733          160 SGKHIPPSHA--------LDLIRD-----------RNIQTLTDSCLE-GQ--------FSSDEGTELVRLASRCLQYEPR  211 (401)
Q Consensus       160 tg~~p~~~~~--------~~~~~~-----------~~~~~~~~~~~~-~~--------~~~~~~~~l~~li~~cl~~~p~  211 (401)
                      ..+..|....        .++...           +....+.....+ +.        -+..-..+...+...++..||+
T Consensus       253 gRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~d  332 (449)
T KOG0664|consen  253 QRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPD  332 (449)
T ss_pred             hhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCc
Confidence            8887663311        000000           000001100000 11        1223345677888999999999


Q ss_pred             CCCCHHHHHHHH
Q 015733          212 ERPNPRSLVTAL  223 (401)
Q Consensus       212 ~Rps~~~vl~~l  223 (401)
                      +|.+..+.+..+
T Consensus       333 kris~~~A~~~~  344 (449)
T KOG0664|consen  333 KRISVEEALQHR  344 (449)
T ss_pred             ccccHhhhcccc
Confidence            999999888754

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=9.9e-27  Score=214.29  Aligned_cols=211  Identities=15%  Similarity=0.183  Sum_probs=153.7

Q ss_pred             HHHHHH--HHHHhhhCCCeEEEeeeecc---------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           18 TYFIVS--LVLIASMSSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        18 ~~f~~E--~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..|..|  |.-+-.|.|+||++|+...+         -+|+||.+. +|.+.+.  ...++|....+++..+++||+|||
T Consensus       247 qs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~--~ntisw~~~cria~SmarGLa~LH  324 (534)
T KOG3653|consen  247 QSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLK--ANTISWNSLCRIAESMARGLAHLH  324 (534)
T ss_pred             HHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHH--hccccHHHHHHHHHHHHHHHHHhc
Confidence            455555  55566789999999983322         239999994 5555553  346899999999999999999999


Q ss_pred             cC--------CCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCc-cC-----CC
Q 015733           86 SK--------ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGR-VT-----PE  145 (401)
Q Consensus        86 ~~--------~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~-~~-----~~  145 (401)
                      +.        ++|+|||||++||||..|+++.|+|||+|.....+.      ...||.+|||||++.+.- +.     .+
T Consensus       325 ee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr  404 (534)
T KOG3653|consen  325 EELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKR  404 (534)
T ss_pred             ccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHH
Confidence            73        469999999999999999999999999999866442      246899999999998632 22     26


Q ss_pred             CcchhhHHHHHHHHhCCCCCC-c-------hhhHHhhh----cccc-ccccccccCCCChH-----HHHHHHHHHHHhcc
Q 015733          146 SVMYSFGTLLLDLLSGKHIPP-S-------HALDLIRD----RNIQ-TLTDSCLEGQFSSD-----EGTELVRLASRCLQ  207 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~-~-------~~~~~~~~----~~~~-~~~~~~~~~~~~~~-----~~~~l~~li~~cl~  207 (401)
                      .||||+|.|||||+++..... +       .+...+..    +..+ .++....++.+|..     ...-+++.+..||+
T Consensus       405 ~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWD  484 (534)
T KOG3653|consen  405 IDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWD  484 (534)
T ss_pred             HHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcC
Confidence            899999999999997643221 0       01000000    0111 12333344455543     35668999999999


Q ss_pred             cCCCCCCCHHHHHHHHHccccCC
Q 015733          208 YEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      .||+.|.|+.=|.+.+..+....
T Consensus       485 hDaeARLTA~Cv~eR~~~l~~~~  507 (534)
T KOG3653|consen  485 HDAEARLTAGCVEERMAELMMLW  507 (534)
T ss_pred             CchhhhhhhHHHHHHHHHHhccC
Confidence            99999999999988887776543

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=2.8e-27  Score=196.15  Aligned_cols=155  Identities=14%  Similarity=0.208  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHh-hhCCCeEEEeee-ecc---cc-EeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           18 TYFIVSLVLIA-SMSSFILLAVIF-MFQ---IP-SYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        18 ~~f~~E~~~l~-~~~h~niv~~~~-~~~---~~-v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ++.++|+.+.. ...-|.+|.|++ .++   .. -||.|+.+++.++.   ..++.+++..+=+|+..++.||.|||++.
T Consensus        89 ~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL  168 (282)
T KOG0984|consen   89 KRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL  168 (282)
T ss_pred             HHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh
Confidence            34567777664 446789999993 333   11 68888876655543   36788999999999999999999999998


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC--c-cccccccCCcccccc----CccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--S-YSTNLAFTPPEYLRT----GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--~-~~~~~~y~aPE~~~~----~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      .+||||+||+|||++.+|.+|+||||.+....++-  + -.|--.|||||.+..    ..|+.+|||||||+++.||.++
T Consensus       169 ~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~l  248 (282)
T KOG0984|consen  169 SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAIL  248 (282)
T ss_pred             hhhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhc
Confidence            89999999999999999999999999988766542  2 356678999999875    3689999999999999999999


Q ss_pred             CCCCCchhhHH
Q 015733          162 KHIPPSHALDL  172 (401)
Q Consensus       162 ~~p~~~~~~~~  172 (401)
                      +.|+..|..+.
T Consensus       249 r~PY~~w~tpF  259 (282)
T KOG0984|consen  249 RFPYESWGTPF  259 (282)
T ss_pred             cccccccCCHH
Confidence            99998876554

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.94  E-value=4.6e-27  Score=229.54  Aligned_cols=195  Identities=20%  Similarity=0.213  Sum_probs=142.7

Q ss_pred             HHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCC---CHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           21 IVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPM---KWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        21 ~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l---~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+||..++.- .|||||+++...+     ....|.|.-+|.+++......+   .--..+.+..|+++||+|||+. +||
T Consensus       550 ~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl-~iV  628 (903)
T KOG1027|consen  550 QREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL-KIV  628 (903)
T ss_pred             HHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc-ccc
Confidence            4688888655 7999999995555     3367888877777765421111   1133567889999999999998 999


Q ss_pred             eccCCCCCEEECC---C--CCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           92 YHDLNAYRIVFDD---D--VNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        92 H~dlk~~Nill~~---~--~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      ||||||.||||+.   +  ..++|+|||+++....+.       ...||-+|+|||++.....+.++||||+|||+|+.+
T Consensus       629 HRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvl  708 (903)
T KOG1027|consen  629 HRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVL  708 (903)
T ss_pred             cccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEe
Confidence            9999999999976   3  467999999999865443       345789999999999988888999999999999999


Q ss_pred             hCC-CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          160 SGK-HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       160 tg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      +|+ .||.+......  .++..... ...-....++  +..+||.+|++++|..||++.+|+.
T Consensus       709 tgG~HpFGd~~~R~~--NIl~~~~~-L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  709 TGGSHPFGDSLERQA--NILTGNYT-LVHLEPLPDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             cCCccCCCchHHhhh--hhhcCccc-eeeeccCchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            985 56544321100  11111000 0000111222  8899999999999999999999986

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.9e-26  Score=218.70  Aligned_cols=194  Identities=16%  Similarity=0.124  Sum_probs=147.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeeccc-----cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQI-----PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~~-----~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      -|--..-.|-.||..-+.+=+|++++.|+.     .||+|++||..-.+.-+-+.+++..+..++.++.+|++++|.. |
T Consensus       671 nQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkm-G  749 (1034)
T KOG0608|consen  671 NQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKM-G  749 (1034)
T ss_pred             hhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc-c
Confidence            344566678888988888889999988883     3999999764444443567799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC---------C-------------------------------------C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD---------G-------------------------------------R  123 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~---------~-------------------------------------~  123 (401)
                      +|||||||+|||||.+|++||.||||++-+.-         +                                     -
T Consensus       750 FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ah  829 (1034)
T KOG0608|consen  750 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAH  829 (1034)
T ss_pred             ceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999999874320         0                                     0


Q ss_pred             ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHh--hhccccccccccccCCCChHHHHHHHHH
Q 015733          124 SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI--RDRNIQTLTDSCLEGQFSSDEGTELVRL  201 (401)
Q Consensus       124 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l  201 (401)
                      +..||+.|+|||++....++..+|.||.|||||||+.|+.||........  +-.++...    +...+...++.++.++
T Consensus       830 slvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~----l~~~~~~~ls~e~~~l  905 (1034)
T KOG0608|consen  830 SLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNF----LHIPYQGNLSKEALDL  905 (1034)
T ss_pred             hhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhc----cccccccccCHHHHHH
Confidence            12368999999999999999999999999999999999999866432111  11111111    2222334567777787


Q ss_pred             HHHhcccCCCCCC
Q 015733          202 ASRCLQYEPRERP  214 (401)
Q Consensus       202 i~~cl~~~p~~Rp  214 (401)
                      |.++.. +++.|.
T Consensus       906 i~kLc~-sad~RL  917 (1034)
T KOG0608|consen  906 IQKLCC-SADSRL  917 (1034)
T ss_pred             HHHHhc-Chhhhh
Confidence            775442 466664

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-26  Score=226.31  Aligned_cols=200  Identities=12%  Similarity=0.129  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc----------ccEeeecCCcccccccC--CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSG--ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      -++.-.|..+++.. .|||++.+++.+-          =+|||||.||.-..+..  .+..+.|+.+..|++.++.|+.+
T Consensus        59 deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~H  138 (953)
T KOG0587|consen   59 EEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAH  138 (953)
T ss_pred             cHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHH
Confidence            35667788888877 5799998885443          12999999764333322  26779999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-----CccCCCCcchhhHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-----GRVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~  154 (401)
                      ||.. .++|||||-.|||++.++.|||+|||++.....+    .+..|||.|||||++..     ..|+.++|+||||++
T Consensus       139 LH~n-kviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGIT  217 (953)
T KOG0587|consen  139 LHNN-KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGIT  217 (953)
T ss_pred             Hhhc-ceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccce
Confidence            9999 9999999999999999999999999998875543    56789999999999875     347789999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccc-cccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ..||..|.+|+.+-    .....+-. ..+|......|...+.++.++|..||.+|-.+||++.++++
T Consensus       218 aIEladG~PPl~Dm----HPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  218 AIEMAEGAPPLCDM----HPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             eehhcCCCCCccCc----chhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            99999999885431    11111111 11222222336788999999999999999999999998876

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.1e-26  Score=208.82  Aligned_cols=210  Identities=14%  Similarity=0.135  Sum_probs=153.9

Q ss_pred             HHHHHHHHH--HhhhCCCeEEEeee--ecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           18 TYFIVSLVL--IASMSSFILLAVIF--MFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        18 ~~f~~E~~~--l~~~~h~niv~~~~--~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..+.+|-++  ...++|+||++|+.  ...       -+|.+|.+.|.+..+..+ ..++.+..++++..+++||+|||-
T Consensus       248 ~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r-~tv~~~~ml~LalS~AsGLaHLH~  326 (513)
T KOG2052|consen  248 RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR-NTVTTEGMLKLALSIASGLAHLHM  326 (513)
T ss_pred             hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh-ccCCHHHHHHHHHHHhhhHHHHHH
Confidence            455665544  46679999999992  222       239999995544444433 679999999999999999999995


Q ss_pred             -------CCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC------ccCCC
Q 015733           87 -------KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG------RVTPE  145 (401)
Q Consensus        87 -------~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~------~~~~~  145 (401)
                             ++.|.|||||+.|||+.+++.+.|+|+|+|......        ....||.+|||||++...      ..-..
T Consensus       327 eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~  406 (513)
T KOG2052|consen  327 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKR  406 (513)
T ss_pred             HHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhH
Confidence                   345999999999999999999999999999875543        345799999999999753      12247


Q ss_pred             CcchhhHHHHHHHHhC----------CCCCCchhhHHhhhccccc-cccccccCCCC-----hHHHHHHHHHHHHhcccC
Q 015733          146 SVMYSFGTLLLDLLSG----------KHIPPSHALDLIRDRNIQT-LTDSCLEGQFS-----SDEGTELVRLASRCLQYE  209 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg----------~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~li~~cl~~~  209 (401)
                      +||||||.|+||+.-.          +.||.+............+ +....+++.+|     .+....+.++|+.||..+
T Consensus       407 ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~N  486 (513)
T KOG2052|consen  407 ADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYAN  486 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCC
Confidence            8999999999999632          2455443221111111111 22233344444     346678899999999999


Q ss_pred             CCCCCCHHHHHHHHHcccc
Q 015733          210 PRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       210 p~~Rps~~~vl~~l~~~~~  228 (401)
                      |..|-|+--|...|.++..
T Consensus       487 p~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  487 PAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             chhhhHHHHHHHHHHHHhc
Confidence            9999999989888887764

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=2.9e-26  Score=229.42  Aligned_cols=154  Identities=14%  Similarity=0.220  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECC-CCCeEEecccCccccCCC-----CccccccccCCccccccC-
Q 015733           68 AMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG-  140 (401)
Q Consensus        68 ~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~-  140 (401)
                      ..+..++.||+.||.|||++ +|+||||||+|||++. ++.+||+|||+++.....     ....+++.|+|||.+... 
T Consensus       255 ~~i~~i~~qll~aL~yLH~~-gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~  333 (566)
T PLN03225        255 KIIQTIMRQILFALDGLHST-GIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMST  333 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccC
Confidence            44668999999999999999 9999999999999985 578999999999864332     345678999999976432 


Q ss_pred             ---------------------ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHh---hhcc-----ccccccccccCC--
Q 015733          141 ---------------------RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI---RDRN-----IQTLTDSCLEGQ--  189 (401)
Q Consensus       141 ---------------------~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~---~~~~-----~~~~~~~~~~~~--  189 (401)
                                           .++.++|||||||++|||+++..++........   ....     +.....+....+  
T Consensus       334 ~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  413 (566)
T PLN03225        334 QTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLR  413 (566)
T ss_pred             CCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhh
Confidence                                 234467999999999999998766443211110   0000     000111110000  


Q ss_pred             ----CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          190 ----FSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       190 ----~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                          ..........+||.+||+.||.+|||+.+++++
T Consensus       414 ~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        414 RGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             hhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCC
Confidence                001122345689999999999999999999875

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.92  E-value=9e-25  Score=213.68  Aligned_cols=207  Identities=13%  Similarity=0.114  Sum_probs=141.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeE--------EEeeee----------ccccEeeecCCc-ccccccCC---------------
Q 015733           16 QSTYFIVSLVLIASMSSFIL--------LAVIFM----------FQIPSYEFHCLT-FSNNFSGE---------------   61 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~ni--------v~~~~~----------~~~~v~Ey~~~~-l~~~~~~~---------------   61 (401)
                      ..+.++.|+.++.+++|.++        ++++..          ...+||||++++ +.+.+...               
T Consensus       215 ~~e~~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g  294 (507)
T PLN03224        215 SAETGMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAG  294 (507)
T ss_pred             ccchhHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcC
Confidence            45667778889999988764        222211          124599999964 44433221               


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc-----cccc
Q 015733           62 --------TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-----YSTN  128 (401)
Q Consensus        62 --------~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-----~~~~  128 (401)
                              ...+++..+..++.|++.||.|||+. +|+||||||+|||++.++.+||+|||+++.......     ..++
T Consensus       295 ~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~-~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~t  373 (507)
T PLN03224        295 KKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRI-GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLD  373 (507)
T ss_pred             CchhhhcccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCC
Confidence                    12357788999999999999999999 999999999999999999999999999876433211     2347


Q ss_pred             cccCCccccccCcc----------------------CCCCcchhhHHHHHHHHhCCC-CCCch--hhHHhh--hcccc--
Q 015733          129 LAFTPPEYLRTGRV----------------------TPESVMYSFGTLLLDLLSGKH-IPPSH--ALDLIR--DRNIQ--  179 (401)
Q Consensus       129 ~~y~aPE~~~~~~~----------------------~~~~Dv~slG~~l~el~tg~~-p~~~~--~~~~~~--~~~~~--  179 (401)
                      +.|++||.+.....                      ..+.||||+||++++|++|.. |+...  +.....  .....  
T Consensus       374 p~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~  453 (507)
T PLN03224        374 PRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRW  453 (507)
T ss_pred             cceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHH
Confidence            89999998764321                      234799999999999999986 44321  000000  00000  


Q ss_pred             -ccccccccCCCChHHHHHHHHHHHHhcccCC---CCCCCHHHHHHHH
Q 015733          180 -TLTDSCLEGQFSSDEGTELVRLASRCLQYEP---RERPNPRSLVTAL  223 (401)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p---~~Rps~~~vl~~l  223 (401)
                       ...............+....+|+.+||..+|   .+|+|+.+++.+-
T Consensus       454 r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp  501 (507)
T PLN03224        454 RMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHR  501 (507)
T ss_pred             HhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCC
Confidence             0001111112234567889999999999866   6899999998753

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=8.3e-25  Score=184.18  Aligned_cols=202  Identities=15%  Similarity=0.202  Sum_probs=152.2

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeeccc-------cEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQI-------PSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~~-------~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .....+|+.+|..++ ||||++++.....       +|+||++++....+-   ..|+...+..++.+++.||.|+|++ 
T Consensus        76 kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly---~tl~d~dIryY~~elLkALdyCHS~-  151 (338)
T KOG0668|consen   76 KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLY---PTLTDYDIRYYIYELLKALDYCHSM-  151 (338)
T ss_pred             HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHh---hhhchhhHHHHHHHHHHHHhHHHhc-
Confidence            467889999999998 9999999955553       399999976444333   3477778899999999999999999 


Q ss_pred             CceeccCCCCCEEECCC-CCeEEecccCccccCCCCcc---ccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCC
Q 015733           89 RALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDGRSY---STNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~~~~---~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||.|||+||.|+++|.. -.++|+|+|+|-....+...   ..+..|-.||.+... .|+-.-|+|||||++..|+..+.
T Consensus       152 GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrke  231 (338)
T KOG0668|consen  152 GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKE  231 (338)
T ss_pred             CcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccC
Confidence            99999999999999965 46899999999987776543   456778889999874 47888999999999999999999


Q ss_pred             CCCchhh---HHhh------h---------------cccccccccccc--------CCCChHHHHHHHHHHHHhcccCCC
Q 015733          164 IPPSHAL---DLIR------D---------------RNIQTLTDSCLE--------GQFSSDEGTELVRLASRCLQYEPR  211 (401)
Q Consensus       164 p~~~~~~---~~~~------~---------------~~~~~~~~~~~~--------~~~~~~~~~~l~~li~~cl~~~p~  211 (401)
                      ||.....   .+..      .               .....++....+        ..-..-.+++..+|+...|..|..
T Consensus       232 pFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHq  311 (338)
T KOG0668|consen  232 PFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQ  311 (338)
T ss_pred             cccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccc
Confidence            9854210   0000      0               000011111111        111112458899999999999999


Q ss_pred             CCCCHHHHHHH
Q 015733          212 ERPNPRSLVTA  222 (401)
Q Consensus       212 ~Rps~~~vl~~  222 (401)
                      +|+|+.|.+.+
T Consensus       312 eRlTakEam~H  322 (338)
T KOG0668|consen  312 ERLTAKEAMAH  322 (338)
T ss_pred             cccchHHHhcC
Confidence            99999999864

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.91  E-value=9.4e-24  Score=184.89  Aligned_cols=168  Identities=22%  Similarity=0.347  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+..+..++|++++.+.....     ..+|||++| ++...+......+++..+..++.+++.++.+||+. |+
T Consensus        35 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~~  113 (215)
T cd00180          35 LEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSN-GI  113 (215)
T ss_pred             HHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            367999999999999999999884433     449999995 45554443335789999999999999999999999 99


Q ss_pred             eeccCCCCCEEECC-CCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +|+||+|.||+++. ++.++|+|||.+......    ....+...|++||.+... ..+.++|+|++|++++++      
T Consensus       114 ~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l------  187 (215)
T cd00180         114 IHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL------  187 (215)
T ss_pred             eccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH------
Confidence            99999999999999 899999999998876543    234567899999999877 788999999999999998      


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                                                     ..+.+++..|++.+|++||++.+++..
T Consensus       188 -------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 -------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             -------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                                           568899999999999999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.1e-25  Score=189.92  Aligned_cols=205  Identities=19%  Similarity=0.212  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecccc-----EeeecC-CcccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQIP-----SYEFHC-LTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~~~-----v~Ey~~-~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+++|..|...++-++||||+.+++..+.+     +..||+ |++.+.+++. +-.++..++++++.++++|+.|||+..
T Consensus       230 isrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsle  309 (448)
T KOG0195|consen  230 ISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE  309 (448)
T ss_pred             hcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc
Confidence            478999999999999999998888544432     889999 6777777764 345688899999999999999999986


Q ss_pred             Cceec-cCCCCCEEECCCCCeEEe--cccCccccCCCCccccccccCCccccccCcc---CCCCcchhhHHHHHHHHhCC
Q 015733           89 RALYH-DLNAYRIVFDDDVNPRLS--CFGLMKNSRDGRSYSTNLAFTPPEYLRTGRV---TPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        89 ~ivH~-dlk~~Nill~~~~~~kl~--Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~---~~~~Dv~slG~~l~el~tg~  162 (401)
                      +++-| -|++..+++|++.+.+|+  |-.+   .........+|.||+||.++..+-   -..+|+|||.+++||+.|..
T Consensus       310 p~ipr~~lns~hvmidedltarismad~kf---sfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~tre  386 (448)
T KOG0195|consen  310 PMIPRFYLNSKHVMIDEDLTARISMADTKF---SFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTRE  386 (448)
T ss_pred             hhhhhhhcccceEEecchhhhheeccccee---eeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccc
Confidence            77777 799999999999988775  3221   112222334789999999987543   34789999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .||.+..    ..+.-.++.-+.++..+|+..+..+..|+.-|++.||.+||.+..|+..|+++.
T Consensus       387 vpfadls----pmecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  387 VPFADLS----PMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             cccccCC----chhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            9987653    223334555567788899999999999999999999999999999999998764

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.90  E-value=1.4e-24  Score=202.03  Aligned_cols=213  Identities=15%  Similarity=0.180  Sum_probs=154.4

Q ss_pred             hhhhccchhhhhhHHHHHHHHHHhhhCCC------eEEEeeeecc-----ccEeeecCCcccccccC--CCCCCCHHHHH
Q 015733            5 LWQNTCPMIRLQSTYFIVSLVLIASMSSF------ILLAVIFMFQ-----IPSYEFHCLTFSNNFSG--ETQPMKWAMRL   71 (401)
Q Consensus         5 ~~~~~~~~~~~~~~~f~~E~~~l~~~~h~------niv~~~~~~~-----~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~   71 (401)
                      ++.||--|..    .=+.|+.+|++|+--      +++.++..|.     ++|||-+.-.|..++..  .+..|....+.
T Consensus       464 IIRnNE~M~K----tGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVR  539 (752)
T KOG0670|consen  464 IIRNNEVMHK----TGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVR  539 (752)
T ss_pred             EeecchHHhh----hhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhhchHHHHHHHhCcccceeehHHH
Confidence            3456655544    456788888888632      3455442222     44888877666666653  45668889999


Q ss_pred             HHHHHHHHHHHHHhcCCCceeccCCCCCEEECCC-CCeEEecccCccccCCCCc--cccccccCCccccccCccCCCCcc
Q 015733           72 RVALHIAEALEYCTSKERALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDGRS--YSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        72 ~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~~~--~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                      .++.|+.-||..|-.. ||+|.||||.|||++.. ..+||||||.|........  +.-+-.|.|||++.+-+|+...|+
T Consensus       540 sYaqQLflALklLK~c-~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~  618 (752)
T KOG0670|consen  540 SYAQQLFLALKLLKKC-GVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDT  618 (752)
T ss_pred             HHHHHHHHHHHHHHhc-CeeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccc
Confidence            9999999999999999 99999999999999865 5679999999887665532  345678999999999999999999


Q ss_pred             hhhHHHHHHHHhCCCCCCchhhHH----------------hhhc------------------------ccccc---ccc-
Q 015733          149 YSFGTLLLDLLSGKHIPPSHALDL----------------IRDR------------------------NIQTL---TDS-  184 (401)
Q Consensus       149 ~slG~~l~el~tg~~p~~~~~~~~----------------~~~~------------------------~~~~~---~~~-  184 (401)
                      ||+||+||||.||+..|++.+...                +..+                        ....+   +.| 
T Consensus       619 WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPt  698 (752)
T KOG0670|consen  619 WSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPT  698 (752)
T ss_pred             eeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcc
Confidence            999999999999999887742110                0000                        00000   011 


Q ss_pred             ------cc-cCCCCh---HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          185 ------CL-EGQFSS---DEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       185 ------~~-~~~~~~---~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                            .. ...+|.   .....+.+|+..||..||.+|.|..++|.+
T Consensus       699 kdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  699 KDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKH  746 (752)
T ss_pred             hhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcC
Confidence                  00 011232   345678999999999999999999998763

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.90  E-value=2e-24  Score=206.22  Aligned_cols=195  Identities=14%  Similarity=0.160  Sum_probs=153.1

Q ss_pred             HHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Q 015733           22 VSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLN   96 (401)
Q Consensus        22 ~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk   96 (401)
                      .|+.+++..+||||+.+++..-     -..||||+|+.+..+..-.++|++.++..+.+..+.|++|||++ |-+|||||
T Consensus        61 qei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~-gk~hRdiK  139 (829)
T KOG0576|consen   61 QEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQ-GKIHRDIK  139 (829)
T ss_pred             cceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcC-Cccccccc
Confidence            4788889999999999883222     12899999776665555778999999999999999999999999 99999999


Q ss_pred             CCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           97 AYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        97 ~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      -.|||+++.|.+|++|||.+...+    .+.++.||+.|||||+..   .+.|...+|||++|++..|+-.-++|-... 
T Consensus       140 Ganilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl-  218 (829)
T KOG0576|consen  140 GANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL-  218 (829)
T ss_pred             ccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc-
Confidence            999999999999999999987654    346789999999999864   467999999999999999998877663321 


Q ss_pred             hHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                         .....+.-+......+   .-+...++-+.+|++.|+.++|.+|||++.++.
T Consensus       219 ---hpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  219 ---HPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             ---chHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence               1111111111111111   123457788999999999999999999987765

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-23  Score=194.06  Aligned_cols=87  Identities=8%  Similarity=0.096  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHhhhC-----CCe---EEEeeeecc---------ccEeeecCCcccccccC-CCCCCCHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS-----SFI---LLAVIFMFQ---------IPSYEFHCLTFSNNFSG-ETQPMKWAMRLRVALHI   77 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-----h~n---iv~~~~~~~---------~~v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~~qi   77 (401)
                      ..+.-+-||.+|++++     |++   ||+++..|.         ++|+|++...|+.++.. .-+.++...+.+|++||
T Consensus       117 YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qv  196 (590)
T KOG1290|consen  117 YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQV  196 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence            3455677999998884     443   888886655         34999999888887765 45779999999999999


Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEE
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVF  102 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill  102 (401)
                      +.||.|||.+|||||.||||+|||+
T Consensus       197 L~GLdYLH~ecgIIHTDlKPENvLl  221 (590)
T KOG1290|consen  197 LTGLDYLHRECGIIHTDLKPENVLL  221 (590)
T ss_pred             HHHHHHHHHhcCccccCCCcceeee
Confidence            9999999999999999999999999

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-23  Score=180.15  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEee-eecc-----ccEeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMS-SFILLAVI-FMFQ-----IPSYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~-~~~~-----~~v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      -.+|.+|...---++ |.||+..+ ..++     +.++||++ |+|...+..  ..+.+.-..+++.|+++||.|+|++ 
T Consensus        64 ~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~--~GigE~~~K~v~~ql~SAi~fMHsk-  140 (378)
T KOG1345|consen   64 QADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEA--AGIGEANTKKVFAQLLSAIEFMHSK-  140 (378)
T ss_pred             HHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCc--ccccHHHHHHHHHHHHHHHHHhhcc-
Confidence            368999987777675 56888877 5555     34999999 666666643  5588888999999999999999999 


Q ss_pred             CceeccCCCCCEEEC--CCCCeEEecccCccccCCCCccc-cccccCCcccccc-----CccCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFD--DDVNPRLSCFGLMKNSRDGRSYS-TNLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~--~~~~~kl~Dfg~~~~~~~~~~~~-~~~~y~aPE~~~~-----~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++||||||.+||||-  +...+||||||+.+..+...... .+..|.+||....     ....+.+|||.||++++..+|
T Consensus       141 nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~clt  220 (378)
T KOG1345|consen  141 NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLT  220 (378)
T ss_pred             chhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeec
Confidence            999999999999994  34579999999988766554332 3567899987654     235788999999999999999


Q ss_pred             CCCCCCchhhHH---hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          161 GKHIPPSHALDL---IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       161 g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      |..|+.-.....   +.-.....-..+.++. .-...++.+..+.++-|.++|++|-...++
T Consensus       221 G~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~-~F~~fs~~a~r~Fkk~lt~~~~drcki~~~  281 (378)
T KOG1345|consen  221 GKFPWQKASIMDKPYWEWEQWLKRKNPALPK-KFNPFSEKALRLFKKSLTPRFKDRCKIWTA  281 (378)
T ss_pred             CCCcchhhhccCchHHHHHHHhcccCccCch-hhcccCHHHHHHHHHhcCCcccccchhHHH
Confidence            998864211000   0000011100111111 112356678889999999999999443333

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-23  Score=197.87  Aligned_cols=144  Identities=13%  Similarity=0.186  Sum_probs=124.6

Q ss_pred             HHHHHHhhhC---CCeEEEeeeecccc-----EeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           22 VSLVLIASMS---SFILLAVIFMFQIP-----SYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        22 ~E~~~l~~~~---h~niv~~~~~~~~~-----v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .||.+|..++   |+||++++..++..     +||-.. |-.+..+++....+++.++.-|+.||+.|+++||+. ||||
T Consensus       615 ~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~-~ivh  693 (772)
T KOG1152|consen  615 SEIQILATLNKHSHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQ-GIVH  693 (772)
T ss_pred             hhHHHHHHhhhcCccchhhhhheeecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccccc-Ccee
Confidence            4899999998   99999999555533     555554 435555666778899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||-+|+.++.+|.+||+|||.+....++  ..+.||..|.|||++.+.+| +..-|||++|++||.++....|++
T Consensus       694 rdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  694 RDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999999999999999999999999887665  57899999999999999776 567799999999999999888864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.86  E-value=8.8e-22  Score=174.87  Aligned_cols=151  Identities=19%  Similarity=0.200  Sum_probs=127.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +...+.+|+..+.+++|+|++.+.....     ..++||+++ ++...+......+++..+..++.+++.++.+||+. +
T Consensus        40 ~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~  118 (225)
T smart00221       40 QREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSL-G  118 (225)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4578999999999999999888773322     349999997 55555443332289999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCcccc-ccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYL-RTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ++|+||+|.||+++.++.++|+|||.+......     ....++..|++||.+ ....++.++|||+||+++++|++|+.
T Consensus       119 i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~  198 (225)
T smart00221      119 IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPE  198 (225)
T ss_pred             eecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999998876554     345677889999998 55678889999999999999999999


Q ss_pred             CCCc
Q 015733          164 IPPS  167 (401)
Q Consensus       164 p~~~  167 (401)
                      ||..
T Consensus       199 pf~~  202 (225)
T smart00221      199 PFSG  202 (225)
T ss_pred             Cccc
Confidence            9855

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=4.3e-21  Score=168.57  Aligned_cols=106  Identities=24%  Similarity=0.338  Sum_probs=103.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....++.++.+|+.+++.++|++|+..|++||+++|. ++.+|.|||.+|.++|+|+.|+++|+.||.+||.+.++|.++
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4678999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          371 AAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |.+|+.+|+|++|++.|++||++||.+
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCc
Confidence            999999999999999999999999964

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.3e-22  Score=199.78  Aligned_cols=201  Identities=13%  Similarity=0.071  Sum_probs=150.6

Q ss_pred             HHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceecc
Q 015733           20 FIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHD   94 (401)
Q Consensus        20 f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~d   94 (401)
                      +..|+.+-+.++|||++..+...+     ..+||||++ .+..+......+....+-.++.|++.|+.|+|+. |+.|||
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~-Giahrd  445 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSM-GLAHRD  445 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhc-Cceecc
Confidence            445788889999999876663222     126999999 5555554556788889999999999999999999 999999


Q ss_pred             CCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccCccCC-CCcchhhHHHHHHHHhCCCCC
Q 015733           95 LNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTP-ESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        95 lk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~-~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +|++|++++.+|.+||+|||.+......        ....|+-+|+|||.+.+..|.+ ..||||.|+++..|++|+.|+
T Consensus       446 lK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~W  525 (601)
T KOG0590|consen  446 LKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPW  525 (601)
T ss_pred             CccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcc
Confidence            9999999999999999999998764322        2356889999999999988877 469999999999999999875


Q ss_pred             CchhhHHh---hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLI---RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .-......   ............-...+...++...+.+|.++|+.+|.+|.|+.+|++.
T Consensus       526 k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  526 KVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             ccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence            32111000   0000000000000111234567888999999999999999999999873

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.84  E-value=2.7e-21  Score=176.59  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=145.6

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeeccc-----cEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQI-----PSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~~-----~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.....|+.+|..+- +-|+++++.++..     .|+||++.. ...++.    .++...+..+++.++.||.++|.+ |
T Consensus        78 p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~-G  152 (418)
T KOG1167|consen   78 PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKN-G  152 (418)
T ss_pred             chHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHHHHHhhhhhcc-C
Confidence            456889999999986 5688888866663     399999854 444332    367889999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC-CCeEEecccCcccc-----------------CC--C---------------------------
Q 015733           90 ALYHDLNAYRIVFDDD-VNPRLSCFGLMKNS-----------------RD--G---------------------------  122 (401)
Q Consensus        90 ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~-----------------~~--~---------------------------  122 (401)
                      ||||||||+|+|.+.. +.-.|+|||++...                 ..  +                           
T Consensus       153 IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~  232 (418)
T KOG1167|consen  153 IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPS  232 (418)
T ss_pred             ccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccc
Confidence            9999999999999854 56789999998710                 00  0                           


Q ss_pred             --CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCchhh--------------H------H-hhh---
Q 015733          123 --RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPSHAL--------------D------L-IRD---  175 (401)
Q Consensus       123 --~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~--------------~------~-~~~---  175 (401)
                        ....||++|.|||++.. +..+++.||||.|||++-+++++.||.....              .      . ...   
T Consensus       233 ~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l  312 (418)
T KOG1167|consen  233 ERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILL  312 (418)
T ss_pred             eecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceee
Confidence              01236899999999886 5689999999999999999999999843100              0      0 000   


Q ss_pred             ---cc----------cccc-cccccc--------CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          176 ---RN----------IQTL-TDSCLE--------GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       176 ---~~----------~~~~-~~~~~~--------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                         .+          ...+ ......        .......+..+.+|+.+|++.||.+|.|+++.+.+
T Consensus       313 ~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  313 WQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             eccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence               00          0000 000000        01112235578999999999999999999998763

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.79  E-value=2.1e-19  Score=172.10  Aligned_cols=203  Identities=21%  Similarity=0.272  Sum_probs=150.1

Q ss_pred             HhhhCCCeEEEeee-ecc----ccEeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCE
Q 015733           27 IASMSSFILLAVIF-MFQ----IPSYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRI  100 (401)
Q Consensus        27 l~~~~h~niv~~~~-~~~----~~v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Ni  100 (401)
                      ++.+.|.|+..+.+ +..    ..|.+||. |++.+.+......++|.....++++|+.||.|+|.-+.-+|+.+++.|+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            35678888776662 222    22889998 7788877777888999999999999999999999983349999999999


Q ss_pred             EECCCCCeEEecccCccccCCC------CccccccccCCccccccC---c----cCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733          101 VFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTG---R----VTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus       101 ll~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~---~----~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ++|.+..+||+|||+.......      .......-|.|||.+...   .    .+.+.||||||++++|+++...||..
T Consensus        81 lvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~  160 (484)
T KOG1023|consen   81 LVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDL  160 (484)
T ss_pred             eeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccc
Confidence            9999999999999997776431      111234679999998863   1    46789999999999999999999865


Q ss_pred             hhhHHhhhcccccccc---ccccCCCC-h-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          168 HALDLIRDRNIQTLTD---SCLEGQFS-S-DEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .............+.+   +.+++.+. . ...+++..++..||..+|.+||++..|-..+..+.+.
T Consensus       161 ~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  161 RNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             ccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence            4322111111111111   11222222 1 3455799999999999999999999998888776553

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.77  E-value=4e-18  Score=159.44  Aligned_cols=206  Identities=21%  Similarity=0.234  Sum_probs=154.0

Q ss_pred             hhHHHHHHHHHHhhhCCC-eEEEeeeecc-----ccEeeecCCcccccccCCCC---CCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSF-ILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQ---PMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~-niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~---~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ....|.+|+.++..+.|+ +++.+...+.     ..+++|+.++.+..+.....   .++......+..|++.++.|+|+
T Consensus        40 ~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~  119 (384)
T COG0515          40 EVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS  119 (384)
T ss_pred             HHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            357899999999999998 6888874333     34899999765554443332   79999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCC-CeEEecccCccccCCC----------CccccccccCCcccccc---CccCCCCcchhhH
Q 015733           87 KERALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG----------RSYSTNLAFTPPEYLRT---GRVTPESVMYSFG  152 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG  152 (401)
                      . +++|||+||+||+++..+ .++++|||.++.....          ....++..|++||.+.+   ...+...|+||+|
T Consensus       120 ~-~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g  198 (384)
T COG0515         120 K-GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLG  198 (384)
T ss_pred             C-CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHH
Confidence            9 999999999999999988 6999999998754332          34568899999999987   5788999999999


Q ss_pred             HHHHHHHhCCCCCCchhh---HHhhhccccccccccccCCCCh----HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHAL---DLIRDRNIQTLTDSCLEGQFSS----DEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ++++++++|..|+.....   .............+........    .....+.+++..|+..+|..|.+..+....
T Consensus       199 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         199 ITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             HHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            999999999988654321   0000011111110000111111    123578899999999999999998877654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=2.5e-18  Score=156.13  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEE--CCCCC--eEEecccCccccCCC----------Ccccccc
Q 015733           64 PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVF--DDDVN--PRLSCFGLMKNSRDG----------RSYSTNL  129 (401)
Q Consensus        64 ~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill--~~~~~--~kl~Dfg~~~~~~~~----------~~~~~~~  129 (401)
                      ..+.....-++.|+++|+.|||.+ ||.|||+|++|||+  |+|+.  +.|+|||.+-.....          ....|.-
T Consensus       337 ~~s~r~~~~~laQlLEav~hL~~h-gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa  415 (598)
T KOG4158|consen  337 HRSYRTGRVILAQLLEAVTHLHKH-GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNA  415 (598)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHc-cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcc
Confidence            356667778899999999999999 99999999999998  45544  588999976543321          2335677


Q ss_pred             ccCCccccccC--c----cCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHH
Q 015733          130 AFTPPEYLRTG--R----VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLAS  203 (401)
Q Consensus       130 ~y~aPE~~~~~--~----~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  203 (401)
                      .-||||+....  +    --.++|.|+.|.+.||+++...||+....-.......++    ..-+..|+.+++.+++++.
T Consensus       416 ~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe----~qLPalp~~vpp~~rqlV~  491 (598)
T KOG4158|consen  416 KLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQE----SQLPALPSRVPPVARQLVF  491 (598)
T ss_pred             eecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhh----hhCCCCcccCChHHHHHHH
Confidence            88999998752  2    235899999999999999999999875433333333222    2223567888999999999


Q ss_pred             HhcccCCCCCCCHHHHHH
Q 015733          204 RCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       204 ~cl~~~p~~Rps~~~vl~  221 (401)
                      ..|+.||++|+|..-...
T Consensus       492 ~lL~r~pskRvsp~iAAN  509 (598)
T KOG4158|consen  492 DLLKRDPSKRVSPNIAAN  509 (598)
T ss_pred             HHhcCCccccCCccHHHh
Confidence            999999999998554333

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.74  E-value=3.3e-18  Score=164.13  Aligned_cols=185  Identities=16%  Similarity=0.156  Sum_probs=150.8

Q ss_pred             HHHHHHHHHhhhC-CCeEEEeeeecccc-----EeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           19 YFIVSLVLIASMS-SFILLAVIFMFQIP-----SYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        19 ~f~~E~~~l~~~~-h~niv~~~~~~~~~-----v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ....|-.++...+ ||.+|.....++..     +++|..|+.+.........+.+.....+...++-+++++|+. +++|
T Consensus        42 ~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l-~iiy  120 (612)
T KOG0603|consen   42 HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKL-GIAY  120 (612)
T ss_pred             ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccchhhhccccCCchHHHHHHHHHHHHHHHHhhcchh-HHHH
Confidence            3445666666666 89999988776633     778888876666555666778888888999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL  172 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~  172 (401)
                      ||+|++||+++.+|++++.|||+++..-..+..|||..|||||++.  .....+|.||||++++||+||..||....   
T Consensus       121 rd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~~~---  195 (612)
T KOG0603|consen  121 RDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGGDT---  195 (612)
T ss_pred             hcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCchHH---
Confidence            9999999999999999999999999877666669999999999998  56788999999999999999999987621   


Q ss_pred             hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                           ...+..  .....|...+..+.+++..++..+|..|--.
T Consensus       196 -----~~~Il~--~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  196 -----MKRILK--AELEMPRELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             -----HHHHhh--hccCCchhhhHHHHHHHHHHHhhCHHHHhcc
Confidence                 111111  1234678889999999999999999999643

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=1.6e-17  Score=156.20  Aligned_cols=117  Identities=9%  Similarity=-0.076  Sum_probs=91.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEE-ee-eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           16 QSTYFIVSLVLIASMSSFILLA-VI-FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~-~~-~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      ..+.|.+|+.++.+++|+|++. ++ .....+||||++|+.+.....    ..   ...++.|++.||.|||+. ||+||
T Consensus        64 ~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~LVmE~~~G~~L~~~~~----~~---~~~~~~~i~~aL~~lH~~-gIiHr  135 (365)
T PRK09188         64 ARHLAAREIRALKTVRGIGVVPQLLATGKDGLVRGWTEGVPLHLARP----HG---DPAWFRSAHRALRDLHRA-GITHN  135 (365)
T ss_pred             HHHHHHHHHHHHHhccCCCCCcEEEEcCCcEEEEEccCCCCHHHhCc----cc---hHHHHHHHHHHHHHHHHC-CCeeC
Confidence            3567999999999999999874 44 223356999999876553321    11   146789999999999999 99999


Q ss_pred             cC-CCCCEEECCCCCeEEecccCccccCCCC------------ccccccccCCccccccC
Q 015733           94 DL-NAYRIVFDDDVNPRLSCFGLMKNSRDGR------------SYSTNLAFTPPEYLRTG  140 (401)
Q Consensus        94 dl-k~~Nill~~~~~~kl~Dfg~~~~~~~~~------------~~~~~~~y~aPE~~~~~  140 (401)
                      || ||+|||++.++.+||+|||+++......            ...+++.|++||.+...
T Consensus       136 DL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        136 DLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             CCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChh
Confidence            99 9999999999999999999998754332            22457789999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=8.2e-18  Score=169.51  Aligned_cols=198  Identities=15%  Similarity=0.137  Sum_probs=134.3

Q ss_pred             HHHHHHHHH--HhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           18 TYFIVSLVL--IASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        18 ~~f~~E~~~--l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.|.+++.-  ...++|||.+.+.....     ++|-+|.-.+|.+.+. .+.-|..-+.+-|+.|++.||.-+|.. ||
T Consensus        64 ~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyvkhnLyDRlS-TRPFL~~iEKkWiaFQLL~al~qcH~~-gV  141 (1431)
T KOG1240|consen   64 RPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYVKHNLYDRLS-TRPFLVLIEKKWIAFQLLKALSQCHKL-GV  141 (1431)
T ss_pred             hHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHHhhhhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence            344443333  45568999887763222     3466776655555443 334466777888999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----C-------ccccccccCCccccccC----------c-cCCCCcc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----R-------SYSTNLAFTPPEYLRTG----------R-VTPESVM  148 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~-------~~~~~~~y~aPE~~~~~----------~-~~~~~Dv  148 (401)
                      .|||||++||||+..+.+.|+||..-+...-.    .       +.....+|.|||.+...          . .+++-||
T Consensus       142 cHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDI  221 (1431)
T KOG1240|consen  142 CHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDI  221 (1431)
T ss_pred             cccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhh
Confidence            99999999999999999999999766542211    1       11234689999988641          2 6788999


Q ss_pred             hhhHHHHHHHHhCCCCCCchhh-HHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          149 YSFGTLLLDLLSGKHIPPSHAL-DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       149 ~slG~~l~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||+||++.||++-+.|.+.... -..+.+. .......+ ..++   ...++++|..|++.||++|.|+++.++.
T Consensus       222 FS~GCViaELf~Eg~PlF~LSQL~aYr~~~-~~~~e~~L-e~Ie---d~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  222 FSAGCVIAELFLEGRPLFTLSQLLAYRSGN-ADDPEQLL-EKIE---DVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             hhhhHHHHHHHhcCCCcccHHHHHhHhccC-ccCHHHHH-HhCc---CccHHHHHHHHHccCchhccCHHHHHHh
Confidence            9999999999986544333211 1111111 10000000 1111   2368899999999999999999999985

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.71  E-value=1e-16  Score=150.63  Aligned_cols=209  Identities=13%  Similarity=0.138  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhhhCC----CeEEEeeee------ccccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           19 YFIVSLVLIASMSS----FILLAVIFM------FQIPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        19 ~f~~E~~~l~~~~h----~niv~~~~~------~~~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+..|+.++..+.+    +.+..+...      +...||+.+..++..+.... .+.++..++.+++.|++.+|+++|+.
T Consensus        62 ~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~  141 (322)
T KOG1164|consen   62 VLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK  141 (322)
T ss_pred             cchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc
Confidence            57788888888872    233333322      23459999988888877544 47899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCC-----CCeEEecccCccccC-----------CC---CccccccccCCccccccCccCCCCcc
Q 015733           88 ERALYHDLNAYRIVFDDD-----VNPRLSCFGLMKNSR-----------DG---RSYSTNLAFTPPEYLRTGRVTPESVM  148 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~-----~~~kl~Dfg~~~~~~-----------~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv  148 (401)
                       |++||||||.|+++...     ..+.|.|||+++...           ..   ..+.||..|.++.+..+...+++.|+
T Consensus       142 -G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDl  220 (322)
T KOG1164|consen  142 -GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDL  220 (322)
T ss_pred             -CcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhh
Confidence             99999999999999865     358999999998211           11   12448999999999999999999999


Q ss_pred             hhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          149 YSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       149 ~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||++.++.+++.|..|+........ ....................+..+.++...+-..+...+|....+...|.....
T Consensus       221 es~~Y~l~el~~g~LPW~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~  299 (322)
T KOG1164|consen  221 ESLFYMLLELLKGSLPWEALEMTDL-KSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFD  299 (322)
T ss_pred             hhHHHHHHHHhcCCCCCccccccch-HHHHHHHhhhhccccccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHH
Confidence            9999999999999988643221100 011111111111111233455677777777777999999999999888776654


Q ss_pred             C
Q 015733          229 D  229 (401)
Q Consensus       229 ~  229 (401)
                      .
T Consensus       300 ~  300 (322)
T KOG1164|consen  300 S  300 (322)
T ss_pred             h
Confidence            3

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.71  E-value=7.5e-18  Score=152.02  Aligned_cols=138  Identities=19%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCc-cccccccCCccccccC---
Q 015733           65 MKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS-YSTNLAFTPPEYLRTG---  140 (401)
Q Consensus        65 l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~y~aPE~~~~~---  140 (401)
                      +....+..+..|+++.+++||+. |+||+||+|+|++++.+|.+.|+||+.....+.... ...+..|.+||.....   
T Consensus       142 l~~~arl~lT~Q~I~lvA~Lh~~-GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~  220 (288)
T PF14531_consen  142 LAFAARLSLTVQMIRLVANLHSY-GLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQF  220 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhc-ceEecccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhccc
Confidence            44556677889999999999999 999999999999999999999999988776655433 3445779999977542   


Q ss_pred             -----ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          141 -----RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       141 -----~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                           .++.+.|.|++|+++|.|++|..||...........         .-..+. +.+..+..||..+|++||.+|
T Consensus       221 ~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~---------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  221 GQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW---------DFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG---------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             CcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc---------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence                 478899999999999999999999764321111111         112334 788999999999999999988

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.7e-16  Score=149.07  Aligned_cols=106  Identities=25%  Similarity=0.354  Sum_probs=101.5

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      ++.+.+.+.+|+.+|+.|+|..|+..|++||+.+|+ ++.+|.|||.||.++|.+..|++|++++|+++|++.++|++.|
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            344777888899999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++..+.+|+.|++.|++++++||+..
T Consensus       434 ~al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  434 AALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            999999999999999999999998764

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2e-17  Score=155.85  Aligned_cols=162  Identities=23%  Similarity=0.344  Sum_probs=116.4

Q ss_pred             EeeecCC-cccccccC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC
Q 015733           46 SYEFHCL-TFSNNFSG--ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG  122 (401)
Q Consensus        46 v~Ey~~~-~l~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~  122 (401)
                      .|++|.. ++.+.+.+  .....++.....++.|++.|++|   + +.+|+|+||.||++..+..+||+|||+.......
T Consensus       334 ~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k-~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~  409 (516)
T KOG1033|consen  334 QMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K-GLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD  409 (516)
T ss_pred             hhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c-cchhhhccccccccccchhhhhhhhhheeecccC
Confidence            6777774 44444432  23456888999999999999999   7 8999999999999999999999999997764432


Q ss_pred             ----------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC-CCCCCchhhHHhhhccccccccccccCCCC
Q 015733          123 ----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-KHIPPSHALDLIRDRNIQTLTDSCLEGQFS  191 (401)
Q Consensus       123 ----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (401)
                                +...||..||+||.+.+..|+.++||||||++|+|+++- ...+.       .......+-+..+.+.+-
T Consensus       410 ~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e-------r~~t~~d~r~g~ip~~~~  482 (516)
T KOG1033|consen  410 ETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE-------RIATLTDIRDGIIPPEFL  482 (516)
T ss_pred             CcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH-------HHHhhhhhhcCCCChHHh
Confidence                      234579999999999999999999999999999999982 21111       111111111111111111


Q ss_pred             hHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          192 SDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       192 ~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .+ -++-..|+.+++.+.|.+||++.++
T Consensus       483 ~d-~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  483 QD-YPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             hc-CcHHHHHHHHhcCCCcccCchHHHH
Confidence            11 1234589999999999999955444

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.67  E-value=1.7e-16  Score=136.25  Aligned_cols=145  Identities=8%  Similarity=-0.034  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHhhhCC-CeEEEee-eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           16 QSTYFIVSLVLIASMSS-FILLAVI-FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h-~niv~~~-~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      ....|.+|+.++.++.| +++..++ .....++|||+.|..+.....      . ....++.|++.+|.++|+. ||+||
T Consensus        44 ~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~~L~~~~~------~-~~~~~~~qi~~~L~~lH~~-GIvHr  115 (218)
T PRK12274         44 AWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGAAMYQRPP------R-GDLAYFRAARRLLQQLHRC-GVAHN  115 (218)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCccHHhhhh------h-hhHHHHHHHHHHHHHHHHC-cCccC
Confidence            34468899999999965 5555555 333466999999875542211      1 1235788999999999999 99999


Q ss_pred             cC-CCCCEEECCCCCeEEecccCccccCCCCcc-----------------ccccccCCcccccc--CccCCCCcchhhHH
Q 015733           94 DL-NAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-----------------STNLAFTPPEYLRT--GRVTPESVMYSFGT  153 (401)
Q Consensus        94 dl-k~~Nill~~~~~~kl~Dfg~~~~~~~~~~~-----------------~~~~~y~aPE~~~~--~~~~~~~Dv~slG~  153 (401)
                      || ||.|||++.++.++|+|||++.........                 ..++.|+.|+...-  .+--...+.++.|.
T Consensus       116 DL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~  195 (218)
T PRK12274        116 DLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGK  195 (218)
T ss_pred             CCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcc
Confidence            99 799999999999999999999865543310                 12566777765432  22235678999999


Q ss_pred             HHHHHHhCCCCCCch
Q 015733          154 LLLDLLSGKHIPPSH  168 (401)
Q Consensus       154 ~l~el~tg~~p~~~~  168 (401)
                      -+|.++|++.+..++
T Consensus       196 ~~~~~~~~~~~~~~~  210 (218)
T PRK12274        196 PVYRFVTRRVLHWED  210 (218)
T ss_pred             hHHHHHhccCCcccc
Confidence            999999999876543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=1.5e-15  Score=125.18  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHc
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFAL  377 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  377 (401)
                      +...|..+++.|+|++|+..|.+++.++|. +..+|.++|.++..+|++++|+..|++|++++|+++.+++++|.++..+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            566799999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccchhhh
Q 015733          378 GKENEAQAALREASILENKKS  398 (401)
Q Consensus       378 ~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |++++|++.|++|++++|.+.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999998753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=7e-16  Score=144.94  Aligned_cols=102  Identities=28%  Similarity=0.426  Sum_probs=99.0

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +.+++.+|+..|..|+|+.|+.+|++||.++|. +...|.||+.||..+|+|++|++|..+.++++|+|+++|.++|.++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            456789999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhh
Q 015733          375 FALGKENEAQAALREASILENKK  397 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ..+|+|++|+..|.++|+.||++
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n  103 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSN  103 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCch
Confidence            99999999999999999999875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.5e-15  Score=125.58  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=101.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC----HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS----PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMA  366 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  366 (401)
                      ....+..++..|+.+|++|+|++|...|..||++.|...    ..+|.|||.|+++++.++.||.+|.+||+++|.+-+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            466788999999999999999999999999999999732    3489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.++|.+|.++.+|++|+++|++.+++||+..
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            99999999999999999999999999999754

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.63  E-value=3.4e-16  Score=133.47  Aligned_cols=208  Identities=12%  Similarity=0.097  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHhhhCCC----eEEEee--eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSF----ILLAVI--FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~----niv~~~--~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+...|..+...++|-    .+-.+.  ...+.+||++...++.+++.-..+.++.++++-++-|++.-++|+|.+ ++
T Consensus        54 hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r-~f  132 (341)
T KOG1163|consen   54 HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLR-NF  132 (341)
T ss_pred             CcchhHHHHHHHHhccCCCCchhhhhccccccceeeeeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhh-cc
Confidence            34567788888888763    233332  344467999999999888887788899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCC---CCeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHHHHH
Q 015733           91 LYHDLNAYRIVFDDD---VNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLL  156 (401)
Q Consensus        91 vH~dlk~~Nill~~~---~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  156 (401)
                      |||||||+|+|..-+   ..+-++|||+++...+.           ....||..|.+--...+...+.+.|+=|+|.+|.
T Consensus       133 iHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLm  212 (341)
T KOG1163|consen  133 IHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLM  212 (341)
T ss_pred             ccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceee
Confidence            999999999999744   45789999999975432           2346788999888888778899999999999999


Q ss_pred             HHHhCCCCCCchhhHHhhhcccccccccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          157 DLLSGKHIPPSHALDLIRDRNIQTLTDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       157 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ++.-|..|+.+-... ........+......   .......|.++.-.+.-|-...-.+-|.-.-+-+.+..+
T Consensus       213 YfnrG~LPWQglka~-tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriL  284 (341)
T KOG1163|consen  213 YFNRGSLPWQGLKAA-TKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRIL  284 (341)
T ss_pred             eeecCCCcccccchh-hHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            999999997663211 111111111111111   112345678899999999999899999866555544443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.62  E-value=2.5e-16  Score=158.70  Aligned_cols=133  Identities=17%  Similarity=0.150  Sum_probs=107.9

Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC-------------------CCccccccccCCccccc
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-------------------GRSYSTNLAFTPPEYLR  138 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-------------------~~~~~~~~~y~aPE~~~  138 (401)
                      +.+++|||+. ||+|||+||+|.+|+.-|++|+.|||+++....                   .+..+||+.|.|||++.
T Consensus       153 vla~Eylh~y-givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVil  231 (1205)
T KOG0606|consen  153 VLAVEYLHSY-GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVIL  231 (1205)
T ss_pred             hHHhHhhccC-CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhh
Confidence            7889999999 999999999999999999999999999876321                   12347899999999999


Q ss_pred             cCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       139 ~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      ...|+...|.|++|+|+||.+.|..||.++..+......+..   .+...+-....+++++++|.++|+.+|..|-
T Consensus       232 rqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd---~i~wpE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  232 RQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISD---DIEWPEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhh---hccccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence            999999999999999999999999999887544332222221   1222222455678999999999999999994

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-15  Score=135.03  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhhhCC-CeEEEee-----eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           19 YFIVSLVLIASMSS-FILLAVI-----FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        19 ~f~~E~~~l~~~~h-~niv~~~-----~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      +..-|....+.+.+ ++|-.++     +....+|+|++..+|.+++.-.++.++.+++..+|.|++.-++|+|++ .+|.
T Consensus        69 QLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k-~LIY  147 (449)
T KOG1165|consen   69 QLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEK-DLIY  147 (449)
T ss_pred             hHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhc-ceee
Confidence            34445556665554 4555544     444467999999999999988889999999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCC-----CCeEEecccCccccCC-----------CCccccccccCCccccccCccCCCCcchhhHHHHH
Q 015733           93 HDLNAYRIVFDDD-----VNPRLSCFGLMKNSRD-----------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLL  156 (401)
Q Consensus        93 ~dlk~~Nill~~~-----~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  156 (401)
                      |||||+|+||...     ..+.++|||+++...+           ..+.+||..||+--...+...+.+.|+=|+|=++.
T Consensus       148 RDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFm  227 (449)
T KOG1165|consen  148 RDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFM  227 (449)
T ss_pred             cccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhh
Confidence            9999999999754     3579999999997443           24567899999999999899999999999999999


Q ss_pred             HHHhCCCCCCchhhHHhhhcccccccccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          157 DLLSGKHIPPSHALDLIRDRNIQTLTDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       157 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +.+-|..|+.+...+.. ......+-+..-.   ..+....|.++..-+.-.-+.+-.+-|.-.-+...+.
T Consensus       228 YFLRGsLPWQGLKA~tn-K~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~  297 (449)
T KOG1165|consen  228 YFLRGSLPWQGLKADTN-KEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFD  297 (449)
T ss_pred             hhccCCCccccccCcch-HHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHH
Confidence            99999999766422111 1111111111100   0112345777888888777778888888655444333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.61  E-value=4.9e-15  Score=140.49  Aligned_cols=103  Identities=26%  Similarity=0.313  Sum_probs=98.9

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+..+|..++..|+|++|++.|++||+++|+ ++.+|+++|.+|..+|++++|+.++++|++++|+++.+|+++|.+|
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            345788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhhh
Q 015733          375 FALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.+|+|++|+..|++|++++|.+.
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999998754

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.61  E-value=5.3e-16  Score=135.97  Aligned_cols=124  Identities=12%  Similarity=0.020  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeee-------------ccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFM-------------FQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~-------------~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      +.|.+|+..+.++.||++......             ...+||||++|..+..+.    .++.    ....+++.+|..+
T Consensus        80 ~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~----~~~~----~~~~~i~~~l~~l  151 (232)
T PRK10359         80 DYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP----EISE----DVKAKIKASIESL  151 (232)
T ss_pred             HHHHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhh----hccH----HHHHHHHHHHHHH
Confidence            347889999999999986665522             124599999986444332    2333    3456999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |+. |++|||+||+||+++.+| ++|+|||..+........        ..++....+..++|+||||+++..+.
T Consensus       152 H~~-gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~--------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        152 HQH-GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK--------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             HHc-CCccCCCChHHEEEeCCC-EEEEECCCcccccchhhH--------HHHHHHhHhcccccccceeEeehHHH
Confidence            999 999999999999999988 999999987655322111        01333445678999999999987654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.60  E-value=1.4e-15  Score=135.45  Aligned_cols=106  Identities=24%  Similarity=0.345  Sum_probs=101.3

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+.+++++|+.||++|.|++||.||+++|..+|. ++..+.|||.+|++++.|..|..||+.|+.++-.+.+||.++|.
T Consensus        95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~  173 (536)
T KOG4648|consen   95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ  173 (536)
T ss_pred             HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            44556899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhhc
Q 015733          373 ALFALGKENEAQAALREASILENKKSA  399 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~~  399 (401)
                      +-..+|+.++|.++++.+|+++|+.++
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence            999999999999999999999997653

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.58  E-value=4.4e-15  Score=128.32  Aligned_cols=98  Identities=9%  Similarity=0.022  Sum_probs=75.8

Q ss_pred             HHHHHHHhhhCCCeEEEee---eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCceeccCC
Q 015733           21 IVSLVLIASMSSFILLAVI---FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC-TSKERALYHDLN   96 (401)
Q Consensus        21 ~~E~~~l~~~~h~niv~~~---~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l-H~~~~ivH~dlk   96 (401)
                      ..|+..+.++.|+++....   .....+||||++|+.+........+++...+..++.|++.+|.++ |+. ||+|||||
T Consensus        67 ~~E~~~l~~l~~~~v~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~-giiHrDlk  145 (190)
T cd05147          67 EKEMRNLKRLVTAGIPCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDC-RLVHADLS  145 (190)
T ss_pred             HHHHHHHHHHHHCCCCCCcEEEecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhC-CcccCCCC
Confidence            4599999999765532111   122256999999864433222346799999999999999999999 688 99999999


Q ss_pred             CCCEEECCCCCeEEecccCccccC
Q 015733           97 AYRIVFDDDVNPRLSCFGLMKNSR  120 (401)
Q Consensus        97 ~~Nill~~~~~~kl~Dfg~~~~~~  120 (401)
                      |+|||++ ++.++|+|||++....
T Consensus       146 P~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         146 EYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             HHHEEEE-CCcEEEEEccccccCC
Confidence            9999998 4789999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.57  E-value=3e-14  Score=115.67  Aligned_cols=102  Identities=15%  Similarity=0.005  Sum_probs=98.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .+..+.+...|..+++.|++++|...|+-+..++|. ++..|+++|.|+..+|+|++||..|.+|+.++|+++.++++.|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            567778889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccc
Q 015733          372 AALFALGKENEAQAALREASILE  394 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      .|+..+|+.+.|.+.|+.|+.+-
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.5e-14  Score=132.73  Aligned_cols=108  Identities=20%  Similarity=0.295  Sum_probs=98.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC--------------CHHHHHhHHHHHHhCCChHHHHHHHHHh
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV--------------SPTAFARRSLSYLMSDMPQEALNDASQA  356 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  356 (401)
                      ....+...+..|+.+|+.|+|..|...|.+|+..-...              ...++.|+|.||+++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            56788899999999999999999999999998753310              1238999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          357 QVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       357 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |+++|+|.+|+|++|.||..+|+|+.|+.+|++|++++|.+-
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk  325 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK  325 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999999999999999999999999999763

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.4e-14  Score=134.47  Aligned_cols=97  Identities=26%  Similarity=0.350  Sum_probs=93.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....+..++.+|+.+|++|+|++||++|++||++.|+ .+.+|.||+.||..+|++++.++++.+|++++|++.++++|+
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RR  189 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRR  189 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            4578899999999999999999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHH
Q 015733          371 AAALFALGKENEAQAALR  388 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~  388 (401)
                      +.++..+|++++|+.+..
T Consensus       190 A~A~E~lg~~~eal~D~t  207 (606)
T KOG0547|consen  190 ASAHEQLGKFDEALFDVT  207 (606)
T ss_pred             HHHHHhhccHHHHHHhhh
Confidence            999999999999998865

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.55  E-value=1e-14  Score=126.36  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhhCCCeEEE--ee-eeccccEeeecCCcc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCceec
Q 015733           19 YFIVSLVLIASMSSFILLA--VI-FMFQIPSYEFHCLTF-SNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~--~~-~~~~~~v~Ey~~~~l-~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~~ivH~   93 (401)
                      .+..|...+.++.|+++..  .+ .....+||||++|+. ..... ...+++......++.|++.++.++|+ . ||+||
T Consensus        65 ~~~~E~~~l~~l~~~~i~~p~~~~~~~~~lVmE~~~g~~~~~~~l-~~~~~~~~~~~~i~~~l~~~l~~lH~~~-givHr  142 (190)
T cd05145          65 WAEKEFRNLKRLYEAGVPVPEPILLKKNVLVMEFIGDDGSPAPRL-KDVPLEEEEAEELYEQVVEQMRRLYQEA-GLVHG  142 (190)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCEEEEEEecCCCchhhhh-hhccCCHHHHHHHHHHHHHHHHHHHHhC-CEecC
Confidence            3467899999999887522  11 222356999999763 22222 34568888999999999999999999 8 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCC
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRD  121 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~  121 (401)
                      ||||+||+++ ++.++|+|||+++....
T Consensus       143 DlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         143 DLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             CCChhhEEEE-CCCEEEEEcccceecCC
Confidence            9999999999 88999999999877554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.54  E-value=9.6e-14  Score=113.30  Aligned_cols=108  Identities=13%  Similarity=0.112  Sum_probs=101.9

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+.........|..+++.|++++|++.|+++++.+|. +..++.++|.++..+|++++|+..++++++++|+++..++.
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            34555667889999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++...|++++|++.|+++++++|.+.
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999998764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.54  E-value=9.3e-14  Score=128.82  Aligned_cols=104  Identities=12%  Similarity=0.030  Sum_probs=100.2

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..++.+|..+...|++++|+..|+++++++|+ ++.+|+++|.++..+|++++|+..+++|++++|++..+++++|.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44667999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhh
Q 015733          373 ALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +++..|++++|++.|+++++++|++
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=2.7e-13  Score=117.77  Aligned_cols=107  Identities=12%  Similarity=0.098  Sum_probs=100.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHH-HhCCC--hHHHHHHHHHhHhhCCCChHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSY-LMSDM--PQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      .+.+...|...|..+...|++++|+..|++|++++|+ ++.++.++|.++ ...|+  +++|++.++++++++|+++.++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            4566778999999999999999999999999999999 999999999985 67788  5999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.+|.+++..|+|++|+..|+++++++|.+.
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999998754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2.5e-13  Score=120.81  Aligned_cols=104  Identities=23%  Similarity=0.299  Sum_probs=98.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc---CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV---GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      .+.|..++..|+.+|+.++|..|+.+|+++|+.   ||+.++.+|+|||.|.+.+|+|..|+.||.+|+.++|++.++++
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~  157 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI  157 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence            457889999999999999999999999999986   67778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          369 LQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      +-|.|++.++++++|..+.+..+++|.
T Consensus       158 R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  158 RGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            999999999999999999999988874

>PRK10345 hypothetical protein; Provisional

Probab=99.44  E-value=2.5e-13  Score=118.63  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHhhh-----CCCeEEEeeeeccc---------cEeeecC--C-cccccccCCCCCCCHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-----SSFILLAVIFMFQI---------PSYEFHC--L-TFSNNFSGETQPMKWAMRLRVALHIA   78 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-----~h~niv~~~~~~~~---------~v~Ey~~--~-~l~~~~~~~~~~l~~~~~~~i~~qi~   78 (401)
                      ..+.+.+|+.++..+     +||||+++++.++.         .|+||+.  + ++...+..  ..+++.  ..++.+++
T Consensus        39 ~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~--~~~~e~--~~~~~~~L  114 (210)
T PRK10345         39 GDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQ--CRYEED--VAQLRQLL  114 (210)
T ss_pred             hHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHc--ccccHh--HHHHHHHH
Confidence            356799999999999     57999999943331         3788843  3 55555533  346665  35678888


Q ss_pred             HHH-HHHhcCCCceeccCCCCCEEECC----CCCeEEecccC
Q 015733           79 EAL-EYCTSKERALYHDLNAYRIVFDD----DVNPRLSCFGL  115 (401)
Q Consensus        79 ~~l-~~lH~~~~ivH~dlk~~Nill~~----~~~~kl~Dfg~  115 (401)
                      .++ +|||++ +|+||||||+|||++.    ++.++|+||+.
T Consensus       115 ~~l~~yLh~~-~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G  155 (210)
T PRK10345        115 KKLKRYLLDN-RIVTMELKPQNILCQRISESEVIPVVCDNIG  155 (210)
T ss_pred             HHHHHHHHHC-CEeecCCCHHHEEEeccCCCCCcEEEEECCC
Confidence            887 999999 9999999999999974    34799999543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=1.1e-12  Score=124.58  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             hhhhhhhHHHHHHHhhcCCCCccchhhhhhhhccchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHh
Q 015733          256 CLRMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFAR  335 (401)
Q Consensus       256 ~~~~~~~~i~e~l~~~g~~~~~~~~~~~~~~~~t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~  335 (401)
                      ........|.+.+-..++..+..              .++.-....|..++-.|+|+.|+.+|+.||..+|. +...|+.
T Consensus       405 ~~~~~l~~i~~~fLeaa~~~~~~--------------~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNR  469 (579)
T KOG1125|consen  405 LDSSHLAHIQELFLEAARQLPTK--------------IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNR  469 (579)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCC--------------CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHH
Confidence            33445556677766655544331              23344567899999999999999999999999999 9999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          336 RSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       336 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|.++..-.+.++||..|.+|+++.|.+..++|++|+++..+|.|++|+++|-.||.+.++.
T Consensus       470 LGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  470 LGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             hhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999998763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.43  E-value=3.8e-13  Score=128.31  Aligned_cols=107  Identities=16%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.-+....+.|..+-++|++++|+.+|..||.+.|. .+++|.|+|..|-.+|+.++|+++|.+||.++|.+++|+.++
T Consensus       384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL  462 (966)
T KOG4626|consen  384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL  462 (966)
T ss_pred             ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence            3455777888899999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|...|+..+|+..|+.||+++|+-.
T Consensus       463 asi~kDsGni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  463 ASIYKDSGNIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence            9999999999999999999999998644

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.8e-13  Score=122.88  Aligned_cols=105  Identities=25%  Similarity=0.364  Sum_probs=98.5

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC---CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV---SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ......++..|+..|++|+|..|.++|+.||.++|..   ++-+|.|||.++..+|+.++|+.+|+.|++|+|.+.+++.
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence            4567789999999999999999999999999999973   3558999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          369 LQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ++|.|+..+++|++|+++|++|++++.+
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999998754

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=4.3e-14  Score=141.78  Aligned_cols=197  Identities=13%  Similarity=0.073  Sum_probs=146.3

Q ss_pred             HHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCccccccc-CCCC-CCCHHHHHHHHHHHHHHHHHHh-cCCCceec
Q 015733           23 SLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFS-GETQ-PMKWAMRLRVALHIAEALEYCT-SKERALYH   93 (401)
Q Consensus        23 E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~-~~~~-~l~~~~~~~i~~qi~~~l~~lH-~~~~ivH~   93 (401)
                      |..+=..++ |+|+++.+....     ..+++|..|+...... .... ..+...+-.++.|+..++.|+| .. ++.||
T Consensus        70 e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~-~~~h~  148 (601)
T KOG0590|consen   70 ETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPEN-GVTHR  148 (601)
T ss_pred             cccccccccccccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCccc-ccccC
Confidence            555555666 999999884443     3388897776555444 3333 6677778899999999999999 77 99999


Q ss_pred             cCCCCCEEECCCC-CeEEecccCccccCC-CC------cccc-ccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCC
Q 015733           94 DLNAYRIVFDDDV-NPRLSCFGLMKNSRD-GR------SYST-NLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        94 dlk~~Nill~~~~-~~kl~Dfg~~~~~~~-~~------~~~~-~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||||+|.+++..+ .++++|||++..... ..      ..+| ++.|+|||...+ ....+..|+||.|+++.-+++|..
T Consensus       149 ~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~  228 (601)
T KOG0590|consen  149 DIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGEL  228 (601)
T ss_pred             CCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCC
Confidence            9999999999999 999999999988655 21      2467 999999999988 456788999999999999999998


Q ss_pred             CCCchhhHHhhhccccccccccc--cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCL--EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |........   ...........  .............+++..++..+|+.|.+.+++...-
T Consensus       229 p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~  287 (601)
T KOG0590|consen  229 PWDFPSRKD---GRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLDN  287 (601)
T ss_pred             Ccccccccc---ccceeecccccccccCccccCChhhhhcccccccCCchhccccccccccc
Confidence            854322111   11111111110  1122345667788999999999999999999886543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.41  E-value=6.6e-13  Score=94.86  Aligned_cols=67  Identities=22%  Similarity=0.195  Sum_probs=58.6

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHccch
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALG-KENEAQAALREASILEN  395 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~  395 (401)
                      ++..|+++|.+++..|+|++|+..|++|++++|+++.+|+++|.++..+| ++++|+++|++|+++||
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57788888888888888888888888888888888888888888888888 68888888888888887

...

>smart00090 RIO RIO-like kinase

Probab=99.40  E-value=8.5e-13  Score=118.04  Aligned_cols=101  Identities=10%  Similarity=-0.057  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhhhCCCe--EEEee-eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC-ceec
Q 015733           18 TYFIVSLVLIASMSSFI--LLAVI-FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER-ALYH   93 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~n--iv~~~-~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~-ivH~   93 (401)
                      ..+..|+..+.++.+..  +..++ .....+||||++|..+........++.......++.|++.+|.+||+. | ++||
T Consensus        95 ~~~~~E~~~L~~L~~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-g~iiH~  173 (237)
T smart00090       95 LWAEKEFRNLQRLYEAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKE-GELVHG  173 (237)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeeeEecCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhc-CCEEeC
Confidence            34678999999997632  22222 223357999999864433332334566777789999999999999999 9 9999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccC
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSR  120 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~  120 (401)
                      ||||+||+++ ++.++|+|||.+....
T Consensus       174 Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      174 DLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             CCChhhEEEE-CCCEEEEEChhhhccC
Confidence            9999999999 8899999999876544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=2.6e-12  Score=131.46  Aligned_cols=102  Identities=25%  Similarity=0.342  Sum_probs=95.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      ...+..++.+|+.+++.|+|++|+..|+++|++.|+  +.+|.|+|.||.++|+|++|+.+|++|++++|++.++++++|
T Consensus       124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a  201 (615)
T TIGR00990       124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA  201 (615)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345778999999999999999999999999999997  568999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccch
Q 015733          372 AALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      .+|..+|+|++|+.+|..+..+++
T Consensus       202 ~a~~~lg~~~eA~~~~~~~~~~~~  225 (615)
T TIGR00990       202 NAYDGLGKYADALLDLTASCIIDG  225 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999988877664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.39  E-value=1.4e-12  Score=116.61  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             hccchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHH
Q 015733          287 MWTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMA  366 (401)
Q Consensus       287 ~~t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  366 (401)
                      .++....++....+.|+.++.+|++.+|+..|..|++.+|+ +..+++.||.+|+.+|+-..|+.|+.++|++.|++..|
T Consensus        30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A  108 (504)
T KOG0624|consen   30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA  108 (504)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence            33456678899999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ...+|.++.++|++++|..+|++.|+-+|++.
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999998653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.1e-12  Score=134.81  Aligned_cols=170  Identities=14%  Similarity=0.127  Sum_probs=122.9

Q ss_pred             ccEeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEC-------CCCCeEEecccC
Q 015733           44 IPSYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFD-------DDVNPRLSCFGL  115 (401)
Q Consensus        44 ~~v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~-------~~~~~kl~Dfg~  115 (401)
                      .+|+||.+ |++++++. ..+.++|..+..++.|++.-+++||.. +|||+||||+|+||.       +...++|+|||.
T Consensus       770 ~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~~-~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~  847 (974)
T KOG1166|consen  770 VLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHAM-GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGR  847 (974)
T ss_pred             eeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHhc-ceecccCCcceeEeecccCCCCcccceEEEeccc
Confidence            45999998 78888776 667899999999999999999999999 999999999999994       244689999998


Q ss_pred             ccc---cCCCCcc---ccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCC
Q 015733          116 MKN---SRDGRSY---STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQ  189 (401)
Q Consensus       116 ~~~---~~~~~~~---~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
                      +.-   ..+++.+   .+|-.+-.+|+..+.+++...|.|.|..+++-|+.|+..      . ..++....+ ...++.-
T Consensus       848 siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~------q-~~~g~~~~~-~~~~~Ry  919 (974)
T KOG1166|consen  848 SIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM------E-VKNGSSWMV-KTNFPRY  919 (974)
T ss_pred             ceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH------H-hcCCcceec-cccchhh
Confidence            765   3444333   457788999999999999999999999999999999842      1 111111111 1111111


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          190 FSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       190 ~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      +..+.   ..++...+|+.|-..=|...++...++..
T Consensus       920 ~~~~~---W~~~F~~lLN~~~~~~p~l~~lr~~~~~~  953 (974)
T KOG1166|consen  920 WKRDM---WNKFFDLLLNPDCDTLPNLQELRTELEEV  953 (974)
T ss_pred             hhHHH---HHHHHHHHhCcCcccchhHHHHHHHHHHH
Confidence            11222   34566777774433336666666666554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.1e-12  Score=111.59  Aligned_cols=101  Identities=22%  Similarity=0.293  Sum_probs=96.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+..+|+.+|..++|..||.+|.+||.++|. .+.+|.|+|.||+++.+++.+..++.+|++++|+-.+++|.+|.
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            45677899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccc
Q 015733          373 ALFALGKENEAQAALREASILE  394 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      ++.+.+.|++|+..+.+|..+-
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHHH
Confidence            9999999999999999997764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.36  E-value=2.4e-12  Score=122.96  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=99.1

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      .....+....+.|+.+.+.|.+++|+..|.+|++..|. .+.+++|+|.+|.+.|++++|+.+|++||.++|.+++++.+
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN  427 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence            35567888899999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          370 QAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +|+.|-.+|+-++|+.+|.+|+.++|.
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            999999999999999999999999985

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=6.1e-13  Score=118.68  Aligned_cols=199  Identities=16%  Similarity=0.136  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCc-cccccc---CCCCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLT-FSNNFS---GETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~-l~~~~~---~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      |.+.-..=..-+-++.|.|||++...+.          ..+.|||..+ +...+.   .....+....-.+|+.||++||
T Consensus       110 qeek~~~vFdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal  189 (458)
T KOG1266|consen  110 QEEKRRAVFDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSAL  189 (458)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Confidence            3333333345566778999888873222          2388999844 333332   2456678888889999999999


Q ss_pred             HHHhcC-CCceeccCCCCCEEECCCCCeEEecccCccccC--------CCCccccccccCCccccccCccCCCCcchhhH
Q 015733           82 EYCTSK-ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR--------DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        82 ~~lH~~-~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .|||+. +.|+|+++..+-|++..+|-+|+.--.-.....        ......+-++|.+||.-.....+.++|||+||
T Consensus       190 ~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fg  269 (458)
T KOG1266|consen  190 SYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFG  269 (458)
T ss_pred             hhhhccCCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhh
Confidence            999998 569999999999999999988886321111100        01123456889999987777788899999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...+||..+..-+................+-.        -....-++++..|++..|..||++++++.+
T Consensus       270 mcAlemailEiq~tnseS~~~~ee~ia~~i~~--------len~lqr~~i~kcl~~eP~~rp~ar~llfH  331 (458)
T KOG1266|consen  270 MCALEMAILEIQSTNSESKVEVEENIANVIIG--------LENGLQRGSITKCLEGEPNGRPDARLLLFH  331 (458)
T ss_pred             HHHHHHHHheeccCCCcceeehhhhhhhheee--------ccCccccCcCcccccCCCCCCcchhhhhcC
Confidence            99999988875422211111111111111100        001112468999999999999999988764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.35  E-value=2.2e-12  Score=92.10  Aligned_cols=67  Identities=21%  Similarity=0.371  Sum_probs=64.6

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-ChHHHHHHHHHhHhhCC
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-MPQEALNDASQAQVISP  361 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p  361 (401)
                      .+..+...|..++..|+|++|+..|+++|+++|+ ++.+|+++|.+|..+| ++++|++++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678899999999999999999999999999999 9999999999999999 79999999999999998

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.34  E-value=6e-13  Score=124.47  Aligned_cols=104  Identities=24%  Similarity=0.324  Sum_probs=100.1

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..++.+|+..+..++|+.|+..|+|||+++|+ .+.+|.+||.++++.++|.+|+.|+.+||+++|...++|+++|.+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a   81 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA   81 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence            4667889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ...++++.+|+.+|++..++.|++.
T Consensus        82 ~m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   82 VMALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             HHhHHHHHHHHHHHHHhhhcCcCcH
Confidence            9999999999999999999999765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.34  E-value=1.3e-11  Score=105.09  Aligned_cols=99  Identities=14%  Similarity=0.027  Sum_probs=61.2

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+....+.|..|++.|++..|...+++||+.||+ ...+|.-||..|.++|+.+.|-+.|++|+.++|++.+.+++.|.
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            34445555666666666666666666666666666 66666666666666666666666666666666666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHc
Q 015733          373 ALFALGKENEAQAALREASI  392 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~  392 (401)
                      -++..|+|++|...|++|+.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHh
Confidence            66666666666666666653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.34  E-value=1.9e-11  Score=97.09  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=95.2

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---hHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPVW---HMAAY  368 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  368 (401)
                      ...+...|..+++.|++++|++.|.++++..|+ +   ..+++.+|.++...|++++|+..+++++..+|++   +.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            356788999999999999999999999999987 5   5689999999999999999999999999999986   67899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|.++..+|++++|+..|+++++..|++.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            999999999999999999999999988654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.33  E-value=2.9e-12  Score=95.30  Aligned_cols=83  Identities=22%  Similarity=0.323  Sum_probs=75.0

Q ss_pred             hcCChHHHHHHHHHHHhcCCCC-CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHH
Q 015733          307 RHKDFRASIECYTQFIDVGTMV-SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQA  385 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~  385 (401)
                      .+|+|+.|+..|+++++.+|.. +..+++++|.||++.|+|++|+..+++ ++.+|.+...++.+|.|+..+|+|++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            3689999999999999999962 466888899999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHH
Q 015733          386 ALREA  390 (401)
Q Consensus       386 ~~~~a  390 (401)
                      .|++|
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99986

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.31  E-value=3.8e-11  Score=92.83  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=97.1

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC----h
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW----H  364 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~  364 (401)
                      ++..+....+..+|..+...|+.+.|++.|.++|.+.|. .+.+|+|||.++...|+.++|+.++++|+++.-+-    .
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac  115 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC  115 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence            445667778888999999999999999999999999999 99999999999999999999999999999987654    4


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          365 MAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       365 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      .+|..+|.+|..+|+-+.|..+|+.|.++..
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            5899999999999999999999999988864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=1.9e-11  Score=125.11  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..++..|++++|+..|+++++++|. ...+|.++|.++..+|++++|+.+++++++++|+++.+++.+|.
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  407 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ  407 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34445566666666666666666666666666666 66666666666666666666666666666666666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhh
Q 015733          373 ALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +++.+|++++|+.+|+++++++|++
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccC
Confidence            6666666666666666666666643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.30  E-value=4.1e-11  Score=102.04  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=98.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ....+..+...|..+...|++++|+.+|.+++++.|+.  ...++.++|.++..+|++++|+..+++|+++.|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45667788999999999999999999999999987762  2469999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------hHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFALGK--------------ENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~~~~--------------~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|.++..+|+              +++|++.++++++++|.+.
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999998              7889999999999998754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.30  E-value=2.5e-11  Score=91.12  Aligned_cols=98  Identities=23%  Similarity=0.319  Sum_probs=93.6

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHc
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFAL  377 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  377 (401)
                      +...|..++..|++++|+..+.++++..|. +..++..+|.++...|++++|++.+++++++.|.+..+++.+|.++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            567889999999999999999999999999 8889999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccchh
Q 015733          378 GKENEAQAALREASILENK  396 (401)
Q Consensus       378 ~~~~~A~~~~~~al~l~~~  396 (401)
                      |++++|...++++++.+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.29  E-value=8.6e-12  Score=108.85  Aligned_cols=99  Identities=12%  Similarity=-0.006  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHhhhCCCe--EEEee-eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           16 QSTYFIVSLVLIASMSSFI--LLAVI-FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~n--iv~~~-~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+..+..|+.++..+.|++  +...+ .....+||||++|..+..+...      .....++.+++.++.++|+. |++|
T Consensus        76 ~~~~~~~E~~~l~~l~~~~i~v~~~~~~~~~~lv~e~~~g~~L~~~~~~------~~~~~~~~~i~~~l~~lh~~-gi~H  148 (198)
T cd05144          76 SRLAAQKEFAALKALYEEGFPVPKPIDWNRHAVVMEYIDGVELYRVRVL------EDPEEVLDEILEEIVKAYKH-GIIH  148 (198)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCCceeecCCceEEEEEeCCcchhhcccc------ccHHHHHHHHHHHHHHHHHC-CCCc
Confidence            3455788999999998874  33333 2233569999998654433211      34567889999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRD  121 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~  121 (401)
                      |||||.||+++.++.++|+|||.+.....
T Consensus       149 ~Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         149 GDLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCCcccEEEcCCCcEEEEECCccccCCC
Confidence            99999999999999999999999866544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=3.2e-12  Score=123.40  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=88.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+...+.|...|+.+--+++++.||++|.+||++||. .+-+|..+|.=+....+|+.|..+|++||..+|.+..|||.+
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            3345678889999999999999999999999999998 777888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|.+.++++.|.-.|++|++++|.+.
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccch
Confidence            8888888888888888888888887653

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.27  E-value=1.3e-11  Score=110.66  Aligned_cols=98  Identities=18%  Similarity=0.018  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeE-----EEeeee------ccccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFIL-----LAVIFM------FQIPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~ni-----v~~~~~------~~~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ....+.+|+.++..+.|+++     +.+...      ...+||||++| ..+..+... .+++..    .+.+++.+|.+
T Consensus        83 ~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~-~~l~~~----~~~~i~~~l~~  157 (239)
T PRK01723         83 ERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQE-APLSEE----QWQAIGQLIAR  157 (239)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhc-CCCCHH----HHHHHHHHHHH
Confidence            45678899999999998763     222211      01369999996 333333322 345554    35789999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCcccc
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNS  119 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~  119 (401)
                      ||+. ||+||||||.|||++.++.++|+|||.+...
T Consensus       158 lH~~-GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        158 FHDA-GVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             HHHC-CCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            9999 9999999999999999999999999987664

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.26  E-value=9.3e-12  Score=109.72  Aligned_cols=97  Identities=11%  Similarity=-0.011  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-----eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-----FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-----~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.++..+.|+++....     .....+||||++|..+..+....   .+ .+..++.+++.+|.++|+. |+
T Consensus        42 ~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~---~~-~~~~i~~~i~~~l~~lH~~-~i  116 (211)
T PRK14879         42 RRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSN---GM-EELELSREIGRLVGKLHSA-GI  116 (211)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhc---cH-HHHHHHHHHHHHHHHHHhC-Cc
Confidence            346789999999999988643222     11124599999975444333222   12 7889999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      +|||++|.|||++ ++.++|+|||.+..
T Consensus       117 ~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        117 IHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             ccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            9999999999999 78899999998755

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=2.5e-11  Score=113.21  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=99.6

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+.-.|.-+|-.|++.+|-+.|+++|.++|. +...|..||.+|....+-++-.+++++|..+||+++..||.+|+.
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence            3778888999999999999999999999999999 887899999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++.+++|++|+.+|++|+.++|.++
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhh
Confidence            9999999999999999999999764

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.26  E-value=9e-12  Score=125.11  Aligned_cols=95  Identities=14%  Similarity=0.024  Sum_probs=75.8

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEee--ee---ccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVI--FM---FQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~--~~---~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+.|.+|+.++..++|+++....  ..   ...+||||++|+.+..+..        ....++.+++.+|.+||+. |
T Consensus       378 ~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~--------~~~~~~~~i~~~L~~lH~~-g  448 (535)
T PRK09605        378 LRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE--------GNPELVRKVGEIVAKLHKA-G  448 (535)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH--------HHHHHHHHHHHHHHHHHhC-C
Confidence            3456799999999999999865433  11   2245999999764443321        4578999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCcccc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNS  119 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~  119 (401)
                      ++||||||+|||+ +++.++|+|||+++..
T Consensus       449 iiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        449 IVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             CccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            9999999999999 6789999999998664

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.25  E-value=1.2e-10  Score=98.90  Aligned_cols=106  Identities=15%  Similarity=0.085  Sum_probs=91.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ....+..+...|..+...|+|++|+..|.+++.+.|+.  .+.+|+++|.++..+|++++|+..+++|++++|.+..++.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            44567788999999999999999999999999987652  2458999999999999999999999999999999999999


Q ss_pred             HHHHHHH-------HcCChH-------HHHHHHHHHHccchh
Q 015733          369 LQAAALF-------ALGKEN-------EAQAALREASILENK  396 (401)
Q Consensus       369 ~~g~~~~-------~~~~~~-------~A~~~~~~al~l~~~  396 (401)
                      .+|.++.       .+|+++       +|+..|++++..+|.
T Consensus       111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999       777877       556666667777774

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=8.6e-11  Score=108.99  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=76.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+...|+|++|++.|+++++++|+ +..+|.++|.++...|++++|+++++++++++|+++......
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556778899999999999999999999999999999 999999999999999999999999999998888775211111


Q ss_pred             HHHHHHcCChHHHHHHHHHHH
Q 015733          371 AAALFALGKENEAQAALREAS  391 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al  391 (401)
                       ......+++++|++.|++++
T Consensus       173 -~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        173 -YLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             -HHHHccCCHHHHHHHHHHHH
Confidence             12223455666666665444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.23  E-value=8.6e-11  Score=123.95  Aligned_cols=102  Identities=9%  Similarity=-0.098  Sum_probs=98.0

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..+.+.|++++|+..|.++++++|+ ++.+++++|.++...|++++|+..+++|++++|+++.+++++|.++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            567788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhh
Q 015733          375 FALGKENEAQAALREASILENKK  397 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ..+|++++|+..|++|++++|..
T Consensus       688 ~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        688 QRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999864

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.22  E-value=2.4e-11  Score=106.01  Aligned_cols=93  Identities=15%  Similarity=-0.008  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEE--Eeee---eccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILL--AVIF---MFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv--~~~~---~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++..+.|+++.  .++.   ....+||||++|..+..+......       .++.+++.+|.+||+. |++
T Consensus        41 ~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~-------~~~~~i~~~l~~lH~~-gi~  112 (199)
T TIGR03724        41 RERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND-------ELLREIGRLVGKLHKA-GIV  112 (199)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcHH-------HHHHHHHHHHHHHHHC-Cee
Confidence            46788999999999887532  2221   112569999997644433322111       7899999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      |+|++|.||+++ ++.++++|||++..
T Consensus       113 H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724       113 HGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             cCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            999999999999 88999999998765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK12370 invasion protein regulator; Provisional

Probab=99.21  E-value=1e-10  Score=117.90  Aligned_cols=88  Identities=18%  Similarity=0.153  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 015733          309 KDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALR  388 (401)
Q Consensus       309 ~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  388 (401)
                      +++++|+..+++|++++|+ ++.++..+|.++...|++++|+..+++|++++|+++.+++.+|.++...|++++|+..|+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3466666666666666666 666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHccchhh
Q 015733          389 EASILENKK  397 (401)
Q Consensus       389 ~al~l~~~~  397 (401)
                      +|++++|.+
T Consensus       397 ~Al~l~P~~  405 (553)
T PRK12370        397 ECLKLDPTR  405 (553)
T ss_pred             HHHhcCCCC
Confidence            666666653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=8.4e-11  Score=96.86  Aligned_cols=89  Identities=12%  Similarity=0.041  Sum_probs=83.0

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ...+.....+...|..+.+.|++++|+..|+++++++|+ ++.+++++|.++..+|++++|+..|++|++++|+++..+.
T Consensus        52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~  130 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE  130 (144)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            335567788999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 015733          369 LQAAALFALG  378 (401)
Q Consensus       369 ~~g~~~~~~~  378 (401)
                      .+|.+...++
T Consensus       131 ~~~~~~~~l~  140 (144)
T PRK15359        131 IRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.1e-10  Score=99.86  Aligned_cols=106  Identities=19%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHh--------cCCCC---------CHHHHHhHHHHHHhCCChHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFID--------VGTMV---------SPTAFARRSLSYLMSDMPQEALNDA  353 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--------~~p~~---------~~~~~~~~a~~~~~~~~~~~A~~~~  353 (401)
                      +......+.++|+.+|+.|+|++|...|..||.        ..|..         ...++.|.+.|++..|+|-++++.+
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~  253 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC  253 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence            456677899999999999999999999999983        23431         3458999999999999999999999


Q ss_pred             HHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          354 SQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       354 ~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ...+..+|++.+|||++|.++...=+..+|.++|.++|++||.
T Consensus       254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            9999999999999999999999999999999999999999985

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.18  E-value=2.1e-10  Score=99.64  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH-HHcCC--hHHH
Q 015733          307 RHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL-FALGK--ENEA  383 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A  383 (401)
                      ..++.++++..+.++++.+|+ +..+|.++|.+|..+|++++|+..|++|++++|+++.+++.+|.++ ...|+  +++|
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            367889999999999999999 9999999999999999999999999999999999999999999985 67787  5999


Q ss_pred             HHHHHHHHccchhhhc
Q 015733          384 QAALREASILENKKSA  399 (401)
Q Consensus       384 ~~~~~~al~l~~~~~~  399 (401)
                      .+.|+++++++|++..
T Consensus       130 ~~~l~~al~~dP~~~~  145 (198)
T PRK10370        130 REMIDKALALDANEVT  145 (198)
T ss_pred             HHHHHHHHHhCCCChh
Confidence            9999999999998753

>PLN02789 farnesyltranstransferase

Probab=99.16  E-value=8.5e-10  Score=102.58  Aligned_cols=112  Identities=6%  Similarity=-0.102  Sum_probs=102.1

Q ss_pred             hhccchhhhhhhhhHhHhHHhhcC-ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCCh--HHHHHHHHHhHhhCCC
Q 015733          286 QMWTGQMQETLNSKKKGDVAFRHK-DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMP--QEALNDASQAQVISPV  362 (401)
Q Consensus       286 ~~~t~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~  362 (401)
                      ....-.+.....|..+|..+...| ++++|+..++++++.+|+ +..+|++|+.++.++|+.  ++++..++++++++|+
T Consensus        62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk  140 (320)
T PLN02789         62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK  140 (320)
T ss_pred             HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc
Confidence            444446677788999999999988 689999999999999999 999999999999999874  7899999999999999


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|..+|.++..+|+|++|++.+.++|++|+.+.
T Consensus       141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            999999999999999999999999999999998753

>PRK12370 invasion protein regulator; Provisional

Probab=99.16  E-value=2.4e-10  Score=115.33  Aligned_cols=103  Identities=12%  Similarity=0.030  Sum_probs=92.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+..+..+...|..+...|++++|+..|++|++++|+ ++.+++++|.++...|++++|+..+++|++++|+++.+++.+
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            4556667788899999999999999999999999999 999999999999999999999999999999999998888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccc
Q 015733          371 AAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      +.+++..|++++|++.++++++.+
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhc
Confidence            888888999999999999998775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=1e-10  Score=82.32  Aligned_cols=63  Identities=24%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             hHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          335 RRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       335 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+|..++..|+|++|++.++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666666666666666666666666666666666654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=5.9e-11  Score=114.74  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      -++-..|-.+....+|+.|..+|++||..+|. ...+|+.+|.+|.++++++.|.-.+++|++++|.+.......|.++.
T Consensus       456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~  534 (638)
T KOG1126|consen  456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH  534 (638)
T ss_pred             hhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence            34445566666777777777777777777777 77777777777777777777777777777777777777777777777


Q ss_pred             HcCChHHHHHHHHHHHccchhhh
Q 015733          376 ALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++|+.++|++.|++|+.+||+++
T Consensus       535 ~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  535 QLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             HhhhhhHHHHHHHHHHhcCCCCc
Confidence            77777777777777777777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=6.4e-10  Score=98.49  Aligned_cols=105  Identities=9%  Similarity=0.018  Sum_probs=83.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC--CCChHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVIS--PVWHMAAYL  369 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~  369 (401)
                      +.....+...|..++..|++++|++.|.++++..|. +..+++++|.++...|++++|++.++++++..  +.....++.
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            344566677788888888888888888888888888 77788888888888888888888888888753  456677888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|.++...|++++|.+.|+++++.+|.+
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            8888888888888888888888887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.14  E-value=4.1e-10  Score=92.06  Aligned_cols=101  Identities=6%  Similarity=-0.058  Sum_probs=96.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .+........|-.+++.|++++|...|.-..-++|. ++..+..+|.|+..+|+|++|+..|..|..++++++..+|..|
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            456777888899999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHcc
Q 015733          372 AALFALGKENEAQAALREASIL  393 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l  393 (401)
                      .||..+|+.+.|...|+.+++.
T Consensus       113 qC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhC
Confidence            9999999999999999999873

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=3.3e-10  Score=101.62  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH---HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH---
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP---TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM---  365 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---  365 (401)
                      ...+..+...|..+++.|+|++|+..|+++++.+|+ ++   .+++.+|.++...|++++|+..++++++.+|+++.   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            345667899999999999999999999999999998 65   58899999999999999999999999999999887   


Q ss_pred             HHHHHHHHHHHc--------CChHHHHHHHHHHHccchhhh
Q 015733          366 AAYLQAAALFAL--------GKENEAQAALREASILENKKS  398 (401)
Q Consensus       366 ~~~~~g~~~~~~--------~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +++.+|.+++..        |++++|++.|+++++.+|++.
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            799999999987        899999999999999998753

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.14  E-value=6.6e-11  Score=106.19  Aligned_cols=107  Identities=23%  Similarity=0.281  Sum_probs=101.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....+.+.+-++...+..|+++.||+.|+.||+++|. .+.+|.+||.++++++....|+++|..|++++|+.++.|-.+
T Consensus       110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr  188 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR  188 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence            4567778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+...+|++.+|..+|+.|.++|-++.
T Consensus       189 g~A~rllg~~e~aa~dl~~a~kld~dE~  216 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACKLDYDEA  216 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHhccccHH
Confidence            9999999999999999999999986544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.13  E-value=2e-10  Score=80.87  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             HhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh
Q 015733          300 KKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       300 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      .+|..+++.|+|++|++.|+++++.+|+ +..+++.+|.++..+|++++|+..++++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999 999999999999999999999999999999999985

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.12  E-value=1.3e-10  Score=96.01  Aligned_cols=98  Identities=11%  Similarity=-0.053  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHhhhCCC--eEEEeeeec-----cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC--
Q 015733           17 STYFIVSLVLIASMSSF--ILLAVIFMF-----QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK--   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~--niv~~~~~~-----~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--   87 (401)
                      ...|..|+..+..++|.  .+..++...     ...+|||++|.....+       +......++.+++.++.++|..  
T Consensus        35 ~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~-------~~~~~~~~~~~~~~~l~~lh~~~~  107 (155)
T cd05120          35 GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEV-------SEEEKEDIAEQLAELLAKLHQLPL  107 (155)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecccC-------CHHHHHHHHHHHHHHHHHHhCCCc
Confidence            35799999999999774  555544222     2449999987644332       6667788899999999999985  


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD  121 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~  121 (401)
                      .+++|+|++|.||+++..+.++++|||.+.....
T Consensus       108 ~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~~  141 (155)
T cd05120         108 LVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPP  141 (155)
T ss_pred             eEEEecCCCcceEEEECCcEEEEEecccccCCCh
Confidence            2699999999999999989999999998765443

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=4.6e-10  Score=104.31  Aligned_cols=105  Identities=18%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .++....|--.|..+++.++...|++.|+.|++++|. +..+|+.+|.+|.-++.+.=|+-++++|+++.|+++..|-.+
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence            3445666777789999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchh
Q 015733          371 AAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      |.||.++++.++|+++|++|+...-.
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcccc
Confidence            99999999999999999999987643

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=1e-09  Score=95.48  Aligned_cols=104  Identities=14%  Similarity=0.066  Sum_probs=96.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .++..-+..+|..++++|+|.+|+..+.++..++|+ +..+|+.+|.+|.++|++++|-..|.+|+++.|+.+.++.++|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            344445566899999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchh
Q 015733          372 AALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ..|+..|+++.|...+..+....+.
T Consensus       176 ms~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999776553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.11  E-value=9e-10  Score=112.13  Aligned_cols=102  Identities=10%  Similarity=-0.054  Sum_probs=70.1

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|....+.|++++|...++.++++.|+ +..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            34556666666666777777777777777777777 66677777777777777777777777777777777777777777


Q ss_pred             HHHHcCChHHHHHHHHHHHccch
Q 015733          373 ALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      ++.++|+|++|++.|+++++-+|
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p  185 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHP  185 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCC
Confidence            77777777777777777766444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.09  E-value=1.1e-09  Score=111.45  Aligned_cols=106  Identities=11%  Similarity=-0.066  Sum_probs=101.9

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      +-.+.........+..+.+.+++++|+..+++++..+|+ ++.+++++|.++.++|+|++|+..|+++++.+|+++.++.
T Consensus       114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            457788889999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          369 LQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      .+|.++...|+.++|...|++|++...
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999999998764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.8e-09  Score=92.22  Aligned_cols=110  Identities=11%  Similarity=0.013  Sum_probs=101.8

Q ss_pred             ccchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh--CCCChH
Q 015733          288 WTGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI--SPVWHM  365 (401)
Q Consensus       288 ~t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~  365 (401)
                      ...+++....+..++..|.+.|+.+.|-+.|++|+.++|+ +.++++|-|--+...|+|++|...+++|++.  .|.-+.
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~  140 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD  140 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence            3557778888999999999999999999999999999999 9999999999999999999999999999974  567788


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+-++|.|-++.|+++.|.+.|+++|++||+..
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            999999999999999999999999999998653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.07  E-value=1.9e-09  Score=97.33  Aligned_cols=102  Identities=11%  Similarity=-0.026  Sum_probs=91.0

Q ss_pred             hhhhHhHhHH-hhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC---ChHHHH
Q 015733          296 LNSKKKGDVA-FRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPV---WHMAAY  368 (401)
Q Consensus       296 ~~~~~~g~~~-~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  368 (401)
                      ......|..+ ++.|+|++|+..|++.++..|+ .   +.+++.+|.+|+..|+|++|+..|+++++..|+   .+++++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            4445556655 6779999999999999999999 5   579999999999999999999999999998887   578999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|.++..+|++++|++.|+++++..|+..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            999999999999999999999999988643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=1.4e-09  Score=111.79  Aligned_cols=108  Identities=16%  Similarity=0.001  Sum_probs=94.2

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+.....+...|..+.+.|++++|+..|+++++++|+ ++.++.++|.+|.++|++++|++.++++++.+|+++.++..
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            34556677888899999999999999999999999999 88899999999999999999999999999999998888888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++..+|++++|++.|+++++++|++.
T Consensus       358 ~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        358 AAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            89999999999999999999999888653

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=2.3e-10  Score=110.39  Aligned_cols=195  Identities=18%  Similarity=0.193  Sum_probs=142.7

Q ss_pred             HHHHHHHHhhh-CCCeEEEeee--ecc---ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHH----HHHHHhcCCC
Q 015733           20 FIVSLVLIASM-SSFILLAVIF--MFQ---IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAE----ALEYCTSKER   89 (401)
Q Consensus        20 f~~E~~~l~~~-~h~niv~~~~--~~~---~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~----~l~~lH~~~~   89 (401)
                      =++|+....++ .|+|.++..-  ...   ..-+|++.+.+....+.....++....+....+...    ||.++|+. +
T Consensus       164 k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~-~  242 (524)
T KOG0601|consen  164 KLREFLSHHKIDSHENPVRDSPAWEGSGILFIQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSN-N  242 (524)
T ss_pred             ccchhhcccccCccccccccCcccccCCcceeeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCC-c
Confidence            34566655555 5788888552  111   225688887777777766666888888889999988    99999999 9


Q ss_pred             ceeccCCCCCEEECCC-CCeEEecccCccccCCCC----cc-----ccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDGR----SY-----STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        90 ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~~----~~-----~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      ++|-|+||.||+...+ ..+++.|||+........    ..     .|...|++||..+ +-++..+|+|++|.+..+..
T Consensus       243 ~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~  321 (524)
T KOG0601|consen  243 IVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAI  321 (524)
T ss_pred             ccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhH
Confidence            9999999999999999 888999999988766543    11     4567899999987 66789999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ++..++......     .+.++-.-.+..++....+..+...+..+++.+|..|++.+.+..
T Consensus       322 l~~~~~~~g~~~-----~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  322 LGSHLPSVGKNS-----SWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             hhcccccCCCCC-----CccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence            998765432111     111111111222344444566777999999999999999887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=1.9e-09  Score=110.75  Aligned_cols=106  Identities=10%  Similarity=0.078  Sum_probs=95.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHH----HHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRA----SIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMA  366 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~----A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  366 (401)
                      .+.....+...|..+.+.|++++    |+..|+++++++|+ +..++.++|.++...|++++|+..++++++++|+++.+
T Consensus       242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            34456667788999999999986    89999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ++.+|.+|...|++++|++.|+++++.+|.+
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999888764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.02  E-value=1.1e-09  Score=103.22  Aligned_cols=71  Identities=7%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHH---HHHhHHHHHHhCCChHHHHHHHHHhHhhC
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT---AFARRSLSYLMSDMPQEALNDASQAQVIS  360 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~  360 (401)
                      +..+..+..+.+.|..+++.|+|++|+..|++||+++|+ +..   +|+|+|.||..+|++++|++++++|+++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            457788999999999999999999999999999999999 774   49999999999999999999999999983

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.02  E-value=3.6e-09  Score=93.64  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=94.6

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC--CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG--TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      +.....+...|..++..|++++|++.|.++++..  +. ....+.++|.++...|++++|+..++++++.+|++..+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  174 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE  174 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence            3455677888999999999999999999999864  44 56789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          370 QAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +|.++...|++++|+..+++++++.+.
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999998654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-10  Score=114.28  Aligned_cols=152  Identities=20%  Similarity=0.275  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCcc-------------ccccccCCc
Q 015733           68 AMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSY-------------STNLAFTPP  134 (401)
Q Consensus        68 ~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~y~aP  134 (401)
                      +....=+.+++.|+.|+|..+++||++|.|++|.++.++..||+.|+++........+             .-...|.||
T Consensus        99 e~~f~nl~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~ap  178 (700)
T KOG2137|consen   99 EDGFANLGNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAP  178 (700)
T ss_pred             cHhhhhhhcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccc
Confidence            3344445667799999999989999999999999999999999999987765442211             113579999


Q ss_pred             cccccCccCCCCcchhhHHHHHHHHhCCCC-CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          135 EYLRTGRVTPESVMYSFGTLLLDLLSGKHI-PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       135 E~~~~~~~~~~~Dv~slG~~l~el~tg~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      |++.+...++++|+||+||++|.+..|+.+ +......... .......+.. ..-++..++.++++=+.+++..++..|
T Consensus       179 E~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~-~~~~~~~~~~-~~~~s~~~p~el~~~l~k~l~~~~~~r  256 (700)
T KOG2137|consen  179 EYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSY-SFSRNLLNAG-AFGYSNNLPSELRESLKKLLNGDSAVR  256 (700)
T ss_pred             hhhccccccccccceeeeeEEEEEecCCcchhhccCCcchh-hhhhcccccc-cccccccCcHHHHHHHHHHhcCCcccC
Confidence            999988889999999999999999955544 2211100000 0011111111 112346678889999999999999999


Q ss_pred             CCHHHHHH
Q 015733          214 PNPRSLVT  221 (401)
Q Consensus       214 ps~~~vl~  221 (401)
                      |++..+..
T Consensus       257 p~~~~l~~  264 (700)
T KOG2137|consen  257 PTLDLLLS  264 (700)
T ss_pred             cchhhhhc
Confidence            97766544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.00  E-value=3e-09  Score=112.45  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=85.6

Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHH
Q 015733          304 VAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEA  383 (401)
Q Consensus       304 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  383 (401)
                      .....|++++|+..|.++++++|+  ..+|+++|.++.++|++++|+..+++|++++|+++.+++++|.++...|++++|
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            334459999999999999999996  779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccchhhh
Q 015733          384 QAALREASILENKKS  398 (401)
Q Consensus       384 ~~~~~~al~l~~~~~  398 (401)
                      ++.|++|++++|.+.
T Consensus       663 i~~l~~AL~l~P~~~  677 (987)
T PRK09782        663 REMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHhCCCCH
Confidence            999999999998754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.2e-09  Score=93.99  Aligned_cols=108  Identities=18%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC---CChHHHHHHHHHhHhhCCCChHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS---DMPQEALNDASQAQVISPVWHMA  366 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~  366 (401)
                      +.+++++.|...|..|+..|++..|+..|.+|+++.|+ +++.+...|.+++..   .+-.+|...+++|+++||++..+
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            35678889999999999999999999999999999999 999999999997654   44567888999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+.+|..+++.|+|++|+..++.-++..|.+.
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999987654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.3e-09  Score=103.77  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=96.2

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC------CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV------SPTAFARRSLSYLMSDMPQEALNDASQAQVISPV  362 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  362 (401)
                      .-.+.+.--+.+.|-..|..+.|.+|+.+|.++++--+..      -...++|+|.+|.+++.|++||..+++||.+.|.
T Consensus       408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            3355566677888889999999999999999998432221      2346999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++..|-..|.+|..+|+.+.|++.|.+||-++|.++
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            999999999999999999999999999999999874

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.98  E-value=2.7e-09  Score=91.73  Aligned_cols=96  Identities=6%  Similarity=-0.020  Sum_probs=68.9

Q ss_pred             HHHHHHhhhCC-----CeEEEeeeeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCceeccC
Q 015733           22 VSLVLIASMSS-----FILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC-TSKERALYHDL   95 (401)
Q Consensus        22 ~E~~~l~~~~h-----~niv~~~~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l-H~~~~ivH~dl   95 (401)
                      +|+..|.++..     |.++.+  ....+||||+.++....-.-....++.+....+..+++.+|..| |.. |+||+||
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~--~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~-glVHGDL  151 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVL--KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKEC-NLVHADL  151 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEe--cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhC-CeecCCC
Confidence            67777777653     344432  33456999998642111111223456666778889999999999 788 9999999


Q ss_pred             CCCCEEECCCCCeEEecccCccccCC
Q 015733           96 NAYRIVFDDDVNPRLSCFGLMKNSRD  121 (401)
Q Consensus        96 k~~Nill~~~~~~kl~Dfg~~~~~~~  121 (401)
                      ++.|||++ ++.+.|+|||.+.....
T Consensus       152 s~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         152 SEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CHHHEEEE-CCcEEEEECCCceeCCC
Confidence            99999997 46799999999877643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=2.4e-09  Score=95.00  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=105.0

Q ss_pred             hHHHHHHHhhcCCCCccchhhhhhhhccc----hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHH
Q 015733          262 TAIHEILEKLGYKDDEGAATELSFQMWTG----QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRS  337 (401)
Q Consensus       262 ~~i~e~l~~~g~~~~~~~~~~~~~~~~t~----~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a  337 (401)
                      ...++-|+..|-+.-......-....|+.    .+.++..+.+++.+|.+.|.|+.|++....||.+||. ...+|..+|
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG  156 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHH
Confidence            34566676666544333323333333333    5568899999999999999999999999999999999 999999999


Q ss_pred             HHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChH---HHHHHHHHHHccc
Q 015733          338 LSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKEN---EAQAALREASILE  394 (401)
Q Consensus       338 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~---~A~~~~~~al~l~  394 (401)
                      .+|+.+|+|++|++.|++||+++|+|....-++..+-..+++..   .+...++-+..+.
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig  216 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG  216 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence            99999999999999999999999999999999999988888776   5555555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-13
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		3e-09
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-09
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-08
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-08
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-06
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-06
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-06
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		3e-06
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-06
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		4e-06
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		4e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		5e-06
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		5e-06
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		5e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		6e-06
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		6e-06
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		6e-06
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		6e-06
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		6e-06
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		6e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		6e-06
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		7e-06
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		9e-06
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		3e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		3e-05
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		3e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		3e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		4e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		5e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		5e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		7e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-05
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		1e-04
4fvr_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain M		1e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-04
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		1e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		1e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		2e-04
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		2e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		2e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		2e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		2e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		2e-04
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		2e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		2e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		2e-04
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		3e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		4e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		4e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		4e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		4e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		4e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		4e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		5e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		5e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		5e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		5e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		5e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		5e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		5e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		6e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		7e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		7e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		7e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		7e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		7e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		7e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		7e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		7e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		8e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64  PMKWAMRLRVALHIAEALEY----CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-- 117
           P+ W  R R+AL  A  L Y    C  K   ++ D+ A  I+ D++    +  FGL K  
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLDEEFEAVVGDFGLAKLM 184
Query: 118 NSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL---- 170
           + +D     +    +    PEYL TG+ + ++ ++ +G +LL+L++G+       L    
Sbjct: 185 DYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD 244
Query: 171 ---------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
                     L++++ ++ L D  L+G +  +E  +L+++A  C Q  P ERP    +V 
Sbjct: 245 DVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVR 304
Query: 222 AL 223
            L
Sbjct: 305 ML 306

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 64  PMKWAMRLRVALHIAEALEY----CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-- 117
           P+ W  R R+AL  A  L Y    C  K   ++ D+ A  I+ D++    +  FGL K  
Sbjct: 135 PLDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLDEEFEAVVGDFGLAKLM 192
Query: 118 NSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHAL---- 170
           + +D     +    +    PEYL TG+ + ++ ++ +G +LL+L++G+       L    
Sbjct: 193 DYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD 252
Query: 171 ---------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
                     L++++ ++ L D  L+G +  +E  +L+++A  C Q  P ERP    +V 
Sbjct: 253 DVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVR 312
Query: 222 AL 223
            L
Sbjct: 313 ML 314

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           T  M W  RL + +  A  L Y  +  RA+ H D+ +  I+ D++  P+++ FG+ K   
Sbjct: 133 TMSMSWEQRLEICIGAARGLHYLHT--RAIIHRDVKSINILLDENFVPKITDFGISKKGT 190
Query: 121 D-GRSY-----STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK 162
           + G+++        L +  PEY   GR+T +S +YSFG +L ++L  +
Sbjct: 191 ELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 39/184 (21%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
           T P+ W MR ++A   A  + +   +   ++ D+ +  I+ D+    ++S FGL + S  
Sbjct: 127 TPPLSWHMRCKIAQGAANGINFL-HENHHIHRDIKSANILLDEAFTAKISDFGLARASEK 185
Query: 122 -------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHA 169
                   R   T  A+  PE LR G +TP+S +YSFG +LL++++G     +H  P   
Sbjct: 186 FAQTVMXSRIVGTT-AYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL 243
Query: 170 L--------------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
           L              D I D+ +     + +E  +S         +AS+CL  +  +RP+
Sbjct: 244 LDIKEEIEDEEKTIEDYI-DKKMNDADSTSVEAMYS---------VASQCLHEKKNKRPD 293
Query: 216 PRSL 219
            + +
Sbjct: 294 IKKV 297

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 39/184 (21%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
           T P+ W MR ++A   A  + +   +   ++ D+ +  I+ D+    ++S FGL + S  
Sbjct: 121 TPPLSWHMRCKIAQGAANGINFL-HENHHIHRDIKSANILLDEAFTAKISDFGLARASEK 179
Query: 122 -------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHA 169
                   R   T  A+  PE LR G +TP+S +YSFG +LL++++G     +H  P   
Sbjct: 180 FAQXVMXXRIVGTT-AYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL 237
Query: 170 L--------------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
           L              D I D+ +     + +E  +S         +AS+CL  +  +RP+
Sbjct: 238 LDIKEEIEDEEKTIEDYI-DKKMNDADSTSVEAMYS---------VASQCLHEKKNKRPD 287
Query: 216 PRSL 219
            + +
Sbjct: 288 IKKV 291

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 39/184 (21%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
           T P+ W MR ++A   A  + +   +   ++ D+ +  I+ D+    ++S FGL + S  
Sbjct: 127 TPPLSWHMRCKIAQGAANGINFL-HENHHIHRDIKSANILLDEAFTAKISDFGLARASEK 185
Query: 122 -------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHA 169
                   R   T  A+  PE LR G +TP+S +YSFG +LL++++G     +H  P   
Sbjct: 186 FAQTVMXXRIVGTT-AYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL 243
Query: 170 L--------------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
           L              D I D+ +     + +E  +S         +AS+CL  +  +RP+
Sbjct: 244 LDIKEEIEDEEKTIEDYI-DKKMNDADSTSVEAMYS---------VASQCLHEKKNKRPD 293
Query: 216 PRSL 219
            + +
Sbjct: 294 IKKV 297

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           T  M W  RL + +  A  L Y  +  RA+ H D+ +  I+ D++  P+++ FG+ K   
Sbjct: 133 TMSMSWEQRLEICIGAARGLHYLHT--RAIIHRDVKSINILLDENFVPKITDFGISKKGT 190
Query: 121 D------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK 162
           +             L +  PEY   GR+T +S +YSFG +L ++L  +
Sbjct: 191 ELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 39/184 (21%)
Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
           T P+ W  R ++A   A  + +   +   ++ D+ +  I+ D+    ++S FGL + S  
Sbjct: 118 TPPLSWHXRCKIAQGAANGINFL-HENHHIHRDIKSANILLDEAFTAKISDFGLARASEK 176
Query: 122 -------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG-----KHIPPSHA 169
                   R   T  A+  PE LR G +TP+S +YSFG +LL++++G     +H  P   
Sbjct: 177 FAQXVXXSRIVGTT-AYXAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL 234
Query: 170 L--------------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
           L              D I D+       + +E  +S         +AS+CL  +  +RP+
Sbjct: 235 LDIKEEIEDEEKTIEDYI-DKKXNDADSTSVEAXYS---------VASQCLHEKKNKRPD 284
Query: 216 PRSL 219
            + +
Sbjct: 285 IKKV 288

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 66  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 125
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 126 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXX 183
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 184 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 243
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P+ RP        +V L KD   PS
Sbjct: 244 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPKMRPT----FLEIVNLLKDDLHPS 290

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 69  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 128
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 129 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXX 186
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 187 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 246
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P+ RP        +V L KD   PS
Sbjct: 247 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPKMRPT----FLEIVNLLKDDLHPS 293

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A  +EY  ++++ ++ DL A   + D+    +++ FGL ++  D   YS       
Sbjct: 130 GLQVARGMEYL-AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSC 185
              + +T  E L+T R T +S ++SFG LL +LL+ +  PP   +D     +        
Sbjct: 189 RLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT-RGAPPYRHIDPFDLTHFLAQGRRL 247
Query: 186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
            + ++  D    L ++  +C + +P  RP  R LV
Sbjct: 248 PQPEYCPD---SLYQVMQQCWEADPAVRPTFRVLV 279

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 68  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 127
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 128 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYY 185
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 186 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 245
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P+ RP        +V L KD   PS
Sbjct: 246 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPKMRPT----FLEIVNLLKDDLHPS 292

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 69  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 128
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 129 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYY 186
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 187 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 246
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P+ RP        +V L KD   PS
Sbjct: 247 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPKMRPT----FLEIVNLLKDDLHPS 293

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 69  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 128
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 129 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYY 186
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 187 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 246
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P+ RP        +V L KD   PS
Sbjct: 247 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPKMRPT----FLEIVNLLKDDLHPS 293

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 69  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 128
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ DL A   +   D   ++  FG+ ++       
Sbjct: 129 LQEM-IQMAAEIADGMAYLNAK-KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXX 186
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 187 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 246
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P  RP        +V L KD   PS
Sbjct: 247 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPNMRPT----FLEIVNLLKDDLHPS 293

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 120 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 177
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 178 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 235
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 236 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 263

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 112 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREG 169
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 170 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 227
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 228 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 255

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 118 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 175
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 176 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 233
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 234 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 261

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 122 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 179
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 180 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 237
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 238 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 265

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 118 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 175
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 176 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 233
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 234 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 261

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 121 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 178
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 179 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 236
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 237 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 264

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 112 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 169
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 170 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 227
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 228 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 255

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 113 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 170
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 171 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 228
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 229 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 256

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 114 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 171
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 172 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 229
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 230 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 257

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 112 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 169
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 170 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 227
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 228 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 255

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 117 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 174
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 175 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 232
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 233 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 260

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 112 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 169
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 170 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 227
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 228 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 255

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H DL A  I+  D ++ +++ FGL +        +R+G
Sbjct: 107 LDMAAQIAEGMAFI--EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 164
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 165 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 222
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 223 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 250

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 70  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 129
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ +L A   +   D   ++  FG+ ++       
Sbjct: 130 LQEM-IQMAAEIADGMAYLNAK-KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYY 187
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 188 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 247
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P  RP        +V L KD   PS
Sbjct: 248 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPNMRPT----FLEIVNLLKDDLHPS 294

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK-------NSRDG 122
           L +A  IAE + +   +ER   H +L A  I+  D ++ +++ FGL +        +R+G
Sbjct: 108 LDMAAQIAEGMAFI--EERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 165
Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP------PSHALDLIRDR 176
             +   + +T PE +  G  T +S ++SFG LL ++++   IP      P    +L R  
Sbjct: 166 AKFP--IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGY 223
Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            +    D+C E         EL +L   C +  P +RP
Sbjct: 224 RM-VRPDNCPE---------ELYQLMRLCWKERPEDRP 251

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-NL 129
           L+ +L + EA+EY       ++ DL A  ++  +D   ++S FGL K +   +      +
Sbjct: 105 LKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 163
Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
            +T PE LR  + + +S ++SFG LL ++ S   +P
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 28/240 (11%)
Query: 8   NTCPMIRLQSTYFIVSLVLIASMS--SFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPM 65
           N   +++  + + +V L+ + S    + +++ ++    + SY       + N  G   P 
Sbjct: 69  NEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT 128
Query: 66  KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------S 119
              M +++A  IA+ + Y  +K + ++ +L A   +   D   ++  FG+ ++       
Sbjct: 129 LQEM-IQMAAEIADGMAYLNAK-KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYY 186
Query: 120 RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIR 174
           R G      + +  PE L+ G  T  S M+SFG +L ++ S    P         L  + 
Sbjct: 187 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM 246
Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPS 234
           D       D+C E        T+L+R+   C Q+ P  RP        +V L KD   PS
Sbjct: 247 DGGYLDQPDNCPE------RVTDLMRM---CWQFNPNMRPT----FLEIVNLLKDDLHPS 293

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 78  AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN------LAF 131
           A  +EY  SK   ++ DL A   +  +    ++S FG+ +   DG   ++       + +
Sbjct: 223 AAGMEYLESK-CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKW 281
Query: 132 TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS 191
           T PE L  GR + ES ++SFG LL +  S    P  +        N QT       G+  
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL------SNQQTREFVEKGGRLP 335
Query: 192 SDE--GTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
             E     + RL  +C  YEP +RP+  ++   L +++K
Sbjct: 336 CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-NL 129
           L+ +L + EA+EY       ++ DL A  ++  +D   ++S FGL K +   +      +
Sbjct: 120 LKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 178
Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
            +T PE LR  + + +S ++SFG LL ++ S   +P
Sbjct: 179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-NL 129
           L+ +L + EA+EY       ++ DL A  ++  +D   ++S FGL K +   +      +
Sbjct: 292 LKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 350
Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
            +T PE LR  + + +S ++SFG LL ++ S   +P
Sbjct: 351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 386

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 78  AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN------LAF 131
           A  +EY  SK   ++ DL A   +  +    ++S FG+ +   DG   ++       + +
Sbjct: 223 AAGMEYLESK-CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKW 281
Query: 132 TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS 191
           T PE L  GR + ES ++SFG LL +  S    P  +        N QT       G+  
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL------SNQQTREFVEKGGRLP 335
Query: 192 SDE--GTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
             E     + RL  +C  YEP +RP+  ++   L +++K
Sbjct: 336 CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 26/175 (14%)
Query: 52  LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
           L F  +  G  QP+     +  +  IAE + +   +   ++ DL A  I+    +  +++
Sbjct: 97  LDFLKSDEGSKQPL--PKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVSASLVCKIA 153
Query: 112 CFGLMK-------NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI 164
            FGL +        +R+G  +   + +T PE +  G  T +S ++SFG LL+++++   I
Sbjct: 154 DFGLARVIEDNEYTAREGAKFP--IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI 211
Query: 165 P-PSHA-LDLIR--DRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
           P P  +  ++IR  +R  +    ++C E         EL  +  RC +  P ERP
Sbjct: 212 PYPGMSNPEVIRALERGYRMPRPENCPE---------ELYNIMMRCWKNRPEERP 257

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-NL 129
           L+ +L + EA+EY       ++ DL A  ++  +D   ++S FGL K +   +      +
Sbjct: 111 LKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 169
Query: 130 AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
            +T PE LR    + +S ++SFG LL ++ S   +P
Sbjct: 170 KWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVP 205

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 52  LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
           L F  +  G  QP+     +  +  IAE + +   +   ++ DL A  I+    +  +++
Sbjct: 270 LDFLKSDEGSKQPL--PKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVSASLVCKIA 326
Query: 112 CFGLMK-------NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI 164
            FGL +        +R+G  +   + +T PE +  G  T +S ++SFG LL+++++   I
Sbjct: 327 DFGLARVIEDNEYTAREGAKFP--IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI 384
Query: 165 P-PSHA-LDLIR--DRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
           P P  +  ++IR  +R  +    ++C E         EL  +  RC +  P ERP    +
Sbjct: 385 PYPGMSNPEVIRALERGYRMPRPENCPE---------ELYNIMMRCWKNRPEERPTFEYI 435
Query: 220 VTALVTLQKDTE 231
            + L      TE
Sbjct: 436 QSVLDDFYTATE 447

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 135 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGK 193
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 194 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 253
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 254 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 288

>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant V617f (Mg- Atp-Bound Form) Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 129 LAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLE 187
           + + PPE +   + +   +  +SFGT L ++ SG   P S ALD    R +Q   D    
Sbjct: 181 IPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS-ALD--SQRKLQFYED---R 234
Query: 188 GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVP 233
            Q  + +  EL  L + C+ YEP  RP+ R+++  L +L     VP
Sbjct: 235 HQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVP 280

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 52  LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLS 111
           L F  +  G  QP+     +  +  IAE + +   +   ++ DL A  I+    +  +++
Sbjct: 264 LDFLKSDEGSKQPL--PKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVSASLVCKIA 320
Query: 112 CFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PSHA- 169
            FGL   +R G  +   + +T PE +  G  T +S ++SFG LL+++++   IP P  + 
Sbjct: 321 DFGL---ARVGAKFP--IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN 375
Query: 170 LDLIR--DRNIQT-LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL 226
            ++IR  +R  +    ++C E         EL  +  RC +  P ERP    + + L   
Sbjct: 376 PEVIRALERGYRMPRPENCPE---------ELYNIMMRCWKNRPEERPTFEYIQSVLDDF 426
Query: 227 QKDTE 231
              TE
Sbjct: 427 YTATE 431

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 51  CLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFD--DDVN 107
           C    +    +  P+KW+++LR+ L IA  +EY  ++   + H DL +  I     D+  
Sbjct: 105 CGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENA 164
Query: 108 P---RLSCFGLMKNSRDGRS-YSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSG 161
           P   +++ FGL + S    S    N  +  PE +       T ++  YSF  +L  +L+G
Sbjct: 165 PVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224
Query: 162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
           +   P       + + I  + +  L      D    L  +   C   +P++RP+   +V 
Sbjct: 225 EG--PFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK 282
Query: 222 ALVTL 226
            L  L
Sbjct: 283 ELSEL 287

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 129 LAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLE 187
           + + PPE +   + +   +  +SFGT L ++ SG   P S ALD    R +Q   D    
Sbjct: 181 IPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS-ALD--SQRKLQFYED---R 234
Query: 188 GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVP 233
            Q  + +  EL  L + C+ YEP  RP+ R+++  L +L     VP
Sbjct: 235 HQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVP 280

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
           A  I++ ++Y  ++ + ++ DL A  I+  +    ++S FGL ++  +  SY        
Sbjct: 156 AWQISQGMQYL-AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRI 214
Query: 129 -LAFTPPEYLRTGRVTPESVMYSFGTLLLDL--LSGK---HIPPSHALDLIRDRNIQTLT 182
            + +   E L     T +S ++SFG LL ++  L G     IPP    +L++  +     
Sbjct: 215 PVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERP 274
Query: 183 DSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
           D+C E         E+ RL  +C + EP +RP
Sbjct: 275 DNCSE---------EMYRLMLQCWKQEPDKRP 297

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 135 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 193
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 194 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 253
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 254 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 288

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 131 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 189
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 190 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 249
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 250 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 284

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 132 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 190
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 191 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 250
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 251 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 285

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 128 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 186
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 187 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 246
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 247 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 281

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 134 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 193 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 252
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 253 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 287

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 134 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 193 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 252
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 253 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 287

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 141 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 199
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 200 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 259
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 260 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 294

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 141 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 199
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 200 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 259
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 260 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 294

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 126 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGK 184
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 185 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 244
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C       D   EL+R+   C QY P+ RP+   +++++
Sbjct: 245 DKPDNC------PDMLLELMRM---CWQYNPKMRPSFLEIISSI 279

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 60  GETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-- 117
           GE + +K    + +A  +A  + Y   +   ++ DL +  I+  + +  +++ FGL +  
Sbjct: 97  GEGRALKLPNLVDMAAQVAAGMAYI-ERMNYIHRDLRSANILVGNGLICKIADFGLARLI 155
Query: 118 -----NSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PSHALD 171
                 +R G  +   + +T PE    GR T +S ++SFG LL +L++   +P P     
Sbjct: 156 EDNEXTARQGAKFP--IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG---- 209
Query: 172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
            + +R +    +         D    L  L   C + +P ERP
Sbjct: 210 -MNNREVLEQVERGYRMPCPQDCPISLHELMIHCWKKDPEERP 251

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++       R G  
Sbjct: 163 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 221
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 222 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 281
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +  F      EL+R+   C QY P+ RP+   +++++
Sbjct: 282 DKPDNCPDMLF------ELMRM---CWQYNPKMRPSFLEIISSI 316

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 136 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 194
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 195 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 234

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 139 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 237

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 137 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 195
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 196 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 235

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 158 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 216
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 217 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 256

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 139 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 237

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 131 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 189
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 190 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 229

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 157 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 215
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 216 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 255

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 138 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 196
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 197 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 236

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           L +A  I+ A+EY   K+  ++ DL A   +  ++   +++ FGL +    G +++ +  
Sbjct: 112 LYMATQISSAMEYL-EKKNFIHRDLAARNCLVGENHLVKVADFGLSR-LMTGDTFTAHAG 169
Query: 129 ----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +T PE L   + + +S +++FG LL ++ +    P     PS   +L+      
Sbjct: 170 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRM 229
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHV 236
              + C E  +      EL+R    C Q+ P +RP+   +  A  T+ +++ +   V
Sbjct: 230 ERPEGCPEKVY------ELMRA---CWQWNPSDRPSFAEIHQAFETMFQESSISDEV 277

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D    S+   
Sbjct: 108 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGS 166
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
              + ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 167 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 206

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 109 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKF 167
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PS----HALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P P       LD +       
Sbjct: 168 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 225
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
               C E          L  L  +C + EP ERP 
Sbjct: 226 CPPECPES---------LHDLMCQCWRKEPEERPT 251

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 74  ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN----- 128
            L +A+ ++Y  SK + ++ DL A   + D+    +++ FGL ++  D   YS +     
Sbjct: 134 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192
Query: 129 ---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
              + +   E L+T + T +S ++SFG LL +L++ +  PP
Sbjct: 193 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPP 232

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Query: 51  CLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFD--DDVN 107
           C    +    +  P+KW+++LR+ L IA  +EY  ++   + H DL +  I     D+  
Sbjct: 105 CGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENA 164
Query: 108 P---RLSCFGLMKNSRDGRS-YSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSG 161
           P   +++ FG  + S    S    N  +  PE +       T ++  YSF  +L  +L+G
Sbjct: 165 PVCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224
Query: 162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
           +   P       + + I  + +  L      D    L  +   C   +P++RP+   +V 
Sbjct: 225 EG--PFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK 282
Query: 222 ALVTL 226
            L  L
Sbjct: 283 ELSEL 287

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN------SRDGRS 124
           +++A  IA+ + Y  +  + ++ DL A      +D   ++  FG+ ++       R G  
Sbjct: 128 IQMAGEIADGMAYLNAN-KFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGK 186
Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 187 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 246
Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C       D   EL+R+   C QY P+ RP+   +++++
Sbjct: 247 DKPDNC------PDMLLELMRM---CWQYNPKMRPSFLEIISSI 281

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST--- 127
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D    S+   
Sbjct: 123 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGS 181
Query: 128 --NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
              + ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 182 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 221

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 112 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 170
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PS----HALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P P       LD +       
Sbjct: 171 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 228
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
               C E          L  L  +C + EP ERP 
Sbjct: 229 CPPECPES---------LHDLMCQCWRKEPEERPT 254

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 76  HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTP-- 133
            I  A++YC  K R ++ DL A  ++ D D+N +++ FG       G    T     P  
Sbjct: 119 QIVSAVQYCHQK-RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYA 177
Query: 134 -PEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF 190
            PE  +  +   PE  ++S G +L  L+SG     S   D    +N++ L +  L G++
Sbjct: 178 APELFQGKKYDGPEVDVWSLGVILYTLVSG-----SLPFD---GQNLKELRERVLRGKY 228

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D   Y++++ 
Sbjct: 108 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVG 165
Query: 131 ------FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
                 ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 166 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 206

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D   Y++++ 
Sbjct: 107 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVG 164
Query: 131 ------FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
                 ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 165 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 205

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D   Y++++ 
Sbjct: 123 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVG 180
Query: 131 ------FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
                 ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 181 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 221

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 24/154 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 285 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P         LD +       
Sbjct: 344 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 401
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
               C E          L  L  +C + EP ERP
Sbjct: 402 CPPECPES---------LHDLMCQCWRKEPEERP 426

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 24/154 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 285 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P         LD +       
Sbjct: 344 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 401
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
               C E          L  L  +C + EP ERP
Sbjct: 402 CPPECPES---------LHDLMCQCWRKEPEERP 426

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D   Y++++ 
Sbjct: 114 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVG 171
Query: 131 ------FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
                 ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 172 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 212

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGR 123
           L +A  I+ A+EY   K+  ++ DL A   +  ++   +++ FGL +        +  G 
Sbjct: 112 LYMATQISSAMEYL-EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 124 SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNI 178
            +   + +T PE L   + + +S +++FG LL ++ +    P     PS   +L+     
Sbjct: 171 KFP--IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYR 228
Query: 179 QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHV 236
               + C E  +      EL+R    C Q+ P +RP+   +  A  T+ +++ +   V
Sbjct: 229 MERPEGCPEKVY------ELMRA---CWQWNPSDRPSFAEIHQAFETMFQESSISDEV 277

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L +   + EA+EY  SK+  L+ DL A   + +D    ++S FGL +   D   Y++++ 
Sbjct: 103 LEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVG 160
Query: 131 ------FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
                 ++PPE L   + + +S +++FG L+ ++ S   +P
Sbjct: 161 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 201

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 24/154 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 285 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P         LD +       
Sbjct: 344 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 401
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
               C E          L  L  +C + EP ERP
Sbjct: 402 CPPECPES---------LHDLMCQCWRKEPEERP 426

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 73  VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK-------NSRDGRSY 125
           +A  IA  + Y   +   ++ DL A  I+  +++  +++ FGL +        +R G  +
Sbjct: 368 MAAQIASGMAY-VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 426
Query: 126 STNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-PS----HALDLIRDRNIQT 180
              + +T PE    GR T +S ++SFG LL +L +   +P P       LD +       
Sbjct: 427 P--IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 484
Query: 181 LTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
               C E          L  L  +C + EP ERP
Sbjct: 485 CPPECPE---------SLHDLMCQCWRKEPEERP 509

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Query: 51  CLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFD--DDVN 107
           C    +    +  P+KW+++LR+ L IA  +EY  ++   + H DL +  I     D+  
Sbjct: 105 CGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENA 164
Query: 108 P---RLSCFGLMKNSRDGRS-YSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSG 161
           P   +++ F L + S    S    N  +  PE +       T ++  YSF  +L  +L+G
Sbjct: 165 PVCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224
Query: 162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
           +   P       + + I  + +  L      D    L  +   C   +P++RP+   +V 
Sbjct: 225 EG--PFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK 282
Query: 222 ALVTL 226
            L  L
Sbjct: 283 ELSEL 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-27
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	9e-25
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-24
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-12
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-11
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-10
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	8e-09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-09
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	9e-08
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	6e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	8e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-05
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	9e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	9e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-04
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	6e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-04
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  108 bits (273), Expect = 5e-27
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 20/180 (11%)

Query: 64  PMKWAMRLRVALHIAEALEY--CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
           P+ W  R R+AL  A  L Y       + ++ D+ A  I+ D++    +  FGL K    
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY 186

Query: 122 GRSY-STNLAFT----PPEYLRTGRVTPESVMYSFGTLLLDLLSGK-----HIPP----- 166
             ++ +T +  T     PEYL TG+ + ++ ++ +G +LL+L++G+              
Sbjct: 187 KDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV 246

Query: 167 ---SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                   L++++ ++ L D  L+G +  +E  +L+++A  C Q  P ERP    +V  L
Sbjct: 247 MLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  102 bits (256), Expect = 9e-25
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 20/183 (10%)

Query: 59  SGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK 117
              T  M W  RL + +  A  L Y     RA+ H D+ +  I+ D++  P+++ FG+ K
Sbjct: 130 DLPTMSMSWEQRLEICIGAARGLHYL--HTRAIIHRDVKSINILLDENFVPKITDFGISK 187

Query: 118 -NSRDGRSY-STNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK----HIPPS 167
             +   +++ ST +  T     PEY   GR+T +S +YSFG +L ++L  +       P 
Sbjct: 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR 247

Query: 168 H-------ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
                   A++   +  ++ + D  L  +   +   +    A +CL     +RP+   ++
Sbjct: 248 EMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307

Query: 221 TAL 223
             L
Sbjct: 308 WKL 310

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  101 bits (253), Expect = 2e-24
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%)

Query: 62  TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYR------IVFDDDVNPRLSCFGL 115
           T P+ W MR ++A   A  + +       L+ + + +R      I+ D+    ++S FGL
Sbjct: 127 TPPLSWHMRCKIAQGAANGINF-------LHENHHIHRDIKSANILLDEAFTAKISDFGL 179

Query: 116 MK-NSRDGRSY-STNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK-----HI 164
            + + +  ++  ++ +  T     PE L  G +TP+S +YSFG +LL++++G      H 
Sbjct: 180 ARASEKFAQTVMTSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAVDEHR 238

Query: 165 PPSHALD-----LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
            P   LD        ++ I+   D  +     S     +  +AS+CL  +  +RP+ + +
Sbjct: 239 EPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

Query: 220 VTALVTLQ 227
              L  + 
Sbjct: 298 QQLLQEMT 305

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALN 351
           M++    K+KG+ A    +   +++CY++ I +    +   ++ RS +Y      Q+A  
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYE 59

Query: 352 DASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           D  +   + P W      +AAAL  L +  EA+    E    E
Sbjct: 60  DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K +G+ A   K++  +I+ YTQ + +    +P   + R+ +Y  S   ++A  DA  A V
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV 73

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           + P +  A      A F +     A+ A  +    E
Sbjct: 74  VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K KG+  F+  D+  +++ YT+ I          ++ R+  Y      Q AL D  +   
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ 78

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           + P +      +AAAL A+    +A    ++A  L+
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.4 bits (167), Expect = 4e-13
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K++G+  F  + +  +  CY + I    +     +  R+L YL    P++AL D  +A  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
           +      A +        +   +EA A L+ A  L  ++  N 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K + +  F+ KD+  +I+ Y+Q I++    +   +  RSL+YL ++    AL DA++A  
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           +   +    Y +AA+  ALGK   A         ++
Sbjct: 76  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K++G+  F  + +  +  CY + I    +     +  R+L YL    P++AL D  +A  
Sbjct: 13  KEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE 71

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           +      A +        +   +EA A L+ A  L 
Sbjct: 72  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K KG+  F+  D+  ++  Y + +      +   ++ R+         Q AL+D      
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR 75

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           +   +      +AA L A+ + ++AQ A  +A  ++
Sbjct: 76  LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 59  SGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK 117
            G    +  +  ++ AL +A  + +  + E  +    LN+  ++ D+D+  R+S   +  
Sbjct: 102 EGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADV-- 159

Query: 118 NSRDGRSY-STNLAFTP----PEYLRTGRVTPESV---MYSFGTLLLDLLSGK----HIP 165
                 S+ S    + P    PE L+            M+SF  LL +L++ +     + 
Sbjct: 160 ----KFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS 215

Query: 166 PSHALDLIRDRNIQ-TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV 224
                  +    ++ T+                + +L   C+  +P +RP    +V  L 
Sbjct: 216 NMEIGMKVALEGLRPTIPPGISP---------HVSKLMKICMNEDPAKRPKFDMIVPILE 266

Query: 225 TLQK 228
            +Q 
Sbjct: 267 KMQD 270

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT---AFARRSLSYLMSDMPQEALNDASQ 355
           K +G+   + ++F A++  Y + I++    +P     F  R+ +Y        A+ D  +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 356 AQVISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
           A  I P +  A      AL +L K  EA A  ++A  L+
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDV--GTMVSPTAFARRSLSYLMSDMPQEALNDASQA 356
           +K+G+  F+  D+  ++  YTQ + +             R+  +L  +   +A  +AS+A
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91

Query: 357 QVISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
                    A Y ++ AL  LG+ ++A   L+    LE
Sbjct: 92  IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEA 349
           G ++     K + +  F+ KD+  +I+ Y+Q I++    +   +  RSL+YL ++    A
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYA 59

Query: 350 LNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENK 396
           L DA++A  +   +    Y +AA+  ALGK   A         ++  
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           + +G   F   D+  +++ YT+ I          ++ R+ +        EA+ D ++A  
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE 66

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
             P +  A   +A A  A+ +   A   L  A   +
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 38/187 (20%), Positives = 79/187 (42%), Gaps = 19/187 (10%)

Query: 59  SGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK 117
           SG  + +    RL +A  +A+ + Y  ++   + H +L +  ++ D     ++  FGL +
Sbjct: 128 SGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187

Query: 118 NSRDGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK----HIPPSHA 169
                   S + A TP    PE LR      +S +YSFG +L +L + +    ++ P+  
Sbjct: 188 LKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV 247

Query: 170 LDLIRDRNIQ-TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
           +  +  +  +  +  +            ++  +   C   EP +RP+  +++  L  L K
Sbjct: 248 VAAVGFKCKRLEIPRNLNP---------QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298

Query: 229 DTEVPSH 235
               P +
Sbjct: 299 SAVPPPN 305

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALN 351
           M +    K++G+  F+   +R ++ CY Q I      +P  ++ ++++ +      +A+ 
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQ 59

Query: 352 DASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS 398
              Q    +        +++   + L     A  +++   ++E  + 
Sbjct: 60  MCQQGLRYTSTA-EHVAIRSKLQYRLELAQGAVGSVQIP-VVEVDEL 104

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 37/207 (17%)

Query: 63  QPMKWAMRLRVALHIAEALEY--------CTSKERALYH-DLNAYRIVFDDDVNPRLSCF 113
             + W     +A  +A  L Y            + A+ H D+ +  ++  +++   ++ F
Sbjct: 116 NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175

Query: 114 GLMKNSRDGRSYSTNLAFT------PPEYLRTGRVTPESV-----MYSFGTLLLDLLSGK 162
           GL      G+S               PE L               MY+ G +L +L S  
Sbjct: 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRC 235

Query: 163 ----------------HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGT-ELVRLASRC 205
                            I    +L+ +++  +       L   +    G   L      C
Sbjct: 236 TAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEEC 295

Query: 206 LQYEPRERPNPRSLVTALVTLQKDTEV 232
             ++   R +   +   +  +Q+ T +
Sbjct: 296 WDHDAEARLSAGCVGERITQMQRLTNI 322

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFA--RRSLSYLMSDMPQEALNDASQA 356
           K KG+  FR+K +  +I+ Y   +++              S  Y+     ++ +  +++A
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL----KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 357 QVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
             + P +      +A+A   LGK  +A   L   S+  +   A+ 
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 300 KKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI 359
               +     D       + + + + +  + + +  R     +     +A  D  +A+ +
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

Query: 360 SPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
            P         A   +   K ++ +    EA   +  ++   
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEA-KRKFPEAPEV 374

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEAL 350
           +  E    + +   AF   D+ A+I    + ++V           R+  ++    P++A+
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 197

Query: 351 NDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREA 390
           +D   A  +      A Y  +   + LG    + + +RE 
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 290 GQMQETLNS----KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM 345
               +++       + G           ++  +   +D     +  A+ RR+  +L    
Sbjct: 17  NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGK 75

Query: 346 PQEALNDASQAQVISPVWHMAAYLQAA-ALFALGKENEAQAALREA 390
            + AL D ++   +      AA LQ    L   GK +EA+   ++ 
Sbjct: 76  SKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKV 120

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDV---GTMVSPTAFARRSLSYLMSDMP 346
            Q+++     +  +   R   +  +   Y   +         +  +  R    +   + P
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 347 QEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
            EA+   S+   + P    A   +A A       +EA      A    N+     
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA-QEHNENDQQI 365

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 30/185 (16%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGL--MKNSR 120
             +    + +A   A  ++Y  +K   + H DL +  I   +D   ++  FGL   K+  
Sbjct: 116 KFEMKKLIDIARQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173

Query: 121 DGRSYSTNLAFTP----PEYLRTGRVTPESV---MYSFGTLLLDLLSGK-----HIPPSH 168
            G      L+ +     PE +R     P S    +Y+FG +L +L++G+           
Sbjct: 174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ 233

Query: 169 ALDLI----RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV 224
            ++++       ++  +  +C +          + RL + CL+ +  ERP+   ++  + 
Sbjct: 234 IIEMVGRGSLSPDLSKVRSNCPK---------RMKRLMAECLKKKRDERPSFPRILAEIE 284

Query: 225 TLQKD 229
            L ++
Sbjct: 285 ELARE 289

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 25/179 (13%)

Query: 64  PMKWAMRLRVALHIAEALEYC-TSKERALYH-DLNAYRIVFDDD-VNPRLSCFGLMKNSR 120
               A  +   L  ++ + Y  + + +AL H DL    ++        ++  FG    + 
Sbjct: 98  YYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT---AC 154

Query: 121 DGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK------HIPPSHAL 170
           D +++ TN   +     PE       + +  ++S+G +L ++++ +        P    +
Sbjct: 155 DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIM 214

Query: 171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD 229
             + +     L  +  +          +  L +RC   +P +RP+   +V  +  L + 
Sbjct: 215 WAVHNGTRPPLIKNLPK---------PIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRY 264

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 31/183 (16%)

Query: 60  GETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSC-----F 113
            +  P+KW+++LR+ L IA  +EY  ++   + H DL +  I           C     F
Sbjct: 114 DKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADF 173

Query: 114 GLMKNSRDGRSYSTNLAFTP----PEYL--RTGRVTPESVMYSFGTLLLDLLSGK----H 163
           GL   S+      + L        PE +       T ++  YSF  +L  +L+G+     
Sbjct: 174 GL---SQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230

Query: 164 IPPSHA--LDLIRDRNIQ-TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
                   +++IR+  ++ T+ + C            L  +   C   +P++RP+   +V
Sbjct: 231 YSYGKIKFINMIREEGLRPTIPEDCPP---------RLRNVIELCWSGDPKKRPHFSYIV 281

Query: 221 TAL 223
             L
Sbjct: 282 KEL 284

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K+ G+ A++ KDF  +++ Y +  ++    + T    ++  Y       +      +A  
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 359 ISPVWHMA------AYLQ-AAALFALGKENEAQAALREASILENKKSA 399
           +             AY +   + F   K  +A     ++         
Sbjct: 67  VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 31/204 (15%), Positives = 55/204 (26%), Gaps = 33/204 (16%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DL---NAYRIVFDDDVNPRLSCFGLM 116
             + +    RL++ L +   L         L H  L   +   IV D      L+ F  +
Sbjct: 204 THKSLVHHARLQLTLQVIRLLASLHH--YGLVHTYLRPVD---IVLDQRGGVFLTGFEHL 258

Query: 117 KNSRDGRSYSTNLAFTPPEYL----------RTGRVTPESVMYSFGTLLLDLLSGKHIPP 166
                         F PPE                +T     ++ G  +  +       P
Sbjct: 259 VRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD--LP 316

Query: 167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGT--ELVRLASRCLQYEPRERPNPRSLVTALV 224
           +     +             E  F S +     +  L    L+Y   +R  P   +    
Sbjct: 317 NTDDAALGG----------SEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPE 366

Query: 225 TLQKDTEVPSHVLMGIPHGAAALP 248
             Q  TE+ + + +    G     
Sbjct: 367 YEQLRTELSAALPLYQTDGEPTRE 390

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEAL 350
           +  E    + +   AF   D+ A+I    + ++V           R+  ++    P++A+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 174

Query: 351 NDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREA 390
           +D   A  +      A Y  +   + LG    + + +RE 
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT---AFARRSLSYLMSDMPQEALNDASQ 355
            + G           ++  +   +D      P    A+ RR+  +L     + AL D ++
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 356 AQVISPVWHMAAYLQ-AAALFALGKENEAQAALREA 390
              +      AA LQ    L   GK +EA+   ++ 
Sbjct: 63  VIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKV 97

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDV---GTMVSPTAFARRSLSYLMSDMP 346
            Q+++     +  +   R   +  +   Y   +         +  +  R    +   + P
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 347 QEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
            EA+   S+   + P    A   +A A       +EA      A    N+     
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA-QEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/115 (8%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 301 KGDVAFRHKDFRASIECYTQFI--------------DVGTMVSPTAFARRSLSYLMSDMP 346
           +G +  +      + + + + +               +           ++L        
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 347 QEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
             A+    +   +         L+A      G+  +A + L+ A       +  A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKLKSDNTEA 190

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 15/167 (8%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYH-DL---NAYRIVFDDDVNPRLSCFGL-MKN 118
                    +   +        SK   L H      N   +    D    L       K 
Sbjct: 190 DEGILALHILTAQLIRLAANLQSKG--LVHGHFTPDN---LFIMPDGRLMLGDVSALWKV 244

Query: 119 SRDGRSYSTNLAFTPPEYL--RTGRVTPESVMYSFGTLLLDLLSGK---HIPPSHALDLI 173
              G + S  + + P E+L   T   T     +  G  +  +        +         
Sbjct: 245 GTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSW 304

Query: 174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
           +  +++      L     +     +  L  R L ++ R R  P   +
Sbjct: 305 KRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAM 351

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K  G+ A++ KDF  +   Y + I++    + T +  ++  Y       E +    +A  
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70

Query: 359 ISPVWHMA------AYL-QAAALFALGKENEAQAALREASILEN 395
           +             A      A       + A      +     
Sbjct: 71  VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 32/170 (18%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYH-DL---NAYRIVFDDDVNPRLSCFGLMKNS 119
            +    RL++ L +   L         L H  L   +   IV D      L+ F  +   
Sbjct: 202 SLVHHARLQLTLQVIRLLASLHH--YGLVHTYLRPVD---IVLDQRGGVFLTGFEHLVRD 256

Query: 120 RDGRSYSTNLAFTPPEYL-----------RTGRVTPESVMYSFGTLLLDLLSGKHIPPSH 168
                 S +  F PPE             R   +T     ++ G ++  +       P  
Sbjct: 257 GARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD--LP-- 312

Query: 169 ALDLIRDRNIQTLTDSCLEGQFS-SDEGTELVRLASRCLQYEPRERPNPR 217
               I        ++       +       L+      L+Y   +R  P 
Sbjct: 313 ----ITKDAALGGSEWIFRSCKNIPQPVRALLE---GFLRYPKEDRLLPL 355

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 32/184 (17%)

Query: 63  QPMKWAMRLRVALHIAEALEYC-TSKERALYH-DLNAYRIVFDDDVNPRLSC-------- 112
           + +   + +  A+ IA  + Y        + H DL +  I+    V              
Sbjct: 100 KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159

Query: 113 FGLMKNSRD-GRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK----H 163
           FGL   +R+  R+   + A       PE +R    +  S ++S+G LL +LL+G+     
Sbjct: 160 FGL---AREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRG 216

Query: 164 IPPSHALDLIRDRNIQ-TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA 222
           I        +    +   +  +C E            +L   C   +P  RP+  +++  
Sbjct: 217 IDGLAVAYGVAMNKLALPIPSTCPE---------PFAKLMEDCWNPDPHSRPSFTNILDQ 267

Query: 223 LVTL 226
           L T+
Sbjct: 268 LTTI 271

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K +G+  F  K+F  +I+ Y   I++     P  ++  S  Y+ +   ++ +   ++A  
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALE 87

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
           I P    A   +A+A  +LG   +A   L   S+  +   A+ 
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASI 130

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 34/196 (17%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGL--MKNS 119
             +      ++A  I + + Y  +K   + H DL +  + +D+     ++ FGL  +   
Sbjct: 125 IVLDVNKTRQIAQEIVKGMGYLHAK--GILHKDLKSKNVFYDNG-KVVITDFGLFSISGV 181

Query: 120 RDGRSYSTNLAFTP-------PEYLRTGRVTPESVM---------YSFGTLLLDLLSGK- 162
                    L           PE +R      E            ++ GT+  +L + + 
Sbjct: 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREW 241

Query: 163 ---HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                P    +  +       L+            G E+  +   C  +E  ERP    L
Sbjct: 242 PFKTQPAEAIIWQMGTGMKPNLSQI--------GMGKEISDILLFCWAFEQEERPTFTKL 293

Query: 220 VTALVTLQKDTEVPSH 235
           +  L  L K     SH
Sbjct: 294 MDMLEKLPKRNRRLSH 309

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 34/209 (16%)

Query: 77  IAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST---NLAFT 132
           I  A++YC  K   + H DL A  ++ D D+N +++ FG       G           + 
Sbjct: 123 IVSAVQYCHQK--RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYA 180

Query: 133 PPEYLRTGR--VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQF 190
            PE  + G+    PE  ++S G +L  L+SG  +P          +N++ L +  L G++
Sbjct: 181 APELFQ-GKKYDGPEVDVWSLGVILYTLVSG-SLP-------FDGQNLKELRERVLRGKY 231

Query: 191 S--SDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPHGAAALP 248
                  T+   L  R L   P +R           TL+   ++     +    G     
Sbjct: 232 RIPFYMSTDCENLLKRFLVLNPIKRG----------TLE---QIMKDRWINA--GHEEDE 276

Query: 249 LSPLGDACLRMDLTAIHEILEKLGYKDDE 277
           L P  +  L +      +I+  +GY  +E
Sbjct: 277 LKPFVEPELDISDQKRIDIMVGMGYSQEE 305

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K +G+  ++ + F  +IE Y +  ++      T    R+ +       + A++  + A  
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWELHK--DITYLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
                     + + +   +G        L++  I   +KS   
Sbjct: 67  QGREMRADYKVISKSFARIGNAYHKLGDLKKT-IEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 301 KGDVAFRHKDFRASIECYTQFIDVGTMVSPT---AFARRSLSYLMSDMPQEALNDASQAQ 357
           +G   F   D+  +++ YT+ I      +P     ++ R+ +        EA+ D ++A 
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200

Query: 358 VISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKSANA 401
              P +  A   +A A  A+ +   A   L  A    + +  N 
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK-DAEVNNG 243

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 36/193 (18%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGL------- 115
              W+ R+  A  IA  + Y  S    + H DLN++  +  ++ N  ++ FGL       
Sbjct: 104 QYPWSQRVSFAKDIASGMAYLHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161

Query: 116 -------MKNSRDGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHI 164
                      +  R     +   P    PE +       +  ++SFG +L +++   + 
Sbjct: 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNA 221

Query: 165 PP-----SHALDLIRDRNI-QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS 218
            P     +    L     + +    +C               +  RC   +P +RP+   
Sbjct: 222 DPDYLPRTMDFGLNVRGFLDRYCPPNCPP---------SFFPITVRCCDLDPEKRPSFVK 272

Query: 219 LVTALVTLQKDTE 231
           L   L TL+    
Sbjct: 273 LEHWLETLRMHLA 285

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 277 EGAATELSFQMWTGQMQETLNS-KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFAR 335
           +G     +  M  G  ++TL      G   ++   +  + + +     +        F  
Sbjct: 3   DGG----TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLG 57

Query: 336 RSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILEN 395
                    + ++AL   S   ++        +  A     LG  + A++    A  L  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 396 KKSANA 401
            + A+ 
Sbjct: 118 AQPAHE 123

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 46/164 (28%)

Query: 76  HIAEALEYCTSKERALYHDLN-AYR------IVFDDDVNPRLSCFGLMKNSRDGRSYSTN 128
            + E +           H LN  +R      I+ DDD+N +L+ FG       G      
Sbjct: 132 ALLEVICAL--------HKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE- 182

Query: 129 LAFTP----PEYLRTGRV------TPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
           +  TP    PE +             E  M+S G ++  LL+G   PP         R  
Sbjct: 183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG--SPPFW------HRKQ 234

Query: 179 QTLTDSCLEGQFS---------SDEGTELVRLASRCLQYEPRER 213
             +    + G +          SD   +LV    R L  +P++R
Sbjct: 235 MLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS---RFLVVQPQKR 275

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 286 QMWTGQMQETLNS----KKKGDVAFRHKDFRASIECYTQFIDVGTMVSP----------- 330
            ++    +E + S    K++G+  F+  +   +I  Y + +D                  
Sbjct: 25  SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84

Query: 331 ----TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAA 386
               +     +  Y  +    +A++ AS+   I      A Y    A    G   EA+  
Sbjct: 85  NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144

Query: 387 LREASILE 394
           L +A+ L 
Sbjct: 145 LYKAASLN 152

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 77  IAEALEYCTSKERALYH-DLNAYRIVF-----DDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
               L +  S    + H DL  + I+         +   +S FGL K    GR   +  +
Sbjct: 127 TTSGLAHLHSLN--IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184

Query: 131 F---TP----PEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQT 180
               T     PE L        T    ++S G +   ++S    P   +L    +  +  
Sbjct: 185 GVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGA 244

Query: 181 LTDSCLEG-QFSSDEGTELVRLASRCLQYEPRERP 214
            +  CL   +       EL+    + +  +P++RP
Sbjct: 245 CSLDCLHPEKHEDVIARELIE---KMIAMDPQKRP 276

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSP-----------------TAFARRSLSYL 341
           ++KG+  F  KD++ +I+ Y   +     +                     +A  S  YL
Sbjct: 15  RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74

Query: 342 MSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILE 394
                 EA   +S+          A + +A A  A  K +EA+  L+      
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 46/164 (28%)

Query: 76  HIAEALEYCTSKERALYHDLN-AYR------IVFDDDVNPRLSCFGLMKNSRDGRSYSTN 128
            + EA+ +         H  N  +R      I+ DD++  RLS FG   +   G      
Sbjct: 208 SLLEAVSFL--------HANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRE- 258

Query: 129 LAFTP----PEYLRTGRV------TPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
           L  TP    PE L+            E  +++ G +L  LL+G   PP         R  
Sbjct: 259 LCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAG--SPP------FWHRRQ 310

Query: 179 QTLTDSCLEGQFS---------SDEGTELVRLASRCLQYEPRER 213
             +    +EGQ+          S    +L+    R LQ +P  R
Sbjct: 311 ILMLRMIMEGQYQFSSPEWDDRSSTVKDLIS---RLLQVDPEAR 351

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 42/161 (26%)

Query: 77  IAEALEYCTSKERALYHDLN-AYR------IVF---DDDVNPRLSCFGLMKNSRDGRSYS 126
           I EA+ Y         H+    +R      +++     D   +++ FGL K         
Sbjct: 157 ILEAVAYL--------HENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMK 208

Query: 127 TNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLT 182
           T +  TP    PE LR     PE  M+S G +   LL G    P +      +R  Q + 
Sbjct: 209 T-VCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCG--FEPFYD-----ERGDQFMF 260

Query: 183 DSCLEGQFS---------SDEGTELVRLASRCLQYEPRERP 214
              L  ++          S    +LVR   + +  +P++R 
Sbjct: 261 RRILNCEYYFISPWWDEVSLNAKDLVR---KLIVLDPKKRL 298

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 16/156 (10%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLA 130
           L   + I  AL++   + + L+ D+ +  I    D   +L  FG+ +        +    
Sbjct: 128 LDWFVQICLALKHVHDR-KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACI 186

Query: 131 FTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCL 186
            TP    PE         +S +++ G +L +L + K      A       +++ L    +
Sbjct: 187 GTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK--HAFEA------GSMKNLVLKII 238

Query: 187 EGQF---SSDEGTELVRLASRCLQYEPRERPNPRSL 219
            G F   S     +L  L S+  +  PR+RP+  S+
Sbjct: 239 SGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSI 274

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 47/229 (20%)

Query: 61  ETQPMKWAMRLRVALHIAEALEY-------CTSKERALYH-DLNAYRIVFDDDVNPRLSC 112
                 W    R+A  +   L Y           + A+ H DLN+  ++  +D    +S 
Sbjct: 104 SLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD 163

Query: 113 FGL--------MKNSRDGRSYSTNLAFTP----PEYLR-------TGRVTPESVMYSFGT 153
           FGL        +    +  + + +   T     PE L              +  MY+ G 
Sbjct: 164 FGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGL 223

Query: 154 LLLDLLSGK------HIPPSHAL----DLIRDRNIQTLTDS-CLEGQ-------FSSDEG 195
           +  ++             P + +    ++      + +      E Q       +  +  
Sbjct: 224 IYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSL 283

Query: 196 T--ELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLMGIPH 242
               L      C   +   R   +     +  L    E    V     H
Sbjct: 284 AVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSVSPTAHH 332

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 71  LRVALHIAEALEYCTSKERALYH----DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYS 126
           LRV   +  AL+ C  +    +     DL    +  D   N +L  FGL +      S++
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA 173

Query: 127 TNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLT 182
                TP    PE +       +S ++S G LL +L +    PP  A       + + L 
Sbjct: 174 KTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM--PPFTA------FSQKELA 225

Query: 183 DSCLEGQF---SSDEGTELVRLASRCLQYEPRERPNPRSL 219
               EG+F         EL  + +R L  +   RP+   +
Sbjct: 226 GKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 265

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 71  LRVALHIAEALEYCTSKERALYHDL---NAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST 127
           L + + IAEA+E+  SK   ++ DL   N   I F  D   ++  FGL+          T
Sbjct: 167 LHIFIQIAEAVEFLHSK-GLMHRDLKPSN---IFFTMDDVVKVGDFGLVTAMDQDEEEQT 222

Query: 128 NLAFTPPEYLRTGRV-TP---------------ESVMYSFGTLLLDLLSGKHIPPSHALD 171
            L   P     TG+V T                +  ++S G +L +LL            
Sbjct: 223 VLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSF--STQMER- 279

Query: 172 LIRDRNIQTLTDSCLEGQF---SSDEGTELVRLASRCLQYEPRERPNPRSL 219
                 ++ +TD     +F    + +  +   +    L   P ERP    +
Sbjct: 280 ------VRIITDVR-NLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDI 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 57/250 (22%)

Query: 25  VLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQP-MKWAMRLRVALHIAEALEY 83
            +   +     +     F+I       L   N  S ET   M   +  ++  +     ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 84  CTSKERALYHDLNAY--RIVFD----------DDV-NPR------LSCFGLMKNSRDGRS 124
            +S  +   H + A   R++             +V N +      LSC  L+  +R  + 
Sbjct: 220 -SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRF-KQ 276

Query: 125 YSTNLAFTPPEYLRTGRVTPESVMYSFG-----TLLLDLLSGK--HIPPS------HALD 171
            +  L+        T  ++ +    +       +LLL  L  +   +P          L 
Sbjct: 277 VTDFLSAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 172 LI--RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQY-EPRERPNPRSLVTALVTLQK 228
           +I    R+     D      +      +L  +    L   EP E    R +   L     
Sbjct: 332 IIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPP 383

Query: 229 DTEVPSHVLM 238
              +P+ +L 
Sbjct: 384 SAHIPTILLS 393

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 43/161 (26%)

Query: 76  HIAEALEYCTSKERALYHDLN-AYR------IVF---DDDVNPRLSCFGLMKNSRDGRSY 125
            +  AL Y         H  +  ++      I+F         ++  FGL +  +     
Sbjct: 132 QMMNALAYF--------HSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS 183

Query: 126 STNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTL 181
           +     T     PE  +   VT +  ++S G ++  LL+G    P          +++ +
Sbjct: 184 TNAAG-TALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGC--LPFT------GTSLEEV 233

Query: 182 TDSCLEGQFS--------SDEGTELVRLASRCLQYEPRERP 214
                  + +        + +  +L++   + L  +P  RP
Sbjct: 234 QQKATYKEPNYAVECRPLTPQAVDLLK---QMLTKDPERRP 271

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 38/165 (23%)

Query: 77  IAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAF---- 131
           I EAL Y  S+   + H DL    I  D+  N ++  FGL KN           +     
Sbjct: 125 ILEALSYIHSQG--IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPG 182

Query: 132 ----------TP----PEYLR-TGRVTPESVMYSFGTLLLDLLSGKHIPPSHA------L 170
                     T      E L  TG    +  MYS G +  +++     P S        L
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY----PFSTGMERVNIL 238

Query: 171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
             +R  +I+          F  ++     ++    + ++P +RP 
Sbjct: 239 KKLRSVSIE------FPPDFDDNKMKVEKKIIRLLIDHDPNKRPG 277

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 10/134 (7%), Positives = 35/134 (26%), Gaps = 6/134 (4%)

Query: 258 RMDLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNS-KKKGDVAFRHKDFRASIE 316
            +++T    I   +    + GA    + +       + ++         +       +  
Sbjct: 2   SLNITENESISTAVIDAINSGA----TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEV 57

Query: 317 CYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA 376
            +          +       +  Y + +  Q+A +  + A  +    +   +        
Sbjct: 58  FFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116

Query: 377 LGKENEAQAALREA 390
           L    +A+      
Sbjct: 117 LKAPLKAKECFELV 130

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 71  LRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNL 129
           +  A  ++ AL Y  SK     H D+ A  ++   +   +L  FGL +   D   Y  + 
Sbjct: 494 ILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASK 551

Query: 130 A-----FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
                 +  PE +   R T  S ++ FG  + ++L     P      +  +  I +    
Sbjct: 552 GKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL 611

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV 232
            +  +C            L  L ++C  Y+P  RP    L   L T+ ++ ++
Sbjct: 612 PMPPNCPP---------TLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKL 655

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 23/179 (12%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMKNSRD 121
             ++    L++    A  +EY  SK     H DL A   +  +    ++S FG+ +   D
Sbjct: 208 ARLRVKTLLQMVGDAAAGMEYLESKC--CIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265

Query: 122 GRSYSTNLAF------TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHAL 170
           G   ++          T PE L  GR + ES ++SFG LL +  S    P          
Sbjct: 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTR 325

Query: 171 DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD 229
           + +         + C +          + RL  +C  YEP +RP+  ++   L +++K 
Sbjct: 326 EFVEKGGRLPCPELCPD---------AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK--------NSRDG 122
                    AL +  S+   ++ D+    I        +L  FGL+           ++G
Sbjct: 160 WGYLRDTLLALAHLHSQ-GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEG 218

Query: 123 RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLT 182
                   +  PE L+       + ++S G  +L++       P            Q L 
Sbjct: 219 DPR-----YMAPELLQGSY-GTAADVFSLGLTILEVACNME-LPHGG------EGWQQLR 265

Query: 183 DSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
              L  +F++   +EL  +    L+ +P+ R 
Sbjct: 266 QGYLPPEFTAGLSSELRSVLVMMLEPDPKLRA 297

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 68/208 (32%)

Query: 55  SNNFSGETQPMKWAMRLRVALH-IAEALEYCTSKERALYHDLN----------------- 96
           S N S E   ++        L  IA  + +         H L                  
Sbjct: 101 SKNVSDENLKLQKEYNPISLLRQIASGVAHL--------HSLKIIHRDLKPQNILVSTSS 152

Query: 97  ---AYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTP--------PEYLR------- 138
              A +    +++   +S FGL K    G+S        P        PE L        
Sbjct: 153 RFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQT 212

Query: 139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS------- 191
             R+T    ++S G +   +LS    P        R+ NI       + G FS       
Sbjct: 213 KRRLTRSIDIFSMGCVFYYILSKGKHPFGD--KYSRESNI-------IRGIFSLDEMKCL 263

Query: 192 -----SDEGTELVRLASRCLQYEPRERP 214
                  E T+L+    + + ++P +RP
Sbjct: 264 HDRSLIAEATDLIS---QMIDHDPLKRP 288

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 22/184 (11%)

Query: 59  SGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK 117
               + ++    + +A  IA  + Y         H DL A  I+  +++  +++ FGL +
Sbjct: 354 GETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLAR 411

Query: 118 NSRDGRSYSTNLA-----FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PS 167
              D    +   A     +T PE    GR T +S ++SFG LL +L +   +P       
Sbjct: 412 LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR 471

Query: 168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ 227
             LD +           C E          L  L  +C + EP ERP    L   L    
Sbjct: 472 EVLDQVERGYRMPCPPECPE---------SLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522

Query: 228 KDTE 231
             TE
Sbjct: 523 TSTE 526

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 44/166 (26%)

Query: 72  RVALHIAEALEYCTSKERALYHDLN-AYR------IVF---DDDVNPRLSCFGLMKNSRD 121
           R+   +   + Y         H  N  +R      I+    + D + ++  FGL    + 
Sbjct: 125 RIIKQVFSGITYM--------HKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

Query: 122 GRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN 177
                     T     PE LR G    +  ++S G +L  LLSG   PP +       +N
Sbjct: 177 NTKMKD-RIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSGT--PPFYG------KN 226

Query: 178 IQTLTDSCLEGQFS---------SDEGTELVRLASRCLQYEPRERP 214
              +      G+++         SD+  +L+R   + L + P  R 
Sbjct: 227 EYDILKRVETGKYAFDLPQWRTISDDAKDLIR---KMLTFHPSLRI 269

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 22/184 (11%)

Query: 59  SGETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDDDVNPRLSCFGLMK 117
               + ++    + +A  IA  + Y         H DL A  I+  +++  +++ FGL +
Sbjct: 271 GETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLAR 328

Query: 118 NSRDGRSYSTNLA-----FTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PS 167
              D    +   A     +T PE    GR T +S ++SFG LL +L +   +P       
Sbjct: 329 LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR 388

Query: 168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ 227
             LD +           C E          L  L  +C + EP ERP    L   L    
Sbjct: 389 EVLDQVERGYRMPCPPECPE---------SLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439

Query: 228 KDTE 231
             TE
Sbjct: 440 TSTE 443

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 42/159 (26%)

Query: 77  IAEALEYCTSKERALYHDLN-AYR------IVFDDDVNPRLSC--FGLMKNSRDGRSYST 127
           + + L +         H+ N  +       I+F    +  L    FGL  +    +S   
Sbjct: 264 VCKGLCHM--------HENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKV 315

Query: 128 NLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTD 183
               T     PE      V   + M+S G L   LLSG  + P          N      
Sbjct: 316 TTG-TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG--LSP------FGGENDDETLR 366

Query: 184 SCLEGQFS---------SDEGTELVRLASRCLQYEPRER 213
           +     ++         S++G + +R   + L  +P  R
Sbjct: 367 NVKSCDWNMDDSAFSGISEDGKDFIR---KLLLADPNTR 402

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.98
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.98
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.98
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.98
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.7
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.37
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.36
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.34
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.34
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.33
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.33
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.31
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.3
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.28
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.27
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.25
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.22
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.22
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.17
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.16
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.1
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.07
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.03
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.03
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.02
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.02
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.01
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.01
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.01
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.98
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.98
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.97
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.96
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.92
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.91
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.91
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.89
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.85
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.85
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.85
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.83
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.72
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.69
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.46
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.44
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.43
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.37
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.36
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.36
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.32
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.26
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.22
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.12
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.99
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.98
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.95
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.84
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.82
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.8
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.68
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.63
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.6
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.59
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.36
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.19
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.11
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.78
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.62
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.4
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.74
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.65
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.5
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.14
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.97
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.77

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5e-49  Score=404.81  Aligned_cols=359  Identities=16%  Similarity=0.109  Sum_probs=224.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....|.+|+.++.+++||||++++..+.          .+||||++|+.+..+...  ++++..++.++.||+.||.|||
T Consensus       122 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~--~l~~~~~~~~~~qi~~aL~~lH  199 (681)
T 2pzi_A          122 AQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ--KLPVAEAIAYLLEILPALSYLH  199 (681)
T ss_dssp             HHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999884332          469999997655544433  7999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ++ |||||||||+|||++.+ .+||+|||+++.........||+.|+|||++.++. +.++|||||||++|+|++|..|+
T Consensus       200 ~~-giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~  276 (681)
T 2pzi_A          200 SI-GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTR  276 (681)
T ss_dssp             HT-TEECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             HC-CCeecccChHHeEEeCC-cEEEEecccchhcccCCccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCC
Confidence            99 99999999999999985 89999999999887777778999999999987654 88999999999999999998775


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHccccCC-----CCCCccccC
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-PRSLVTALVTLQKDT-----EVPSHVLMG  239 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-~~~vl~~l~~~~~~~-----~~~~~~~~~  239 (401)
                      ....        ...+.    ........+..+.+||.+||+.||.+||+ ++++...|..+....     ..+......
T Consensus       277 ~~~~--------~~~~~----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  344 (681)
T 2pzi_A          277 NGRY--------VDGLP----EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDTGVPRPGLST  344 (681)
T ss_dssp             TTEE--------CSSCC----TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHHHHHHHHSCCCCCCCS
T ss_pred             cccc--------ccccc----ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHHhhccccCCCCCcccc
Confidence            4321        01100    00111234578999999999999999996 555556555442210     111100000


Q ss_pred             CCCCCCCCCCCCCCChhhh---------------hhhhHHHHHH-------------HhhcCCCCccchhhhhh-hhc--
Q 015733          240 IPHGAAALPLSPLGDACLR---------------MDLTAIHEIL-------------EKLGYKDDEGAATELSF-QMW--  288 (401)
Q Consensus       240 ~~~~~~~~~~~p~~~~~~~---------------~~~~~i~e~l-------------~~~g~~~~~~~~~~~~~-~~~--  288 (401)
                      ...    +..+..+.....               .+...+...+             -..+....+.....-.+ ...  
T Consensus       345 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~p~~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~  420 (681)
T 2pzi_A          345 IFS----PSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHG  420 (681)
T ss_dssp             SBC----CCSSCCSSSHHHHGGGHHHHCCCCCCCCCHHHHHHHSCCBCCCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC
T ss_pred             cCC----cccccccchhhhhhcccccccccccccCCHHHHHhhCCCccCCCCCcchHHhhcccccCHHHHHHHHHHhhhh
Confidence            000    000000000000               0000000000             00000000000000000 000  


Q ss_pred             ------cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC
Q 015733          289 ------TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV  362 (401)
Q Consensus       289 ------t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  362 (401)
                            ...+..+..+..+|..+++.|+|++|++.|+++++.+|+ +..+|+++|.+|..+|+|++|++.|++|++++|+
T Consensus       421 ~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          421 ALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             -------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                  112333445556666666666666666666666666666 6666666666666666666666666666666666


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ++.+++++|.++..+|++++ ++.|++|++++|.+
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence            66666666666666666666 66666666665543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=360.74  Aligned_cols=213  Identities=15%  Similarity=0.205  Sum_probs=169.5

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+.|.+|+.++++++|||||.+++...    .+|||||+|+ |...+.....+++|..+.+++.||+.||+|||++ +
T Consensus        74 ~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~-~  152 (307)
T 3omv_A           74 EQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK-N  152 (307)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34578999999999999999999984333    3499999965 5555555667899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||||||||+||||++++.+||+|||+|+.....      ...+||+.|||||++.+   ++++.++|||||||++|||+|
T Consensus       153 IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt  232 (307)
T 3omv_A          153 IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT  232 (307)
T ss_dssp             CBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH
Confidence            999999999999999999999999999875421      34579999999999964   468999999999999999999


Q ss_pred             CCCCCCchhhHH-hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDL-IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |+.||.+..... ...........+. ....+..++..+.+||.+||+.||++|||+.+|+..|+.++..
T Consensus       233 g~~Pf~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          233 GELPYSHINNRDQIIFMVGRGYASPD-LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             SSCTTTTCCCHHHHHHHHHTTCCCCC-STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCChHHHHHHHHhcCCCCCC-cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence            999986532111 1111111111111 1235667889999999999999999999999999999888653

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.6e-48  Score=357.62  Aligned_cols=208  Identities=18%  Similarity=0.234  Sum_probs=171.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC------------CCCCCCHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG------------ETQPMKWAMRLRVALHI   77 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~------------~~~~l~~~~~~~i~~qi   77 (401)
                      ..++|.+|+.++++++|||||++++.+.     .+|||||+|+ |...+..            ....|+|.++++++.||
T Consensus        58 ~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  137 (299)
T 4asz_A           58 ARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQI  137 (299)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999995443     3499999965 4444422            23579999999999999


Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhh
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSF  151 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  151 (401)
                      +.||.|||++ +||||||||+|||++.++.+||+|||+++.....      ....||+.|||||++.+..++.++|||||
T Consensus       138 a~gl~yLH~~-~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~  216 (299)
T 4asz_A          138 AAGMVYLASQ-HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSL  216 (299)
T ss_dssp             HHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHhC-CcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHH
Confidence            9999999999 9999999999999999999999999999865432      22457999999999999999999999999


Q ss_pred             HHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          152 GTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       152 G~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||++|||+| |+.||.+.......    .. +......+.|..++.++.+||.+||+.||++|||+.+|...|+.+.+.
T Consensus       217 Gvvl~Ellt~G~~Pf~~~~~~~~~----~~-i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          217 GVVLWEIFTYGKQPWYQLSNNEVI----EC-ITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             HHHHHHHHTTTCCTTTTSCHHHHH----HH-HHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHH----HH-HHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            999999999 88888664322111    11 112223456778899999999999999999999999999999887653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=359.05  Aligned_cols=208  Identities=16%  Similarity=0.225  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC--------------CCCCCCHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG--------------ETQPMKWAMRLRVAL   75 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~--------------~~~~l~~~~~~~i~~   75 (401)
                      ..++|.+|+.++++++|||||++++.+.     .+|||||+|+ |..++..              ...+++|.++++++.
T Consensus        86 ~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  165 (329)
T 4aoj_A           86 ARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS  165 (329)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHH
Confidence            4578999999999999999999995443     3499999965 4444322              235799999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      ||+.||.|||++ +||||||||+||||+.++.+||+|||+++.....      ....||+.|||||++.+..++.++|||
T Consensus       166 qia~gl~yLH~~-~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvw  244 (329)
T 4aoj_A          166 QVAAGMVYLAGL-HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVW  244 (329)
T ss_dssp             HHHHHHHHHHHT-TCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhcC-CeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCcccccc
Confidence            999999999999 9999999999999999999999999999865332      234689999999999999999999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||||++|||+| |+.||.+.......    . .+....+.+.|..+++++.+||.+||+.||++|||+.+|++.|+.+.+
T Consensus       245 S~Gvvl~Ellt~G~~Pf~~~~~~~~~----~-~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~  319 (329)
T 4aoj_A          245 SFGVVLWEIFTYGKQPWYQLSNTEAI----D-CITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ  319 (329)
T ss_dssp             HHHHHHHHHHTTSCCTTCSSCHHHHH----H-HHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCCCCCCCCCCHHHHH----H-HHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence            99999999999 88888654322111    1 111223345677889999999999999999999999999999998876


Q ss_pred             C
Q 015733          229 D  229 (401)
Q Consensus       229 ~  229 (401)
                      .
T Consensus       320 ~  320 (329)
T 4aoj_A          320 A  320 (329)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.5e-47  Score=354.98  Aligned_cols=204  Identities=15%  Similarity=0.210  Sum_probs=169.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRVAL   75 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i~~   75 (401)
                      .++|.+|+.++++++|||||++++...     .+|||||++| |...+...               ...++|..+++++.
T Consensus        73 ~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  152 (308)
T 4gt4_A           73 REEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVA  152 (308)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHH
Confidence            578999999999999999999995443     3499999965 44444321               24699999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      ||+.||+|||++ +||||||||+||||++++.+||+|||+++.....      ....||+.|||||++.++.++.++|||
T Consensus       153 qia~gl~yLH~~-~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVw  231 (308)
T 4gt4_A          153 QIAAGMEYLSSH-HVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIW  231 (308)
T ss_dssp             HHHHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhh
Confidence            999999999999 9999999999999999999999999999864322      335689999999999999999999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||||++|||+| |..||.+......     ...+......+.|..++.++.+||.+||+.||.+|||+.+|++.|+..
T Consensus       232 SfGvvl~El~t~g~~Pf~~~~~~~~-----~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          232 SYGVVLWEVFSYGLQPYCGYSNQDV-----VEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHHHHTTTCCTTTTCCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             hHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            99999999999 7888766432221     111222233456788999999999999999999999999999999865

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-47  Score=350.49  Aligned_cols=203  Identities=13%  Similarity=0.177  Sum_probs=162.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.|.+|+.++++++|||||+++..+.         .+|||||+|+.+..+..+.+++++..+..++.||+.||+|||
T Consensus        67 ~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH  146 (290)
T 3fpq_A           67 SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH  146 (290)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999985432         359999997655555555678999999999999999999999


Q ss_pred             cCCC--ceeccCCCCCEEECC-CCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           86 SKER--ALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~--ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++ |  ||||||||+||||++ ++.+||+|||+|+.....  .+.+||+.|||||++. ++++.++|||||||++|||+|
T Consensus       147 ~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyellt  224 (290)
T 3fpq_A          147 TR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMAT  224 (290)
T ss_dssp             TS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHH
T ss_pred             HC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHH
Confidence            99 7  999999999999985 799999999999875443  3467999999999986 469999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+......   ....+........++...++++.+||.+||+.||++|||+.+++++
T Consensus       225 g~~Pf~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          225 SEYPYSECQNAAQ---IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             SSCTTTTCSSHHH---HHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCCCCCCCcHHH---HHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            9999865321110   0111111111122344566789999999999999999999999864

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.2e-47  Score=352.92  Aligned_cols=214  Identities=14%  Similarity=0.057  Sum_probs=171.7

Q ss_pred             HHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceecc
Q 015733           20 FIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHD   94 (401)
Q Consensus        20 f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~d   94 (401)
                      +.+|+.++++++|||||+++..++     .+|||||+|+.+..+....+++++..+..++.||+.||+|||++ ||||||
T Consensus        97 ~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRD  175 (336)
T 4g3f_A           97 RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR-RILHGD  175 (336)
T ss_dssp             CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT-TEECSC
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cceecc
Confidence            357999999999999999995554     34999999765555544557899999999999999999999999 999999


Q ss_pred             CCCCCEEECCCC-CeEEecccCccccCCC---------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           95 LNAYRIVFDDDV-NPRLSCFGLMKNSRDG---------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        95 lk~~Nill~~~~-~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |||+||||+.+| .+||+|||+|+.....         ...+||+.|||||++.+..++.++|||||||++|||+||+.|
T Consensus       176 lKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~P  255 (336)
T 4g3f_A          176 VKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP  255 (336)
T ss_dssp             CCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCC
Confidence            999999999988 5999999999875432         235799999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccc-cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCCCCCcccc
Q 015733          165 PPSHALDLIRDRNIQTLTDS-CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEVPSHVLM  238 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~~~~~~~~  238 (401)
                      |.+.....    ....+... .....+|+.+++.+.+||.+||++||.+|||+.|+++.|.........-.+|+.
T Consensus       256 f~~~~~~~----~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~  326 (336)
T 4g3f_A          256 WTQYFRGP----LCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK  326 (336)
T ss_dssp             STTTCCSC----CHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred             CCCCCHHH----HHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCc
Confidence            86542211    11111111 111245677889999999999999999999999999998877655444444443

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=4.9e-46  Score=338.21  Aligned_cols=199  Identities=16%  Similarity=0.223  Sum_probs=159.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++++++|||||+++..++     .+|||||+|++...+. ..+++++..+..++.||+.||+|||++ ||
T Consensus        56 ~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~g~L~~~l~-~~~~l~e~~~~~~~~qi~~al~ylH~~-~I  133 (275)
T 3hyh_A           56 MQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIV-QRDKMSEQEARRFFQQIISAVEYCHRH-KI  133 (275)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCEEHHHHHH-HSCSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3467999999999999999999995555     3499999877777665 456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+|+.....   .+.+||+.|||||++.+..+ +.++||||+||++|+|+||+.||.
T Consensus       134 iHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~  213 (275)
T 3hyh_A          134 VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD  213 (275)
T ss_dssp             CCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999875443   35689999999999998765 679999999999999999999997


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +...........    ..  ...+|..+++++.+||.+||+.||.+|||+.+++++
T Consensus       214 ~~~~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          214 DESIPVLFKNIS----NG--VYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             CSSHHHHHHHHH----HT--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             CCCHHHHHHHHH----cC--CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            654332221111    11  124566788899999999999999999999999974

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=3.2e-46  Score=349.16  Aligned_cols=202  Identities=15%  Similarity=0.160  Sum_probs=166.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..++     .+|||||+|+.+..+.. ...+++..+..++.||+.||+|||++ ||
T Consensus       114 ~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~-~~~l~e~~~~~~~~qi~~aL~ylH~~-~I  191 (346)
T 4fih_A          114 RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVCLAVLQALSVLHAQ-GV  191 (346)
T ss_dssp             SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3567999999999999999999995554     34999999765554443 35699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |||||||+||||+.+|.+||+|||+|+.....    .+.+||+.|||||++.+..|+.++|||||||++|||+||..||.
T Consensus       192 iHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  271 (346)
T 4fih_A          192 IHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  271 (346)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999875432    45689999999999999999999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +..............   ......+..+++++.+||.+||+.||.+|||+.|++++
T Consensus       272 ~~~~~~~~~~i~~~~---~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          272 NEPPLKAMKMIRDNL---PPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             TSCHHHHHHHHHHSS---CCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CcCHHHHHHHHHcCC---CCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            643221111111110   01122345678899999999999999999999999874

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.2e-46  Score=350.80  Aligned_cols=202  Identities=16%  Similarity=0.187  Sum_probs=167.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc-CCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS-GETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...+.|.+|+.++++++|||||+++..++     .+|||||+|+ |...+. .+...+++..++.++.||+.||.|||++
T Consensus        65 ~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~  144 (350)
T 4b9d_A           65 KEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR  144 (350)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34578999999999999999999995554     3499999965 445443 3456689999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                       |||||||||+||||+.+|.+||+|||+|+.....    .+.+||+.|||||++.+..|+.++|||||||++|||+||+.
T Consensus       145 -~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~  223 (350)
T 4b9d_A          145 -KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKH  223 (350)
T ss_dssp             -TCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             -CeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence             9999999999999999999999999999876543    24579999999999999899999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.+...........    ... ....+..++.++.+||.+||++||.+|||+.+++++
T Consensus       224 PF~~~~~~~~~~~i~----~~~-~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          224 AFEAGSMKNLVLKII----SGS-FPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             SCCCSSHHHHHHHHH----HTC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCCCcCHHHHHHHHH----cCC-CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            997654322221111    111 123456778899999999999999999999999873

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.2e-46  Score=345.16  Aligned_cols=199  Identities=17%  Similarity=0.214  Sum_probs=167.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++|||||+++..++     .+|||||+|+.+..+..+.+.+++..+..++.||+.||+|||++ ||
T Consensus        75 ~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~-~I  153 (311)
T 4aw0_A           75 KVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK-GI  153 (311)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3467999999999999999999996555     34999999865555544567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.++.+||+|||+|+.....      .+.+||+.|||||++.+..++.++||||+||++|||+||..|
T Consensus       154 iHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P  233 (311)
T 4aw0_A          154 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP  233 (311)
T ss_dssp             ECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999875321      356899999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |.+............    .  ...+|..+++++.+||.+||+.||.+|||+.|++.
T Consensus       234 F~~~~~~~~~~~i~~----~--~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~  284 (311)
T 4aw0_A          234 FRAGNEGLIFAKIIK----L--EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEG  284 (311)
T ss_dssp             SCCSSHHHHHHHHHH----T--CCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred             CCCCCHHHHHHHHHc----C--CCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence            976543322222111    1  12456778889999999999999999999998743

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=4.2e-46  Score=351.16  Aligned_cols=208  Identities=18%  Similarity=0.264  Sum_probs=169.7

Q ss_pred             hhHHHHHHHHHHhhhCC-CeEEEeeee-cc-----ccEeeecCCccc-ccccC---------------CCCCCCHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSS-FILLAVIFM-FQ-----IPSYEFHCLTFS-NNFSG---------------ETQPMKWAMRLR   72 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h-~niv~~~~~-~~-----~~v~Ey~~~~l~-~~~~~---------------~~~~l~~~~~~~   72 (401)
                      ..+.|.+|+.++.+++| ||||++++. .+     .+|||||+|+.+ ..+..               ....++|..++.
T Consensus       110 ~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  189 (353)
T 4ase_A          110 EHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC  189 (353)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHH
Confidence            35689999999999977 899998843 22     349999997544 43321               135689999999


Q ss_pred             HHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCC
Q 015733           73 VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPES  146 (401)
Q Consensus        73 i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~  146 (401)
                      ++.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+......      ...||+.|||||++.+..++.++
T Consensus       190 ~~~qia~gl~yLH~~-~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ks  268 (353)
T 4ase_A          190 YSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS  268 (353)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHhHhhC-CeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcc
Confidence            999999999999999 99999999999999999999999999998754332      34578999999999999999999


Q ss_pred             cchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          147 VMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       147 Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |||||||++|||+| |..||.+....    ..+...+....+...|..+++++.+||.+||+.||.+|||+.+|+++|..
T Consensus       269 DVwS~Gv~l~El~t~G~~Pf~~~~~~----~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~  344 (353)
T 4ase_A          269 DVWSFGVLLWEIFSLGASPYPGVKID----EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN  344 (353)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSTTCCCS----HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             cEeehHHHHHHHHhCCCCCCCCCCHH----HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHH
Confidence            99999999999998 88888653211    11122223334456778889999999999999999999999999999987


Q ss_pred             ccc
Q 015733          226 LQK  228 (401)
Q Consensus       226 ~~~  228 (401)
                      +.+
T Consensus       345 llq  347 (353)
T 4ase_A          345 LLQ  347 (353)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.6e-46  Score=344.64  Aligned_cols=199  Identities=17%  Similarity=0.173  Sum_probs=159.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....|.+|+.++++++|||||+++..++     .+|||||+|+.+..+..+.+++++..+..++.||+.||+|||++ ||
T Consensus        69 ~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~-~I  147 (304)
T 3ubd_A           69 DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL-GI  147 (304)
T ss_dssp             ECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3457899999999999999999995554     34999999765555555567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.+|.+||+|||+|+....    ..+.+||+.|||||++.+..++.++|||||||++|||+||+.||.
T Consensus       148 iHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~  227 (304)
T 3ubd_A          148 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQ  227 (304)
T ss_dssp             CCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999986432    245689999999999999999999999999999999999999997


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP-----RSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~-----~~vl~  221 (401)
                      +...........    ..  ...+|..+++++.+||.+||++||.+|||+     +++++
T Consensus       228 ~~~~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          228 GKDRKETMTMIL----KA--KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             CSSHHHHHHHHH----HC--CCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             CcCHHHHHHHHH----cC--CCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence            654332221111    11  224567788999999999999999999984     56665

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.9e-45  Score=350.90  Aligned_cols=202  Identities=15%  Similarity=0.164  Sum_probs=165.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+.. ...+++..+..++.||+.||+|||++ ||
T Consensus       191 ~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~-~~~l~e~~~~~~~~qil~aL~ylH~~-~I  268 (423)
T 4fie_A          191 RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVCLAVLQALSVLHAQ-GV  268 (423)
T ss_dssp             SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3567999999999999999999995554     34999999875554443 35699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      |||||||+||||+.+|.+||+|||+|+.....    .+.+||+.|||||++.+..|+.++|||||||++|||++|..||.
T Consensus       269 iHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  348 (423)
T 4fie_A          269 IHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  348 (423)
T ss_dssp             ECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999875432    45689999999999999999999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.............. .  .....+..++.++.+||.+||+.||.+|||+.|++++
T Consensus       349 ~~~~~~~~~~i~~~~-~--~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          349 NEPPLKAMKMIRDNL-P--PRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             TSCHHHHHHHHHHSC-C--CCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CcCHHHHHHHHHcCC-C--CCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            643221111111110 0  1112345678899999999999999999999999874

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.3e-44  Score=331.48  Aligned_cols=208  Identities=13%  Similarity=0.146  Sum_probs=156.0

Q ss_pred             HHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC----
Q 015733           21 IVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK----   87 (401)
Q Consensus        21 ~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~----   87 (401)
                      ..|+..+.+++|||||++++...         .+|||||+|+.+..+.. ..+++|+.+.+++.|++.||+|||++    
T Consensus        45 e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~-~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~  123 (303)
T 3hmm_A           45 EAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-RYTVTVEGMIKLALSTASGLAHLHMEIVGT  123 (303)
T ss_dssp             HHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH-HCCBCHHHHHHHHHHHHHHHHHHHCCBCST
T ss_pred             HHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            34566667899999999884322         35999999654444432 35699999999999999999999975    


Q ss_pred             ---CCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC------ccCCCCcchh
Q 015733           88 ---ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG------RVTPESVMYS  150 (401)
Q Consensus        88 ---~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~------~~~~~~Dv~s  150 (401)
                         .+||||||||+||||+.++.+||+|||+++.....        ....||+.|||||++.+.      .++.++||||
T Consensus       124 ~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS  203 (303)
T 3hmm_A          124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA  203 (303)
T ss_dssp             TCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHH
T ss_pred             cCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhh
Confidence               28999999999999999999999999999875432        134689999999999753      4788999999


Q ss_pred             hHHHHHHHHhCCCCCCchhh------HHhh-----hccccccccccccCCCCh-----HHHHHHHHHHHHhcccCCCCCC
Q 015733          151 FGTLLLDLLSGKHIPPSHAL------DLIR-----DRNIQTLTDSCLEGQFSS-----DEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       151 lG~~l~el~tg~~p~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                      |||++|||+||..|+.....      ....     ......+.....++.+|.     +++..+.+||.+||+.||++||
T Consensus       204 ~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RP  283 (303)
T 3hmm_A          204 MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL  283 (303)
T ss_dssp             HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSC
T ss_pred             HHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCc
Confidence            99999999999876532110      0000     000111222233333433     4667899999999999999999


Q ss_pred             CHHHHHHHHHccccC
Q 015733          215 NPRSLVTALVTLQKD  229 (401)
Q Consensus       215 s~~~vl~~l~~~~~~  229 (401)
                      |+.+|++.|+.+.+.
T Consensus       284 t~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          284 TALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.2e-43  Score=327.72  Aligned_cols=196  Identities=16%  Similarity=0.217  Sum_probs=149.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----------------ccEeeecCCcccccccCCCC---CCCHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----------------IPSYEFHCLTFSNNFSGETQ---PMKWAMRLRVA   74 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------------~~v~Ey~~~~l~~~~~~~~~---~l~~~~~~~i~   74 (401)
                      ...+.|.+|+.++++++|||||+++..+.                 .+|||||+|+.+..+.....   ..++..++.++
T Consensus        45 ~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~  124 (299)
T 4g31_A           45 LAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF  124 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHH
Confidence            34578999999999999999999985432                 35999999764444333322   35677789999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----------------CccccccccCCccccc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----------------RSYSTNLAFTPPEYLR  138 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----------------~~~~~~~~y~aPE~~~  138 (401)
                      .||+.||+|||++ |||||||||+|||++.++.+||+|||+|+.....                .+.+||+.|||||++.
T Consensus       125 ~qi~~al~ylH~~-~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~  203 (299)
T 4g31_A          125 LQIAEAVEFLHSK-GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH  203 (299)
T ss_dssp             HHHHHHHHHHHHT-TCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHT
T ss_pred             HHHHHHHHHHHHC-cCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHc
Confidence            9999999999999 9999999999999999999999999999875432                2346999999999999


Q ss_pred             cCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCC---hHHHHHHHHHHHHhcccCCCCCCC
Q 015733          139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFS---SDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       139 ~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      +..++.++|||||||++|||++   ||........   ....+    ....+|   ...++.+.+||.+||+.||.+|||
T Consensus       204 ~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~---~~~~~----~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps  273 (299)
T 4g31_A          204 GNSYSHKVDIFSLGLILFELLY---PFSTQMERVR---TLTDV----RNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPE  273 (299)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHH---HHHHH----HTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHH---HHHHH----hcCCCCCCCcccCHHHHHHHHHHcCCChhHCcC
Confidence            9999999999999999999997   6654321111   11111    112233   334566789999999999999999


Q ss_pred             HHHHHH
Q 015733          216 PRSLVT  221 (401)
Q Consensus       216 ~~~vl~  221 (401)
                      +.++++
T Consensus       274 ~~eil~  279 (299)
T 4g31_A          274 AINIIE  279 (299)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999987

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-42  Score=329.13  Aligned_cols=206  Identities=13%  Similarity=0.227  Sum_probs=162.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+.+++|+.++++++|||||+++..+.           .+|||||+|++...+. ..+++++..+..++.||+.||.|
T Consensus        95 ~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~g~L~~~i~-~~~~l~~~~~~~~~~qil~al~y  173 (398)
T 4b99_A           95 TNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIH-SSQPLTLEHVRYFLYQLLRGLKY  173 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCSEEHHHHHT-SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999985432           3599999988777665 45789999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC--------CCccccccccCCccccccC-ccCCCCcchhhHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD--------GRSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~--------~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~  154 (401)
                      ||++ |||||||||+|||++.++.+||+|||+++....        ..+.+||+.|||||++.+. .++.++||||+||+
T Consensus       174 lH~~-~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~i  252 (398)
T 4b99_A          174 MHSA-QVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCI  252 (398)
T ss_dssp             HHHT-TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHH
T ss_pred             HHHC-cCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHH
Confidence            9999 999999999999999999999999999986432        2356899999999998874 57999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccc------------------cccC--C-----CChHHHHHHHHHHHHhcccC
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDS------------------CLEG--Q-----FSSDEGTELVRLASRCLQYE  209 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~------------------~~~~--~-----~~~~~~~~l~~li~~cl~~~  209 (401)
                      +|||+||+.||.+................+                  .+..  .     ..+..+.++.+||.+||..|
T Consensus       253 l~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d  332 (398)
T 4b99_A          253 FGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFE  332 (398)
T ss_dssp             HHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSS
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCC
Confidence            999999999997643211111100000000                  0000  0     11235678999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |.+|||+.+++++
T Consensus       333 P~~R~ta~e~L~H  345 (398)
T 4b99_A          333 PSARISAAAALRH  345 (398)
T ss_dssp             TTTSCCHHHHTTS
T ss_pred             hhHCcCHHHHhcC
Confidence            9999999999874

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.3e-40  Score=313.82  Aligned_cols=203  Identities=16%  Similarity=0.190  Sum_probs=153.7

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+.++..+ +||||++++..++     .+|||||+|+.+..+.   +.+++.++..++.||+.||+|||++ |
T Consensus        62 ~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~---~~l~~~~~~~~~~qll~al~ylH~~-g  137 (361)
T 4f9c_A           62 HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDIL---NSLSFQEVREYMLNLFKALKRIHQF-G  137 (361)
T ss_dssp             CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHH---TTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            456789999999998 6999999885554     3499999965444333   2499999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC-CCeEEecccCccccCCC--------------------------------CccccccccCCccc
Q 015733           90 ALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDG--------------------------------RSYSTNLAFTPPEY  136 (401)
Q Consensus        90 ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~--------------------------------~~~~~~~~y~aPE~  136 (401)
                      |+||||||+|||++.+ +.+||+|||+|+.....                                .+.+||+.|+|||+
T Consensus       138 IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  217 (361)
T 4f9c_A          138 IVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEV  217 (361)
T ss_dssp             EECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHH
T ss_pred             eEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHH
Confidence            9999999999999877 79999999999754321                                23468999999999


Q ss_pred             cccC-ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhc-------------------------------ccccccc-
Q 015733          137 LRTG-RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR-------------------------------NIQTLTD-  183 (401)
Q Consensus       137 ~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~-------------------------------~~~~~~~-  183 (401)
                      +.+. .++.++||||+||++|||+||+.||.....+...-.                               ....... 
T Consensus       218 l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  297 (361)
T 4f9c_A          218 LTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCER  297 (361)
T ss_dssp             HTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHH
T ss_pred             HcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHh
Confidence            9875 589999999999999999999999854321100000                               0000000 


Q ss_pred             --------c---------cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          184 --------S---------CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       184 --------~---------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                              +         ..........++++.+||.+||+.||.+|||++|++++
T Consensus       298 ~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~H  353 (361)
T 4f9c_A          298 LRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLH  353 (361)
T ss_dssp             HC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             hccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                    0         00001123456789999999999999999999999864

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.9e-40  Score=331.61  Aligned_cols=196  Identities=17%  Similarity=0.164  Sum_probs=159.5

Q ss_pred             HHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCC
Q 015733           23 SLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNA   97 (401)
Q Consensus        23 E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~   97 (401)
                      ++.+++.++|||||+++..++     .+|||||+||.+..+..+.+.+++..+..++.||+.||+|||++ |||||||||
T Consensus       242 ~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~-gIiHRDLKP  320 (689)
T 3v5w_A          242 MLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKP  320 (689)
T ss_dssp             HHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSG
T ss_pred             HHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCch
Confidence            356677889999999996666     34999999876555555567899999999999999999999999 999999999


Q ss_pred             CCEEECCCCCeEEecccCccccCCC--CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhh
Q 015733           98 YRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIR  174 (401)
Q Consensus        98 ~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~  174 (401)
                      +||||+.+|.+||+|||+|+.....  .+.+||+.|||||++.. ..|+.++|||||||++|||+||..||.+.......
T Consensus       321 eNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~  400 (689)
T 3v5w_A          321 ANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH  400 (689)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH
T ss_pred             HHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence            9999999999999999999876543  45789999999999975 57999999999999999999999999764221100


Q ss_pred             hccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                       .....+..  ....+|..+++++.+||.+||+.||.+|++     +.+|+.+
T Consensus       401 -~i~~~i~~--~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          401 -EIDRMTLT--MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             -HHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             -HHHHhhcC--CCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence             00111111  123467778999999999999999999998     6788763

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=7.9e-40  Score=328.18  Aligned_cols=204  Identities=17%  Similarity=0.132  Sum_probs=166.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+.+|+.++++++|||||+++..++     .+|||||+|+ |...+......+++..+..++.||+.||.|||++ |
T Consensus       197 ~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~-~  275 (573)
T 3uto_A          197 DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN-N  275 (573)
T ss_dssp             HHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3567899999999999999999996555     3499999965 5555555667899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC--CCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDD--VNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~--~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.+  +.+||+|||+++......   ..+||+.|||||++.+..++.++|||||||++|||++|..|
T Consensus       276 iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~P  355 (573)
T 3uto_A          276 YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP  355 (573)
T ss_dssp             EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             eeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            9999999999999854  899999999999876543   45799999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+.............  ........+..++.++.+||.+||+.||.+|||+.+++++
T Consensus       356 f~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          356 FGGENDDETLRNVKSC--DWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             SCCSSHHHHHHHHHTT--CCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCcCHHHHHHHHHhC--CCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            9765432221111111  0011112234567889999999999999999999999874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.2e-38  Score=297.17  Aligned_cols=209  Identities=16%  Similarity=0.252  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCC--CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGET--QPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+....  ..+++..++.++.||+.||.|||++ 
T Consensus        78 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-  156 (309)
T 3p86_A           78 VNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-  156 (309)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-
Confidence            467999999999999999999885444     3499999875 444444322  2399999999999999999999999 


Q ss_pred             C--ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           89 R--ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        89 ~--ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |  |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|+||.
T Consensus       157 ~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~  236 (309)
T 3p86_A          157 NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ  236 (309)
T ss_dssp             SSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCC
T ss_pred             CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            8  999999999999999999999999999764433    3456899999999999988999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      .||.........    ..+........++..++..+.+||.+||+.||.+|||+.++++.|+.+.+..
T Consensus       237 ~Pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          237 QPWGNLNPAQVV----AAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             CTTTTSCHHHHH----HHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             CCCCCCCHHHHH----HHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence            998654322111    1111112233556778889999999999999999999999999999887654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=295.33  Aligned_cols=211  Identities=18%  Similarity=0.245  Sum_probs=170.0

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+......+++..+..++.|++.||.|||++ 
T Consensus        49 ~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~-  127 (310)
T 3s95_A           49 ETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM-  127 (310)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            34678999999999999999999884443     3499999864 5555554567899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC------------------ccccccccCCccccccCccCCCCcchh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------------------SYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------------------~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      ||+||||||+|||++.++.+||+|||+++......                  ...||+.|+|||++.+..++.++||||
T Consensus       128 ~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  207 (310)
T 3s95_A          128 NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS  207 (310)
T ss_dssp             TEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHH
T ss_pred             CccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHH
Confidence            99999999999999999999999999998653321                  346899999999999999999999999


Q ss_pred             hHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          151 FGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       151 lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||+++|||++|..|+.......   ...............+..++..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       208 lG~~l~el~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          208 FGIVLCEIIGRVNADPDYLPRT---MDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             HHHHHHHHHHTCCSSTTTSCBC---TTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcchhhhH---HHHhhhhhccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            9999999999998875432111   011111111122234566777899999999999999999999999999988754

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=5.4e-38  Score=294.88  Aligned_cols=199  Identities=19%  Similarity=0.283  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.+++.++||||++++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||+
T Consensus        58 ~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~-~iv  136 (328)
T 3fe3_A           58 LQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK-RIV  136 (328)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CEe
Confidence            467889999999999999999985444     34999998754444443456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccC-CCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVT-PESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~-~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||++......   ...+||+.|+|||++.+..++ .++|||||||++|+|+||..||.+
T Consensus       137 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  216 (328)
T 3fe3_A          137 HRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG  216 (328)
T ss_dssp             CSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999875443   345789999999999987764 799999999999999999999876


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............    .  ...+|...+.++.+|+.+||+.||.+|||+.+++++
T Consensus       217 ~~~~~~~~~i~~----~--~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          217 QNLKELRERVLR----G--KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             SSHHHHHHHHHH----C--CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHh----C--CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            543322221111    1  123456678899999999999999999999999875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.8e-37  Score=289.30  Aligned_cols=213  Identities=20%  Similarity=0.376  Sum_probs=174.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..+.|.+|+.+++.++||||+.++..+.     .+||||++|+ +...+...   ...+++..++.++.|++.||.|||+
T Consensus        78 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  157 (321)
T 2qkw_B           78 GIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT  157 (321)
T ss_dssp             HHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC
Confidence            3468999999999999999999885443     3499999864 54444332   2469999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      + |++||||||+||+++.++.+||+|||+++.....      ....||+.|+|||++.+..++.++|||||||++|||+|
T Consensus       158 ~-~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~  236 (321)
T 2qkw_B          158 R-AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLC  236 (321)
T ss_dssp             T-TEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHH
T ss_pred             C-CeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHh
Confidence            9 9999999999999999999999999998864322      22357899999999998899999999999999999999


Q ss_pred             CCCCCCchhh-----------HHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHAL-----------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |+.||.....           ...........+++......+..++..+.+++.+||+.||.+|||+.++++.|+.+.+.
T Consensus       237 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          237 ARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             CCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            9998864321           11122233444455555566788999999999999999999999999999999877653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.2e-38  Score=294.32  Aligned_cols=210  Identities=14%  Similarity=0.188  Sum_probs=170.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.|.+|+.++.+++||||+.++..+.     .+||||++| ++...+......+++..++.++.||+.||.|||+. 
T Consensus        92 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-  170 (325)
T 3kul_A           92 RQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL-  170 (325)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            34578999999999999999999885444     349999986 55555555567899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      ||+||||||+|||++.++.+||+|||+++......       ...+|+.|+|||++.+..++.++|||||||++|||++ 
T Consensus       171 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~  250 (325)
T 3kul_A          171 GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY  250 (325)
T ss_dssp             TEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred             CeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998754432       1234678999999998899999999999999999999 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |..||..........     .+........+..++..+.+||.+||+.||.+|||+.+|++.|+.+....
T Consensus       251 g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~  315 (325)
T 3kul_A          251 GERPYWNMTNRDVIS-----SVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP  315 (325)
T ss_dssp             SCCTTTTSCHHHHHH-----HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred             CCCCcccCCHHHHHH-----HHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence            888876543222111     11112233456678889999999999999999999999999999987653

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.3e-38  Score=297.25  Aligned_cols=207  Identities=13%  Similarity=0.199  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++.+++||||+.++..+.    ..||||+++ ++...+......+++..++.++.||+.||.|||++ ||+
T Consensus        59 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iv  137 (325)
T 3kex_A           59 FQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH-GMV  137 (325)
T ss_dssp             BCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            467889999999999999999885443    349999995 56666655557899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      ||||||+|||++.++.+||+|||+++.....      ....+++.|+|||++.+..++.++|||||||++|+|+| |..|
T Consensus       138 H~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p  217 (325)
T 3kex_A          138 HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP  217 (325)
T ss_dssp             CSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             CCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCC
Confidence            9999999999999999999999999875433      22346789999999998999999999999999999999 9988


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |........     ...+........+..++.++.++|.+||+.||.+|||+.++++.|..+...
T Consensus       218 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          218 YAGLRLAEV-----PDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             TTTSCTTHH-----HHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             ccccCHHHH-----HHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            765322111     111112222334556777899999999999999999999999999988654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.6e-38  Score=297.22  Aligned_cols=208  Identities=13%  Similarity=0.192  Sum_probs=170.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.    ..|+||+++ ++...+......+++..++.++.||+.||.|||++ ||
T Consensus        60 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~i  138 (327)
T 3poz_A           60 ANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR-RL  138 (327)
T ss_dssp             CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC-Ce
Confidence            4578999999999999999999884433    348999985 56666655567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      +||||||+|||++.++.+||+|||+++......      ...+|+.|+|||++.+..++.++|||||||++|||+| |..
T Consensus       139 vH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  218 (327)
T 3poz_A          139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK  218 (327)
T ss_dssp             CCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             eCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCC
Confidence            999999999999999999999999998754332      2345779999999999999999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||......     .....+........+..++..+.+++.+||+.||.+|||+.++++.|..+...
T Consensus       219 p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          219 PYDGIPAS-----EISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             TTTTCCGG-----GHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             CccCCCHH-----HHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence            87653221     12222222233345667888999999999999999999999999999888654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.9e-38  Score=297.69  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=168.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++++++||||++++..+.     .+||||+.|++...+.....++++..+..++.|++.||.|||++ ||+
T Consensus        98 ~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~iv  176 (348)
T 1u5q_A           98 WQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH-NMI  176 (348)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT-TCB
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            467999999999999999999885443     34999999888777765567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      ||||||+|||++.++.+||+|||++..........||+.|+|||++.   .+.++.++|||||||++|||+||..||...
T Consensus       177 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          177 HRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             CCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             eCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999998877777788999999999985   467899999999999999999999998653


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      .....    ...+.........+..++..+.+||.+||+.||.+|||+.++++...-
T Consensus       257 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~  309 (348)
T 1u5q_A          257 NAMSA----LYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV  309 (348)
T ss_dssp             CHHHH----HHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred             ChHHH----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence            22111    111111111112234567889999999999999999999999876554

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.3e-37  Score=297.31  Aligned_cols=207  Identities=16%  Similarity=0.271  Sum_probs=167.5

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i   73 (401)
                      ..+.|.+|+.++.++ +||||+.++..+.     .+||||++|+ +...+...               ...+++..++.+
T Consensus       129 ~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  208 (370)
T 2psq_A          129 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC  208 (370)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHH
Confidence            346799999999999 8999999985443     3499999964 44444322               245899999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCc
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      +.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.+..++.++|
T Consensus       209 ~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  287 (370)
T 2psq_A          209 TYQLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  287 (370)
T ss_dssp             HHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHhC-CeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHH
Confidence            99999999999999 9999999999999999999999999999865432      2234578899999999889999999


Q ss_pred             chhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          148 MYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       148 v~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||||||++|||+| |..||.+.....     ....+........|..++.++.++|.+||+.||.+|||+.++++.|+.+
T Consensus       288 vwslG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          288 VWSFGVLMWEIFTLGGSPYPGIPVEE-----LFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCGGG-----HHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            9999999999999 888876532211     1111222223455677888999999999999999999999999999887


Q ss_pred             cc
Q 015733          227 QK  228 (401)
Q Consensus       227 ~~  228 (401)
                      ..
T Consensus       363 l~  364 (370)
T 2psq_A          363 LT  364 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=2.1e-37  Score=291.83  Aligned_cols=200  Identities=16%  Similarity=0.220  Sum_probs=165.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +...+.+|+.++..++||||+.++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        48 ~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  126 (337)
T 1o6l_A           48 EVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR-DV  126 (337)
T ss_dssp             CHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4567899999999999999999885554     34999999765554444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.+|.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       127 vHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  206 (337)
T 1o6l_A          127 VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  206 (337)
T ss_dssp             BCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCC
Confidence            9999999999999999999999999986332    234678999999999998899999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ............    ..  ...+|..++.++.+||.+||+.||.+||     ++.+|+++
T Consensus       207 ~~~~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          207 NQDHERLFELIL----ME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             CSSHHHHHHHHH----HC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             CCCHHHHHHHHH----cC--CCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence            643322211111    11  1235667888999999999999999999     89999874

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=9.8e-38  Score=297.59  Aligned_cols=215  Identities=14%  Similarity=0.142  Sum_probs=170.8

Q ss_pred             hhhhhhHHHHHHHHHHhhhCCCeEEEeeeec---------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 015733           12 MIRLQSTYFIVSLVLIASMSSFILLAVIFMF---------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        12 ~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~---------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      +.++....++.|+..+..++||||+.++..+         ..+||||+.+++...+......+++..++.++.||+.||.
T Consensus        87 ~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~  166 (364)
T 3op5_A           87 YQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILE  166 (364)
T ss_dssp             HHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            4456667788889999999999999888432         2459999955666666555678999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEEC--CCCCeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcch
Q 015733           83 YCTSKERALYHDLNAYRIVFD--DDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~--~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      |||++ ||+||||||+|||++  .++.+||+|||+++.....           ....||+.|+|||++.+..++.++|||
T Consensus       167 ~lH~~-~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  245 (364)
T 3op5_A          167 YIHEH-EYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLE  245 (364)
T ss_dssp             HHHHT-TEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHH
T ss_pred             HHHHC-CeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHH
Confidence            99999 999999999999999  8899999999999764321           223489999999999988899999999


Q ss_pred             hhHHHHHHHHhCCCCCCchhhHHh--------hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          150 SFGTLLLDLLSGKHIPPSHALDLI--------RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       150 slG~~l~el~tg~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ||||++|||+||..||.+......        .......+.+..+.   +..++.++.+++..||+.||.+|||+.+|++
T Consensus       246 slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          246 ILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFP---AANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             HHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSC---TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcc---cccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            999999999999999875321110        01111222222221   2345778999999999999999999999999


Q ss_pred             HHHccccCC
Q 015733          222 ALVTLQKDT  230 (401)
Q Consensus       222 ~l~~~~~~~  230 (401)
                      .|..+....
T Consensus       323 ~l~~~~~~~  331 (364)
T 3op5_A          323 ILLQGLKAI  331 (364)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998876644

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.3e-38  Score=290.19  Aligned_cols=210  Identities=20%  Similarity=0.274  Sum_probs=167.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.|.+|+.++++++||||++++..+.     .+||||++| ++...+......+++..++.++.||+.||.|||++ 
T Consensus        54 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-  132 (289)
T 4fvq_A           54 NYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN-  132 (289)
T ss_dssp             GGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC-
Confidence            34578999999999999999999885443     349999995 55555554555599999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCC--------eEEecccCccccCCCCccccccccCCcccccc-CccCCCCcchhhHHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVN--------PRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~--------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~  159 (401)
                      ||+||||||+|||++.++.        +||+|||++..........+|+.|+|||++.+ ..++.++|||||||++|||+
T Consensus       133 ~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~  212 (289)
T 4fvq_A          133 TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC  212 (289)
T ss_dssp             TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             CeECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence            9999999999999998887        99999999987766666678999999999987 67899999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCC
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE  231 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~  231 (401)
                      ||..|+..............      .....+...+.++.+|+.+||+.||.+|||+.++++.|+.+.....
T Consensus       213 ~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          213 SGGDKPLSALDSQRKLQFYE------DRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             TTTCCTTTTSCHHHHHHHHH------TTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             cCCCCCccccchHHHHHHhh------ccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence            97766544321111111000      1123344456779999999999999999999999999999876443

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1e-37  Score=298.32  Aligned_cols=208  Identities=17%  Similarity=0.216  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.++|.+|+.++.+++||||++++..+.     .+||||++| ++...+......+++..++.++.||+.||.|||++ |
T Consensus        89 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~  167 (373)
T 2qol_A           89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM-G  167 (373)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999985443     349999985 56666655566899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      |+||||||+|||++.++.+||+|||+++......       ...+++.|+|||++.+..++.++|||||||++|||++ |
T Consensus       168 ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g  247 (373)
T 2qol_A          168 YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYG  247 (373)
T ss_dssp             CCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             eeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999998754321       1124678999999998999999999999999999998 8


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ..||.........     ..+........+..++..+.+||.+||+.||.+|||+.+|++.|+.+...
T Consensus       248 ~~P~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          248 ERPYWEMSNQDVI-----KAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             -CTTTTCCHHHHH-----HHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHH-----HHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence            8887654322111     11122223344567788999999999999999999999999999988654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.2e-37  Score=286.43  Aligned_cols=211  Identities=14%  Similarity=0.172  Sum_probs=166.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+....+++++..++.++.|++.||.|||++ ||+
T Consensus        55 ~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~  133 (294)
T 4eqm_A           55 LKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM-RIV  133 (294)
T ss_dssp             HHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            468999999999999999999885444     34999999765554444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.+||+|||+++.....     ....||+.|+|||.+.+..++.++||||||+++|+|+||..||.
T Consensus       134 H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~  213 (294)
T 4eqm_A          134 HRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN  213 (294)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875432     23468999999999999889999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHccccC
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-NPRSLVTALVTLQKD  229 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~~vl~~l~~~~~~  229 (401)
                      +................ ......+..++..+.++|.+||+.||.+|| ++.++.+.|..+...
T Consensus       214 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~  276 (294)
T 4eqm_A          214 GETAVSIAIKHIQDSVP-NVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE  276 (294)
T ss_dssp             SSCHHHHHHHHHSSCCC-CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred             CCChHHHHHHHhhccCC-CcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence            65332221111111111 111223455778899999999999999998 899999999887654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.9e-37  Score=287.27  Aligned_cols=202  Identities=14%  Similarity=0.166  Sum_probs=162.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++||||++++..+.     .+||||++|+.+..+.. ...+++..+..++.|++.||.|||++ ||
T Consensus        60 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  137 (297)
T 3fxz_A           60 KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVCRECLQALEFLHSN-QV  137 (297)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            3567899999999999999999885433     34999998654444432 24699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+..++.++|||||||++|+|+||..||.
T Consensus       138 ~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  217 (297)
T 3fxz_A          138 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (297)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             eeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999998875433    23568999999999999999999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............   .........+..++..+.+||.+||+.||.+|||+.+++++
T Consensus       218 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          218 NENPLRALYLIA---TNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             TSCHHHHHHHHH---HHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCCHHHHHHHHH---hCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            542211110000   01111223456778889999999999999999999999874

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.8e-38  Score=301.82  Aligned_cols=207  Identities=22%  Similarity=0.301  Sum_probs=168.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++||||++++..+.     .+||||++| ++...+......+++..+..++.||+.||.|||++ |
T Consensus       155 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~  233 (377)
T 3cbl_A          155 LKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK-C  233 (377)
T ss_dssp             HHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4568999999999999999999885433     349999985 45555544455799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ++||||||+|||++.++.+||+|||+++......      ...+++.|+|||++.++.++.++|||||||++|||+| |.
T Consensus       234 ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~  313 (377)
T 3cbl_A          234 CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGA  313 (377)
T ss_dssp             EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSC
T ss_pred             cCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999998654331      1234678999999998899999999999999999998 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .||........     ...+........|..++..+.+||.+||+.||.+|||+.+|++.|+.+.+
T Consensus       314 ~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          314 SPYPNLSNQQT-----REFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             CSSTTSCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            88765432211     11122223344567788899999999999999999999999999988754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-37  Score=285.60  Aligned_cols=211  Identities=15%  Similarity=0.209  Sum_probs=161.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc---ccEeeecCCc-ccccccCCC--CCCCHHHHHHHHHHHHHHHHHHhc---
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ---IPSYEFHCLT-FSNNFSGET--QPMKWAMRLRVALHIAEALEYCTS---   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~---~~v~Ey~~~~-l~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~---   86 (401)
                      ..+.|.+|+.++++++||||++++....   .+||||++|+ +...+....  ..+++..++.++.|++.||.|||+   
T Consensus        44 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~  123 (307)
T 2eva_A           44 ERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQP  123 (307)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999985444   3599999864 555444332  247899999999999999999999   


Q ss_pred             CCCceeccCCCCCEEECCCCC-eEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           87 KERALYHDLNAYRIVFDDDVN-PRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~-~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      + ||+||||||+||+++.++. +||+|||++...... ....||+.|+|||++.+..++.++||||||+++|||+||+.|
T Consensus       124 ~-~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  202 (307)
T 2eva_A          124 K-ALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP  202 (307)
T ss_dssp             S-CCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCT
T ss_pred             C-CeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            7 8999999999999998887 799999998765433 345689999999999988999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |.........   .............+..++..+.++|.+||+.||.+|||+.++++.|+.+.+..
T Consensus       203 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          203 FDEIGGPAFR---IMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             TTTTCSSHHH---HHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             chhhCccHHH---HHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            8643211100   00001111223345567788999999999999999999999999999887654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=5.4e-37  Score=282.58  Aligned_cols=206  Identities=20%  Similarity=0.351  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc---ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC--ce
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ---IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER--AL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~---~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~--iv   91 (401)
                      +.|.+|+.++.+++||||++++..+.   .+||||+++ ++...+.....++++..++.++.|++.||.|||++ |  ++
T Consensus        68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~iv  146 (287)
T 4f0f_A           68 QEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIV  146 (287)
T ss_dssp             HHHHHHHHHHTTCCCTTBCCEEEEETTTTEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCB
T ss_pred             HHHHHHHHHHHhCCCCCchhhheeecCCCeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC-CCCee
Confidence            68999999999999999999985444   359999985 56566666677899999999999999999999999 8  99


Q ss_pred             eccCCCCCEEECCCCC-----eEEecccCccccCCC-CccccccccCCccccc--cCccCCCCcchhhHHHHHHHHhCCC
Q 015733           92 YHDLNAYRIVFDDDVN-----PRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLR--TGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~-----~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~--~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||||||+|||++.++.     +||+|||+++..... ....||+.|+|||++.  ...++.++|||||||++|+|++|..
T Consensus       147 H~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~  226 (287)
T 4f0f_A          147 HRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEG  226 (287)
T ss_dssp             CSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCC
Confidence            9999999999988776     999999999865544 3456899999999984  4567899999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||.........  ....+.........+..++..+.++|.+||+.||.+|||+.++++.|+.+
T Consensus       227 pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          227 PFDEYSYGKIK--FINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             TTTTCCCCHHH--HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             CCccccccHHH--HHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            98653211110  01111222334456677889999999999999999999999999999764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3.2e-37  Score=287.69  Aligned_cols=205  Identities=16%  Similarity=0.219  Sum_probs=163.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++++++||||++++..+.     .+||||++|++...+......+++..+..++.||+.||.|||++ ||+
T Consensus        63 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~iv  141 (311)
T 3niz_A           63 PSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH-RIL  141 (311)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             hHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            467899999999999999999985444     34999999988888877777899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+ ..++.++|||||||++|+|++|..||.
T Consensus       142 H~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  221 (311)
T 3niz_A          142 HRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFP  221 (311)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999875432    23467999999999876 568999999999999999999999986


Q ss_pred             chhhHHhhhcccccc------------------------ccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTL------------------------TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.............+                        ..........+..+.++.+||.+||+.||.+|||+.+++++
T Consensus       222 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          222 GVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             CSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             CCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            532111100000000                        00000001123356789999999999999999999999873

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.8e-37  Score=287.08  Aligned_cols=212  Identities=16%  Similarity=0.246  Sum_probs=167.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.++.+++||||++++..+.       .+||||+++ ++...+......+++..++.++.|++.||.|||+. 
T Consensus        55 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-  133 (295)
T 3ugc_A           55 LRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK-  133 (295)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC-
Confidence            467999999999999999999884331       359999986 55555554556699999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ||+||||||+|||++.++.+||+|||+++......       ...+++.|+|||.+.+..++.++||||||+++|+|+||
T Consensus       134 ~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g  213 (295)
T 3ugc_A          134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY  213 (295)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998754332       23456779999999999999999999999999999999


Q ss_pred             CCCCCchhhHHhh---hc--------cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          162 KHIPPSHALDLIR---DR--------NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       162 ~~p~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ..|+.........   ..        ..............+..++.++.+||.+||+.||.+|||+.++++.|+.+...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          214 IEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             TCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            9887654322111   00        01111122223445677889999999999999999999999999999988654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=4.3e-37  Score=283.73  Aligned_cols=211  Identities=16%  Similarity=0.237  Sum_probs=158.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.|.+|+.++++++||||+.++....    ..||||++|+ +...+......+++..++.++.|++.||.|||++ |+
T Consensus        63 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~-~i  141 (289)
T 3og7_A           63 QLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK-SI  141 (289)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            4577999999999999999998884333    3499999964 5555555667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+||+++.++.+||+|||+++.....      ....||+.|+|||.+.   +..++.++||||||+++|+|++|
T Consensus       142 ~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g  221 (289)
T 3og7_A          142 IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTG  221 (289)
T ss_dssp             CCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHS
T ss_pred             ccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHC
Confidence            99999999999999999999999998764321      2346899999999987   46688899999999999999999


Q ss_pred             CCCCCchhhHHhhhccc-cccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          162 KHIPPSHALDLIRDRNI-QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ..||............. .....+. ....+..++..+.+||.+||+.||.+|||+.++++.|+.+.+
T Consensus       222 ~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          222 QLPYSNINNRDQIIEMVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             SCTTSSCCCHHHHHHHHHHTSCCCC-TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CCCccccchHHHHHHHhcccccCcc-hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            99986532111100000 0001111 122345678899999999999999999999999999988754

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.5e-37  Score=292.13  Aligned_cols=203  Identities=16%  Similarity=0.161  Sum_probs=163.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||+
T Consensus        59 ~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~-giv  137 (361)
T 2yab_A           59 REEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK-KIA  137 (361)
T ss_dssp             HHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            478999999999999999999985444     34999998765555555567899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCC----CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           92 YHDLNAYRIVFDDDV----NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||+|||++.++    .+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       138 HrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~P  217 (361)
T 2yab_A          138 HFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  217 (361)
T ss_dssp             CCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred             cCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCC
Confidence            999999999998877    7999999999876543   345789999999999988999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+...............  .....++...+..+.+||.+||..||.+|||+.+++++
T Consensus       218 f~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          218 FLGDTKQETLANITAVSY--DFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             SCCSSHHHHHHHHHTTCC--CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCCCHHHHHHHHHhcCC--CCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            876432221111111000  00011123457789999999999999999999998763

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=7.1e-37  Score=286.03  Aligned_cols=200  Identities=18%  Similarity=0.190  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.+.+|+.++..++||||++++..++     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        49 ~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  127 (318)
T 1fot_A           49 QVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK-DI  127 (318)
T ss_dssp             CHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT-TE
T ss_pred             HHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4567889999999999999999985544     34999999765444444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.+|.+||+|||+++..... ...+||+.|+|||++.+..++.++|||||||++|||++|..||....
T Consensus       128 vHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  207 (318)
T 1fot_A          128 IYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN  207 (318)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             cccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999876544 35679999999999998899999999999999999999999987643


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ......    .+...  ...+|...+.++.++|.+||+.||.+||     ++.+++.+
T Consensus       208 ~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          208 TMKTYE----KILNA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             HHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHHHHH----HHHhC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence            222111    11111  1235667788999999999999999999     88888864

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.6e-37  Score=289.75  Aligned_cols=212  Identities=14%  Similarity=0.150  Sum_probs=166.4

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.++.++ +||||+.++....     .+||||+.+++..++......+++..++.++.||+.||.|||+. ||
T Consensus        48 ~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i  126 (330)
T 2izr_A           48 APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK-NL  126 (330)
T ss_dssp             SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            45799999999999 9999988884433     45999996667776665567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCC-----eEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHHH
Q 015733           91 LYHDLNAYRIVFDDDVN-----PRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~-----~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      +||||||+|||++.++.     +||+|||+++.....           ....||+.|+|||++.+..++.++|||||||+
T Consensus       127 iHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  206 (330)
T 2izr_A          127 IYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHM  206 (330)
T ss_dssp             ECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             eccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHH
Confidence            99999999999998887     999999999864322           24568999999999999889999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCC
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE  231 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~  231 (401)
                      +|||++|..||......... .....+.......   ......+ ++.+++..||+.||.+||++.+|.+.|..+.....
T Consensus       207 l~ell~g~~Pf~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~  284 (330)
T 2izr_A          207 FMYFLRGSLPWQGLKADTLK-ERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKG  284 (330)
T ss_dssp             HHHHHHSSCTTTTCCCSSHH-HHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCccccccccHH-HHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999998653111000 0000110000000   0112245 89999999999999999999999999987765543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.9e-37  Score=280.29  Aligned_cols=207  Identities=17%  Similarity=0.255  Sum_probs=169.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++.+++||||++++..+.     .+||||++++ +...+......+++..++.++.|++.||.|||++ |
T Consensus        48 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~  126 (269)
T 4hcu_A           48 SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA-C  126 (269)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4578999999999999999999885443     3499999865 5555555667799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||+++.....     ....+++.|+|||.+.+..++.++||||||+++|+|++ |..
T Consensus       127 i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~  206 (269)
T 4hcu_A          127 VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI  206 (269)
T ss_dssp             CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             eecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999865432     23345778999999998899999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||............     ........+...+..+.+++.+||+.||.+|||+.++++.|+.+.+
T Consensus       207 p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          207 PYENRSNSEVVEDI-----STGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             TTTTCCHHHHHHHH-----HTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH-----hcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence            87654322211111     1112233455667889999999999999999999999999998764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=3.6e-37  Score=284.64  Aligned_cols=206  Identities=15%  Similarity=0.196  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.++.+++||||++++..+.     .+||||+++++...+....+.+++..+..++.|++.||.|||++ ||
T Consensus        44 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i  122 (292)
T 3o0g_A           44 VPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR-NV  122 (292)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             cchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3478899999999999999999885443     34999999988887776678899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+.. ++.++|||||||++|+|+||..||
T Consensus       123 vH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~  202 (292)
T 3o0g_A          123 LHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999875432    3446799999999998765 799999999999999999998886


Q ss_pred             Cchhh-HHhhhcccc--------------cccc---------ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          166 PSHAL-DLIRDRNIQ--------------TLTD---------SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       166 ~~~~~-~~~~~~~~~--------------~~~~---------~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ..... .........              ...+         ...........+..+.+||.+||+.||.+|||+.++++
T Consensus       203 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          203 FPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            43211 100000000              0000         00011223456788999999999999999999999987


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      +
T Consensus       283 h  283 (292)
T 3o0g_A          283 H  283 (292)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-37  Score=290.95  Aligned_cols=200  Identities=16%  Similarity=0.220  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.+++.++||||++++..+.     .+||||++|++...+.. .+.+++..+..++.||+.||.|||+. ||+
T Consensus        53 ~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~~g~l~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~-giv  130 (336)
T 3h4j_B           53 HMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDYIVE-KKRMTEDEGRRFFQQIICAIEYCHRH-KIV  130 (336)
T ss_dssp             SHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            357899999999999999999985444     34999998777666543 45799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||++......   ...+||+.|+|||++.+..+ ++++|||||||++|+|++|..||..
T Consensus       131 H~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~  210 (336)
T 3h4j_B          131 HRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD  210 (336)
T ss_dssp             CCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBC
T ss_pred             ecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999875543   34578999999999988765 7899999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .....    ....+.. . ....|...+..+.+||.+||+.||.+|||+.+++++-+
T Consensus       211 ~~~~~----~~~~i~~-~-~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~  261 (336)
T 3h4j_B          211 EFIPN----LFKKVNS-C-VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPW  261 (336)
T ss_dssp             SSSTT----CBCCCCS-S-CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHH
T ss_pred             ccHHH----HHHHHHc-C-CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChh
Confidence            32211    1111111 1 12346677889999999999999999999999987543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=9.1e-37  Score=282.77  Aligned_cols=200  Identities=13%  Similarity=0.172  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+.++++++||||++++..+.       .+||||++++.+..+. ...++++..+..++.||+.||.|||++ |
T Consensus        80 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  157 (298)
T 2zv2_A           80 IEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP-TLKPLSEDQARFYFQDLIKGIEYLHYQ-K  157 (298)
T ss_dssp             -CHHHHHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS-CSSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            467999999999999999999885433       3499999976555444 346799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCc---cCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR---VTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~---~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||.+.+..   ++.++|||||||++|+|++|.
T Consensus       158 ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~  237 (298)
T 2zv2_A          158 IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQ  237 (298)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSS
T ss_pred             eeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCC
Confidence            999999999999999999999999999876543    2356899999999998754   477899999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||............    .........+..++.++.+||.+||+.||.+|||+.+++++
T Consensus       238 ~pf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          238 CPFMDERIMCLHSKI----KSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             CSSCCSSHHHHHHHH----HHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             CCCCCccHHHHHHHH----hcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence            998764322211111    11111111234567889999999999999999999999763

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=8.2e-37  Score=286.64  Aligned_cols=209  Identities=24%  Similarity=0.431  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+..   ...++++..+..++.|++.||.|||++.
T Consensus        72 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~  151 (326)
T 3uim_A           72 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC  151 (326)
T ss_dssp             CHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            37899999999999999999885443     3499999864 5444443   2345999999999999999999999974


Q ss_pred             --CceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 --RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 --~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                        |++||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+..++.++|||||||++|+|+||
T Consensus       152 ~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  231 (326)
T 3uim_A          152 DPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITG  231 (326)
T ss_dssp             SSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHC
T ss_pred             CCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhC
Confidence              8999999999999999999999999999875432     223589999999999988999999999999999999999


Q ss_pred             CCCCCchhh-------------HHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHAL-------------DLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..||.....             ..........+.+......++...+..+.+++.+||+.||.+|||+.+|++.|+..
T Consensus       232 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          232 QRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             CCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             CCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            999853211             11122233444455555667888999999999999999999999999999999864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.2e-37  Score=282.41  Aligned_cols=210  Identities=21%  Similarity=0.279  Sum_probs=169.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++++++||||+.++..+.      ..||||+++ ++...+......+++..++.++.|++.||.|||++ 
T Consensus        65 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-  143 (298)
T 3pls_A           65 QVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ-  143 (298)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3578999999999999999999884432      359999975 56666665577899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      |++||||||+||+++.++.+||+|||+++.....        ....+++.|+|||.+.+..++.++||||||+++|+|+|
T Consensus       144 ~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  223 (298)
T 3pls_A          144 KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT  223 (298)
T ss_dssp             TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhh
Confidence            9999999999999999999999999999754322        23456789999999999899999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |..||......    ...............+..++..+.+++.+||+.||.+|||+.++++.|+.+....
T Consensus       224 g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          224 RGAPPYRHIDP----FDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             TSCCTTTTSCG----GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCccCCH----HHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            77665433211    1111111122233445667889999999999999999999999999999886643

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=2.7e-37  Score=283.87  Aligned_cols=207  Identities=19%  Similarity=0.273  Sum_probs=159.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||++++..+.    .+||||+++ ++...+......+++..++.++.|++.||.|||++ |+
T Consensus        59 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  137 (281)
T 1mp8_A           59 VREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK-RF  137 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3578999999999999999999885433    349999996 45555554556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+|||++.++.+||+|||+++......     ...+++.|+|||.+.+..++.++||||||+++|||++ |..|
T Consensus       138 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p  217 (281)
T 1mp8_A          138 VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP  217 (281)
T ss_dssp             CCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999998754432     2345678999999998889999999999999999997 8888


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |........    ...+ ........+..++..+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus       218 f~~~~~~~~----~~~i-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          218 FQGVKNNDV----IGRI-ENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             TTTCCGGGH----HHHH-HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCcCCHHHH----HHHH-HcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            765322111    1111 1112234566788899999999999999999999999999987653

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=4.8e-37  Score=280.11  Aligned_cols=208  Identities=15%  Similarity=0.216  Sum_probs=168.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++.+++||||++++..+.     ..||||++|+ +...+......+++..++.++.|++.||.|||++ |
T Consensus        46 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  124 (268)
T 3sxs_A           46 SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH-Q  124 (268)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999985444     3499999865 5555544456699999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||++.......     ...+|+.|+|||.+.+..++.++||||||+++|+|+| |..
T Consensus       125 i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~  204 (268)
T 3sxs_A          125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKM  204 (268)
T ss_dssp             EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCC
T ss_pred             eecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999998755432     2335678999999998899999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||...........     .........+...+..+.+++.+||+.||.+|||+.++++.|+.+.+.
T Consensus       205 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          205 PYDLYTNSEVVLK-----VSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             TTTTSCHHHHHHH-----HHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             CccccChHHHHHH-----HHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            8765432211111     111112233455678899999999999999999999999999988754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=3.9e-37  Score=301.45  Aligned_cols=208  Identities=18%  Similarity=0.308  Sum_probs=168.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-c-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-Q-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++++++||||++++... .     .+||||+++ ++...+... ...+++..++.++.||+.||.|||++
T Consensus       229 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~  308 (450)
T 1k9a_A          229 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN  308 (450)
T ss_dssp             TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999988432 2     349999986 455555433 33479999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                       |++||||||+|||++.++.+||+|||+++..... ....+++.|+|||++.+..++.++|||||||++|||+| |..||
T Consensus       309 -~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~  387 (450)
T 1k9a_A          309 -NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY  387 (450)
T ss_dssp             -TEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             -CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence             9999999999999999999999999999865433 23356789999999999999999999999999999998 88887


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ......     .....+....+...|..++..+.+||.+||+.||.+|||+.+++..|+.+...
T Consensus       388 ~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          388 PRIPLK-----DVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             TTSCTT-----THHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCHH-----HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            653211     11111222234456778899999999999999999999999999999887653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=5.5e-37  Score=300.82  Aligned_cols=208  Identities=18%  Similarity=0.274  Sum_probs=170.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++||||++++....    .+||||+++ ++...+... ...+++..++.++.||+.||.|||++ |
T Consensus       226 ~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~  304 (454)
T 1qcf_A          226 SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-N  304 (454)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4678999999999999999999884433    349999986 455555432 24689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      |+||||||+|||++.++.+||+|||+++.....     ....+++.|+|||++..+.++.++|||||||++|||+| |..
T Consensus       305 ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~  384 (454)
T 1qcf_A          305 YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI  384 (454)
T ss_dssp             CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCC
Confidence            999999999999999999999999999875432     22345678999999998899999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.+.......     ..+....+...|..++.++.+||.+||+.||.+|||+.+|+..|+.+...
T Consensus       385 P~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          385 PYPGMSNPEVI-----RALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             SSTTCCHHHHH-----HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             CCCCCCHHHHH-----HHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence            88654322111     11112233345677889999999999999999999999999999988654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=6.4e-37  Score=290.10  Aligned_cols=200  Identities=15%  Similarity=0.155  Sum_probs=165.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      +.+.+.+|+.++..++||||+.++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        84 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i  162 (350)
T 1rdq_E           84 QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL-DL  162 (350)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4567899999999999999999885544     34999998754444444446799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.++.+||+|||+++..... ...+||+.|+|||++.+..++.++|||||||++|||++|..||....
T Consensus       163 vHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  242 (350)
T 1rdq_E          163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ  242 (350)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC
Confidence            99999999999999999999999999876544 35679999999999999899999999999999999999999987643


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      .......    +...  ...+|..++.++.+||.+||+.||.+||+     +.+|+.+
T Consensus       243 ~~~~~~~----i~~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          243 PIQIYEK----IVSG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             HHHHHHH----HHHC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHHHHHH----HHcC--CCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence            2222111    1111  12356677889999999999999999998     8888764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.4e-37  Score=289.86  Aligned_cols=211  Identities=16%  Similarity=0.199  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCc-ccccccC-----CCCCCCHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLT-FSNNFSG-----ETQPMKWAMRLRVALHIA   78 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~-l~~~~~~-----~~~~l~~~~~~~i~~qi~   78 (401)
                      ..+.|.+|+.++++++||||+.++..+.           ..||||++++ +...+..     ....+++..++.++.||+
T Consensus        68 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~  147 (323)
T 3qup_A           68 DIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIA  147 (323)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHH
Confidence            3578999999999999999998884332           4599999975 4433321     233699999999999999


Q ss_pred             HHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhH
Q 015733           79 EALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFG  152 (401)
Q Consensus        79 ~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  152 (401)
                      .||.|||++ ||+||||||+|||++.++.+||+|||+++......      ...+++.|+|||.+.+..++.++||||||
T Consensus       148 ~al~~LH~~-~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  226 (323)
T 3qup_A          148 CGMEYLSSR-NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFG  226 (323)
T ss_dssp             HHHHHHHHT-TCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHcC-CcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHH
Confidence            999999999 99999999999999999999999999998754332      23456789999999998999999999999


Q ss_pred             HHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCC
Q 015733          153 TLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE  231 (401)
Q Consensus       153 ~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~  231 (401)
                      |++|+|+| |..||.+.......    ..+. .......+..++..+.+|+.+||+.||.+|||+.++++.|+.+.....
T Consensus       227 ~il~ell~~g~~p~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          227 VTMWEIMTRGQTPYAGIENAEIY----NYLI-GGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             HHHHHHHTTSCCTTTTCCGGGHH----HHHH-TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCCccccChHHHH----HHHh-cCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence            99999999 78887653221111    1111 111234466778899999999999999999999999999999887654


Q ss_pred             C
Q 015733          232 V  232 (401)
Q Consensus       232 ~  232 (401)
                      .
T Consensus       302 ~  302 (323)
T 3qup_A          302 V  302 (323)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=8.8e-37  Score=278.72  Aligned_cols=204  Identities=19%  Similarity=0.211  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC--
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER--   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~--   89 (401)
                      .+.|.+|+.++..++||||++++..+.     .+||||++|+.+..+.. ...+++..++.++.|++.||.|||++ |  
T Consensus        50 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~-~~~  127 (271)
T 3dtc_A           50 IENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS-GKRIPPDILVNWAVQIARGMNYLHDE-AIV  127 (271)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHS-SSS
T ss_pred             HHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            467899999999999999999884433     34999999765555443 45799999999999999999999999 8  


Q ss_pred             -ceeccCCCCCEEECC--------CCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           90 -ALYHDLNAYRIVFDD--------DVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        90 -ivH~dlk~~Nill~~--------~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                       ++||||||+||+++.        ++.+||+|||++......  ....||+.|+|||.+.+..++.++||||||+++|+|
T Consensus       128 ~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  207 (271)
T 3dtc_A          128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWEL  207 (271)
T ss_dssp             CCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred             ceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHH
Confidence             899999999999986        778999999999865443  245689999999999988899999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      +||+.||.........    ............+..++..+.+++.+||+.||.+|||+.++++.|+.+
T Consensus       208 ~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          208 LTGEVPFRGIDGLAVA----YGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHCCCTTTTSCHHHHH----HHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             HhCCCCCCCCCHHHHH----HhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            9999998654322111    111112223345677788999999999999999999999999999764

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=296.88  Aligned_cols=209  Identities=19%  Similarity=0.265  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC------CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG------ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~------~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ....|.+|+.++.+++||||++++..+.     .+||||++|+ +...+..      ....+++..++.++.||+.||.|
T Consensus       117 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  196 (367)
T 3l9p_A          117 DELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY  196 (367)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999885443     3499999864 4444432      22469999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCC---CeEEecccCcccc------CCCCccccccccCCccccccCccCCCCcchhhHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDV---NPRLSCFGLMKNS------RDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~---~~kl~Dfg~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      ||++ ||+||||||+|||++.++   .+||+|||+++..      .......+|+.|+|||++.+..++.++|||||||+
T Consensus       197 LH~~-~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~i  275 (367)
T 3l9p_A          197 LEEN-HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL  275 (367)
T ss_dssp             HHHT-TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHhC-CeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHH
Confidence            9999 999999999999999555   5999999998753      12234557889999999998999999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      +|||+| |..||.........     ..+........+..++..+.+||.+||+.||.+|||+.+|++.|+.+....
T Consensus       276 l~ellt~g~~pf~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          276 LWEIFSLGYMPYPSKSNQEVL-----EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             HHHHHTTSCCSSTTCCHHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHHHhCCCCCCCCCCHHHHH-----HHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            999998 88887654322111     111112223446677888999999999999999999999999999887653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.6e-37  Score=292.90  Aligned_cols=207  Identities=18%  Similarity=0.277  Sum_probs=164.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCc-ccccccCCC--------------------------
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSGET--------------------------   62 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~~~--------------------------   62 (401)
                      .+.|.+|+.++.++ +||||++++..+.      ..||||++|+ +...+....                          
T Consensus        69 ~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
T 3vhe_A           69 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVD  148 (359)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchh
Confidence            46799999999999 7899999984432      3489999975 444443221                          


Q ss_pred             ---------------------------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEC
Q 015733           63 ---------------------------------------QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFD  103 (401)
Q Consensus        63 ---------------------------------------~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~  103 (401)
                                                             ..+++..++.++.||+.||.|||++ ||+||||||+|||++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~-~ivH~Dikp~NIll~  227 (359)
T 3vhe_A          149 LKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS  227 (359)
T ss_dssp             -----------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC
T ss_pred             hhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEc
Confidence                                                   2289999999999999999999999 999999999999999


Q ss_pred             CCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhc
Q 015733          104 DDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDR  176 (401)
Q Consensus       104 ~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~  176 (401)
                      .++.+||+|||+++.....      ....+|+.|+|||++.+..++.++|||||||++|||+| |..||.+.....    
T Consensus       228 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----  303 (359)
T 3vhe_A          228 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE----  303 (359)
T ss_dssp             GGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH----
T ss_pred             CCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH----
Confidence            9999999999999865332      22356889999999999999999999999999999998 988876532111    


Q ss_pred             cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .....+........+..++.++.+++.+||+.||.+|||+.+|+++|+.+..
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          304 EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            1111112222334566678899999999999999999999999999987754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.8e-37  Score=286.61  Aligned_cols=204  Identities=16%  Similarity=0.151  Sum_probs=162.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        57 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~-~i  135 (326)
T 2y0a_A           57 SREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL-QI  135 (326)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3578999999999999999999885444     34999998765554445567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCC----CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFDDDV----NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+|||++.++    .+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       136 vH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~  215 (326)
T 2y0a_A          136 AHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  215 (326)
T ss_dssp             ECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC
T ss_pred             EcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcC
Confidence            9999999999999887    7999999999876433   34568999999999998899999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.+.............  ........+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       216 pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          216 PFLGDTKQETLANVSAV--NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             SSCCSSHHHHHHHHHHT--CCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHhc--CCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            98654322111111000  0000111123456789999999999999999999999874

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=289.28  Aligned_cols=208  Identities=13%  Similarity=0.188  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.    ..|+||+.+ ++...+......+++..++.++.||+.||.|||++ ||
T Consensus        60 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~i  138 (327)
T 3lzb_A           60 ANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR-RL  138 (327)
T ss_dssp             CHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC-CC
Confidence            4578999999999999999999884433    348999985 56666655567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      +||||||+|||++.++.+||+|||+++......      ...+|+.|+|||.+.+..++.++|||||||++|||++ |..
T Consensus       139 vH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~  218 (327)
T 3lzb_A          139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK  218 (327)
T ss_dssp             CCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999998754321      2345778999999999999999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.......     ....+........+..++.++.+||.+||+.||.+|||+.++++.|..+...
T Consensus       219 p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          219 PYDGIPASE-----ISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             TTTTCCGGG-----HHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCHHH-----HHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            876532211     1122222223345667888999999999999999999999999999988754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=291.82  Aligned_cols=199  Identities=16%  Similarity=0.191  Sum_probs=161.8

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+..|..++..+ +||||++++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ |
T Consensus        66 ~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-g  144 (353)
T 3txo_A           66 DVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK-G  144 (353)
T ss_dssp             THHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            456788999999988 7999999986555     34999999765554444556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.++.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       145 ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf  224 (353)
T 3txo_A          145 IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPF  224 (353)
T ss_dssp             CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             CcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCC
Confidence            99999999999999999999999999986332    23467999999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH------HHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP------RSLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~------~~vl~  221 (401)
                      .............    ..  ...+|...+..+.+||.+||+.||.+||++      .+++.
T Consensus       225 ~~~~~~~~~~~i~----~~--~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          225 EAENEDDLFEAIL----ND--EVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             CCSSHHHHHHHHH----HC--CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             CCCCHHHHHHHHH----cC--CCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            7654332221111    11  123566678889999999999999999998      77776

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=8e-37  Score=281.79  Aligned_cols=205  Identities=13%  Similarity=0.221  Sum_probs=161.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++++++||||++++..+.     .+||||+++++...+......+++..+..++.||+.||.|||++ ||+
T Consensus        44 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~  122 (288)
T 1ob3_A           44 PSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR-RVL  122 (288)
T ss_dssp             CHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             chhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            478899999999999999999985444     34999999988887776667899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+. .++.++|||||||++|+|+||..||.
T Consensus       123 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  202 (288)
T 1ob3_A          123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFP  202 (288)
T ss_dssp             CSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998865432    234679999999999764 58999999999999999999999986


Q ss_pred             chhhHHhhhcccc-----------cc-----cccc-------ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQ-----------TL-----TDSC-------LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~-----------~~-----~~~~-------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +............           ..     .++.       ....+...++.++.+||.+||+.||.+|||+.+++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          203 GVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             CSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            5422111000000           00     0000       0011234567889999999999999999999999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=294.78  Aligned_cols=204  Identities=12%  Similarity=0.057  Sum_probs=163.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||++++..+.     .+||||++|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        53 ~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~-gi  131 (444)
T 3soa_A           53 DHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM-GV  131 (444)
T ss_dssp             HHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3567899999999999999999985444     34999999754433333456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEEC---CCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFD---DDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~---~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+|||++   .++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       132 vHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~  211 (444)
T 3soa_A          132 VHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYP  211 (444)
T ss_dssp             BCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCC
Confidence            9999999999998   5678999999999876543    23578999999999998899999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.+...............  .........++.++.+||.+||+.||.+|||+.+++++
T Consensus       212 Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          212 PFWDEDQHRLYQQIKAGAY--DFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             SCCCSSHHHHHHHHHHTCC--CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCccHHHHHHHHHhCCC--CCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            9876533222111111110  01111223567889999999999999999999999884

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=9.4e-37  Score=286.03  Aligned_cols=204  Identities=12%  Similarity=0.056  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.+++.++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||+
T Consensus        49 ~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~-giv  127 (323)
T 3tki_A           49 PENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI-GIT  127 (323)
T ss_dssp             --CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            467899999999999999999885444     35999999765555555667799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.+..+ +.++|||||||++|+|+||..|
T Consensus       128 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p  207 (323)
T 3tki_A          128 HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP  207 (323)
T ss_dssp             CSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999764321      24578999999999987665 7799999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |.........   ................++..+.+||.+||+.||.+|||+.++++.-+
T Consensus       208 f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~  264 (323)
T 3tki_A          208 WDQPSDSCQE---YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW  264 (323)
T ss_dssp             CSSSCTTSHH---HHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred             CCCCchHHHH---HHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence            8653211000   00111111111123456788999999999999999999999987543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=293.04  Aligned_cols=208  Identities=18%  Similarity=0.263  Sum_probs=169.0

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~i   73 (401)
                      ....|.+|+.++.++ +||||++++..+.     .+||||++|+ +...+...               ...+++..++.+
T Consensus       117 ~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i  196 (382)
T 3tt0_A          117 DLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC  196 (382)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHH
Confidence            347799999999999 9999999985444     3499999864 44444322               246999999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCc
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      +.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.+..++.++|
T Consensus       197 ~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  275 (382)
T 3tt0_A          197 AYQVARGMEYLASK-KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD  275 (382)
T ss_dssp             HHHHHHHHHHHHHT-TCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHhC-CEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhH
Confidence            99999999999999 9999999999999999999999999999875432      2234678899999999989999999


Q ss_pred             chhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          148 MYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       148 v~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||||||++|+|+| |..||........     ...+........+..++.++.+||.+||+.||.+|||+.+|++.|+.+
T Consensus       276 iwslG~il~ellt~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  350 (382)
T 3tt0_A          276 VWSFGVLLWEIFTLGGSPYPGVPVEEL-----FKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  350 (382)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCHHHH-----HHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            9999999999999 8888765432221     111222223345667788999999999999999999999999999988


Q ss_pred             ccC
Q 015733          227 QKD  229 (401)
Q Consensus       227 ~~~  229 (401)
                      ...
T Consensus       351 ~~~  353 (382)
T 3tt0_A          351 VAL  353 (382)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.1e-36  Score=277.66  Aligned_cols=207  Identities=18%  Similarity=0.202  Sum_probs=167.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGET-QPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..+.|.+|+.++++++||||++++..+.       ..||||++| ++...+.... .++++..++.++.|++.||.|||+
T Consensus        50 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  129 (271)
T 3kmu_A           50 KSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT  129 (271)
T ss_dssp             HHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            3467999999999999999999984432       359999996 5555554432 369999999999999999999999


Q ss_pred             CCC--ceeccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCC---CCcchhhHHHHHHHHhC
Q 015733           87 KER--ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTP---ESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        87 ~~~--ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~Dv~slG~~l~el~tg  161 (401)
                      + |  ++||||||+||+++.++.++|+|||++..... ....+|+.|+|||.+.+...+.   ++|||||||++|||+||
T Consensus       130 ~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~-~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g  207 (271)
T 3kmu_A          130 L-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS-PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTR  207 (271)
T ss_dssp             S-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC-TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHC
T ss_pred             C-CCceecCCCccceEEEcCCcceeEEeccceeeecc-cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhC
Confidence            9 8  99999999999999999999999988765332 3456799999999998765544   79999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ..||........    ...+.........+..++..+.+++.+||+.||.+|||+.++++.|+.+.+
T Consensus       208 ~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          208 EVPFADLSNMEI----GMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             SCTTTTSCHHHH----HHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             CCCccccChHHH----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            999865432211    112222223345667788899999999999999999999999999988754

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=290.32  Aligned_cols=202  Identities=14%  Similarity=0.178  Sum_probs=163.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++.+++||||+.++..++     .+||||+.|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        58 ~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~-gi  136 (384)
T 4fr4_A           58 EVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ-RI  136 (384)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3467899999999999999999985554     34999999876655555667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.++.+||+|||+++.....   ...+||+.|+|||++.+   ..++.++|||||||++|||++|..|
T Consensus       137 vHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~P  216 (384)
T 4fr4_A          137 IHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP  216 (384)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             eeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCC
Confidence            99999999999999999999999999875443   35678999999999974   4589999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-HHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-PRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-~~~vl~  221 (401)
                      |......... .....+.  .....+|..++..+.+||.+||+.||.+||+ +.+|+.
T Consensus       217 f~~~~~~~~~-~~~~~~~--~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          217 YHIRSSTSSK-EIVHTFE--TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             SCCCTTSCHH-HHHHHHH--HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             CCCCCCccHH-HHHHHHh--hcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            8643211000 0001111  1123456778889999999999999999998 777765

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.8e-37  Score=287.91  Aligned_cols=212  Identities=15%  Similarity=0.176  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      +...+..|+.++.+++||||++++..+.         .+||||++++ +...+.  ...+++..++.++.|++.||.|||
T Consensus        61 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~qi~~al~~LH  138 (322)
T 3soc_A           61 QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK--ANVVSWNELCHIAETMARGLAYLH  138 (322)
T ss_dssp             HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHH
Confidence            4556777999999999999999884332         3599999874 544443  245999999999999999999999


Q ss_pred             cCC---------CceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-----CccCCC
Q 015733           86 SKE---------RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-----GRVTPE  145 (401)
Q Consensus        86 ~~~---------~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-----~~~~~~  145 (401)
                      +..         ||+||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.+     ..++.+
T Consensus       139 ~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  218 (322)
T 3soc_A          139 EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLR  218 (322)
T ss_dssp             CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHH
T ss_pred             hhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCcc
Confidence            863         8999999999999999999999999999764432      23468999999999986     356778


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHH-------hh-hcc---c-cccccccccCCC-----ChHHHHHHHHHHHHhccc
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDL-------IR-DRN---I-QTLTDSCLEGQF-----SSDEGTELVRLASRCLQY  208 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~-------~~-~~~---~-~~~~~~~~~~~~-----~~~~~~~l~~li~~cl~~  208 (401)
                      +|||||||++|||+||+.||.+.....       .. ...   . ..+......+..     +...+..+.+||.+||+.
T Consensus       219 ~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~  298 (322)
T 3soc_A          219 IDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDH  298 (322)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCS
T ss_pred             chhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccC
Confidence            999999999999999999885421100       00 000   0 001111111111     234577799999999999


Q ss_pred             CCCCCCCHHHHHHHHHccccC
Q 015733          209 EPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       209 ~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.+|||+.+|++.|+.+.+.
T Consensus       299 dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          299 DAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHH
T ss_pred             ChhhCcCHHHHHHHHHHHHHH
Confidence            999999999999999987653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.1e-36  Score=282.39  Aligned_cols=208  Identities=14%  Similarity=0.139  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhh--hCCCeEEEeeeec---------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIAS--MSSFILLAVIFMF---------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~--~~h~niv~~~~~~---------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+..|..++..  ++||||++++...         ..+||||++++.+..+. ....+++..++.++.|++.||.|||
T Consensus        44 ~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l-~~~~~~~~~~~~i~~~i~~~l~~lH  122 (301)
T 3q4u_A           44 EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYL-QLTTLDTVSCLRIVLSIASGLAHLH  122 (301)
T ss_dssp             HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHH-TTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHH-hhcccCHHHHHHHHHHHHHHHHHHH
Confidence            4566777777766  8999999987431         13599999975444333 3457999999999999999999999


Q ss_pred             --------cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC------ccC
Q 015733           86 --------SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG------RVT  143 (401)
Q Consensus        86 --------~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~------~~~  143 (401)
                              +. ||+||||||+|||++.++.+||+|||+++.....        ....||+.|+|||++.+.      .++
T Consensus       123 ~~~~~~~~~~-~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  201 (301)
T 3q4u_A          123 IEIFGTQGKP-AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSY  201 (301)
T ss_dssp             SCBCSTTCBC-EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHH
T ss_pred             HhhhhccCCC-CeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCC
Confidence                    88 9999999999999999999999999998764332        223689999999999876      556


Q ss_pred             CCCcchhhHHHHHHHHhC----------CCCCCchhhHHhhhccccc-cccccccCCC-----ChHHHHHHHHHHHHhcc
Q 015733          144 PESVMYSFGTLLLDLLSG----------KHIPPSHALDLIRDRNIQT-LTDSCLEGQF-----SSDEGTELVRLASRCLQ  207 (401)
Q Consensus       144 ~~~Dv~slG~~l~el~tg----------~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~li~~cl~  207 (401)
                      .++|||||||++|||+||          ..||............... +.........     +..++..+.+|+.+||+
T Consensus       202 ~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~  281 (301)
T 3q4u_A          202 KRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWY  281 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCC
T ss_pred             chhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhh
Confidence            799999999999999999          7776442111000000000 0011111122     34578899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHcc
Q 015733          208 YEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~l~~~  226 (401)
                      .||.+|||+.+|++.|+.+
T Consensus       282 ~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          282 QNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             SSGGGSCCHHHHHHHHHHH
T ss_pred             cChhhCCCHHHHHHHHhcc
Confidence            9999999999999999865

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=8.1e-37  Score=284.92  Aligned_cols=207  Identities=16%  Similarity=0.239  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-----------------------CCCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-----------------------TQPMK   66 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-----------------------~~~l~   66 (401)
                      ..+.|.+|+.++++++||||++++..+.     .+||||++|+ +...+...                       ...++
T Consensus        69 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (314)
T 2ivs_A           69 ELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALT  148 (314)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEEC
T ss_pred             HHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcC
Confidence            3477999999999999999999885443     3499999954 44444321                       23489


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccC
Q 015733           67 WAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTG  140 (401)
Q Consensus        67 ~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~  140 (401)
                      +..++.++.||+.||.|||++ |++||||||+||+++.++.+||+|||+++......      ...+++.|+|||.+.+.
T Consensus       149 ~~~~~~i~~qi~~~l~~lH~~-~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  227 (314)
T 2ivs_A          149 MGDLISFAWQISQGMQYLAEM-KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDH  227 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCC
Confidence            999999999999999999999 99999999999999999999999999998754332      23457889999999988


Q ss_pred             ccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          141 RVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       141 ~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .++.++|||||||++|+|+| |..||.......     ....+........+..++..+.++|.+||+.||.+|||+.++
T Consensus       228 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l  302 (314)
T 2ivs_A          228 IYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER-----LFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADI  302 (314)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            89999999999999999999 888876543211     111122222334566788899999999999999999999999


Q ss_pred             HHHHHcccc
Q 015733          220 VTALVTLQK  228 (401)
Q Consensus       220 l~~l~~~~~  228 (401)
                      ++.|+.+..
T Consensus       303 ~~~l~~~~~  311 (314)
T 2ivs_A          303 SKDLEKMMV  311 (314)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=9.3e-37  Score=298.97  Aligned_cols=209  Identities=20%  Similarity=0.272  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++++++||||++++....    .+||||++++ +...+.. ....+++..++.++.||+.||.|||++ |
T Consensus       222 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~  300 (452)
T 1fmk_A          222 SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-N  300 (452)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3578999999999999999999884433    3499999864 5555443 235699999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      |+||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.++.++.++|||||||++|||+| |..
T Consensus       301 ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~  380 (452)
T 1fmk_A          301 YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV  380 (452)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998754321     2345678999999998999999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ||.+.......     ..+....+...|..++..+.+||.+||+.||.+|||+.+|+..|+.+....
T Consensus       381 P~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          381 PYPGMVNREVL-----DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             SSTTCCHHHHH-----HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CCCCCCHHHHH-----HHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence            87654322111     111122334556778899999999999999999999999999999886543

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=3.6e-37  Score=291.58  Aligned_cols=215  Identities=14%  Similarity=0.101  Sum_probs=164.9

Q ss_pred             hhhhhhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 015733           12 MIRLQSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        12 ~~~~~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      +.++....+++|+..+..++||||+.++..+.         .+||||+.+++...+. ..+.+++..++.++.||+.||.
T Consensus        87 ~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~  165 (345)
T 2v62_A           87 YQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISG-QNGTFKKSTVLQLGIRMLDVLE  165 (345)
T ss_dssp             HHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECEEEEHHHHCB-GGGBCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEEEEEEeccCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence            34456678999999999999999998884322         3499999444555444 4448999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCC--CeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcch
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDV--NPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~--~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      |||++ ||+||||||+|||++.++  .+||+|||+++.....           ....||+.|+|||++.+..++.++|||
T Consensus       166 ~LH~~-~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  244 (345)
T 2v62_A          166 YIHEN-EYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVE  244 (345)
T ss_dssp             HHHHT-TEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHH
T ss_pred             HHHhC-CeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHH
Confidence            99999 999999999999998887  9999999999764321           234689999999999988899999999


Q ss_pred             hhHHHHHHHHhCCCCCCchhhHHhhhcccc-cc---ccccccC-CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          150 SFGTLLLDLLSGKHIPPSHALDLIRDRNIQ-TL---TDSCLEG-QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       150 slG~~l~el~tg~~p~~~~~~~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ||||++|||+||..||.............. ..   ....... ..+..++.++.++|.+||+.||.+|||+.+|++.|+
T Consensus       245 slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~  324 (345)
T 2v62_A          245 ILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILN  324 (345)
T ss_dssp             HHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHh
Confidence            999999999999999854211111000000 00   0000000 001156778999999999999999999999999998


Q ss_pred             cccc
Q 015733          225 TLQK  228 (401)
Q Consensus       225 ~~~~  228 (401)
                      .+.-
T Consensus       325 ~~~~  328 (345)
T 2v62_A          325 PHGI  328 (345)
T ss_dssp             TTCC
T ss_pred             ccCC
Confidence            7643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=6.2e-37  Score=289.38  Aligned_cols=208  Identities=18%  Similarity=0.268  Sum_probs=167.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC-----------------------CCCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE-----------------------TQPMK   66 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~-----------------------~~~l~   66 (401)
                      ..+.|.+|+.++.+++||||++++..+.     .+||||++++ +...+...                       ..+++
T Consensus        93 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (343)
T 1luf_A           93 MQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS  172 (343)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCC
Confidence            3578999999999999999999885443     3499999964 44444321                       26799


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccC
Q 015733           67 WAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTG  140 (401)
Q Consensus        67 ~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~  140 (401)
                      +..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.+.
T Consensus       173 ~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  251 (343)
T 1luf_A          173 CAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYN  251 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccC
Confidence            999999999999999999999 9999999999999999999999999998764322      234568899999999988


Q ss_pred             ccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          141 RVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       141 ~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .++.++||||||+++|+|+| |..||.+........    .+.. ......+..++..+.+||.+||+.||.+|||+.++
T Consensus       252 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~  326 (343)
T 1luf_A          252 RYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIY----YVRD-GNILACPENCPLELYNLMRLCWSKLPADRPSFCSI  326 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH----HHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHH----HHhC-CCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence            99999999999999999999 888876543222111    1111 11223566778899999999999999999999999


Q ss_pred             HHHHHccccC
Q 015733          220 VTALVTLQKD  229 (401)
Q Consensus       220 l~~l~~~~~~  229 (401)
                      ++.|+.+...
T Consensus       327 ~~~L~~~~~~  336 (343)
T 1luf_A          327 HRILQRMCER  336 (343)
T ss_dssp             HHHHHHTTC-
T ss_pred             HHHHHHHHhh
Confidence            9999988764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.3e-36  Score=301.22  Aligned_cols=207  Identities=18%  Similarity=0.279  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..++|.+|+.++++++||||++++..+.     .+||||+++ ++...+.. ....+++..++.++.||+.||.|||++ 
T Consensus       259 ~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-  337 (495)
T 1opk_A          259 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-  337 (495)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            4578999999999999999999884433     349999995 45555543 346799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ||+||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.+..++.++|||||||++|||+| |.
T Consensus       338 ~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~  417 (495)
T 1opk_A          338 NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM  417 (495)
T ss_dssp             TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCC
Confidence            99999999999999999999999999998754332     2234678999999998899999999999999999999 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .||.+....     .....+....+...|..++..+.+||.+||+.||.+|||+.+|++.|+.+..
T Consensus       418 ~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          418 SPYPGIDLS-----QVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             CSSTTCCGG-----GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             CCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence            887653221     1112222333445677888999999999999999999999999999998754

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.6e-37  Score=291.36  Aligned_cols=209  Identities=18%  Similarity=0.246  Sum_probs=160.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++++++||||+.++.. ..     .+||||+++ ++...+......+++..++.++.||+.||.|||++ 
T Consensus       133 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-  211 (373)
T 3c1x_A          133 EVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK-  211 (373)
T ss_dssp             HHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            35789999999999999999998843 22     349999996 56666655667799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||+||||||+|||++.++.+||+|||+++.....        ....+++.|+|||.+.+..++.++|||||||++|||+|
T Consensus       212 ~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt  291 (373)
T 3c1x_A          212 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT  291 (373)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999864322        12345778999999999999999999999999999999


Q ss_pred             C-CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          161 G-KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       161 g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      | .+||.....     ......+........|..++..+.++|.+||+.||.+|||+.++++.|+.+....
T Consensus       292 ~~~~p~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~  357 (373)
T 3c1x_A          292 RGAPPYPDVNT-----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  357 (373)
T ss_dssp             TSCCSCTTSCS-----SCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCH-----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            5 445433211     0111111111122345667889999999999999999999999999999887643

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=9.2e-37  Score=280.27  Aligned_cols=207  Identities=18%  Similarity=0.242  Sum_probs=166.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++||||++++..+.    ..||||+++ ++...+......+++..+..++.|++.||.|||++ |+
T Consensus        56 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  134 (281)
T 3cc6_A           56 NKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI-NC  134 (281)
T ss_dssp             HHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4578999999999999999999885444    349999996 45555544556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||+++.++.+||+|||++.......     ...+++.|+|||.+.+..++.++||||||+++|+|+| |..|
T Consensus       135 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p  214 (281)
T 3cc6_A          135 VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQP  214 (281)
T ss_dssp             CCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             ccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999988754432     2345788999999998889999999999999999998 9988


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |........     ...+........+..++..+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus       215 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          215 FFWLENKDV-----IGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             TTTSCGGGH-----HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccCChHHH-----HHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            754321111     11111112233456678889999999999999999999999999987643

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.2e-36  Score=292.05  Aligned_cols=202  Identities=14%  Similarity=0.179  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.+..|..++.++ +||||++++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        96 ~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~-gi  174 (396)
T 4dc2_A           96 IDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER-GI  174 (396)
T ss_dssp             CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            45688899999887 8999999986555     34999999765554444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       175 vHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~  254 (396)
T 4dc2_A          175 IYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  254 (396)
T ss_dssp             BCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred             EeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999986322    235679999999999999999999999999999999999999985


Q ss_pred             chhhHHhhhc-----cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH------HHHHH
Q 015733          167 SHALDLIRDR-----NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP------RSLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~------~~vl~  221 (401)
                      ..........     ....+...  ...+|..++.++.+||.+||+.||.+||++      .+|+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~  318 (396)
T 4dc2_A          255 IVGSSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  318 (396)
T ss_dssp             TTTC------CCHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHhcc--ccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence            4211110000     01111111  234677788999999999999999999985      56665

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=5e-37  Score=288.34  Aligned_cols=214  Identities=18%  Similarity=0.224  Sum_probs=169.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++.+++||||+.++..+.       .+||||++|+ +...+......+++..++.++.|++.||.|||++
T Consensus        67 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~  146 (327)
T 3lxl_A           67 QQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR  146 (327)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3467999999999999999999874321       3599999865 5555444356799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       ||+||||||+|||++.++.+||+|||++.......       ...+|+.|+|||++.+..++.++||||||+++|+|++
T Consensus       147 -~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~  225 (327)
T 3lxl_A          147 -RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT  225 (327)
T ss_dssp             -TEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             -CccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHh
Confidence             99999999999999999999999999998754332       2346778999999998889999999999999999999


Q ss_pred             CCCCCCchhhHHhhhc----------cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          161 GKHIPPSHALDLIRDR----------NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |..||...........          ..............+..++..+.+||.+||+.||.+|||+.++++.|+.+....
T Consensus       226 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          226 YCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             TTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             CCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            9998765433221111          111122222334556778899999999999999999999999999999886543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-36  Score=280.91  Aligned_cols=211  Identities=15%  Similarity=0.196  Sum_probs=172.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+.|.+|+.++.+++||||++++..+.    ..||||++++ +...+......+++..+..++.|++.||.|||+. |
T Consensus        52 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  130 (287)
T 1u59_A           52 ADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK-N  130 (287)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34678999999999999999999885444    3499999974 5555555567799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      ++||||||+||+++.++.+||+|||++.......       ...+|+.|+|||++.+..++.++||||||+++|+|+| |
T Consensus       131 i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g  210 (287)
T 1u59_A          131 FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG  210 (287)
T ss_dssp             EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             EeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998764332       2245788999999998889999999999999999999 9


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCC
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE  231 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~  231 (401)
                      ..||.........     ..+.......++..++..+.++|.+||+.||.+|||+.++++.|+.+.....
T Consensus       211 ~~p~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  275 (287)
T 1u59_A          211 QKPYKKMKGPEVM-----AFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA  275 (287)
T ss_dssp             CCTTTTCCTHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHH-----HHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence            9887653322111     1111122334567788999999999999999999999999999998865543

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-36  Score=285.66  Aligned_cols=209  Identities=17%  Similarity=0.216  Sum_probs=165.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+...|.+|+.++.+++||||++++..+.     .+||||++|+ +...+......+++..++.++.||+.||.|||++ 
T Consensus        88 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-  166 (333)
T 1mqb_A           88 KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM-  166 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            34568999999999999999999885444     3499999974 5555544567899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-  160 (401)
                      |++||||||+||+++.++.+||+|||+++......       ...+++.|+|||.+.+..++.++|||||||++|||+| 
T Consensus       167 ~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~  246 (333)
T 1mqb_A          167 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY  246 (333)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcC
Confidence            99999999999999999999999999998754321       1234678999999998889999999999999999999 


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |..||.........     ..+........+..++..+.++|.+||+.||.+|||+.++++.|+.+...
T Consensus       247 g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          247 GERPYWELSNHEVM-----KAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             SCCTTTTCCHHHHH-----HHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCCcccCCHHHHH-----HHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            88887653322111     11111222334567788999999999999999999999999999887654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.2e-36  Score=280.02  Aligned_cols=209  Identities=18%  Similarity=0.255  Sum_probs=166.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++++++||||+.++.. ..     ..||||+++ ++...+......+++..++.++.|++.||.|||++ 
T Consensus        69 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-  147 (298)
T 3f66_A           69 EVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK-  147 (298)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            34679999999999999999998843 32     349999997 56666655667799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      |++||||||+||+++.++.+||+|||+++.....        ....+|+.|+|||.+.+..++.++||||||+++|+|++
T Consensus       148 ~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  227 (298)
T 3f66_A          148 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT  227 (298)
T ss_dssp             TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999865432        22346788999999998899999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |..|+......    ...............+..++..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       228 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          228 RGAPPYPDVNT----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             TSCCSSTTSCT----TTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCccCCH----HHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            66554332110    011111111112234556778899999999999999999999999999988654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.8e-36  Score=281.66  Aligned_cols=204  Identities=16%  Similarity=0.205  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+.. ...+++..+..++.|++.||.|||+. |+
T Consensus        85 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~l~~~~~~~i~~qi~~~L~~LH~~-~i  162 (321)
T 2c30_A           85 RRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS-QVRLNEEQIATVCEAVLQALAYLHAQ-GV  162 (321)
T ss_dssp             SHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3467999999999999999998884333     34999999765554443 35699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.
T Consensus       163 vH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~  242 (321)
T 2c30_A          163 IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYF  242 (321)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999998875432    34578999999999998899999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .......... +.....+  ....+..++..+.++|.+||+.||.+|||+.++++.-.
T Consensus       243 ~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~  297 (321)
T 2c30_A          243 SDSPVQAMKR-LRDSPPP--KLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPF  297 (321)
T ss_dssp             TSCHHHHHHH-HHHSSCC--CCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred             CCCHHHHHHH-HhcCCCC--CcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence            5432211111 1110001  11123456788999999999999999999999987544

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3e-36  Score=286.96  Aligned_cols=204  Identities=13%  Similarity=0.093  Sum_probs=161.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||++++..+.     .+||||++|+.+.........+++..+..++.||+.||.|||++ ||+
T Consensus        72 ~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~-~iv  150 (362)
T 2bdw_A           72 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN-GIV  150 (362)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT-TCB
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CeE
Confidence            467899999999999999999985443     34999999754444444556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCC---CCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDDD---VNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~---~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||||+|||++.+   +.+||+|||++.......   ...||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       151 H~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf  230 (362)
T 2bdw_A          151 HRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF  230 (362)
T ss_dssp             CCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             eccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            99999999999865   459999999998765432   357899999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .+...............  .........++.++.+||.+||+.||.+|||+.+++++-
T Consensus       231 ~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  286 (362)
T 2bdw_A          231 WDEDQHRLYAQIKAGAY--DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVP  286 (362)
T ss_dssp             CCSSHHHHHHHHHHTCC--CCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSH
T ss_pred             CCCCHHHHHHHHHhCCC--CCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence            76432221111111100  001111235678899999999999999999999998753

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.2e-37  Score=285.81  Aligned_cols=204  Identities=16%  Similarity=0.184  Sum_probs=164.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+.++..++||||+.++..+.     .+||||++|+ +...+......+++..+..++.||+.||.|||++ |
T Consensus        44 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~-g  122 (321)
T 1tki_A           44 DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH-N  122 (321)
T ss_dssp             HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4567889999999999999999985444     3499999964 5555554556899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECC--CCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDD--DVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.  ++.+||+|||+++......   ...||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       123 ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p  202 (321)
T 1tki_A          123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP  202 (321)
T ss_dssp             EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            999999999999987  7899999999998865543   34689999999999988899999999999999999999999


Q ss_pred             CCchhhHHhhhcccccccccccc--CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLE--GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |...........    +......  ......++.++.+||.+||+.||.+|||+.+++++-+
T Consensus       203 f~~~~~~~~~~~----i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~  260 (321)
T 1tki_A          203 FLAETNQQIIEN----IMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW  260 (321)
T ss_dssp             TCCSSHHHHHHH----HHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred             CcCCCHHHHHHH----HHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChh
Confidence            876432221111    1111110  0011245778999999999999999999999998543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=307.80  Aligned_cols=208  Identities=14%  Similarity=0.200  Sum_probs=169.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..++|.+|+.++++++||||++++..+.    .+||||++|+ +...+......+++..+..++.||+.||.|||++ ||
T Consensus       379 ~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~i  457 (613)
T 2ozo_A          379 DTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK-NF  457 (613)
T ss_dssp             THHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            4678999999999999999999985444    3599999965 5555555567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      +||||||+|||++.++.+||+|||+++......       ...+++.|+|||++.+..++.++|||||||++|||+| |.
T Consensus       458 iHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~  537 (613)
T 2ozo_A          458 VHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQ  537 (613)
T ss_dssp             CCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             EcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999998754322       1234578999999998999999999999999999998 99


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .||........     ...+....+...|..++.++.+||.+||+.||.+|||+.+|++.|+.+...
T Consensus       538 ~Pf~~~~~~~~-----~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          538 KPYKKMKGPEV-----MAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             CTTTTCCSHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHH-----HHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            88865432211     111222233456778889999999999999999999999999999877543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=2.5e-36  Score=296.44  Aligned_cols=203  Identities=14%  Similarity=0.192  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.+.+|+.+++.++||||++++..+.           .+||||+++++...+..   .+++..+..++.||+.||.||
T Consensus       104 ~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~~---~l~~~~~~~~~~qil~aL~~l  180 (464)
T 3ttj_A          104 HAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM---ELDHERMSYLLYQMLCGIKHL  180 (464)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTS---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHhh---cCCHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999885432           45999999887776643   489999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ ||+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|||++|
T Consensus       181 H~~-~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g  259 (464)
T 3ttj_A          181 HSA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH  259 (464)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             HHC-CcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Confidence            999 9999999999999999999999999999876543   345789999999999999999999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccc------------------ccccc-------ccCCCC-----------hHHHHHHHHHHHHh
Q 015733          162 KHIPPSHALDLIRDRNIQT------------------LTDSC-------LEGQFS-----------SDEGTELVRLASRC  205 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~------------------~~~~~-------~~~~~~-----------~~~~~~l~~li~~c  205 (401)
                      +.||.+.............                  .+...       +...++           ...+.++.+||.+|
T Consensus       260 ~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~m  339 (464)
T 3ttj_A          260 KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKM  339 (464)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHH
Confidence            9999764321110000000                  00000       000001           11367899999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTA  222 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+|||+.+++++
T Consensus       340 L~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          340 LVIDPAKRISVDDALQH  356 (464)
T ss_dssp             SCSSTTTSCCHHHHHTS
T ss_pred             cCCChhhCCCHHHHhcC
Confidence            99999999999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-36  Score=288.18  Aligned_cols=209  Identities=19%  Similarity=0.311  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCCC----------------------CCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGET----------------------QPMK   66 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~----------------------~~l~   66 (401)
                      ..+.|.+|+.++.++ +||||+.++..+.     .+||||++| ++...+....                      ..++
T Consensus        91 ~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (344)
T 1rjb_A           91 EREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLT  170 (344)
T ss_dssp             -CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CC
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCC
Confidence            457899999999999 9999999885443     349999986 5555554332                      2489


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccC
Q 015733           67 WAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTG  140 (401)
Q Consensus        67 ~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~  140 (401)
                      +..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||++.......      ...+|+.|+|||.+.+.
T Consensus       171 ~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  249 (344)
T 1rjb_A          171 FEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEG  249 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccC
Confidence            999999999999999999999 99999999999999999999999999998654332      23457889999999988


Q ss_pred             ccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          141 RVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       141 ~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .++.++|||||||++|+|+| |..||.+.....    .....+........+..++.++.+||.+||+.||.+|||+.++
T Consensus       250 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  325 (344)
T 1rjb_A          250 IYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA----NFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNL  325 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCChhHhHHHHHHHHHHHHcCCCCCcccCCcHH----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence            99999999999999999998 888876532111    1112222223334566778899999999999999999999999


Q ss_pred             HHHHHccccC
Q 015733          220 VTALVTLQKD  229 (401)
Q Consensus       220 l~~l~~~~~~  229 (401)
                      ++.|+.+...
T Consensus       326 ~~~l~~~~~~  335 (344)
T 1rjb_A          326 TSFLGCQLAD  335 (344)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=284.25  Aligned_cols=197  Identities=14%  Similarity=0.142  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...++.|+..+.++ +||||+.++..+.     .+||||+++++...+...+.++++..++.++.||+.||.|||++ ||
T Consensus       100 ~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~i  178 (311)
T 3p1a_A          100 RARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ-GL  178 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            45677777777666 8999998884443     44999998888877766667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      +||||||+|||++.++.+||+|||++......   ....||+.|+|||++.+ .++.++|||||||++|||++|..||..
T Consensus       179 vH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~  257 (311)
T 3p1a_A          179 VHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHG  257 (311)
T ss_dssp             ECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred             ecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999998875443   33468999999999875 789999999999999999999876654


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ....       ..+........++..++.++.+||.+||+.||.+|||+.++++.
T Consensus       258 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          258 GEGW-------QQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             HHHH-------HHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccHH-------HHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence            3211       11111111112334567889999999999999999999999874

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.3e-36  Score=279.55  Aligned_cols=207  Identities=19%  Similarity=0.257  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++.+++||||++++..+.     .+||||++|+ +...+......+++..++.++.|++.||.|||++ |
T Consensus        62 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  140 (283)
T 3gen_A           62 SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK-Q  140 (283)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999885444     3499999864 5555554466799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||+++.....     ....+|+.|+|||.+.+..++.++||||||+++|+|+| |..
T Consensus       141 i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~  220 (283)
T 3gen_A          141 FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM  220 (283)
T ss_dssp             CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999865432     23345778999999998899999999999999999998 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||...........     +........+...+..+.+++.+||+.||.+|||+.++++.|..+..
T Consensus       221 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          221 PYERFTNSETAEH-----IAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             TTTTSCHHHHHHH-----HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CccccChhHHHHH-----HhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            8765432211111     11112233455667889999999999999999999999999987654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=2.7e-37  Score=295.29  Aligned_cols=206  Identities=10%  Similarity=-0.007  Sum_probs=149.5

Q ss_pred             hhhHHHHHHHHHHhhh--CCCeEEEeeeec-----------------------------cccEeeecCCcccccccCCCC
Q 015733           15 LQSTYFIVSLVLIASM--SSFILLAVIFMF-----------------------------QIPSYEFHCLTFSNNFSGETQ   63 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~--~h~niv~~~~~~-----------------------------~~~v~Ey~~~~l~~~~~~~~~   63 (401)
                      ...+.|.+|+.++..+  +|||+++++..+                             ..+||||++|++...+...+.
T Consensus       104 ~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~  183 (371)
T 3q60_A          104 SELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDF  183 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhcc
Confidence            3456677885555444  699988755222                             255999999877777765444


Q ss_pred             CCCHHHH------HHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC-ccccccccCCccc
Q 015733           64 PMKWAMR------LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-SYSTNLAFTPPEY  136 (401)
Q Consensus        64 ~l~~~~~------~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~  136 (401)
                      .+++..+      ..++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++...... ...+|+.|+|||+
T Consensus       184 ~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~  262 (371)
T 3q60_A          184 VYVFRGDEGILALHILTAQLIRLAANLQSK-GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREF  262 (371)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHH
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHC-CCccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhh
Confidence            5566666      78889999999999999 99999999999999999999999999999876554 4567799999999


Q ss_pred             ccc--CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcc---ccccccccccCCCChHHHHHHHHHHHHhcccCCC
Q 015733          137 LRT--GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN---IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPR  211 (401)
Q Consensus       137 ~~~--~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~  211 (401)
                      +.+  ..++.++|||||||++|||+||+.||............   .............+..++..+.+||.+||+.||.
T Consensus       263 ~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  342 (371)
T 3q60_A          263 LNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRR  342 (371)
T ss_dssp             HTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTT
T ss_pred             ccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChh
Confidence            987  67999999999999999999999998764221111000   0111111111222346788999999999999999


Q ss_pred             CCCCHHHHHH
Q 015733          212 ERPNPRSLVT  221 (401)
Q Consensus       212 ~Rps~~~vl~  221 (401)
                      +|||+.++++
T Consensus       343 ~Rpt~~e~l~  352 (371)
T 3q60_A          343 RRLLPLEAME  352 (371)
T ss_dssp             TCCCHHHHTT
T ss_pred             hCCCHHHHhc
Confidence            9999999986

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=9e-37  Score=290.50  Aligned_cols=208  Identities=15%  Similarity=0.060  Sum_probs=153.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++||||++++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        59 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~-~i  137 (361)
T 3uc3_A           59 IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSM-QI  137 (361)
T ss_dssp             SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3477899999999999999999885443     34999998754444443456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCC--eEEecccCccccCC---CCccccccccCCccccccCccCCC-CcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVN--PRLSCFGLMKNSRD---GRSYSTNLAFTPPEYLRTGRVTPE-SVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~--~kl~Dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~-~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.++.  +||+|||+++....   .....||+.|+|||++.+..++.+ +|||||||++|+|++|+.|
T Consensus       138 vH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~P  217 (361)
T 3uc3_A          138 CHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYP  217 (361)
T ss_dssp             CSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCC
Confidence            99999999999987765  99999999875332   234578999999999988777655 8999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |...............+............++..+.+||.+||+.||.+|||+.+++++-+
T Consensus       218 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~  277 (361)
T 3uc3_A          218 FEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSW  277 (361)
T ss_dssp             CC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHH
T ss_pred             CCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcc
Confidence            865321111111111111111111122346788999999999999999999999998544

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.5e-36  Score=280.33  Aligned_cols=207  Identities=15%  Similarity=0.218  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      .+.|.+|+.++.+++||||+.++....    ..||||++++.+..+......+++..++.++.||+.||.|||+. |++|
T Consensus        62 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H  140 (291)
T 1xbb_A           62 KDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES-NFVH  140 (291)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC-CeEc
Confidence            578999999999999999999885443    34999999754444444456799999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      |||||+||+++.++.+||+|||++.......       ...+++.|+|||.+.+..++.++||||||+++|+|+| |..|
T Consensus       141 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p  220 (291)
T 1xbb_A          141 RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP  220 (291)
T ss_dssp             SCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             CCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998754432       1234688999999998889999999999999999999 9988


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |........     ...+........+..++..+.++|.+||+.||.+|||+.++++.|+.+...
T Consensus       221 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          221 YRGMKGSEV-----TAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             STTCCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            765432211     111111223345677888999999999999999999999999999887543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=9.9e-37  Score=288.00  Aligned_cols=199  Identities=18%  Similarity=0.182  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+.+..|..++..+ +||||++++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ |
T Consensus        60 ~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~  138 (345)
T 1xjd_A           60 DVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK-G  138 (345)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            456788899999887 9999999985555     34999999765544444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.+|.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       139 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf  218 (345)
T 1xjd_A          139 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF  218 (345)
T ss_dssp             CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             eEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999986432    23567899999999999989999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR-SLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-~vl~  221 (401)
                      .+...........    ..  ...+|...+.++.+||.+||+.||.+||++. +|++
T Consensus       219 ~~~~~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          219 HGQDEEELFHSIR----MD--NPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             CCSSHHHHHHHHH----HC--CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             CCCCHHHHHHHHH----hC--CCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence            7643322211111    11  1235666788999999999999999999997 6654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-36  Score=280.72  Aligned_cols=210  Identities=9%  Similarity=0.067  Sum_probs=163.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccccCC--CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNFSGE--TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      .+.+.+|+.++++++||||++++..+.       .+||||++|+ +...+...  ...+++..++.++.||+.||.|||+
T Consensus        51 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~  130 (319)
T 4euu_A           51 VDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE  130 (319)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999999884322       3599999864 54444432  2349999999999999999999999


Q ss_pred             CCCceeccCCCCCEEE----CCCCCeEEecccCccccCCCC---ccccccccCCccccc--------cCccCCCCcchhh
Q 015733           87 KERALYHDLNAYRIVF----DDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLR--------TGRVTPESVMYSF  151 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~--------~~~~~~~~Dv~sl  151 (401)
                      + ||+||||||+|||+    +.++.+||+|||+++......   ...||+.|+|||++.        +..++.++|||||
T Consensus       131 ~-~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diwsl  209 (319)
T 4euu_A          131 N-GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSI  209 (319)
T ss_dssp             T-TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHH
T ss_pred             C-CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHH
Confidence            9 99999999999999    788889999999998765442   346899999999986        4678999999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccc-----------------------cccccCCCChHHHHHHHHHHHHhccc
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLT-----------------------DSCLEGQFSSDEGTELVRLASRCLQY  208 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~li~~cl~~  208 (401)
                      ||++|||+||..||...............+.                       .......++...+..+.+++.+||+.
T Consensus       210 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  289 (319)
T 4euu_A          210 GVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEA  289 (319)
T ss_dssp             HHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccC
Confidence            9999999999999853211000000000000                       00011234567889999999999999


Q ss_pred             CCCCCCCHHHHHHHHHccc
Q 015733          209 EPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       209 ~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||.+|||+.++++......
T Consensus       290 dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          290 DQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             CTTTSCCHHHHHHHHHHHT
T ss_pred             ChhhhccHHHhhhccHHHh
Confidence            9999999999999887543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.8e-36  Score=281.36  Aligned_cols=206  Identities=19%  Similarity=0.225  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCc-cccccc-----CCCCCCCHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLT-FSNNFS-----GETQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~-l~~~~~-----~~~~~l~~~~~~~i~~qi~~~   80 (401)
                      .+.|.+|+.++.+++||||++++..+.          ..||||++++ +...+.     .....+++..++.++.||+.|
T Consensus        80 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a  159 (313)
T 3brb_A           80 IEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG  159 (313)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHH
Confidence            467999999999999999999884322          4599999965 433331     345679999999999999999


Q ss_pred             HHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHH
Q 015733           81 LEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        81 l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      |.|||++ |++||||||+||+++.++.+||+|||+++.....      ....+++.|+|||.+.+..++.++||||||++
T Consensus       160 L~~LH~~-~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  238 (313)
T 3brb_A          160 MEYLSNR-NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVT  238 (313)
T ss_dssp             HHHHHTT-TCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHhC-CcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHH
Confidence            9999999 9999999999999999999999999998865432      22345788999999998899999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      +|+|++ |..||..........     ..........+..++..+.++|.+||+.||.+|||+.++++.|+.+..
T Consensus       239 l~el~~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~  308 (313)
T 3brb_A          239 MWEIATRGMTPYPGVQNHEMYD-----YLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLE  308 (313)
T ss_dssp             HHHHHTTSCCSSTTCCGGGHHH-----HHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCccCCHHHHHH-----HHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            999999 777765432211111     111112234556778899999999999999999999999999988765

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=5e-37  Score=286.32  Aligned_cols=209  Identities=15%  Similarity=0.174  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...|.+|+.++.+++||||++++..+.         .+||||++|+.+..+.....++++..++.++.|++.||.|||++
T Consensus        56 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~  135 (311)
T 3ork_A           56 YLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN  135 (311)
T ss_dssp             HHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            357899999999999999999884322         46999998755444444456799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       ||+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++.+..++.++|||||||++|+|+|
T Consensus       136 -~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~  214 (311)
T 3ork_A          136 -GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT  214 (311)
T ss_dssp             -TCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHh
Confidence             9999999999999999999999999999865432       23457999999999998899999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH-HHHHcccc
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV-TALVTLQK  228 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl-~~l~~~~~  228 (401)
                      |..||.................  ......+..++.++.+||.+||+.||.+||+..+++ ..|.....
T Consensus       215 g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          215 GEPPFTGDSPVSVAYQHVREDP--IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             SSCSCCCSSHHHHHHHHHHCCC--CCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCChHHHHHHHhcCCC--CCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence            9999876433221111111100  000011234678899999999999999999766665 45555443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.2e-36  Score=284.62  Aligned_cols=211  Identities=18%  Similarity=0.252  Sum_probs=169.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++.+++||||+.++..+.       .+||||++++ +...+. . ..+++..++.++.||+.||.|||+.
T Consensus        76 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~-~~~~~~~~~~i~~~l~~~l~~LH~~  153 (318)
T 3lxp_A           76 HRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP-R-HSIGLAQLLLFAQQICEGMAYLHAQ  153 (318)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGG-G-SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHh-h-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3567999999999999999999884332       3599999865 444443 2 3599999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       ||+||||||+||+++.++.+||+|||++.......       ...+++.|+|||.+.+..++.++||||||+++|+|+|
T Consensus       154 -~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~  232 (318)
T 3lxp_A          154 -HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT  232 (318)
T ss_dssp             -TEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             -CccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHh
Confidence             99999999999999999999999999998765432       2346778999999998899999999999999999999


Q ss_pred             CCCCCCchhhHHh----------hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDLI----------RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |..||........          .................+..++..+.+||.+||+.||.+|||+.++++.|+.+...
T Consensus       233 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  311 (318)
T 3lxp_A          233 HCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEK  311 (318)
T ss_dssp             TTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence            9988754322111          11112222233334456677889999999999999999999999999999887654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.1e-36  Score=293.21  Aligned_cols=199  Identities=16%  Similarity=0.224  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.+++.++||||++++..+.     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||+
T Consensus        60 ~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~-giv  138 (476)
T 2y94_A           60 VGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH-MVV  138 (476)
T ss_dssp             HHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT-TEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            457899999999999999999985444     34999998765555555667899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||++......   ...+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+
T Consensus       139 HrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  218 (476)
T 2y94_A          139 HRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDD  218 (476)
T ss_dssp             CSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCC
Confidence            9999999999999999999999999876543   34578999999999988665 7899999999999999999999876


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .........    +....  ...|..++.++.+||.+||+.||.+|||+.+++++
T Consensus       219 ~~~~~~~~~----i~~~~--~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          219 DHVPTLFKK----ICDGI--FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             SSSHHHHHH----HHTTC--CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCHHHHHHH----HhcCC--cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence            432222111    11111  12455677889999999999999999999999974

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.3e-36  Score=309.14  Aligned_cols=206  Identities=15%  Similarity=0.213  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..++|.+|+.++.+++||||++++....    .+||||++|+.+..+......+++..++.++.||+.||.|||++ ||+
T Consensus       413 ~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~-~ii  491 (635)
T 4fl3_A          413 LKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES-NFV  491 (635)
T ss_dssp             GHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC-CEe
Confidence            4578999999999999999999884443    35999999765554444567799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ||||||+|||++.++.+||+|||+++......       ...+|+.|+|||++.+..++.++|||||||++|||+| |..
T Consensus       492 HrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~  571 (635)
T 4fl3_A          492 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQK  571 (635)
T ss_dssp             CSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999998754332       2235678999999998899999999999999999998 999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||.+......     ...+........|..++.++.+||..||+.||.+|||+.+|++.|+.+.
T Consensus       572 Pf~~~~~~~~-----~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          572 PYRGMKGSEV-----TAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             SSTTCCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            8866432211     1122222334567778899999999999999999999999999998764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3e-36  Score=285.64  Aligned_cols=200  Identities=17%  Similarity=0.203  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+.+..|..++..+ +||+|+.++..++     .+||||++|+.+..+....+.+++..++.++.||+.||.|||++ |
T Consensus        63 ~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-g  141 (353)
T 2i0e_A           63 DVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK-G  141 (353)
T ss_dssp             CHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            456788999999887 7999999886555     34999999765444444446799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.+|.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       142 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf  221 (353)
T 2i0e_A          142 IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF  221 (353)
T ss_dssp             CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             EEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCC
Confidence            99999999999999999999999999986322    23567899999999999889999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      .+........    .+...  ...+|...+.++.+||.+||+.||.+||+     +.+|+.+
T Consensus       222 ~~~~~~~~~~----~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          222 EGEDEDELFQ----SIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             CCSSHHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             CCCCHHHHHH----HHHhC--CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            7653322211    11111  12456778889999999999999999996     4666653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=2.2e-36  Score=279.84  Aligned_cols=213  Identities=8%  Similarity=0.050  Sum_probs=165.9

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+.+|+.++..+ +|+|++.++....     .+||||+.+++...+...+.++++..+..++.||+.||.|||++ |
T Consensus        48 ~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  126 (298)
T 1csn_A           48 DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK-S  126 (298)
T ss_dssp             TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            456789999999999 7787776663332     35999996677777665566799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCC-----eEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHH
Q 015733           90 ALYHDLNAYRIVFDDDVN-----PRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~-----~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      |+||||||+|||++.++.     +||+|||+++.....           ....||+.|+|||++.+..++.++|||||||
T Consensus       127 ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  206 (298)
T 1csn_A          127 LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGH  206 (298)
T ss_dssp             EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             EecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHH
Confidence            999999999999987776     999999999865432           2346899999999999888999999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhcccccccccc---ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTLTDSC---LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ++|||++|+.||........ ......+....   ........++.++.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       207 il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~  285 (298)
T 1csn_A          207 VFMYFLRGSLPWQGLKAATN-KQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  285 (298)
T ss_dssp             HHHHHHHSSCTTSSCCSCCH-HHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCcchhhcccc-HHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence            99999999999865211000 00000000000   001122356788999999999999999999999999999887643

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.2e-36  Score=284.76  Aligned_cols=203  Identities=14%  Similarity=0.176  Sum_probs=160.9

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+.+|+.++.++ +||||++++..++     .+||||++|+.+..+....+.+++..++.++.||+.||.|||++ |
T Consensus        52 ~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~  130 (345)
T 3a8x_A           52 DIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER-G  130 (345)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            345688999999988 8999999986554     34999999765544444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.++.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       131 ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf  210 (345)
T 3a8x_A          131 IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF  210 (345)
T ss_dssp             CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999986322    23457899999999999988999999999999999999999998


Q ss_pred             CchhhHHh-----hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH------HHHHH
Q 015733          166 PSHALDLI-----RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP------RSLVT  221 (401)
Q Consensus       166 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~------~~vl~  221 (401)
                      ........     .......+...  ...+|...+.++.+||.+||+.||.+||++      .+++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~  275 (345)
T 3a8x_A          211 DIVGSSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  275 (345)
T ss_dssp             TTTTC-------CHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHT
T ss_pred             CCcccccccccccHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhc
Confidence            54211100     00001111111  224567788899999999999999999996      56655

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.2e-36  Score=281.87  Aligned_cols=208  Identities=16%  Similarity=0.300  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCC-----------------CCCCCHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE-----------------TQPMKWAMRL   71 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~-----------------~~~l~~~~~~   71 (401)
                      ..+.|.+|+.++.++ +||||+.++..+.     .+||||+++ ++...+...                 ..++++..++
T Consensus        69 ~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (313)
T 1t46_A           69 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLL  148 (313)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHH
T ss_pred             HHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHH
Confidence            357899999999999 9999999885443     349999986 454444322                 2259999999


Q ss_pred             HHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCC
Q 015733           72 RVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPE  145 (401)
Q Consensus        72 ~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~  145 (401)
                      .++.||+.||.|||++ |++||||||+||+++.++.+||+|||+++......      ...+|+.|+|||.+.+..++.+
T Consensus       149 ~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  227 (313)
T 1t46_A          149 SFSYQVAKGMAFLASK-NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE  227 (313)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHHHHHHC-CeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChH
Confidence            9999999999999999 99999999999999999999999999998765432      2345778999999998899999


Q ss_pred             CcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          146 SVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       146 ~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +||||||+++|+|+| |..||.......    ..............+..++..+.++|.+||+.||.+|||+.++++.|+
T Consensus       228 ~Di~slG~il~ellt~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~  303 (313)
T 1t46_A          228 SDVWSYGIFLWELFSLGSSPYPGMPVDS----KFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE  303 (313)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSTTCCSSH----HHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcccchh----HHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence            999999999999999 888875532111    111112222233345667889999999999999999999999999998


Q ss_pred             cccc
Q 015733          225 TLQK  228 (401)
Q Consensus       225 ~~~~  228 (401)
                      .+..
T Consensus       304 ~~~~  307 (313)
T 1t46_A          304 KQIS  307 (313)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.7e-36  Score=282.50  Aligned_cols=199  Identities=16%  Similarity=0.172  Sum_probs=155.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...+.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||+
T Consensus        65 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~-~iv  143 (327)
T 3a62_A           65 TAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK-GII  143 (327)
T ss_dssp             ------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CEE
Confidence            456889999999999999999885444     34999999765544444456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       144 H~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  223 (327)
T 3a62_A          144 YRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTG  223 (327)
T ss_dssp             CCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999998764322    345789999999999988899999999999999999999999876


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ........    .+...  ...+|...+.++.+||.+||+.||.+||     ++.+++++
T Consensus       224 ~~~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h  277 (327)
T 3a62_A          224 ENRKKTID----KILKC--KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH  277 (327)
T ss_dssp             SSHHHHHH----HHHHT--CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred             CCHHHHHH----HHHhC--CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence            43222111    11111  1235667788999999999999999999     77788774

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=280.03  Aligned_cols=205  Identities=11%  Similarity=0.129  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHhhhC---CCeEEEeeeecc----------ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMS---SFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~---h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+.+|+.++.+++   ||||++++..+.          .+||||+++++...+... ...+++..+..++.||+.||.
T Consensus        55 ~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~  134 (308)
T 3g33_A           55 PISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLD  134 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHH
Confidence            356778888777765   999998874321          359999998877776654 345999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |||++ ||+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       135 ~lH~~-~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~  213 (308)
T 3g33_A          135 FLHAN-CIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF  213 (308)
T ss_dssp             HHHHT-TCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTT
T ss_pred             HHHHC-CcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999999875443   3356899999999999999999999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccc--------------ccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLT--------------DSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      +|..||.+.............+.              .....       ....+.++..+.+||.+||+.||.+|||+.+
T Consensus       214 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e  293 (308)
T 3g33_A          214 RRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFR  293 (308)
T ss_dssp             TSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHH
Confidence            99999866432211111110000              00000       0012346788999999999999999999999


Q ss_pred             HHHH
Q 015733          219 LVTA  222 (401)
Q Consensus       219 vl~~  222 (401)
                      ++++
T Consensus       294 ~l~h  297 (308)
T 3g33_A          294 ALQH  297 (308)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9874

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=283.54  Aligned_cols=205  Identities=14%  Similarity=0.142  Sum_probs=151.9

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeec-------------cccEeeecCCcccccccC--CCCCCCHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMF-------------QIPSYEFHCLTFSNNFSG--ETQPMKWAMRLRVALHIAE   79 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~-------------~~~v~Ey~~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~   79 (401)
                      ..+.|.+|+.++.++. ||||+.++..+             -..||||++|++...+..  ...++++..++.++.||+.
T Consensus        68 ~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~  147 (337)
T 3ll6_A           68 KNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCR  147 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            4567899999999996 99999988444             135999999887776643  4567999999999999999


Q ss_pred             HHHHHhcCCC--ceeccCCCCCEEECCCCCeEEecccCccccCCCC----------------ccccccccCCcccc---c
Q 015733           80 ALEYCTSKER--ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----------------SYSTNLAFTPPEYL---R  138 (401)
Q Consensus        80 ~l~~lH~~~~--ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----------------~~~~~~~y~aPE~~---~  138 (401)
                      ||.|||+. |  |+||||||+|||++.++.+||+|||+++......                ...+|+.|+|||++   .
T Consensus       148 ~l~~LH~~-~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  226 (337)
T 3ll6_A          148 AVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYS  226 (337)
T ss_dssp             HHHHHHTS-SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCT
T ss_pred             HHHHHHhC-CCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccc
Confidence            99999999 8  9999999999999999999999999998754321                33478999999998   4


Q ss_pred             cCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       139 ~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      +..++.++|||||||++|+|+||..||......        .+.........+...+..+.+||.+||+.||.+|||+.+
T Consensus       227 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  298 (337)
T 3ll6_A          227 NFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--------RIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAE  298 (337)
T ss_dssp             TSCSSHHHHHHHHHHHHHHHHHSSCCC--------------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHH
T ss_pred             cCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--------HhhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHH
Confidence            567889999999999999999999998653211        111112222223445566899999999999999999999


Q ss_pred             HHHHHHccccC
Q 015733          219 LVTALVTLQKD  229 (401)
Q Consensus       219 vl~~l~~~~~~  229 (401)
                      +++.|+.+...
T Consensus       299 ~l~~l~~~~~~  309 (337)
T 3ll6_A          299 VVHQLQEIAAA  309 (337)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988754

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.1e-36  Score=281.79  Aligned_cols=206  Identities=14%  Similarity=0.230  Sum_probs=161.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC-----CCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG-----ETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~-----~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....+.+|+.++++++||||++++..+.     .+||||++|++...+..     ....+++..+..++.||+.||.|||
T Consensus        46 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH  125 (317)
T 2pmi_A           46 TPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH  125 (317)
T ss_dssp             SCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999985544     34999999876665532     2356999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHh
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++ ||+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+ ..++.++|||||||++|||+|
T Consensus       126 ~~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~  204 (317)
T 2pmi_A          126 EN-KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMIT  204 (317)
T ss_dssp             HT-TEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             HC-CeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHh
Confidence            99 9999999999999999999999999999875432    34567999999999986 468999999999999999999


Q ss_pred             CCCCCCchhhHHhhhcccc-----------cc-----ccc------------cccCCCChHHHHHHHHHHHHhcccCCCC
Q 015733          161 GKHIPPSHALDLIRDRNIQ-----------TL-----TDS------------CLEGQFSSDEGTELVRLASRCLQYEPRE  212 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~-----------~~-----~~~------------~~~~~~~~~~~~~l~~li~~cl~~~p~~  212 (401)
                      |..||.+............           .+     ..+            .+....+...+.++.+||.+||+.||.+
T Consensus       205 g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  284 (317)
T 2pmi_A          205 GKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDM  284 (317)
T ss_dssp             SSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGG
T ss_pred             CCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCccc
Confidence            9999876432211100000           00     000            0011112245678999999999999999


Q ss_pred             CCCHHHHHHH
Q 015733          213 RPNPRSLVTA  222 (401)
Q Consensus       213 Rps~~~vl~~  222 (401)
                      |||+.++++.
T Consensus       285 Rpt~~e~l~h  294 (317)
T 2pmi_A          285 RLSAKQALHH  294 (317)
T ss_dssp             SCCHHHHTTS
T ss_pred             CCCHHHHhCC
Confidence            9999999874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=6.2e-36  Score=274.43  Aligned_cols=201  Identities=18%  Similarity=0.215  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++.+++||||+.++..+.     .+||||++++.+..+......+++..+..++.||+.||.|||+. |++
T Consensus        53 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~i~  131 (279)
T 3fdn_A           53 EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RVI  131 (279)
T ss_dssp             HHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             HHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-CEe
Confidence            467899999999999999999885443     34999999754444443446799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      ||||||+||+++.++.+||+|||++......  ....|++.|+|||.+.+..++.++||||||+++|+|++|..||....
T Consensus       132 H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  211 (279)
T 3fdn_A          132 HRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT  211 (279)
T ss_dssp             ECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             cccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc
Confidence            9999999999999999999999998665433  34578999999999998889999999999999999999999987543


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .........      .....+|...+..+.+||.+||+.||.+|||+.+++++-+
T Consensus       212 ~~~~~~~~~------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~  260 (279)
T 3fdn_A          212 YQETYKRIS------RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPW  260 (279)
T ss_dssp             HHHHHHHHH------HTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHH
T ss_pred             HHHHHHHHH------hCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCcc
Confidence            222111111      1122456667888999999999999999999999998543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.6e-36  Score=296.97  Aligned_cols=199  Identities=17%  Similarity=0.239  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~~i   90 (401)
                      ...+.+|+.++..++||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+ + ||
T Consensus       192 ~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~-gi  270 (446)
T 4ejn_A          192 VAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK-NV  270 (446)
T ss_dssp             ---------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred             HHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC-CE
Confidence            357889999999999999999885443     3599999976555444455689999999999999999999998 8 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++.....    ...+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       271 iHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  350 (446)
T 4ejn_A          271 VYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  350 (446)
T ss_dssp             CCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             EECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCC
Confidence            99999999999999999999999999864322    34678999999999999999999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      .............    .  ...+|..++.++.+||.+||+.||.+||     |+.+++++
T Consensus       351 ~~~~~~~~~~i~~----~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h  405 (446)
T 4ejn_A          351 NQDHEKLFELILM----E--EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH  405 (446)
T ss_dssp             CSSHHHHHHHHHH----C--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             CCCHHHHHHHHHh----C--CCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence            6533222211111    1  1235667788999999999999999999     99999874

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.3e-36  Score=275.44  Aligned_cols=208  Identities=20%  Similarity=0.262  Sum_probs=167.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCC--CCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGET--QPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++||||++++....    ..||||++|+.+..+....  ..+++..+..++.|++.||.|||++ |
T Consensus        51 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  129 (279)
T 1qpc_A           51 SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-N  129 (279)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999884433    3499999865444443332  3699999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||++.......     ...+++.|+|||.+.+..++.++||||||+++|+|+| |..
T Consensus       130 i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  209 (279)
T 1qpc_A          130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRI  209 (279)
T ss_dssp             EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998765432     2345778999999998889999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.+........     .+........+..++..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       210 p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          210 PYPGMTNPEVIQ-----NLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             SSTTCCHHHHHH-----HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHH-----HHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            876543221111     1111122334566788999999999999999999999999999887643

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5e-36  Score=281.53  Aligned_cols=209  Identities=16%  Similarity=0.231  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCC---------------CCCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE---------------TQPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~---------------~~~l~~~~~~~i   73 (401)
                      ..+.|.+|+.++.++ +||||++++..+.     .+||||+++ ++...+...               ...+++..++.+
T Consensus        68 ~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  147 (327)
T 1fvr_A           68 DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF  147 (327)
T ss_dssp             --CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHH
Confidence            346799999999999 9999999884433     349999986 555554432               247999999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCC---CCccccccccCCccccccCccCCCCcchh
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD---GRSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      +.||+.||.|||++ ||+||||||+||+++.++.+||+|||+++....   .....+++.|+|||.+.+..++.++||||
T Consensus       148 ~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  226 (327)
T 1fvr_A          148 AADVARGMDYLSQK-QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  226 (327)
T ss_dssp             HHHHHHHHHHHHHT-TEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchH
Confidence            99999999999999 999999999999999999999999999875332   22335678999999999888999999999


Q ss_pred             hHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          151 FGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       151 lG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |||++|+|+| |..||...........     +........+..++..+.+||.+||+.||.+|||+.++++.|..+...
T Consensus       227 lG~il~ellt~g~~pf~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  301 (327)
T 1fvr_A          227 YGVLLWEIVSLGGTPYCGMTCAELYEK-----LPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  301 (327)
T ss_dssp             HHHHHHHHHTTSCCTTTTCCHHHHHHH-----GGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCCCCCCcHHHHHHH-----hhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            9999999998 9988865432221111     111223345667788999999999999999999999999999988765


Q ss_pred             C
Q 015733          230 T  230 (401)
Q Consensus       230 ~  230 (401)
                      .
T Consensus       302 ~  302 (327)
T 1fvr_A          302 R  302 (327)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.4e-35  Score=275.84  Aligned_cols=210  Identities=22%  Similarity=0.399  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC--CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG--ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+..  ...++++..++.++.|++.||.|||++
T Consensus        73 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  152 (307)
T 2nru_A           73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN  152 (307)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            3578999999999999999999885443     3499999864 4444432  346799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                       |++||||||+||+++.++.+||+|||++......      ....||+.|+|||.+. +.++.++||||||+++|+|+||
T Consensus       153 -~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~g  230 (307)
T 2nru_A          153 -HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG  230 (307)
T ss_dssp             -TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT-TEECTHHHHHHHHHHHHHHHHC
T ss_pred             -CeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhc-CCCCccchhHHHHHHHHHHHHC
Confidence             9999999999999999999999999998865432      2346899999999886 4689999999999999999999


Q ss_pred             CCCCCchhhHHh--------h--hccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          162 KHIPPSHALDLI--------R--DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       162 ~~p~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ..||........        .  ...+...++... ...+...+..+.+++.+||+.||.+|||+.+|++.|+.+..
T Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          231 LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             CCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             CCCcccCcchHHHHHHHHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            998765321100        0  001111122221 23567788999999999999999999999999999988753

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=5.2e-36  Score=272.92  Aligned_cols=207  Identities=17%  Similarity=0.253  Sum_probs=168.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++||||++++..+.     ..||||++| ++...+......+++..+..++.|++.||.|||++ |
T Consensus        46 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~  124 (267)
T 3t9t_A           46 SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA-C  124 (267)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3478999999999999999999885443     349999986 45555554556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ++||||||+||+++.++.+||+|||++......     ....+++.|+|||++.+..++.++||||||+++|+|++ |..
T Consensus       125 i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~  204 (267)
T 3t9t_A          125 VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI  204 (267)
T ss_dssp             CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCC
Confidence            999999999999999999999999998865432     23346778999999998889999999999999999999 788


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      ||...........    + ........+...+..+.+++.+||+.||.+|||+.++++.|..+.+
T Consensus       205 p~~~~~~~~~~~~----i-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          205 PYENRSNSEVVED----I-STGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             TTTTCCHHHHHHH----H-HTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHH----H-hcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            8765332211111    1 1111223455677889999999999999999999999999988764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=6.6e-36  Score=287.51  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=157.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcc-cccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTF-SNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l-~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++++++||||++++..+.     .+||||++|+. ...+.. ....+++..+..++.||+.||.|||++ 
T Consensus        69 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-  147 (389)
T 3gni_B           69 MVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-  147 (389)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            4567888999999999999999885444     34999999654 444332 246799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCC-----------CCccccccccCCcccccc--CccCCCCcchhhHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-----------GRSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLL  155 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l  155 (401)
                      ||+||||||+|||++.++.+||+|||.+.....           .....||+.|+|||++.+  ..++.++|||||||++
T Consensus       148 ~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il  227 (389)
T 3gni_B          148 GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITA  227 (389)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHH
T ss_pred             CeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHH
Confidence            999999999999999999999999998764321           122467889999999987  5789999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhccccc----ccc------------------------------------ccccCCCChHHH
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQT----LTD------------------------------------SCLEGQFSSDEG  195 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~~----~~~------------------------------------~~~~~~~~~~~~  195 (401)
                      |||++|..||.+.............    +.+                                    ......++..++
T Consensus       228 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  307 (389)
T 3gni_B          228 CELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFS  307 (389)
T ss_dssp             HHHHHSSCTTTTCCSTTHHHHC--------------------------------------------------------CC
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccC
Confidence            9999999998653211100000000    000                                    000112344567


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH--HHccc
Q 015733          196 TELVRLASRCLQYEPRERPNPRSLVTA--LVTLQ  227 (401)
Q Consensus       196 ~~l~~li~~cl~~~p~~Rps~~~vl~~--l~~~~  227 (401)
                      ..+.+||.+||+.||.+|||+.+++++  +..+.
T Consensus       308 ~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~  341 (389)
T 3gni_B          308 PHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  341 (389)
T ss_dssp             HHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC-
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHh
Confidence            889999999999999999999999874  44443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=8.9e-36  Score=285.72  Aligned_cols=204  Identities=17%  Similarity=0.141  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+......+++..+..++.||+.||.|||++ |
T Consensus        91 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-g  169 (387)
T 1kob_A           91 DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH-S  169 (387)
T ss_dssp             HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3467899999999999999999985444     3499999865 5555555556899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECC--CCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDD--DVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.  ++.+||+|||+++......   ...||+.|+|||++.+..++.++|||||||++|+|+||..|
T Consensus       170 ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~P  249 (387)
T 1kob_A          170 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP  249 (387)
T ss_dssp             EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCC
Confidence            999999999999974  5779999999998765442   34689999999999988899999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+.............  ...........++.++.+||.+||+.||.+|||+.+++++
T Consensus       250 f~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          250 FAGEDDLETLQNVKRC--DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             SCCSSHHHHHHHHHHC--CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCCCCHHHHHHHHHhC--CCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            8764322111111000  0011222334678889999999999999999999999874

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-35  Score=281.43  Aligned_cols=208  Identities=17%  Similarity=0.178  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++.+++||||++++..+.     .+||||+++++...+......+++..+..++.|++.||.|||++ ||+
T Consensus        56 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iv  134 (346)
T 1ua2_A           56 NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH-WIL  134 (346)
T ss_dssp             CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC-CEE
Confidence            357899999999999999999885443     34999999988887777777899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+. .++.++|||||||++|+|++|..||.
T Consensus       135 H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~  214 (346)
T 1ua2_A          135 HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLP  214 (346)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999875432    235689999999999764 58899999999999999999998876


Q ss_pred             chhhHHhhhcccccc--------------ccccc---cCCC-----ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          167 SHALDLIRDRNIQTL--------------TDSCL---EGQF-----SSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~--------------~~~~~---~~~~-----~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      +..............              .+...   ....     ....+.++.+||.+||+.||.+|||+.+++++-.
T Consensus       215 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~  294 (346)
T 1ua2_A          215 GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY  294 (346)
T ss_dssp             CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGG
T ss_pred             CCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChh
Confidence            543211111110000              00000   0001     1345688999999999999999999999988644


Q ss_pred             c
Q 015733          225 T  225 (401)
Q Consensus       225 ~  225 (401)
                      -
T Consensus       295 f  295 (346)
T 1ua2_A          295 F  295 (346)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=283.60  Aligned_cols=203  Identities=15%  Similarity=0.155  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||++++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. ||
T Consensus        91 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~i  169 (349)
T 2w4o_A           91 DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN-GI  169 (349)
T ss_dssp             --------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3467889999999999999999885444     34999999754444444567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.   ++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|||++|..|
T Consensus       170 vH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p  249 (349)
T 2w4o_A          170 VHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEP  249 (349)
T ss_dssp             CCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             EecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCC
Confidence            99999999999975   889999999999875443   345689999999999988899999999999999999999999


Q ss_pred             CCchhhHHhhhcccccccccc--ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSC--LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.........   ...+....  .........+.++.+||.+||+.||.+|||+.+++++
T Consensus       250 f~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          250 FYDERGDQFM---FRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             TCCTTCHHHH---HHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCcccHHH---HHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            8654322110   11111111  1112335677889999999999999999999999874

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=8e-36  Score=282.92  Aligned_cols=201  Identities=15%  Similarity=0.160  Sum_probs=159.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..+.|.+|+.++..++||||++++..+.     .+||||++|+ +...+..   ....+++..+..++.||+.||.|||+
T Consensus        69 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~  148 (351)
T 3c0i_A           69 STEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD  148 (351)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999984443     3499999965 4333332   34568999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCC---eEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVN---PRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      + ||+||||||+|||++.++.   +||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       149 ~-~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  227 (351)
T 3c0i_A          149 N-NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILL  227 (351)
T ss_dssp             T-TEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             C-CceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHH
Confidence            9 9999999999999987654   999999999876543    2356899999999999888999999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|..||.+.......     .+.......  .....++.++.+||.+||+.||.+|||+.+++++
T Consensus       228 ~g~~pf~~~~~~~~~-----~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          228 SGCLPFYGTKERLFE-----GIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             HSSCSSCSSHHHHHH-----HHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HCCCCCCCcHHHHHH-----HHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            999998764322111     111110000  0012457789999999999999999999999874

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.2e-35  Score=291.69  Aligned_cols=205  Identities=13%  Similarity=0.179  Sum_probs=154.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec----------cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF----------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~----------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+.|.+|+.++.+++||||++++..+          ..+||||+++++...+. ....+++..+..++.||+.||.|||
T Consensus        95 ~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH  173 (458)
T 3rp9_A           95 DCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFR-TPVYLTELHIKTLLYNLLVGVKYVH  173 (458)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCSEEHHHHHH-SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccccchhhhcc-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999998544          14499999887777665 4567999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-------------------------------CccccccccCCc
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------------------------------RSYSTNLAFTPP  134 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------------------------------~~~~~~~~y~aP  134 (401)
                      +. |||||||||+|||++.++.+||+|||+++.....                               ...+||+.|+||
T Consensus       174 ~~-~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP  252 (458)
T 3rp9_A          174 SA-GILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAP  252 (458)
T ss_dssp             HT-TCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCH
T ss_pred             hC-CcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccCh
Confidence            99 9999999999999999999999999999875321                               234579999999


Q ss_pred             cccc-cCccCCCCcchhhHHHHHHHHh-----------CCCCCCchhhHHhh----------------hcccccc-----
Q 015733          135 EYLR-TGRVTPESVMYSFGTLLLDLLS-----------GKHIPPSHALDLIR----------------DRNIQTL-----  181 (401)
Q Consensus       135 E~~~-~~~~~~~~Dv~slG~~l~el~t-----------g~~p~~~~~~~~~~----------------~~~~~~~-----  181 (401)
                      |++. ...++.++|||||||++|||+|           |+++|.+...-...                ...+..+     
T Consensus       253 E~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  332 (458)
T 3rp9_A          253 ELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILG  332 (458)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHC
T ss_pred             HHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcC
Confidence            9864 5679999999999999999999           55555432100000                0000000     


Q ss_pred             ---------------------ccccc---cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          182 ---------------------TDSCL---EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       182 ---------------------~~~~~---~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                                           .....   .....+..+.++.+||.+||..||.+|||+.+++++
T Consensus       333 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~H  397 (458)
T 3rp9_A          333 TPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAH  397 (458)
T ss_dssp             CCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence                                 00000   001123347889999999999999999999999985

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=7.5e-36  Score=281.17  Aligned_cols=208  Identities=16%  Similarity=0.266  Sum_probs=167.2

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCCC---------------CCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGET---------------QPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~---------------~~l~~~~~~~i   73 (401)
                      ....|.+|+.++.++ +||||+.++..+.     .+||||++| ++...+....               ..+++..++.+
T Consensus        83 ~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (334)
T 2pvf_A           83 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHH
Confidence            346799999999999 8999999885443     349999986 4554444322               34899999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCc
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      +.||+.||.|||++ ||+||||||+||+++.++.+||+|||+++......      ...+++.|+|||++.+..++.++|
T Consensus       163 ~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  241 (334)
T 2pvf_A          163 TYQLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  241 (334)
T ss_dssp             HHHHHHHHHHHHHT-TEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHH
T ss_pred             HHHHHHHHHHHHhC-CeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHH
Confidence            99999999999999 99999999999999999999999999998755432      234578899999999888999999


Q ss_pred             chhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          148 MYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       148 v~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |||||+++|+|+| |..||.+........     .+........+..++..+.++|.+||+.||.+|||+.++++.|+.+
T Consensus       242 i~slG~il~ellt~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l  316 (334)
T 2pvf_A          242 VWSFGVLMWEIFTLGGSPYPGIPVEELFK-----LLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  316 (334)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCHHHHHH-----HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCcCcCCHHHHHH-----HHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            9999999999999 888876543221111     1111122345667788999999999999999999999999999888


Q ss_pred             ccC
Q 015733          227 QKD  229 (401)
Q Consensus       227 ~~~  229 (401)
                      ...
T Consensus       317 ~~~  319 (334)
T 2pvf_A          317 LTL  319 (334)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=3.5e-36  Score=279.16  Aligned_cols=210  Identities=15%  Similarity=0.240  Sum_probs=167.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.++.+++||||+.++..+.       .+||||+++ ++...+......+++..++.++.|++.||.|||++ 
T Consensus        67 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-  145 (302)
T 4e5w_A           67 IADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR-  145 (302)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC-
Confidence            467999999999999999999884322       359999986 45555545567799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++||||||+||+++.++.+||+|||++.......       ...+|..|+|||.+.+..++.++||||||+++|+|+||
T Consensus       146 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  225 (302)
T 4e5w_A          146 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTY  225 (302)
T ss_dssp             TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred             CcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHc
Confidence            99999999999999999999999999998765432       33567889999999998999999999999999999999


Q ss_pred             CCCCCchhhHHh----------hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          162 KHIPPSHALDLI----------RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       162 ~~p~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ..|+........          .................+..++..+.+||.+||+.||.+|||+.++++.|+.+.
T Consensus       226 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          226 CDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             TCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            987543211100          000111111222234456778899999999999999999999999999998753

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.7e-35  Score=278.94  Aligned_cols=201  Identities=16%  Similarity=0.199  Sum_probs=164.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.|.+|+.++.+++||||++++..+.     .+||||++++.+..+......+++..++.++.||+.||.|||++ |
T Consensus        83 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~  161 (335)
T 2owb_A           83 HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN-R  161 (335)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            45678999999999999999999884443     34999999754444444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       162 ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  241 (335)
T 2owb_A          162 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF  241 (335)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             CEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCC
Confidence            999999999999999999999999999875422    2356899999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..........    .+...  ...++..++..+.+||.+||+.||.+|||+.+++++
T Consensus       242 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          242 ETSCLKETYL----RIKKN--EYSIPKHINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             CCSSHHHHHH----HHHHT--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             CCCCHHHHHH----HHhcC--CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            6543221111    11111  123456677889999999999999999999999974

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.9e-36  Score=299.07  Aligned_cols=209  Identities=20%  Similarity=0.273  Sum_probs=169.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++++++||||++++....    .+||||+.++ +...+.. ....+++..++.++.||+.||.|||++ |
T Consensus       305 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~  383 (535)
T 2h8h_A          305 SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-N  383 (535)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3578999999999999999999884333    3499999965 5554443 235699999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      |+||||||+|||++.++.+||+|||+++.....     ....++..|+|||++.++.++.++|||||||++|||+| |..
T Consensus       384 ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~  463 (535)
T 2h8h_A          384 YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV  463 (535)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCC
T ss_pred             eeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999875432     22345778999999998899999999999999999999 888


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ||.+.......     ..+....+...+..++..+.+||.+||+.||++|||+.+|+..|+.+....
T Consensus       464 P~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~  525 (535)
T 2h8h_A          464 PYPGMVNREVL-----DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  525 (535)
T ss_dssp             SSTTCCHHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred             CCCCCCHHHHH-----HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence            87654222111     111122333456778889999999999999999999999999999886543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=7e-36  Score=285.47  Aligned_cols=204  Identities=16%  Similarity=0.109  Sum_probs=162.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+......+++..+..++.||+.||.|||+. |
T Consensus       129 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~  207 (373)
T 2x4f_A          129 DKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM-Y  207 (373)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999885443     4499999864 5555555556799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEE--CCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVF--DDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill--~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||+  +.++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|||++|..|
T Consensus       208 ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~p  287 (373)
T 2x4f_A          208 ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSP  287 (373)
T ss_dssp             EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCC
Confidence            9999999999999  56788999999999876543   234689999999999988899999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+...............  .........++.++.+||.+||+.||.+|||+.+++++
T Consensus       288 f~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          288 FLGDNDAETLNNILACRW--DLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             TCCSSHHHHHHHHHHTCC--CSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhccC--CCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            876432211111111100  00111123467889999999999999999999999973

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=4.5e-36  Score=275.70  Aligned_cols=204  Identities=18%  Similarity=0.270  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------------------ccEeeecCC-cccccccC-CCCCCCHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------------------IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRV   73 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------------------~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i   73 (401)
                      .+.+.+|+.++.+++||||+.+...+.                     .+||||+++ ++...+.. ....+++..++.+
T Consensus        48 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i  127 (284)
T 2a19_B           48 NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALEL  127 (284)
T ss_dssp             SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHH
Confidence            467899999999999999998874432                     359999997 45554432 2467999999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchh
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      +.||+.||.|||++ |++||||||+||+++.++.+||+|||++......   ....+++.|+|||.+.+..++.++||||
T Consensus       128 ~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  206 (284)
T 2a19_B          128 FEQITKGVDYIHSK-KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYA  206 (284)
T ss_dssp             HHHHHHHHHHHHHT-TEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CeeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHH
Confidence            99999999999999 9999999999999999999999999998876543   3446899999999999888999999999


Q ss_pred             hHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          151 FGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       151 lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ||+++|+|++|..|+..... .     ...+    ....++...+..+.++|.+||+.||.+|||+.++++.|+.+....
T Consensus       207 lG~il~~l~~~~~~~~~~~~-~-----~~~~----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          207 LGLILAELLHVCDTAFETSK-F-----FTDL----RDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             HHHHHHHHHSCCSSHHHHHH-H-----HHHH----HTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHhcCCcchhHHH-H-----HHHh----hcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence            99999999999987543211 0     1111    112234556678999999999999999999999999999887654


Q ss_pred             C
Q 015733          231 E  231 (401)
Q Consensus       231 ~  231 (401)
                      .
T Consensus       277 ~  277 (284)
T 2a19_B          277 E  277 (284)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=3e-36  Score=276.41  Aligned_cols=207  Identities=18%  Similarity=0.297  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-c-----ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-Q-----IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-~-----~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++.+++||||+.++... .     ..||||+++ ++...+... ...+++..+..++.|++.||.|||++
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  136 (278)
T 1byg_A           57 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN  136 (278)
T ss_dssp             --HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999988432 1     349999997 455544332 22389999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                       |++||||||+||+++.++.+||+|||++...... ....+++.|+|||.+.+..++.++||||||+++|+|+| |..||
T Consensus       137 -~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~  215 (278)
T 1byg_A          137 -NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY  215 (278)
T ss_dssp             -TCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred             -CccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCC
Confidence             9999999999999999999999999998865443 23456889999999998889999999999999999998 88887


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .........     ..+........+..++..+.++|.+||+.||.+|||+.++++.|+.+..
T Consensus       216 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          216 PRIPLKDVV-----PRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             TTSCGGGHH-----HHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHH-----HHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence            653221111     1111122334566778899999999999999999999999999988764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=8.3e-36  Score=287.61  Aligned_cols=208  Identities=15%  Similarity=0.123  Sum_probs=154.7

Q ss_pred             hHHHHHHHHHHh-hhCCCeEEEeeeecc---------ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIA-SMSSFILLAVIFMFQ---------IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~-~~~h~niv~~~~~~~---------~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+.+|+.++. ..+||||+.++..+.         .+||||++|+ +...+... ...+++..+..++.||+.||.||
T Consensus        98 ~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L  177 (400)
T 1nxk_A           98 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  177 (400)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356788998874 458999998874332         3499999974 55555443 35699999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                      |+. ||+||||||+|||++.   ++.+||+|||+++.....   ...+||+.|+|||++.+..++.++|||||||++|||
T Consensus       178 H~~-~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  256 (400)
T 1nxk_A          178 HSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL  256 (400)
T ss_dssp             HHT-TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHH
T ss_pred             HHC-CccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHH
Confidence            999 9999999999999997   789999999999875543   345789999999999988999999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccccccc--cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCL--EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ++|..||...............+.....  .......++.++.+||.+||+.||.+|||+.+++.+-+-
T Consensus       257 l~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~  325 (400)
T 1nxk_A          257 LCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWI  325 (400)
T ss_dssp             HHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHH
T ss_pred             HhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccc
Confidence            9999998653211100000111111111  111124577889999999999999999999999986543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2e-35  Score=280.16  Aligned_cols=208  Identities=14%  Similarity=0.174  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ....+.+|+.++.+++||||+.++..+.             .+||||+++++...+......+++..+..++.||+.||.
T Consensus        59 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~  138 (351)
T 3mi9_A           59 FPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY  138 (351)
T ss_dssp             SCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            3467899999999999999998884332             359999999888888777778999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCcccccc-CccCCCCcchhhHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGT  153 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~  153 (401)
                      |||++ ||+||||||+|||++.++.+||+|||+++.....        ....||+.|+|||++.+ ..++.++|||||||
T Consensus       139 ~LH~~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~  217 (351)
T 3mi9_A          139 YIHRN-KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGC  217 (351)
T ss_dssp             HHHHT-TEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHH
T ss_pred             HHHHC-CeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHH
Confidence            99999 9999999999999999999999999999864321        23457899999999876 45899999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhcccccc--ccccc----------------cCC---CCh-----HHHHHHHHHHHHhcc
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTL--TDSCL----------------EGQ---FSS-----DEGTELVRLASRCLQ  207 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~--~~~~~----------------~~~---~~~-----~~~~~l~~li~~cl~  207 (401)
                      ++|+|+||..||.+..............  ..+..                ...   ...     ..++.+.+||.+||+
T Consensus       218 il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  297 (351)
T 3mi9_A          218 IMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLV  297 (351)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhc
Confidence            9999999999987643221110000000  00000                000   000     024668999999999


Q ss_pred             cCCCCCCCHHHHHHHHH
Q 015733          208 YEPRERPNPRSLVTALV  224 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~l~  224 (401)
                      .||.+|||+.+++++-.
T Consensus       298 ~dP~~R~t~~e~l~hp~  314 (351)
T 3mi9_A          298 LDPAQRIDSDDALNHDF  314 (351)
T ss_dssp             SSGGGSCCHHHHHTSGG
T ss_pred             CChhhCCCHHHHhCCCC
Confidence            99999999999988533

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.6e-35  Score=272.36  Aligned_cols=199  Identities=15%  Similarity=0.199  Sum_probs=162.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     ..||||++++.+..+......+++..+..++.|++.||.|||++ |++
T Consensus        58 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~  136 (284)
T 2vgo_A           58 EHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHER-KVI  136 (284)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT-TEE
T ss_pred             HHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence            467899999999999999999885443     34999998754333333445799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      ||||||+||+++.++.+||+|||++......  ....|++.|+|||.+.+..++.++||||||+++|+|++|..||....
T Consensus       137 H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  216 (284)
T 2vgo_A          137 HRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS  216 (284)
T ss_dssp             CCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999999998765433  34568999999999998889999999999999999999999986543


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......    .+..  ....+|...+..+.++|.+||+.||.+|||+.+++++
T Consensus       217 ~~~~~~----~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          217 HTETHR----RIVN--VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             HHHHHH----HHHT--TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             HhHHHH----HHhc--cccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence            221111    1111  1123566678899999999999999999999999974

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=8.6e-36  Score=275.03  Aligned_cols=202  Identities=13%  Similarity=0.171  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..+.|.+|+.++++++||||+.++..+.         .+||||++++.+..+......+++..++.++.||+.||.|||+
T Consensus        68 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~  147 (290)
T 1t4h_A           68 ERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT  147 (290)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4577999999999999999999884332         3599999875544444445679999999999999999999999


Q ss_pred             CCC--ceeccCCCCCEEEC-CCCCeEEecccCccccCCCC--ccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           87 KER--ALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDGR--SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        87 ~~~--ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      . |  ++||||||+||+++ .++.+||+|||++.......  ...||+.|+|||++. +.++.++|||||||++|+|++|
T Consensus       148 ~-~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g  225 (290)
T 1t4h_A          148 R-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATS  225 (290)
T ss_dssp             S-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHS
T ss_pred             C-CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhC
Confidence            9 8  99999999999998 78999999999997655442  356899999999887 5689999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||.........   ...+........++...++++.+||.+||+.||.+|||+.+++++
T Consensus       226 ~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          226 EYPYSECQNAAQI---YRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             SCTTTTCSSHHHH---HHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCCCCcCcHHHH---HHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            9998653211110   111111111112334456789999999999999999999999864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2e-35  Score=273.10  Aligned_cols=202  Identities=16%  Similarity=0.193  Sum_probs=165.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.|.+|+.++++++||||++++..+.     ..||||++|+.+..+......+++..+..++.|++.||.|||++ |
T Consensus        57 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  135 (294)
T 2rku_A           57 HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN-R  135 (294)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            45678999999999999999999884443     34999999655444444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ++||||||+||+++.++.+||+|||++......    ....||+.|+|||.+.+..++.++||||||+++|+|+||..||
T Consensus       136 i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  215 (294)
T 2rku_A          136 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF  215 (294)
T ss_dssp             EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999875422    2346889999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ..........    .+...  ....+...+..+.+++.+||+.||.+|||+.++++.-
T Consensus       216 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~  267 (294)
T 2rku_A          216 ETSCLKETYL----RIKKN--EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDE  267 (294)
T ss_dssp             CCSSHHHHHH----HHHTT--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred             CCCCHHHHHH----HHhhc--cCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence            6643221111    11111  1234566778899999999999999999999999753

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.9e-36  Score=277.20  Aligned_cols=208  Identities=19%  Similarity=0.244  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++....    ..||||+++ ++...+......+++..+..++.|++.||.|||++ |+
T Consensus        64 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  142 (291)
T 1u46_A           64 AMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK-RF  142 (291)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCcccEEEEEccCCceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            3468999999999999999999885444    349999985 55555554456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      +||||||+||+++.++.+||+|||++.......       ...+++.|+|||++.+..++.++||||||+++|+|++ |.
T Consensus       143 ~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~  222 (291)
T 1u46_A          143 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQ  222 (291)
T ss_dssp             ECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988764432       2345778999999998889999999999999999999 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .||........    ...+.........+..++..+.++|.+||+.||.+|||+.++++.|..+..
T Consensus       223 ~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          223 EPWIGLNGSQI----LHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             CTTTTCCHHHH----HHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             CCcccCCHHHH----HHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence            88765432211    111111122223456678899999999999999999999999999988764

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.5e-35  Score=276.10  Aligned_cols=209  Identities=13%  Similarity=0.117  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     ..||||++|+.+..+.....++++..++.++.|++.||.|||++ ||+
T Consensus        78 ~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~  156 (309)
T 2h34_A           78 RTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA-GAT  156 (309)
T ss_dssp             HHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-cCC
Confidence            477999999999999999999884433     34999999754444444456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||+++.++.+||+|||++......     ....+++.|+|||.+.+..++.++||||||+++|+|+||..||.
T Consensus       157 H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (309)
T 2h34_A          157 HRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQ  236 (309)
T ss_dssp             CSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCC
Confidence            9999999999999999999999998765433     23467899999999998889999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHccccC
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-NPRSLVTALVTLQKD  229 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~~vl~~l~~~~~~  229 (401)
                      ................   .....+..++..+.++|.+||+.||.+|| |+.++++.|+.....
T Consensus       237 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~  297 (309)
T 2h34_A          237 GDQLSVMGAHINQAIP---RPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT  297 (309)
T ss_dssp             SCHHHHHHHHHHSCCC---CGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred             CchHHHHHHHhccCCC---CccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence            6543322111111110   01123456778899999999999999999 899999999877543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=6.3e-36  Score=275.50  Aligned_cols=207  Identities=19%  Similarity=0.277  Sum_probs=168.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++++++||||+.++..+.     ..||||++|+ +...+.. ....+++..++.++.|++.||.|||++ 
T Consensus        52 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-  130 (288)
T 3kfa_A           52 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-  130 (288)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC-
Confidence            4578999999999999999999885444     3499999964 5444433 356699999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      |++||||||+||+++.++.+||+|||++.......     ...+++.|+|||.+.+..++.++||||||+++|+|++ |.
T Consensus       131 ~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~  210 (288)
T 3kfa_A          131 NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM  210 (288)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999998765432     2245778999999998899999999999999999999 88


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .||.......     ....+........+..++..+.+|+.+||+.||.+|||+.++++.|+.+..
T Consensus       211 ~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          211 SPYPGIDLSQ-----VYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             CSSTTCCGGG-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHH-----HHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence            7775532211     111222223344567788899999999999999999999999999987754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3e-36  Score=283.65  Aligned_cols=207  Identities=15%  Similarity=0.265  Sum_probs=164.4

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccC-------------CCCCCCHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG-------------ETQPMKWAMRLRVAL   75 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~-------------~~~~l~~~~~~~i~~   75 (401)
                      ..+.|.+|+.++.++ +||||+.++..+.     .+||||+++ ++...+..             ....+++..++.++.
T Consensus        92 ~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (333)
T 2i1m_A           92 EKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSS  171 (333)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHH
Confidence            457799999999999 8999999885443     349999986 44444432             135689999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcch
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMY  149 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~  149 (401)
                      ||+.||.|||++ ||+||||||+|||++.++.+||+|||+++......      ...+|+.|+|||.+.+..++.++|||
T Consensus       172 qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  250 (333)
T 2i1m_A          172 QVAQGMAFLASK-NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVW  250 (333)
T ss_dssp             HHHHHHHHHHHT-TEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHhcC-CcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHH
Confidence            999999999999 99999999999999999999999999998643321      23457789999999988999999999


Q ss_pred             hhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          150 SFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       150 slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||||++|+|+| |..||.+.....    ..............+..++..+.+||.+||+.||.+|||+.+|++.|+.+.
T Consensus       251 slG~il~el~t~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          251 SYGILLWEIFSLGLNPYPGILVNS----KFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             HHHHHHHHHTTTSCCSSTTCCSSH----HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcccchhH----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence            99999999999 777775432111    111122222233345567788999999999999999999999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.5e-36  Score=286.42  Aligned_cols=196  Identities=18%  Similarity=0.176  Sum_probs=152.3

Q ss_pred             hhHHHHHHHHH-HhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVL-IASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~-l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+..|..+ ++.++||||++++..++     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |
T Consensus        81 ~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-g  159 (373)
T 2r5t_A           81 EEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL-N  159 (373)
T ss_dssp             ----------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34567778776 57789999999985555     34999999765544444456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.+|.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       160 ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf  239 (373)
T 2r5t_A          160 IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPF  239 (373)
T ss_dssp             CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999986322    24567999999999999989999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      ............    ...  ...++..++..+.+||.+||+.||.+||++.+
T Consensus       240 ~~~~~~~~~~~i----~~~--~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          240 YSRNTAEMYDNI----LNK--PLQLKPNITNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             CCSBHHHHHHHH----HHS--CCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             CCCCHHHHHHHH----Hhc--ccCCCCCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence            765332222111    111  12345667889999999999999999999753

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.7e-36  Score=290.12  Aligned_cols=204  Identities=16%  Similarity=0.135  Sum_probs=163.4

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.+.|.+|+.++..++||||++++..++     .+||||++|+.+..+.. ...+++..+..++.||+.||.|||++ |
T Consensus       111 ~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~-~~~~~e~~~~~~~~qi~~aL~~LH~~-g  188 (410)
T 3v8s_A          111 SDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS-NYDVPEKWARFYTAEVVLALDAIHSM-G  188 (410)
T ss_dssp             CCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            34566889999999999999999985555     34999998764444432 34689999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCc----cCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGR----VTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~----~~~~~Dv~slG~~l~el~t  160 (401)
                      |+||||||+|||++.++.+||+|||+++.....     .+.+||+.|+|||++.+..    ++.++|||||||++|||+|
T Consensus       189 ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~  268 (410)
T 3v8s_A          189 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV  268 (410)
T ss_dssp             EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH
T ss_pred             eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh
Confidence            999999999999999999999999999875543     2567999999999998654    8899999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCC--hHHHHHHHHHHHHhcccCCCC--CCCHHHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRE--RPNPRSLVTALV  224 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~l~  224 (401)
                      |..||............    ........+|  ..++.++.+||.+||..+|.+  ||++.+|+++-.
T Consensus       269 G~~Pf~~~~~~~~~~~i----~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~  332 (410)
T 3v8s_A          269 GDTPFYADSLVGTYSKI----MNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLF  332 (410)
T ss_dssp             SSCTTCCSSHHHHHHHH----HTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGG
T ss_pred             CCCCCCCCChhhHHHHH----HhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCcc
Confidence            99998765432222111    1111111222  357889999999999999988  999999997543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=5.9e-36  Score=279.33  Aligned_cols=207  Identities=18%  Similarity=0.271  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCc-ccccccCCCC---------------CCCHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLT-FSNNFSGETQ---------------PMKWAMRLRV   73 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~-l~~~~~~~~~---------------~l~~~~~~~i   73 (401)
                      .+.|.+|+.++.++ +||||+.++..+.      ..||||++|+ +...+.....               .+++..++.+
T Consensus        74 ~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
T 2xir_A           74 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICY  153 (316)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHH
Confidence            46799999999999 7899999884432      3499999964 5444443222               2899999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCc
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      +.||+.||.|||+. |++||||||+||+++.++.+||+|||+++......      ...+|+.|+|||++.+..++.++|
T Consensus       154 ~~qi~~al~~lH~~-~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  232 (316)
T 2xir_A          154 SFQVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD  232 (316)
T ss_dssp             HHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHHhC-CcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhH
Confidence            99999999999999 99999999999999999999999999998654332      234678899999999889999999


Q ss_pred             chhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          148 MYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       148 v~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      |||||+++|+|+| |..||........    .............+..++..+.+++.+||+.||.+|||+.++++.|+.+
T Consensus       233 i~slG~il~~l~t~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  308 (316)
T 2xir_A          233 VWSFGVLLWEIFSLGASPYPGVKIDEE----FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  308 (316)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCCSHH----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCcccchhHH----HHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            9999999999998 8888754321110    1111111122334566788899999999999999999999999999877


Q ss_pred             cc
Q 015733          227 QK  228 (401)
Q Consensus       227 ~~  228 (401)
                      ..
T Consensus       309 ~~  310 (316)
T 2xir_A          309 LQ  310 (316)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.9e-36  Score=287.74  Aligned_cols=204  Identities=17%  Similarity=0.274  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ....+.+|+.++.++. ||||++++..+.       .+|||||++++...+..  ..+++..+..++.||+.||.|||+.
T Consensus        51 ~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~  128 (388)
T 3oz6_A           51 DAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRA--NILEPVHKQYVVYQLIKVIKYLHSG  128 (388)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCSEEHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccCcCHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            4567889999999998 999999885432       45999999877666643  4799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCC-------------------------CCccccccccCCcccccc-Cc
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD-------------------------GRSYSTNLAFTPPEYLRT-GR  141 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~-------------------------~~~~~~~~~y~aPE~~~~-~~  141 (401)
                       ||+||||||+|||++.++.+||+|||+++....                         .....||+.|+|||++.+ ..
T Consensus       129 -~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  207 (388)
T 3oz6_A          129 -GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTK  207 (388)
T ss_dssp             -TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCC
T ss_pred             -CEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCC
Confidence             999999999999999999999999999976432                         123468999999999987 67


Q ss_pred             cCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccc-----------------------------cccccC----
Q 015733          142 VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLT-----------------------------DSCLEG----  188 (401)
Q Consensus       142 ~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~----  188 (401)
                      ++.++|||||||++|||++|+.||.+.............+.                             ......    
T Consensus       208 ~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (388)
T 3oz6_A          208 YTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTK  287 (388)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHH
T ss_pred             CCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcc
Confidence            89999999999999999999999876432111111000000                             000000    


Q ss_pred             --------CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          189 --------QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       189 --------~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                              ..+..++.++.+|+.+||+.||.+|||+.+++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          288 WKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKH  329 (388)
T ss_dssp             HHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             hhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence                    0112456789999999999999999999999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=8.6e-36  Score=279.93  Aligned_cols=200  Identities=16%  Similarity=0.207  Sum_probs=155.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeec----------------------------------------------------
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMF----------------------------------------------------   42 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~----------------------------------------------------   42 (401)
                      ...+.|.+|+.++++++||||++++..+                                                    
T Consensus        46 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (332)
T 3qd2_B           46 LAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG  125 (332)
T ss_dssp             THHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC--------------------------------------
T ss_pred             hHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccc
Confidence            3567899999999999999999987432                                                    


Q ss_pred             ----------cccEeeecCCc-ccccccCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeE
Q 015733           43 ----------QIPSYEFHCLT-FSNNFSGE--TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPR  109 (401)
Q Consensus        43 ----------~~~v~Ey~~~~-l~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~k  109 (401)
                                ..+||||++|+ +...+...  ....++..++.++.||+.||.|||++ ||+||||||+|||++.++.+|
T Consensus       126 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~~k  204 (332)
T 3qd2_B          126 QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFFTMDDVVK  204 (332)
T ss_dssp             ------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECTTCCEE
T ss_pred             cccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhC-CeeecCCCcccEEEeCCCCEE
Confidence                      24599999975 44444332  23457778999999999999999999 999999999999999999999


Q ss_pred             EecccCccccCCC----------------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHh
Q 015733          110 LSCFGLMKNSRDG----------------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI  173 (401)
Q Consensus       110 l~Dfg~~~~~~~~----------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~  173 (401)
                      |+|||+++.....                ....||+.|+|||++.+..++.++|||||||++|||++|..|+......  
T Consensus       205 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~--  282 (332)
T 3qd2_B          205 VGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI--  282 (332)
T ss_dssp             ECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH--
T ss_pred             EeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHH--
Confidence            9999999875443                2345899999999999989999999999999999999998764221110  


Q ss_pred             hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                          ...... ......+...++.+.+||.+||+.||.+|||+.+++++
T Consensus       283 ----~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          283 ----ITDVRN-LKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             ----HHHHHT-TCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred             ----HHHhhc-cCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence                000000 00111123456778999999999999999999999864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.3e-35  Score=278.07  Aligned_cols=204  Identities=16%  Similarity=0.164  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||+. |+
T Consensus        58 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~-~i  136 (321)
T 2a2a_A           58 SREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK-KI  136 (321)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3578999999999999999999884443     34999998654444444567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCC----CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFDDDV----NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+||+++.++    .+||+|||++......   ....||+.|+|||++.+..++.++||||||+++|+|+||..
T Consensus       137 vH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  216 (321)
T 2a2a_A          137 AHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  216 (321)
T ss_dssp             ECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC
T ss_pred             ecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCC
Confidence            9999999999999888    7999999999876543   34468999999999998899999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.+...............  ......+...+..+.+||.+||+.||.+|||+.+++.+
T Consensus       217 pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          217 PFLGDTKQETLANITSVSY--DFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             SSCCSSHHHHHHHHHTTCC--CCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHhccc--ccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            9866432211111110000  00011123456789999999999999999999999873

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=5.2e-36  Score=277.10  Aligned_cols=214  Identities=12%  Similarity=0.129  Sum_probs=165.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-ee--cc---ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FM--FQ---IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~--~~---~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++..++|++++..+ ..  ..   .+||||+.+++...+......+++..++.++.||+.||.|||++ |
T Consensus        47 ~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  125 (296)
T 3uzp_A           47 KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK-N  125 (296)
T ss_dssp             SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            346799999999999998754443 11  11   35999997677777665567899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEE---CCCCCeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           90 ALYHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        90 ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      ++||||||+|||+   +.++.+||+|||++......           ....||+.|+|||.+.+..++.++|||||||++
T Consensus       126 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  205 (296)
T 3uzp_A          126 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  205 (296)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHH
Confidence            9999999999999   48889999999999875432           234689999999999998999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCC
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE  231 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~  231 (401)
                      |+|+||+.||....... .......+.......   ..+..++.++.+++.+||+.||.+|||+.+|++.|+.+.....
T Consensus       206 ~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          206 MYFNLGSLPWQGLKAAT-KRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             HHHHHSSCTTSSCCCSS-SSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCCCcCchh-hhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence            99999999986521100 000001111111110   1124467789999999999999999999999999998876543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=282.20  Aligned_cols=202  Identities=15%  Similarity=0.211  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHHhhhCC--CeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           17 STYFIVSLVLIASMSS--FILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h--~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .+.|.+|+.++.+++|  |||+.++..+.     .+||||..+++...+. ....+++..+..++.||+.||.|||++ |
T Consensus        51 ~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~al~~lH~~-~  128 (343)
T 3dbq_A           51 LDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQH-G  128 (343)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCSEEHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEeCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4678999999999987  89999885433     3499976666666554 456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-----------CccCCCCcchhhH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-----------GRVTPESVMYSFG  152 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~slG  152 (401)
                      |+||||||+|||++ ++.+||+|||+++.....      ....||+.|+|||++.+           ..++.++||||||
T Consensus       129 iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG  207 (343)
T 3dbq_A          129 IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLG  207 (343)
T ss_dssp             CCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHH
T ss_pred             eecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHH
Confidence            99999999999997 678999999999875432      23468999999999865           6688999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |++|+|++|+.||.......   .....+.++.....++...+.++.+||.+||+.||.+|||+.+++++.+
T Consensus       208 ~il~ell~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~  276 (343)
T 3dbq_A          208 CILYYMTYGKTPFQQIINQI---SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY  276 (343)
T ss_dssp             HHHHHHHHSSCTTTTCCSHH---HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HHHHHHHhCCCcchhhhhHH---HHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCcc
Confidence            99999999999986532111   1122233333344556666788999999999999999999999997644

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-35  Score=281.63  Aligned_cols=203  Identities=13%  Similarity=0.186  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.+.+|+.+++.++||||++++..+.           .+||||+.+++...+..  ..+++..+..++.||+.||.||
T Consensus        67 ~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~L  144 (367)
T 1cm8_A           67 FAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYI  144 (367)
T ss_dssp             HHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecCCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999998874332           45999996666555543  5699999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. ||+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..++.++||||+||++|||++|+
T Consensus       145 H~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  223 (367)
T 1cm8_A          145 HAA-GIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK  223 (367)
T ss_dssp             HHT-TEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             HHC-CccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999999876543 34578999999999987 67999999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc--------------------------ccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          163 HIPPSHALDLIRDRNIQ--------------------------TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      .||.+............                          ...... ........+..+.+|+.+||..||.+|||+
T Consensus       224 ~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~  302 (367)
T 1cm8_A          224 TLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKD-FASILTNASPLAVNLLEKMLVLDAEQRVTA  302 (367)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC-GGGTCTTCCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCC-HHHHCCCCCHHHHHHHHHHccCChhHCCCH
Confidence            99875422111000000                          000000 012234567889999999999999999999


Q ss_pred             HHHHHH
Q 015733          217 RSLVTA  222 (401)
Q Consensus       217 ~~vl~~  222 (401)
                      .+++++
T Consensus       303 ~e~l~h  308 (367)
T 1cm8_A          303 GEALAH  308 (367)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999884

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=270.60  Aligned_cols=199  Identities=15%  Similarity=0.192  Sum_probs=142.9

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.++++++||||+.++..+.     .+||||++++ +...+.....++++..++.++.|++.||.|||++ |+
T Consensus        55 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  133 (278)
T 3cok_A           55 VQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH-GI  133 (278)
T ss_dssp             HHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            367899999999999999999884443     3499999864 5555555557899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.+||+|||++......    ....+|+.|+|||.+.+..++.++||||||+++|+|++|..||.
T Consensus       134 ~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  213 (278)
T 3cok_A          134 LHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFD  213 (278)
T ss_dssp             ECSSCCGGGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999998875432    23468899999999998889999999999999999999999976


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......    ....+...  ....|..++.++.++|.+||+.||.+|||+.+++++
T Consensus       214 ~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          214 TDTVKN----TLNKVVLA--DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             CCSCC---------CCSS--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ChhHHH----HHHHHhhc--ccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence            532111    11111111  123456678889999999999999999999999864

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=279.38  Aligned_cols=195  Identities=19%  Similarity=0.215  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|.+|+.++.+++||||++++..+.     .+||||+.++ .+..+......+++..+..++.||+.||.|||++ |
T Consensus        72 ~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~  150 (335)
T 3dls_A           72 KLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK-D  150 (335)
T ss_dssp             TTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3457889999999999999999885444     3499999743 4444444566799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC---ccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++.++.+||+|||+++......   ...||+.|+|||++.+..+ +.++|||||||++|+|++|..||
T Consensus       151 ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  230 (335)
T 3dls_A          151 IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF  230 (335)
T ss_dssp             EECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             eEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCch
Confidence            9999999999999999999999999998765443   3568999999999988776 78999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .....          .....  ...+..++.++.+||.+||+.||.+|||+.++++.-
T Consensus       231 ~~~~~----------~~~~~--~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp  276 (335)
T 3dls_A          231 CELEE----------TVEAA--IHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDP  276 (335)
T ss_dssp             SSGGG----------GTTTC--CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCT
T ss_pred             hhHHH----------HHhhc--cCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence            64211          11111  123445678899999999999999999999999853

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=6.5e-36  Score=276.31  Aligned_cols=213  Identities=12%  Similarity=0.123  Sum_probs=165.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-eecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+.++..++|++++..+ .+..     .+||||+.+++...+......+++..+..++.||+.||.|||++ |
T Consensus        47 ~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~  125 (296)
T 4hgt_A           47 KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK-N  125 (296)
T ss_dssp             -CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            345789999999999998855544 2211     35999997777777665567799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEE---CCCCCeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           90 ALYHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        90 ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      |+||||||+|||+   +.++.+||+|||+++.....           ....||+.|+|||.+.+..++.++|||||||++
T Consensus       126 ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  205 (296)
T 4hgt_A          126 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  205 (296)
T ss_dssp             EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             eecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHH
Confidence            9999999999999   78899999999999875432           234679999999999998999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |+|++|..||........ ......+.......   .....++.++.+||.+||+.||.+|||+.+|++.|+.+....
T Consensus       206 ~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          206 MYFNLGSLPWQGLKAATK-RQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHSSCTTSSCCCSSS-SSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcccchhhh-hhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999865311100 00011111111111   112345778999999999999999999999999998887543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=9.2e-36  Score=289.54  Aligned_cols=205  Identities=14%  Similarity=0.129  Sum_probs=162.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +...|..|+.++..++||||+.++..++     .+|||||+|+ +...+......+++..+..++.||+.||.|||++ |
T Consensus       117 ~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~-g  195 (437)
T 4aw2_A          117 ETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL-H  195 (437)
T ss_dssp             TTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3455999999999999999999885544     3499999865 5555544467899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccc-----cCccCCCCcchhhHHHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~  159 (401)
                      ||||||||+|||++.++.+||+|||+++.....     ...+||+.|+|||++.     .+.++.++|||||||++|||+
T Consensus       196 iiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~ell  275 (437)
T 4aw2_A          196 YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEML  275 (437)
T ss_dssp             EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHH
T ss_pred             eEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHH
Confidence            999999999999999999999999999765433     2357899999999997     467899999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRE--RPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~--Rps~~~vl~~  222 (401)
                      ||+.||.+............... ....+.....++.++.+||.+||..+|++  ||++.+++++
T Consensus       276 tG~~Pf~~~~~~~~~~~i~~~~~-~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          276 YGETPFYAESLVETYGKIMNHKE-RFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             HSSCTTCCSSHHHHHHHHHTHHH-HCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             hCCCCCCCCChhHHHHhhhhccc-cccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            99999876543222211111100 00011122347889999999999888888  9999999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.3e-35  Score=277.80  Aligned_cols=206  Identities=15%  Similarity=0.250  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCC-cccccccC---------CCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSG---------ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~---------~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...|.+|+.++++++||||++++..+.     .+||||++| ++...+..         ...++++..++.++.||+.||
T Consensus        72 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  151 (322)
T 1p4o_A           72 RIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGM  151 (322)
T ss_dssp             HHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHH
Confidence            457999999999999999999885443     349999986 45444432         125679999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      .|||++ ||+||||||+||+++.++.+||+|||+++......      ...+|+.|+|||++.+..++.++||||||+++
T Consensus       152 ~~lH~~-~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  230 (322)
T 1p4o_A          152 AYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL  230 (322)
T ss_dssp             HHHHHT-TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHC-CCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHH
Confidence            999999 99999999999999999999999999988654321      23457889999999988899999999999999


Q ss_pred             HHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          156 LDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       156 ~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |+|+| |..||...........    +.. ......+..++..+.++|.+||+.||.+|||+.++++.|+....
T Consensus       231 ~el~~~g~~p~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          231 WEIATLAEQPYQGLSNEQVLRF----VME-GGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             HHHHHTSCCTTTTSCHHHHHHH----HHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHhcCCCccccCCHHHHHHH----HHc-CCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            99999 7777655322211111    111 11123456678889999999999999999999999999988754

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.1e-35  Score=270.31  Aligned_cols=203  Identities=13%  Similarity=0.112  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++.+++||||+.++..+.     ..||||++|+.+.........+++..+..++.|++.||.|||++ |++
T Consensus        49 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~  127 (284)
T 3kk8_A           49 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN-GIV  127 (284)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CcC
Confidence            367889999999999999999885444     34999999754433333446799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCC---eEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFDDDVN---PRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||||+||+++.++.   +||+|||++.......   ...||+.|+|||.+.+..++.++||||||+++|+|++|..||
T Consensus       128 H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf  207 (284)
T 3kk8_A          128 HRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF  207 (284)
T ss_dssp             CSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             cCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCC
Confidence            9999999999986655   9999999998765443   356899999999999989999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..................  ........++..+.+|+.+||+.||.+|||+.+++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          208 WDEDQHRLYAQIKAGAYD--YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             CCSSHHHHHHHHHHTCCC--CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCCchhHHHHHHHhcccc--CCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            664332221111111100  1111224567889999999999999999999999874

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=3.2e-35  Score=280.96  Aligned_cols=204  Identities=14%  Similarity=0.174  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+.+|+.+++.++||||++++..+.           .+||||+++++...+.   ..+++..+..++.||+.||.||
T Consensus        67 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~l  143 (371)
T 2xrw_A           67 HAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ---MELDHERMSYLLYQMLCGIKHL  143 (371)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSEEHHHHHH---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCCCCHHHHHh---hccCHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999884331           4599999988777664   3589999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ ||+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       144 H~~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  222 (371)
T 2xrw_A          144 HSA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG  222 (371)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             HHC-CeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhC
Confidence            999 9999999999999999999999999999876543   345689999999999998899999999999999999999


Q ss_pred             CCCCCchhhHHhhhcccccc---------------------------------ccccccC---CCChHHHHHHHHHHHHh
Q 015733          162 KHIPPSHALDLIRDRNIQTL---------------------------------TDSCLEG---QFSSDEGTELVRLASRC  205 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~---~~~~~~~~~l~~li~~c  205 (401)
                      ..||.+.............+                                 ......+   ..+...+..+.+||.+|
T Consensus       223 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~m  302 (371)
T 2xrw_A          223 GVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKM  302 (371)
T ss_dssp             SCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHH
Confidence            99987643211100000000                                 0000000   00123477899999999


Q ss_pred             cccCCCCCCCHHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~l  223 (401)
                      |+.||.+|||+.+++++-
T Consensus       303 L~~dP~~R~t~~e~l~hp  320 (371)
T 2xrw_A          303 LVIDASKRISVDEALQHP  320 (371)
T ss_dssp             SCSSGGGSCCHHHHHHSH
T ss_pred             CcCChhhCCCHHHHhCCc
Confidence            999999999999999843

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1e-35  Score=279.26  Aligned_cols=205  Identities=15%  Similarity=0.163  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....+.+|+.++..+. ||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |
T Consensus        48 ~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~  126 (325)
T 3kn6_A           48 MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDV-G  126 (325)
T ss_dssp             GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            3467889999999997 999999885444     34999999754444444557899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCC---CeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDV---NPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~---~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+||||||+|||++.++   .+||+|||+++.....    ....+|+.|+|||++.+..++.++|||||||++|+|++|.
T Consensus       127 ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~  206 (325)
T 3kn6_A          127 VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQ  206 (325)
T ss_dssp             EECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCC
Confidence            99999999999998765   7999999999865433    3456799999999999889999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCC--CC----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQ--FS----SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||........ ......+......+.  ++    ..++.++.+||.+||+.||.+|||+.+++.+
T Consensus       207 ~pf~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          207 VPFQSHDRSLT-CTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             CTTC--------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred             CCCCCCccccc-cccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence            99865422110 001111111111111  11    2467889999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=275.84  Aligned_cols=206  Identities=14%  Similarity=0.190  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||++++..+.     .+||||++++++..+......+++..+..++.|++.||.|||++ |+
T Consensus        45 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~-~i  123 (311)
T 4agu_A           45 IKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH-NC  123 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3577889999999999999999885443     34999999877666665667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+||+++.++.+||+|||++......    ....+|+.|+|||++.+ ..++.++||||||+++|+|+||..||
T Consensus       124 vH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~  203 (311)
T 4agu_A          124 IHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLW  203 (311)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             cCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999875532    23467899999999986 56899999999999999999999998


Q ss_pred             CchhhHHhhhcccc---c-------------------cccccccCC---CChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          166 PSHALDLIRDRNIQ---T-------------------LTDSCLEGQ---FSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       166 ~~~~~~~~~~~~~~---~-------------------~~~~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      .+............   .                   +.++.....   ..+.++..+.+||.+||+.||.+|||+.+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell  283 (311)
T 4agu_A          204 PGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLL  283 (311)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHh
Confidence            66432111000000   0                   000000000   0134677899999999999999999999998


Q ss_pred             HH
Q 015733          221 TA  222 (401)
Q Consensus       221 ~~  222 (401)
                      ++
T Consensus       284 ~h  285 (311)
T 4agu_A          284 HH  285 (311)
T ss_dssp             TS
T ss_pred             cC
Confidence            74

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=269.97  Aligned_cols=201  Identities=14%  Similarity=0.189  Sum_probs=162.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec--c-----ccEeeecCCcccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF--Q-----IPSYEFHCLTFSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~--~-----~~v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ....|.+|+.++.+++||||+.++..+  .     .+||||+++++...+.. ....+++..+..++.||+.||.|||++
T Consensus        49 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  128 (305)
T 2wtk_C           49 GEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ  128 (305)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC
Confidence            357899999999999999999988543  1     35999999876555543 356799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCc--cCCCCcchhhHHHHHHHH
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~  159 (401)
                       |++||||||+||+++.++.+||+|||++......      ....||+.|+|||++.+..  .+.++||||||+++|+|+
T Consensus       129 -~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~  207 (305)
T 2wtk_C          129 -GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNIT  207 (305)
T ss_dssp             -TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHH
T ss_pred             -CeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHH
Confidence             9999999999999999999999999999875432      2345789999999998643  477999999999999999


Q ss_pred             hCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      +|..||...........    +...  ...++..++..+.++|.+||+.||.+|||+.+++++-
T Consensus       208 ~g~~p~~~~~~~~~~~~----i~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~  265 (305)
T 2wtk_C          208 TGLYPFEGDNIYKLFEN----IGKG--SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHS  265 (305)
T ss_dssp             HSSCSCCCSSHHHHHHH----HHHC--CCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSH
T ss_pred             hCCCCCCCchHHHHHHH----HhcC--CCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCc
Confidence            99999876432211111    1111  1234566788899999999999999999999999753

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=4.8e-35  Score=268.12  Aligned_cols=198  Identities=17%  Similarity=0.186  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++ |++
T Consensus        50 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~  128 (277)
T 3f3z_A           50 VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL-NVA  128 (277)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            578999999999999999999885444     34999998754443333456799999999999999999999999 999


Q ss_pred             eccCCCCCEEE---CCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||||+||++   +.++.+||+|||++......   ....+|+.|+|||.+.+ .++.++||||||+++|+|+||..||
T Consensus       129 H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~  207 (277)
T 3f3z_A          129 HRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPF  207 (277)
T ss_dssp             CCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCC
Confidence            99999999999   78899999999999875443   34568999999999875 5899999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCCh----HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSS----DEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .............    ..  ...++.    .++..+.+||.+||+.||.+|||+.+++++
T Consensus       208 ~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          208 SAPTDSEVMLKIR----EG--TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             CCSSHHHHHHHHH----HC--CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CCCCHHHHHHHHH----hC--CCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            6543221111111    10  011222    357889999999999999999999999863

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.1e-35  Score=286.35  Aligned_cols=202  Identities=17%  Similarity=0.168  Sum_probs=157.9

Q ss_pred             HHHHHHHHhhhCCCeEEEeeeec-----------cccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           20 FIVSLVLIASMSSFILLAVIFMF-----------QIPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        20 f~~E~~~l~~~~h~niv~~~~~~-----------~~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+|+.+++.++||||++++..+           ..+||||+++++...+.   .....+++..+..++.||+.||.|||
T Consensus        79 ~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH  158 (394)
T 4e7w_A           79 KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH  158 (394)
T ss_dssp             CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34799999999999999987443           23599999987655443   23567999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEEC-CCCCeEEecccCccccCCC---CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHh
Q 015733           86 SKERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++ ||+||||||+|||++ .++.+||+|||+++.....   ....+|+.|+|||++.+. .++.++|||||||++|||++
T Consensus       159 ~~-~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~  237 (394)
T 4e7w_A          159 SI-GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQ  237 (394)
T ss_dssp             HT-TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             HC-CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHh
Confidence            99 999999999999999 7999999999999875433   345789999999998764 58999999999999999999


Q ss_pred             CCCCCCchhhHHhhhcccc-----------------------ccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          161 GKHIPPSHALDLIRDRNIQ-----------------------TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      |+.||.+............                       ......+...++...+.++.+||.+||+.||.+|||+.
T Consensus       238 g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  317 (394)
T 4e7w_A          238 GQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAI  317 (394)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHH
Confidence            9999876432111000000                       00000001112344678999999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++.+
T Consensus       318 e~l~h  322 (394)
T 4e7w_A          318 EALCH  322 (394)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.6e-35  Score=275.84  Aligned_cols=215  Identities=15%  Similarity=0.159  Sum_probs=160.0

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      .....|.+|+.++++++||||+.++..+.     .+||||++++ +...+..   ....+++..++.++.|++.||.|||
T Consensus        74 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  153 (310)
T 2wqm_A           74 KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH  153 (310)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence            34578999999999999999999884433     3499999974 4444432   4567999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +. |++||||||+||+++.++.+||+|||++......    ....+++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       154 ~~-~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g  232 (310)
T 2wqm_A          154 SR-RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL  232 (310)
T ss_dssp             HT-TCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             hC-CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhC
Confidence            99 9999999999999999999999999998765433    234678999999999988899999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCCCC
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV  232 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~~~  232 (401)
                      ..||.+.......  ....+.........+..++.++.+||.+||+.||.+|||+.+|++.|+.+......
T Consensus       233 ~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~  301 (310)
T 2wqm_A          233 QSPFYGDKMNLYS--LCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS  301 (310)
T ss_dssp             SCTTC---CCHHH--HHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCcccchhHHH--HHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence            9998653211100  00011111111112345678899999999999999999999999999999765443

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=278.45  Aligned_cols=212  Identities=16%  Similarity=0.245  Sum_probs=168.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++++++||||+.++....       .+||||+++ ++...+......+++..++.++.||+.||.|||+.
T Consensus        85 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  164 (326)
T 2w1i_A           85 HLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK  164 (326)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3468999999999999999998874321       359999986 56555555556799999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       |++||||||+||+++.++.+||+|||++.......       ...++..|+|||.+.+..++.++||||||+++|+|+|
T Consensus       165 -~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  243 (326)
T 2w1i_A          165 -RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT  243 (326)
T ss_dssp             -TEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHH
T ss_pred             -CEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHh
Confidence             99999999999999999999999999998765432       2345678999999998889999999999999999999


Q ss_pred             CCCCCCchhhHHhh---hc--------cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          161 GKHIPPSHALDLIR---DR--------NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       161 g~~p~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |..|+.........   ..        .+...+........+..++.++.+||.+||+.||.+|||+.+|++.|+.+..
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          244 YIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             TTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            99876543211110   00        1111122222334567788999999999999999999999999999988754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=278.87  Aligned_cols=203  Identities=13%  Similarity=0.236  Sum_probs=157.8

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      .+.+|+.++.+++||||+.++..+.     .+||||++|++...+......+++..+..++.||+.||.|||++ ||+||
T Consensus        46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~  124 (324)
T 3mtl_A           46 TAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ-KVLHR  124 (324)
T ss_dssp             CCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TEEES
T ss_pred             hHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CccCC
Confidence            5678999999999999999885443     34999999988887776677899999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      ||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+ ..++.++|||||||++|+|+||..||.+.
T Consensus       125 Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (324)
T 3mtl_A          125 DLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS  204 (324)
T ss_dssp             SCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999998865432    23467999999999886 56899999999999999999999998764


Q ss_pred             hhHHhhhccccc-----------ccc---------cccc----CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          169 ALDLIRDRNIQT-----------LTD---------SCLE----GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       169 ~~~~~~~~~~~~-----------~~~---------~~~~----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ............           ...         +...    ......++.++.+||.+||+.||.+|||+.+++++
T Consensus       205 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          205 TVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             SHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            322111110000           000         0000    00122456789999999999999999999999874

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=275.04  Aligned_cols=211  Identities=17%  Similarity=0.172  Sum_probs=164.8

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCC-cccccccC---CCCCCCHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSG---ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~---~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.|.+|+.++..++||||++++..+.         ..||||+++ ++...+..   ...++++..++.++.||+.||
T Consensus        68 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L  147 (317)
T 2buj_A           68 QDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGL  147 (317)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            34678999999999999999998874332         359999997 44444432   467899999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-------------CccccccccCCccccccCc---cCCC
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------------RSYSTNLAFTPPEYLRTGR---VTPE  145 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~---~~~~  145 (401)
                      .|||++ |++||||||+||+++.++.+||+|||++......             ....||+.|+|||.+.+..   ++.+
T Consensus       148 ~~LH~~-~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  226 (317)
T 2buj_A          148 EAIHAK-GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER  226 (317)
T ss_dssp             HHHHHT-TEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTH
T ss_pred             HHHHhC-CcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCch
Confidence            999999 9999999999999999999999999998764321             1124689999999987543   7899


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      +||||||+++|+|++|..||......   ................+..++..+.++|.+||+.||.+|||+.++++.|+.
T Consensus       227 ~Di~slG~il~el~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  303 (317)
T 2buj_A          227 TDVWSLGCVLYAMMFGEGPYDMVFQK---GDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEA  303 (317)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTHHHHHT---TSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhCCCChhhhhcc---cchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhh
Confidence            99999999999999999987432110   111111111122223345677889999999999999999999999999998


Q ss_pred             cccC
Q 015733          226 LQKD  229 (401)
Q Consensus       226 ~~~~  229 (401)
                      +...
T Consensus       304 ~~~~  307 (317)
T 2buj_A          304 LQPP  307 (317)
T ss_dssp             TCCC
T ss_pred             cCCC
Confidence            8653

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.2e-35  Score=296.03  Aligned_cols=204  Identities=18%  Similarity=0.253  Sum_probs=164.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....+.+|+.++.+++||||+.++..++     .+||||++|+.+ ..+.. ....+++..++.++.||+.||.|||++ 
T Consensus       227 ~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~-  305 (576)
T 2acx_A          227 GEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE-  305 (576)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            4567899999999999999999985554     349999987544 44433 234599999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||+||||||+|||++.+|.+||+|||+++.....   ...+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       306 gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF  385 (576)
T 2acx_A          306 RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF  385 (576)
T ss_dssp             TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred             CEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999876543   2457899999999999888999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      ........... +...+. .....++...+.++.+||.+||+.||.+||     ++.+|+++
T Consensus       386 ~~~~~~~~~~~-i~~~i~-~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          386 QQRKKKIKREE-VERLVK-EVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             SCSSSCCCHHH-HHHHHH-HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             cccccchhHHH-HHHHhh-cccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence            75421100000 111111 112345677889999999999999999999     67888764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=283.25  Aligned_cols=213  Identities=13%  Similarity=0.099  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEe---------------e---ee---ccccEeeecCCcccccccCC-CCCCCHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAV---------------I---FM---FQIPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVAL   75 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~---------------~---~~---~~~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~   75 (401)
                      ..|.+|+.++.+++|||++++               +   ..   ...+||||+.++|...+... ...+++..++.++.
T Consensus        87 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~  166 (352)
T 2jii_A           87 GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVAC  166 (352)
T ss_dssp             STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHH
Confidence            579999999999999998862               2   11   11459999955566555433 47799999999999


Q ss_pred             HHHHHHHHHhcCCCceeccCCCCCEEECCCC--CeEEecccCccccCCC-----------CccccccccCCccccccCcc
Q 015733           76 HIAEALEYCTSKERALYHDLNAYRIVFDDDV--NPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRV  142 (401)
Q Consensus        76 qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~--~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~  142 (401)
                      ||+.||.|||++ ||+||||||+|||++.++  .+||+|||+++.....           ....||+.|+|||++.+..+
T Consensus       167 qi~~~L~~LH~~-~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  245 (352)
T 2jii_A          167 RLLDALEFLHEN-EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGP  245 (352)
T ss_dssp             HHHHHHHHHHHT-TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHhC-CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCC
Confidence            999999999999 999999999999999998  8999999999764321           23468899999999998899


Q ss_pred             CCCCcchhhHHHHHHHHhCCCCCCchhhH--Hhhhcc--cccccccccc-CCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          143 TPESVMYSFGTLLLDLLSGKHIPPSHALD--LIRDRN--IQTLTDSCLE-GQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       143 ~~~~Dv~slG~~l~el~tg~~p~~~~~~~--~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      +.++|||||||++|||+||+.||......  ......  .......... ......++..+.+||.+||+.||.+|||+.
T Consensus       246 ~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  325 (352)
T 2jii_A          246 SRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYA  325 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHH
Confidence            99999999999999999999998654211  000000  0000000000 001124578899999999999999999999


Q ss_pred             HHHHHHHccccCCC
Q 015733          218 SLVTALVTLQKDTE  231 (401)
Q Consensus       218 ~vl~~l~~~~~~~~  231 (401)
                      +|++.|+.+.....
T Consensus       326 ~l~~~L~~~~~~~~  339 (352)
T 2jii_A          326 MLRNNLEALLQDLR  339 (352)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999998876543

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.3e-35  Score=283.61  Aligned_cols=203  Identities=15%  Similarity=0.208  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHhhhCC--CeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSS--FILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h--~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++.+++|  |||+.++....     .+|||+..+++...+. ....+++..+..++.||+.||.|||++ 
T Consensus        97 ~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~lH~~-  174 (390)
T 2zmd_A           97 TLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQH-  174 (390)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHH-HCSSCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEecCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            34789999999999974  99999884333     3499965566666554 345789999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-----------CccCCCCcchhh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-----------GRVTPESVMYSF  151 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~sl  151 (401)
                      ||+||||||+|||++ ++.+||+|||+++.....      ....||+.|+|||++.+           ..++.++|||||
T Consensus       175 ~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSl  253 (390)
T 2zmd_A          175 GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  253 (390)
T ss_dssp             TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHH
T ss_pred             CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHH
Confidence            999999999999996 589999999999875432      24568999999999875           368889999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ||++|||++|..||.......   ..+..+.++.....++...+.++.+||.+||+.||.+|||+.+++++.+
T Consensus       254 Gvil~ell~G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~  323 (390)
T 2zmd_A          254 GCILYYMTYGKTPFQQIINQI---SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY  323 (390)
T ss_dssp             HHHHHHHHHSSCTTTTCCCHH---HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HHHHHHHHHCCCcchhhhHHH---HHHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcC
Confidence            999999999999986532111   1122233333333455556778999999999999999999999997543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=7.2e-35  Score=266.64  Aligned_cols=203  Identities=12%  Similarity=0.053  Sum_probs=160.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.+++.++||||++++....     .+||||++++.+..+......+++..+..++.|++.||.|||++ |+
T Consensus        48 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i  126 (276)
T 2yex_A           48 CPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI-GI  126 (276)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            3478999999999999999999884433     35999999755544555567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCC------CCccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD------GRSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+||+++.++.+||+|||++.....      .....|++.|+|||.+.+..+ +.++||||||+++|+|++|..
T Consensus       127 ~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  206 (276)
T 2yex_A          127 THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL  206 (276)
T ss_dssp             ECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             eccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999876432      134568899999999987664 779999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.........   .................+..+.+||.+||+.||.+|||+.+++++
T Consensus       207 p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          207 PWDQPSDSCQE---YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             CCSCSCTTSHH---HHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCCCCchHHHH---HHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence            98653211000   000111111111234567889999999999999999999999864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.6e-35  Score=287.43  Aligned_cols=204  Identities=19%  Similarity=0.213  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeec-----------cccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMF-----------QIPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~-----------~~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ..+.+|+.++++++||||+.++..+           -.+||||+++++...+.   .....+++..+..++.||+.||.|
T Consensus        92 ~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~  171 (420)
T 1j1b_A           92 RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY  171 (420)
T ss_dssp             TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            3445799999999999999986333           13599999987655443   346789999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCC-CCeEEecccCccccCCC---CccccccccCCccccccC-ccCCCCcchhhHHHHHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~-~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el  158 (401)
                      ||++ ||+||||||+|||++.+ +.+||+|||+++.....   ....+|+.|+|||++.+. .++.++|||||||++|||
T Consensus       172 LH~~-~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el  250 (420)
T 1j1b_A          172 IHSF-GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAEL  250 (420)
T ss_dssp             HHTT-TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             HHHC-CccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHH
Confidence            9999 99999999999999965 56899999999875432   345789999999999764 789999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhcccc------------------cccccc-----ccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          159 LSGKHIPPSHALDLIRDRNIQ------------------TLTDSC-----LEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~------------------~~~~~~-----~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ++|+.||.+............                  ....+.     +...++...+.++.+||.+||+.||.+|||
T Consensus       251 l~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t  330 (420)
T 1j1b_A          251 LLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT  330 (420)
T ss_dssp             HHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCC
Confidence            999999876432111000000                  000000     001123456788999999999999999999


Q ss_pred             HHHHHHH
Q 015733          216 PRSLVTA  222 (401)
Q Consensus       216 ~~~vl~~  222 (401)
                      +.+++.+
T Consensus       331 ~~e~l~h  337 (420)
T 1j1b_A          331 PLEACAH  337 (420)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhCC
Confidence            9999874

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.6e-35  Score=282.02  Aligned_cols=205  Identities=13%  Similarity=0.177  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeec-----c-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMF-----Q-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~-----~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      .+.|.+|+.++.+++||||++++..+     .     .+||||++|++...+......+++..+..++.||+.||.|||+
T Consensus        73 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  152 (362)
T 3pg1_A           73 CKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE  152 (362)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999887443     1     4599999998888888777789999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      + ||+||||||+|||++.++.+||+|||+++.....   ....+|+.|+|||++.+ ..++.++|||||||++|+|++|+
T Consensus       153 ~-~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~  231 (362)
T 3pg1_A          153 A-GVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRK  231 (362)
T ss_dssp             T-TCCCCCCCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSS
T ss_pred             C-cCEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCC
Confidence            9 9999999999999999999999999999764432   34567899999999887 67899999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-------------------cccccccc-------CCCChHHHHHHHHHHHHhcccCCCCCCCH
Q 015733          163 HIPPSHALDLIRDRNIQ-------------------TLTDSCLE-------GQFSSDEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-------------------~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      .||.+............                   ........       ...+...+..+.+||.+||+.||.+|||+
T Consensus       232 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  311 (362)
T 3pg1_A          232 ALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRIST  311 (362)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCH
Confidence            99876432111100000                   00000000       01123456789999999999999999999


Q ss_pred             HHHHHH
Q 015733          217 RSLVTA  222 (401)
Q Consensus       217 ~~vl~~  222 (401)
                      .+++++
T Consensus       312 ~ell~h  317 (362)
T 3pg1_A          312 EQALRH  317 (362)
T ss_dssp             HHHHTS
T ss_pred             HHHHcC
Confidence            999874

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.7e-35  Score=278.46  Aligned_cols=206  Identities=14%  Similarity=0.223  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++.+++||||+.++..+.     .+||||++++++..+......+++..+..++.||+.||.|||+. |+
T Consensus        67 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~i  145 (331)
T 4aaa_A           67 VKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH-NI  145 (331)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            3567889999999999999999885443     34999999887776655567799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      +||||||+||+++.++.+||+|||+++.....    ....+|+.|+|||++.+. .++.++|||||||++|+|++|..||
T Consensus       146 vH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  225 (331)
T 4aaa_A          146 IHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLF  225 (331)
T ss_dssp             CCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             EccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999765432    335689999999999875 6899999999999999999999998


Q ss_pred             CchhhHHhhhcc--------------------ccccccccccCC-----CChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          166 PSHALDLIRDRN--------------------IQTLTDSCLEGQ-----FSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       166 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ............                    ......+.....     ..+.++..+.+||.+||+.||.+|||+.+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell  305 (331)
T 4aaa_A          226 PGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL  305 (331)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             CCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHh
Confidence            654321110000                    000000000000     1124678899999999999999999999998


Q ss_pred             HH
Q 015733          221 TA  222 (401)
Q Consensus       221 ~~  222 (401)
                      ++
T Consensus       306 ~h  307 (331)
T 4aaa_A          306 HH  307 (331)
T ss_dssp             GS
T ss_pred             cC
Confidence            74

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=7.5e-35  Score=282.67  Aligned_cols=200  Identities=14%  Similarity=0.135  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      ..|.+|+.++.+++||||++++..+.    .+||||++|+.+..+......+++..+..++.|++.||.|||++ ||+||
T Consensus       185 ~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHr  263 (419)
T 3i6u_A          185 LNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN-GIIHR  263 (419)
T ss_dssp             CCHHHHHHHHHHCCCTTBCCCCEEEESSEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCS
T ss_pred             HHHHHHHHHHHhCCCCCEeeEEEEEecCceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ccccc
Confidence            36889999999999999999884443    34999999765554445667899999999999999999999999 99999


Q ss_pred             cCCCCCEEECCCC---CeEEecccCccccCCC---CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhCCCC
Q 015733           94 DLNAYRIVFDDDV---NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        94 dlk~~Nill~~~~---~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||+|||++.++   .+||+|||+++.....   ....||+.|+|||++.+   ..++.++|||||||++|+|+||..|
T Consensus       264 Dlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~p  343 (419)
T 3i6u_A          264 DLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP  343 (419)
T ss_dssp             CCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence            9999999997544   5999999999876543   34578999999999864   5678899999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |......    ......+......   .....++..+.+||.+||+.||.+|||+.+++++
T Consensus       344 f~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          344 FSEHRTQ----VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             SCCCSSS----CCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCcch----HHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            8653211    0010111100000   0112357789999999999999999999999874

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=2.8e-35  Score=292.40  Aligned_cols=203  Identities=16%  Similarity=0.218  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccC---CCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSG---ETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ....+.+|+.++.+++||||+.++..++     .+||||++|+.+ ..+..   ....+++..+..++.||+.||.|||+
T Consensus       228 ~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~  307 (543)
T 3c4z_A          228 GYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ  307 (543)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999885544     349999997544 33332   24579999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      + ||+||||||+|||++.+|.+||+|||+++.....    ...+||+.|+|||++.+..++.++|||||||++|||+||.
T Consensus       308 ~-gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~  386 (543)
T 3c4z_A          308 R-NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR  386 (543)
T ss_dssp             T-TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred             c-CCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCC
Confidence            9 9999999999999999999999999999875443    2347999999999999989999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP-----RSLVT  221 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~-----~~vl~  221 (401)
                      .||...............+...  ...+|..++..+.+||.+||+.||.+||++     .+|+.
T Consensus       387 ~PF~~~~~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          387 GPFRARGEKVENKELKQRVLEQ--AVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             CSSCCTTCCCCHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             CCCCCCccchhHHHHHHHHhhc--ccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence            9987542110000111111111  224567788999999999999999999975     66664

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.2e-35  Score=271.39  Aligned_cols=198  Identities=13%  Similarity=0.156  Sum_probs=159.9

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCC-cccccccCC---CCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGE---TQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...++.+|+..+.++ +||||+.++..+.     .+||||++| ++...+...   ...+++..++.++.||+.||.|||
T Consensus        53 ~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH  132 (289)
T 1x8b_A           53 DEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH  132 (289)
T ss_dssp             HHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999 9999999885443     349999987 455544322   267999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCC-------------------CCeEEecccCccccCCCCccccccccCCccccccC-ccCCC
Q 015733           86 SKERALYHDLNAYRIVFDDD-------------------VNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTG-RVTPE  145 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~-------------------~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~  145 (401)
                      ++ ||+||||||+||+++.+                   ..+||+|||++..........||+.|+|||.+.+. .++.+
T Consensus       133 ~~-~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  211 (289)
T 1x8b_A          133 SM-SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPK  211 (289)
T ss_dssp             HT-TEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHH
T ss_pred             hC-CEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCch
Confidence            99 99999999999999844                   47999999999988777777899999999999875 56789


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|||||||++|+|++|..++......       ..+.. .....++..++..+.++|.+||+.||.+|||+.+++++
T Consensus       212 ~Di~slG~il~~l~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          212 ADIFALALTVVCAAGAEPLPRNGDQW-------HEIRQ-GRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCSSSHHH-------HHHHT-TCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             hhHHHHHHHHHHHhcCCCCCcchhHH-------HHHHc-CCCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence            99999999999999998765433211       11111 11234556678899999999999999999999999874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.4e-35  Score=282.94  Aligned_cols=203  Identities=18%  Similarity=0.211  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeec-------------------------------------------cccEeeecCCcc
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMF-------------------------------------------QIPSYEFHCLTF   54 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~-------------------------------------------~~~v~Ey~~~~l   54 (401)
                      ..+.+|+.+++.++||||++++..+                                           ..+||||++|++
T Consensus        45 ~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L  124 (383)
T 3eb0_A           45 RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTL  124 (383)
T ss_dssp             TSCCHHHHHHTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCSEEH
T ss_pred             chHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCCccH
Confidence            3455799999999999999988443                                           235999999875


Q ss_pred             ccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEC-CCCCeEEecccCccccCCC---Ccccc
Q 015733           55 SNNFS---GETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG---RSYST  127 (401)
Q Consensus        55 ~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~---~~~~~  127 (401)
                      ...+.   .....+++..+..++.||+.||.|||++ ||+||||||+|||++ .++.+||+|||+++.....   ....+
T Consensus       125 ~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  203 (383)
T 3eb0_A          125 HKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYIC  203 (383)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCccc
Confidence            55443   3567899999999999999999999999 999999999999997 6889999999999865433   34567


Q ss_pred             ccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccc-----------------------cccc
Q 015733          128 NLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQ-----------------------TLTD  183 (401)
Q Consensus       128 ~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~-----------------------~~~~  183 (401)
                      |+.|+|||.+.+. .++.++||||+||++|||++|+.||.+............                       ....
T Consensus       204 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  283 (383)
T 3eb0_A          204 SRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKA  283 (383)
T ss_dssp             CSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCC
T ss_pred             CCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCc
Confidence            9999999998874 589999999999999999999999876432111101000                       0001


Q ss_pred             ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          184 SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       184 ~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ..+...++...+.++.+||.+||+.||.+|||+.++++
T Consensus       284 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          284 KDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            11111245557888999999999999999999999986

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=284.41  Aligned_cols=204  Identities=16%  Similarity=0.132  Sum_probs=159.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+.|..|+.++..++||||+.++..++     .+||||++|+ +...+...+..+++..+..++.||+.||.|||++ |
T Consensus       104 ~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-g  182 (412)
T 2vd5_A          104 EVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL-G  182 (412)
T ss_dssp             GGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4566899999999999999999985555     3599999865 4444443345799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccc-------cCccCCCCcchhhHHHHHH
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLR-------TGRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-------~~~~~~~~Dv~slG~~l~e  157 (401)
                      |+||||||+|||++.++.+||+|||+++.....     ...+||+.|+|||++.       +..++.++|||||||++||
T Consensus       183 iiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilye  262 (412)
T 2vd5_A          183 YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYE  262 (412)
T ss_dssp             EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHH
T ss_pred             eeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHH
Confidence            999999999999999999999999999875443     2357899999999997       3568999999999999999


Q ss_pred             HHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCC---CCHHHHHHH
Q 015733          158 LLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER---PNPRSLVTA  222 (401)
Q Consensus       158 l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R---ps~~~vl~~  222 (401)
                      |++|+.||................ .....+..+..++.++.+||.+||. +|.+|   |++++|+.+
T Consensus       263 lltG~~Pf~~~~~~~~~~~i~~~~-~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          263 MFYGQTPFYADSTAETYGKIVHYK-EHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             HHHSSCTTCCSSHHHHHHHHHTHH-HHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             HHhCCCCCCCCCHHHHHHHHHhcc-cCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence            999999987653322211111100 0000111234578899999999999 99998   589999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=6.2e-36  Score=274.26  Aligned_cols=207  Identities=16%  Similarity=0.229  Sum_probs=163.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeec--c-----ccEeeecCC-cccccccC---CCCCCCHHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMF--Q-----IPSYEFHCL-TFSNNFSG---ETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~--~-----~~v~Ey~~~-~l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+.|.+|+.++++++||||+.++..+  .     .+||||++| ++...+..   ....+++..++.++.|++.||.|
T Consensus        47 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~  126 (279)
T 2w5a_A           47 AEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE  126 (279)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999988432  1     349999986 45444432   34569999999999999999999


Q ss_pred             HhcCCC-----ceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCccCCCCcchhhHHH
Q 015733           84 CTSKER-----ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH~~~~-----ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      ||+. |     ++||||||+||+++.++.+||+|||+++......    ...+++.|+|||.+.+..++.++||||||++
T Consensus       127 lH~~-~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  205 (279)
T 2w5a_A          127 CHRR-SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL  205 (279)
T ss_dssp             HHHH-C------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHH
T ss_pred             Hhcc-cCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHH
Confidence            9999 8     9999999999999999999999999988765443    2457899999999998889999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          155 LLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      +|+|+||..||...........    + .......++..++.++.++|.+||+.||.+|||+.+|++.++...
T Consensus       206 l~~l~~g~~p~~~~~~~~~~~~----i-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~  273 (279)
T 2w5a_A          206 LYELCALMPPFTAFSQKELAGK----I-REGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILE  273 (279)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHH----H-HHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred             HHHHHHCCCCCcccCHHHHHHH----H-hhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhh
Confidence            9999999999865432211111    1 111122455677889999999999999999999999998776543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.8e-35  Score=276.72  Aligned_cols=202  Identities=16%  Similarity=0.106  Sum_probs=154.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-----------------------------
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-----------------------------   60 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-----------------------------   60 (401)
                      ..+.|.+|+.++.+++||||++++..+.     .+||||++|+ +...+..                             
T Consensus        71 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (345)
T 3hko_A           71 DVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAI  150 (345)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccccccc
Confidence            3478999999999999999999885444     3499999865 4333320                             


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCC--CeEEecccCccccCC-------
Q 015733           61 ----------ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV--NPRLSCFGLMKNSRD-------  121 (401)
Q Consensus        61 ----------~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~--~~kl~Dfg~~~~~~~-------  121 (401)
                                ....+++..++.++.||+.||.|||++ ||+||||||+|||++.++  .+||+|||+++....       
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~  229 (345)
T 3hko_A          151 NGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ-GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYY  229 (345)
T ss_dssp             HSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC---
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHHHHHHHC-CccccCCChhhEEEecCCCceEEEeeccccccccccCccccc
Confidence                      022346788899999999999999999 999999999999998776  899999999986432       


Q ss_pred             -CCccccccccCCcccccc--CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcccccccccccc--CCCChHHHH
Q 015733          122 -GRSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLE--GQFSSDEGT  196 (401)
Q Consensus       122 -~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  196 (401)
                       .....||+.|+|||++.+  ..++.++|||||||++|||++|..||..........    .+......  ......++.
T Consensus       230 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  305 (345)
T 3hko_A          230 GMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTIS----QVLNKKLCFENPNYNVLSP  305 (345)
T ss_dssp             -----CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHCCCCTTSGGGGGSCH
T ss_pred             cccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHH----HHHhcccccCCcccccCCH
Confidence             124568999999999975  678999999999999999999999986643222111    11111111  111234678


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          197 ELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       197 ~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .+.+||.+||+.||.+|||+.+++++
T Consensus       306 ~~~~li~~~l~~~p~~Rps~~~~l~h  331 (345)
T 3hko_A          306 LARDLLSNLLNRNVDERFDAMRALQH  331 (345)
T ss_dssp             HHHHHHHHHSCSCTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            89999999999999999999999874

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3e-35  Score=276.52  Aligned_cols=204  Identities=13%  Similarity=0.198  Sum_probs=152.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.+.+|+.++++++||||+.++..+.     .+||||++|++...+. ....+++..+..++.||+.||.|||++ ||+
T Consensus        77 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~~~-~~~~~~~~~~~~i~~ql~~~l~~LH~~-~iv  154 (329)
T 3gbz_A           77 PGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMD-KNPDVSMRVIKSFLYQLINGVNFCHSR-RCL  154 (329)
T ss_dssp             ---CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             chhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCCCCHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhC-CEE
Confidence            467889999999999999999884443     3499999987766665 345699999999999999999999999 999


Q ss_pred             eccCCCCCEEEC-----CCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhC
Q 015733           92 YHDLNAYRIVFD-----DDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        92 H~dlk~~Nill~-----~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ||||||+|||++     .++.+||+|||+++.....    ....+|+.|+|||++.+. .++.++|||||||++|+|++|
T Consensus       155 H~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  234 (329)
T 3gbz_A          155 HRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMK  234 (329)
T ss_dssp             CSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHC
Confidence            999999999994     4556999999999865432    234679999999999874 489999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccc--c----------ccccC------------CCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLT--D----------SCLEG------------QFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~--~----------~~~~~------------~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      ..||...............+.  .          +.+..            ..+..++.++.+||.+||+.||.+|||+.
T Consensus       235 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  314 (329)
T 3gbz_A          235 TPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAK  314 (329)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHH
Confidence            999866432111111000000  0          00000            01122567899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++++
T Consensus       315 e~l~h  319 (329)
T 3gbz_A          315 NALEH  319 (329)
T ss_dssp             HHHTS
T ss_pred             HHhCC
Confidence            99874

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.8e-35  Score=276.44  Aligned_cols=208  Identities=18%  Similarity=0.254  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCC------CCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGET------QPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~------~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+|.+|+.++.+++||||+.++..+.     .+||||++|+ +...+....      ..+++..++.++.||+.||.|
T Consensus        76 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  155 (327)
T 2yfx_A           76 DELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY  155 (327)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999885443     3499999864 444443221      458999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECC---CCCeEEecccCccccCC------CCccccccccCCccccccCccCCCCcchhhHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRD------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      ||++ |++||||||+|||++.   +..+||+|||++.....      .....+++.|+|||.+.+..++.++||||||++
T Consensus       156 LH~~-~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  234 (327)
T 2yfx_A          156 LEEN-HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL  234 (327)
T ss_dssp             HHHT-TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HhhC-CeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHH
Confidence            9999 9999999999999984   44699999999875322      223456889999999998899999999999999


Q ss_pred             HHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          155 LLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       155 l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      +|+|+| |..||.........     ..+........+..++..+.+||.+||+.||.+|||+.++++.|+.+...
T Consensus       235 l~ellt~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          235 LWEIFSLGYMPYPSKSNQEVL-----EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             HHHHHTTSCCSSTTCCHHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCCCCCcCHHHHH-----HHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            999998 88887654322111     11111112334566788999999999999999999999999999988654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=282.70  Aligned_cols=212  Identities=9%  Similarity=0.066  Sum_probs=164.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGE---TQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      .+.+.+|+.++++++||||+.++..+.       .+||||++|+.+..+...   ...+++..++.++.||+.||.|||+
T Consensus        51 ~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  130 (396)
T 4eut_A           51 VDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE  130 (396)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999999884322       359999987544444332   2349999999999999999999999


Q ss_pred             CCCceeccCCCCCEEE----CCCCCeEEecccCccccCCC---CccccccccCCcccccc--------CccCCCCcchhh
Q 015733           87 KERALYHDLNAYRIVF----DDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT--------GRVTPESVMYSF  151 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~--------~~~~~~~Dv~sl  151 (401)
                      + ||+||||||+|||+    +.++.+||+|||+++.....   ....||+.|+|||++.+        ..++.++|||||
T Consensus       131 ~-~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSl  209 (396)
T 4eut_A          131 N-GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSI  209 (396)
T ss_dssp             T-TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred             C-CEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHH
Confidence            9 99999999999999    77888999999999876543   24568999999999875        567889999999


Q ss_pred             HHHHHHHHhCCCCCCchhh-----HHh---hhccccc----c---c--------cccccCCCChHHHHHHHHHHHHhccc
Q 015733          152 GTLLLDLLSGKHIPPSHAL-----DLI---RDRNIQT----L---T--------DSCLEGQFSSDEGTELVRLASRCLQY  208 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~-----~~~---~~~~~~~----~---~--------~~~~~~~~~~~~~~~l~~li~~cl~~  208 (401)
                      ||++|||+||..||.....     ...   .......    +   .        .......++..++..+.+++.+||+.
T Consensus       210 G~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~  289 (396)
T 4eut_A          210 GVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEA  289 (396)
T ss_dssp             HHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhcc
Confidence            9999999999999753211     000   0000000    0   0        00011234567889999999999999


Q ss_pred             CCCCCCCHHHHHHHHHccccC
Q 015733          209 EPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       209 ~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.+|||+.++++.+..+...
T Consensus       290 dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          290 DQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             CTTTSCCHHHHHHHHHHHHTC
T ss_pred             ChhhhccHHHHHHHHHHHhhc
Confidence            999999999999998877654

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=4.7e-35  Score=279.15  Aligned_cols=204  Identities=15%  Similarity=0.194  Sum_probs=147.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+.+|+.+++.++||||++++..+.           .+||||+.+++...+..  ..+++..+..++.||+.||.||
T Consensus        71 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~L  148 (367)
T 2fst_X           71 HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYI  148 (367)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCCEECC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEecccCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999884332           34899997666665543  5799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+. ||+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..++.++|||||||++|||++|+
T Consensus       149 H~~-givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  227 (367)
T 2fst_X          149 HSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  227 (367)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSS
T ss_pred             HHC-CeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999999875443 34578999999999987 67899999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-----------c--------cccccc---cC---CCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRNIQ-----------T--------LTDSCL---EG---QFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-----------~--------~~~~~~---~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||.+............           .        ......   ..   ......+..+.+||.+||+.||.+|||+.
T Consensus       228 ~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~  307 (367)
T 2fst_X          228 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA  307 (367)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHH
Confidence            99876432111000000           0        000000   00   01123467899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++.+
T Consensus       308 e~L~h  312 (367)
T 2fst_X          308 QALAH  312 (367)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.6e-34  Score=274.93  Aligned_cols=206  Identities=17%  Similarity=0.145  Sum_probs=158.2

Q ss_pred             hhHHHHHHHHHHhhhC-----CCeEEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS-----SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-----h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+..|+.++..++     ||||+.++..+.     .+||||+.+++...+... ...+++..+..++.||+.||.||
T Consensus        74 ~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L  153 (360)
T 3llt_A           74 YTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYL  153 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4567888999999997     999999885443     349999976776666543 35699999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECC-------------------------CCCeEEecccCccccCCC-CccccccccCCccccc
Q 015733           85 TSKERALYHDLNAYRIVFDD-------------------------DVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLR  138 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~-------------------------~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~  138 (401)
                      |++ ||+||||||+|||++.                         ++.+||+|||+++..... ....||+.|+|||++.
T Consensus       154 H~~-~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~  232 (360)
T 3llt_A          154 RKM-SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVIL  232 (360)
T ss_dssp             HHT-TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHT
T ss_pred             HHC-CeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHc
Confidence            999 9999999999999975                         789999999999875443 4567899999999999


Q ss_pred             cCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcc-------------------ccccc-cccccCCCC-------
Q 015733          139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN-------------------IQTLT-DSCLEGQFS-------  191 (401)
Q Consensus       139 ~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~-------  191 (401)
                      +..++.++|||||||++|+|+||+.||............                   ..... .......+|       
T Consensus       233 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  312 (360)
T 3llt_A          233 NLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSIN  312 (360)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHH
T ss_pred             CCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchh
Confidence            999999999999999999999999998653211100000                   00000 000000001       


Q ss_pred             -------------hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          192 -------------SDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       192 -------------~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                                   ...+..+.+||.+||+.||.+|||+.+++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~h  356 (360)
T 3llt_A          313 SIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKH  356 (360)
T ss_dssp             HHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             hhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence                         0112678899999999999999999999753

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=7.1e-35  Score=284.03  Aligned_cols=205  Identities=11%  Similarity=0.148  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+.+.+|+.++.+++||||++++..+.          .+||||+++++...+. ....+++..+..++.||+.||.|||
T Consensus        68 ~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~-~~~~l~~~~~~~i~~qil~aL~~LH  146 (432)
T 3n9x_A           68 DCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFK-TPIFLTEEHIKTILYNLLLGENFIH  146 (432)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCSEEHHHHHH-SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCCcCHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3478999999999999999999884331          3499999987777665 4567999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------------------------CccccccccCCcccc-c
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------------------------RSYSTNLAFTPPEYL-R  138 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------------------------~~~~~~~~y~aPE~~-~  138 (401)
                      +. ||+||||||+|||++.++.+||+|||+++.....                          ....||+.|+|||++ .
T Consensus       147 ~~-givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~  225 (432)
T 3n9x_A          147 ES-GIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILL  225 (432)
T ss_dssp             HT-TEECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTT
T ss_pred             HC-CCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhc
Confidence            99 9999999999999999999999999999875432                          345689999999986 4


Q ss_pred             cCccCCCCcchhhHHHHHHHHhCCCCCCchhhH---Hhh---------------------hccc----------------
Q 015733          139 TGRVTPESVMYSFGTLLLDLLSGKHIPPSHALD---LIR---------------------DRNI----------------  178 (401)
Q Consensus       139 ~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~---~~~---------------------~~~~----------------  178 (401)
                      ...++.++|||||||++|||++|..|+......   .+.                     ...+                
T Consensus       226 ~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~  305 (432)
T 3n9x_A          226 QENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLK  305 (432)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHH
Confidence            566999999999999999999864443211000   000                     0000                


Q ss_pred             -------ccccccc-ccCCC-----ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          179 -------QTLTDSC-LEGQF-----SSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       179 -------~~~~~~~-~~~~~-----~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                             ...+... .....     .+..+.++.+||.+||+.||.+|||+.+++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  362 (432)
T 3n9x_A          306 NINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDH  362 (432)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTC
T ss_pred             hccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                   0000000 00000     13467889999999999999999999999974

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.1e-34  Score=296.88  Aligned_cols=200  Identities=17%  Similarity=0.190  Sum_probs=165.0

Q ss_pred             hhhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.+..|..++..+ +||+|+.+...++     .+||||++|+.+..+....+.+++..++.++.||+.||.|||++ 
T Consensus       383 ~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-  461 (674)
T 3pfq_A          383 DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK-  461 (674)
T ss_dssp             TTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            3456788999999987 6899998886555     35999999765555544556799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |||||||||+||||+.++.+||+|||+++....    ....+||+.|+|||++.+..++.++|||||||++|||++|..|
T Consensus       462 gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~P  541 (674)
T 3pfq_A          462 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAP  541 (674)
T ss_dssp             SEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCS
T ss_pred             CeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCC
Confidence            999999999999999999999999999986322    2356799999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP-----RSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~-----~~vl~  221 (401)
                      |.+.........    +...  ...+|..++.++.+||.+||+.||.+||++     .+|++
T Consensus       542 f~~~~~~~~~~~----i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          542 FEGEDEDELFQS----IMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             SCCSSHHHHHHH----HHSS--CCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             CCCCCHHHHHHH----HHhC--CCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence            876543322222    1111  224677788999999999999999999997     66665

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.2e-35  Score=278.73  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+.+|+.++.++ +||||+.++..++     .+||||++|+.+..+....+.+++..+..++.||+.||.|||++ ||+
T Consensus        60 ~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~-giv  138 (342)
T 2qr7_A           60 RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ-GVV  138 (342)
T ss_dssp             CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-CcE
Confidence            4567899999888 7999999985544     34999998754433333456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCC----CCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           92 YHDLNAYRIVFDDD----VNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~----~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||||||+|||+.++    +.+||+|||+++.....    ...+||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       139 HrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  218 (342)
T 2qr7_A          139 HRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYT  218 (342)
T ss_dssp             CSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             eccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCC
Confidence            99999999998543    35999999999875433    24568999999999998889999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccc--cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDS--CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ||...... ........+...  ......+..++.++.+||.+||+.||.+|||+.+++++-+
T Consensus       219 Pf~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~  280 (342)
T 2qr7_A          219 PFANGPDD-TPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPW  280 (342)
T ss_dssp             SSCSSTTS-CHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHH
T ss_pred             CCCCCCcC-CHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCe
Confidence            98642110 000001111111  1122234567889999999999999999999999987543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.6e-36  Score=289.17  Aligned_cols=194  Identities=13%  Similarity=0.067  Sum_probs=151.6

Q ss_pred             hhHHHHHHH---HHHhhhCCCeEEEeeee-----------------------------ccccEeeecCCcccccccCC--
Q 015733           16 QSTYFIVSL---VLIASMSSFILLAVIFM-----------------------------FQIPSYEFHCLTFSNNFSGE--   61 (401)
Q Consensus        16 ~~~~f~~E~---~~l~~~~h~niv~~~~~-----------------------------~~~~v~Ey~~~~l~~~~~~~--   61 (401)
                      ..+.|.+|+   ..+++++||||++++..                             ...+||||++|++...+...  
T Consensus       116 ~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~  195 (377)
T 3byv_A          116 AIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLS  195 (377)
T ss_dssp             HHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccc
Confidence            347889999   56666789999876511                             13459999987766655431  


Q ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccc
Q 015733           62 ----TQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEY  136 (401)
Q Consensus        62 ----~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~  136 (401)
                          ...+++..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++..... ....| +.|+|||+
T Consensus       196 ~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~  273 (377)
T 3byv_A          196 HSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPEL  273 (377)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccChhh
Confidence                23455688999999999999999999 9999999999999999999999999999875543 23456 99999999


Q ss_pred             cccC-----------ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHh
Q 015733          137 LRTG-----------RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRC  205 (401)
Q Consensus       137 ~~~~-----------~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  205 (401)
                      +.+.           .++.++|||||||++|||+||..||......    .....+.      ..+..++.++.+||.+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~----~~~~~~~------~~~~~~~~~~~~li~~~  343 (377)
T 3byv_A          274 EARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAAL----GGSEWIF------RSCKNIPQPVRALLEGF  343 (377)
T ss_dssp             HHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC----------CCSGGGG------SSCCCCCHHHHHHHHHH
T ss_pred             hcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccc----cchhhhh------hhccCCCHHHHHHHHHH
Confidence            9887           7999999999999999999999998653211    1111111      11245577899999999


Q ss_pred             cccCCCCCCCHHHHHH
Q 015733          206 LQYEPRERPNPRSLVT  221 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~  221 (401)
                      |+.||.+|||+.++++
T Consensus       344 L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          344 LRYPKEDRLLPLQAME  359 (377)
T ss_dssp             TCSSGGGCCCHHHHHT
T ss_pred             cCCCchhCCCHHHHhh
Confidence            9999999999999986

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-34  Score=272.45  Aligned_cols=212  Identities=13%  Similarity=0.150  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHhhh--CCCeEEEeeeecc---------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM--SSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~--~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+..|..++...  +||||++++....         .+||||++| ++...+.  ...+++..++.++.|++.||.||
T Consensus        73 ~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~l  150 (337)
T 3mdy_A           73 EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK--STTLDAKSMLKLAYSSVSGLCHL  150 (337)
T ss_dssp             HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHH
Confidence            34556666666554  9999998883221         359999987 4555443  34699999999999999999999


Q ss_pred             hcCC-------CceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccCccCCC----
Q 015733           85 TSKE-------RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTGRVTPE----  145 (401)
Q Consensus        85 H~~~-------~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~----  145 (401)
                      |++.       ||+||||||+|||++.++.+||+|||+++.....        ....||+.|+|||++.+...+..    
T Consensus       151 H~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  230 (337)
T 3mdy_A          151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSY  230 (337)
T ss_dssp             HSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHH
T ss_pred             HHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCc
Confidence            9763       8999999999999999999999999999765432        13468999999999987766665    


Q ss_pred             --CcchhhHHHHHHHHhC----------CCCCCchhhHHhhhcccc-ccccccccCCCC-----hHHHHHHHHHHHHhcc
Q 015733          146 --SVMYSFGTLLLDLLSG----------KHIPPSHALDLIRDRNIQ-TLTDSCLEGQFS-----SDEGTELVRLASRCLQ  207 (401)
Q Consensus       146 --~Dv~slG~~l~el~tg----------~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~li~~cl~  207 (401)
                        +|||||||++|||+||          ..||.............. .+........++     ..++.++.+||.+||+
T Consensus       231 ~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  310 (337)
T 3mdy_A          231 IMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWA  310 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSC
T ss_pred             cccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhh
Confidence              9999999999999999          555433210000000000 011111222233     3688899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHccccCC
Q 015733          208 YEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      .||.+|||+.+|++.|+.+.+..
T Consensus       311 ~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          311 HNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             hChhhCCCHHHHHHHHHHHHhhc
Confidence            99999999999999999987654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4.2e-35  Score=299.02  Aligned_cols=205  Identities=19%  Similarity=0.261  Sum_probs=166.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||++++..+.    .+||||+++ ++...+......+++..++.++.|++.||.|||++ ||+
T Consensus       435 ~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-giv  513 (656)
T 2j0j_A          435 REKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK-RFV  513 (656)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-Ccc
Confidence            478999999999999999999885433    349999995 45555544556799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                      ||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       514 HrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf  593 (656)
T 2j0j_A          514 HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF  593 (656)
T ss_dssp             CSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999998765432     2345678999999998899999999999999999997 88887


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      .+........    . +........+..++..+.+||.+||+.||.+|||+.++++.|..+.
T Consensus       594 ~~~~~~~~~~----~-i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il  650 (656)
T 2j0j_A          594 QGVKNNDVIG----R-IENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL  650 (656)
T ss_dssp             TTCCHHHHHH----H-HHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHH----H-HHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            6543221111    1 1111223456778889999999999999999999999999998764

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=7.8e-35  Score=270.34  Aligned_cols=203  Identities=14%  Similarity=0.197  Sum_probs=164.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+.. ..++++..+..++.|++.||.|||+. |+
T Consensus        63 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  140 (303)
T 3a7i_A           63 EIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSE-KK  140 (303)
T ss_dssp             THHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3578999999999999999999884433     34999999754444443 35799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.+||+|||++......    ....|++.|+|||.+.+..++.++||||||+++|+|++|..||.
T Consensus       141 ~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  220 (303)
T 3a7i_A          141 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHS  220 (303)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCC
Confidence            99999999999999999999999999775443    24568899999999998899999999999999999999999876


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      .........     .+........+..++..+.+||.+||+.||.+|||+.++++...-
T Consensus       221 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~  274 (303)
T 3a7i_A          221 ELHPMKVLF-----LIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFI  274 (303)
T ss_dssp             TSCHHHHHH-----HHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHH
T ss_pred             CcCHHHHHH-----HhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhh
Confidence            532211110     111111223455677889999999999999999999999886543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.9e-34  Score=270.85  Aligned_cols=204  Identities=13%  Similarity=0.117  Sum_probs=160.0

Q ss_pred             hHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCc-ccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...+.+|+.++..+. ||||+.++..+.     .+||||++|+ +...+.. ....+++..++.++.||+.||.|||++ 
T Consensus        72 ~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~-  150 (327)
T 3lm5_A           72 RAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN-  150 (327)
T ss_dssp             HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            578999999999995 599999885444     3499999975 4444433 357799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           89 RALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ||+||||||+|||++.   ++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|++|.
T Consensus       151 givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~  230 (327)
T 3lm5_A          151 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHT  230 (327)
T ss_dssp             TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999998   789999999999876543   3356899999999999889999999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      .||...............  ...........++..+.+||.+||+.||.+|||+.+++++-
T Consensus       231 ~pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~  289 (327)
T 3lm5_A          231 SPFVGEDNQETYLNISQV--NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHS  289 (327)
T ss_dssp             CSSCCSSHHHHHHHHHHT--CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCG
T ss_pred             CCCCCCCchHHHHHHHhc--ccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCH
Confidence            998664332211111111  11112233456778899999999999999999999998753

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.2e-34  Score=286.73  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=159.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.++++++||||++++..+.     .+||||+.|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        64 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~i  142 (486)
T 3mwu_A           64 DTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH-NI  142 (486)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            3568999999999999999999985444     34999999754433333446799999999999999999999999 99


Q ss_pred             eeccCCCCCEEEC---CCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFD---DDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~---~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++   .++.+||+|||+++.....   ....||+.|+|||++.+ .++.++|||||||++|+|++|..|
T Consensus       143 vH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~p  221 (486)
T 3mwu_A          143 VHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPP  221 (486)
T ss_dssp             CCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             EeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCC
Confidence            9999999999995   4567999999999875443   34568999999999875 689999999999999999999999


Q ss_pred             CCchhhHHhhhcccccccccccc--CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLE--GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |.+.........    +......  .+....++.++.+||.+||+.||.+|||+.+++++-
T Consensus       222 f~~~~~~~~~~~----i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp  278 (486)
T 3mwu_A          222 FYGKNEYDILKR----VETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHP  278 (486)
T ss_dssp             SCCSSHHHHHHH----HHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCH
T ss_pred             CCCCCHHHHHHH----HHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCH
Confidence            876432221111    1111111  111245678899999999999999999999999853

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.7e-35  Score=268.99  Aligned_cols=208  Identities=16%  Similarity=0.175  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++++.+..+......+++..+..++.||+.||.|||++ |++
T Consensus        52 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~  130 (283)
T 3bhy_A           52 REEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK-RIA  130 (283)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Ccc
Confidence            578999999999999999999884433     34999998654444444456799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCC----CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           92 YHDLNAYRIVFDDDV----NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||+||+++.++    .+||+|||++......   ....+++.|+|||++.+..++.++||||||+++|+|++|..|
T Consensus       131 H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  210 (283)
T 3bhy_A          131 HFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  210 (283)
T ss_dssp             CSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCC
Confidence            999999999999877    7999999999875443   234688999999999988999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT--ALVTLQ  227 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~--~l~~~~  227 (401)
                      |...............  ........+...+..+.+++.+||+.||.+|||+.++++  .+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          211 FLGETKQETLTNISAV--NYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             TCCSSHHHHHHHHHTT--CCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             CCCcchHHHHHHhHhc--ccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence            8664322111110000  000011112345678999999999999999999999997  344443

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1e-34  Score=269.69  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=160.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++.+++||||+.++..+.     ..||||++|+.+..+......+++..+..++.|++.||.|||++ |++
T Consensus        50 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~  128 (304)
T 2jam_A           50 DSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN-GIV  128 (304)
T ss_dssp             --HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            456889999999999999999884433     34999998654433333446799999999999999999999999 999


Q ss_pred             eccCCCCCEEE---CCCCCeEEecccCccccCCCC--ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDGR--SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+||++   +.++.+||+|||++.......  ...||+.|+|||++.+..++.++||||||+++|+|++|..||.
T Consensus       129 H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  208 (304)
T 2jam_A          129 HRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFY  208 (304)
T ss_dssp             CCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            99999999999   788999999999987654432  3458999999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ................  ......+..++..+.++|.+||+.||.+|||+.+++.+
T Consensus       209 ~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          209 EETESKLFEKIKEGYY--EFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             TSCHHHHHHHHHHCCC--CCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHcCCC--CCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            5432221111111100  11123345678899999999999999999999999874

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=276.08  Aligned_cols=209  Identities=17%  Similarity=0.153  Sum_probs=158.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+.|.+|+.++.+++||||+.++....     ..||||++|+ +...+......+++..++.++.||+.||.|||++ |
T Consensus        72 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~  150 (319)
T 2y4i_B           72 QLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK-G  150 (319)
T ss_dssp             CCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            3467889999999999999999884433     3499999865 5555544456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC---------CCccccccccCCcccccc---------CccCCCCcchhh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD---------GRSYSTNLAFTPPEYLRT---------GRVTPESVMYSF  151 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~---------~~~~~~~~~y~aPE~~~~---------~~~~~~~Dv~sl  151 (401)
                      ++||||||+||+++ ++.+||+|||+++....         .....|++.|+|||++.+         ..++.++|||||
T Consensus       151 i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~sl  229 (319)
T 2y4i_B          151 ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFAL  229 (319)
T ss_dssp             CCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHH
T ss_pred             ccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHH
Confidence            99999999999998 67999999999775421         122357899999999874         347889999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      |+++|+|++|..||...............    ......+..++.++.+++.+||+.||.+|||+.++++.|+.+.+..
T Consensus       230 G~il~el~~g~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          230 GTIWYELHAREWPFKTQPAEAIIWQMGTG----MKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             HHHHHHHHHSSCSSSSCCHHHHHHHHHTT----CCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHhccC----CCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence            99999999999998654322211111111    1111112345677999999999999999999999999999987653

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.2e-34  Score=275.68  Aligned_cols=206  Identities=16%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec------------cccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF------------QIPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEA   80 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~------------~~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~   80 (401)
                      ....+..++..+..++||||++++..+            ..+||||+++++...+.   .....+++..+..++.|++.|
T Consensus        62 ~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  141 (360)
T 3e3p_A           62 FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRS  141 (360)
T ss_dssp             CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Confidence            346788899999999999999987443            23599999988655433   356789999999999999999


Q ss_pred             HHHHh--cCCCceeccCCCCCEEECC-CCCeEEecccCccccCCC---CccccccccCCccccccC-ccCCCCcchhhHH
Q 015733           81 LEYCT--SKERALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGT  153 (401)
Q Consensus        81 l~~lH--~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~  153 (401)
                      |.|||  +. ||+||||||+|||++. ++.+||+|||+++.....   ....||+.|+|||++.+. .++.++|||||||
T Consensus       142 l~~lH~~~~-~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~  220 (360)
T 3e3p_A          142 IGCLHLPSV-NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGC  220 (360)
T ss_dssp             HHHHTSTTT-CCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred             HHHHhCCCC-CeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHH
Confidence            99999  88 9999999999999996 899999999999875543   245679999999998764 4899999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhcccccc--------------------c------cccccCCCChHHHHHHHHHHHHhcc
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTL--------------------T------DSCLEGQFSSDEGTELVRLASRCLQ  207 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~--------------------~------~~~~~~~~~~~~~~~l~~li~~cl~  207 (401)
                      ++|+|+||..||.+.............+                    .      -.......+...+.++.+||.+||+
T Consensus       221 il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  300 (360)
T 3e3p_A          221 IFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQ  300 (360)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhc
Confidence            9999999999987643221111100000                    0      0000112233467899999999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 015733          208 YEPRERPNPRSLVTA  222 (401)
Q Consensus       208 ~~p~~Rps~~~vl~~  222 (401)
                      .||.+|||+.+++++
T Consensus       301 ~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          301 YLPEERMKPYEALCH  315 (360)
T ss_dssp             SSGGGSCCHHHHTTS
T ss_pred             cCccccCCHHHHhcC
Confidence            999999999999874

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=9.8e-35  Score=267.43  Aligned_cols=201  Identities=15%  Similarity=0.209  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC---CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      .+.|.+|+.++.+++||||++++..+.     .+||||++|+ +...+..   ....+++..++.++.|++.||.|||++
T Consensus        64 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~  143 (285)
T 3is5_A           64 MEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ  143 (285)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999885444     3499999964 4444432   346799999999999999999999999


Q ss_pred             CCceeccCCCCCEEE---CCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           88 ERALYHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        88 ~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                       ||+||||||+||++   +.++.+||+|||++......   ....+|+.|+|||.+. +.++.++||||||+++|+|++|
T Consensus       144 -~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g  221 (285)
T 3is5_A          144 -HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTG  221 (285)
T ss_dssp             -TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHS
T ss_pred             -CEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhC
Confidence             99999999999999   45678999999999865433   3456899999999986 5688999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||...............  ..... ......+.++.+||.+||+.||.+|||+.++++.
T Consensus       222 ~~pf~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          222 CLPFTGTSLEEVQQKATYK--EPNYA-VECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             SCSSCCSSHHHHHHHHHHC--CCCCC-C--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             CCCCCCCCHHHHHhhhccC--Ccccc-cccCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            9998765332221111111  00000 1112356789999999999999999999999863

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=4.2e-35  Score=270.18  Aligned_cols=202  Identities=14%  Similarity=0.180  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      +.+..+...++.++||||+.++..+.     .+||||++|++...+.   .....+++..++.++.|++.||.|||++.|
T Consensus        51 ~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~  130 (290)
T 3fme_A           51 RLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS  130 (290)
T ss_dssp             HHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            44555566688899999999884433     3499999987655543   256789999999999999999999999558


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccc----ccCccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYL----RTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~----~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      ++||||||+||+++.++.+||+|||+++.....   ....||+.|+|||.+    .+..++.++|||||||++|+|+||.
T Consensus       131 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~  210 (290)
T 3fme_A          131 VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILR  210 (290)
T ss_dssp             CCCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTS
T ss_pred             eecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999875443   234689999999996    4567889999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .||........   ..............+..++.++.++|.+||+.||.+|||+.+++++
T Consensus       211 ~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          211 FPYDSWGTPFQ---QLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             CSSCCCSCHHH---HHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCccccCchHH---HHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            99865322111   1111111111222234567889999999999999999999999873

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.1e-34  Score=277.18  Aligned_cols=203  Identities=13%  Similarity=0.200  Sum_probs=157.0

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+.+|+.+++.++||||++++..+.           .+||||+.+++...+.   ..+++..+..++.||+.||.||
T Consensus        84 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~L  160 (371)
T 4exu_A           84 FAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG---MEFSEEKIQYLVYQMLKGLKYI  160 (371)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCCEEHHHHTT---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEccccccHHHHhh---cCCCHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999998884433           4599999987766653   3499999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |++ ||+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..++.++|||||||++|+|+||.
T Consensus       161 H~~-~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~  239 (371)
T 4exu_A          161 HSA-GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK  239 (371)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             HHC-CCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999999875543 34578999999999987 67899999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-------------------cccc---cccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRNIQ-------------------TLTD---SCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-------------------~~~~---~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||.+............                   ....   ....   ...+..++..+.+||.+||+.||.+|||+.
T Consensus       240 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  319 (371)
T 4exu_A          240 TLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAA  319 (371)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHH
Confidence            99875422111100000                   0000   0000   011234578899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++++
T Consensus       320 ell~h  324 (371)
T 4exu_A          320 QALTH  324 (371)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=4.5e-35  Score=281.99  Aligned_cols=207  Identities=12%  Similarity=0.146  Sum_probs=162.5

Q ss_pred             hhHHHHHHHHHHhhhC--------CCeEEEeeeecc---------ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS--------SFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHI   77 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~--------h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi   77 (401)
                      ..+.+.+|+.++.+++        ||||+.++..+.         .+||||+.++++..+... ...+++..++.++.||
T Consensus        76 ~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi  155 (397)
T 1wak_A           76 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQV  155 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            4578899999999996        778888884432         359999988877766543 4679999999999999


Q ss_pred             HHHHHHHhcCCCceeccCCCCCEEECCCC-------------------------------------------------Ce
Q 015733           78 AEALEYCTSKERALYHDLNAYRIVFDDDV-------------------------------------------------NP  108 (401)
Q Consensus        78 ~~~l~~lH~~~~ivH~dlk~~Nill~~~~-------------------------------------------------~~  108 (401)
                      +.||.|||+++||+||||||+|||++.++                                                 .+
T Consensus       156 ~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
T 1wak_A          156 LQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKV  235 (397)
T ss_dssp             HHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCE
T ss_pred             HHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccce
Confidence            99999999975899999999999999775                                                 79


Q ss_pred             EEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHH-------hh------
Q 015733          109 RLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL-------IR------  174 (401)
Q Consensus       109 kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~-------~~------  174 (401)
                      ||+|||+++..... ....||+.|+|||++.+..++.++|||||||++|||+||..||.......       ..      
T Consensus       236 kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~  315 (397)
T 1wak_A          236 KIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELL  315 (397)
T ss_dssp             EECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred             EeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhc
Confidence            99999999875543 34578999999999999889999999999999999999999986421100       00      


Q ss_pred             ---------hccc-cccccc-------------------cccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          175 ---------DRNI-QTLTDS-------------------CLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       175 ---------~~~~-~~~~~~-------------------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                               .... ......                   ......+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       316 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          316 GKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             CSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             CCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence                     0000 000000                   00113456778899999999999999999999999864

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=3.5e-35  Score=288.79  Aligned_cols=209  Identities=12%  Similarity=0.117  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEe---eeec---cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAV---IFMF---QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~---~~~~---~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+|..|+.++..++|++.+..   +...   ..+||||+.+++..++......+++..++.++.||+.||.|||++ ||
T Consensus        46 ~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-gI  124 (483)
T 3sv0_A           46 HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK-SF  124 (483)
T ss_dssp             SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-CE
Confidence            4578999999999998652222   2111   145999997777777765567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEE---CCCCCeEEecccCccccCCCC-----------ccccccccCCccccccCccCCCCcchhhHHHHH
Q 015733           91 LYHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDGR-----------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLL  156 (401)
Q Consensus        91 vH~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  156 (401)
                      |||||||+||||   +.++.+||+|||+++......           ...||+.|+|||++.+..++.++|||||||++|
T Consensus       125 vHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~  204 (483)
T 3sv0_A          125 LHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLM  204 (483)
T ss_dssp             ECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             eecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHH
Confidence            999999999999   688999999999998754322           456899999999999999999999999999999


Q ss_pred             HHHhCCCCCCchhhHHhhhcccccccccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          157 DLLSGKHIPPSHALDLIRDRNIQTLTDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       157 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      ||++|..||......... .....+......   ..++..++.++.+||..||+.+|.+||++.+|++.|+.+.
T Consensus       205 elltG~~Pf~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~  277 (483)
T 3sv0_A          205 YFLRGSLPWQGLKAGTKK-QKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLF  277 (483)
T ss_dssp             HHHHSSCTTSSCCCSSHH-HHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCccccchhHH-HHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence            999999998653210000 000011000000   0112345678999999999999999999999999887763

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.1e-34  Score=265.59  Aligned_cols=199  Identities=16%  Similarity=0.216  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.+++.++||||+.++..+.     .+||||++++.+..+......+++..+..++.||+.||.|||++ |++
T Consensus        55 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~  133 (276)
T 2h6d_A           55 VGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH-MVV  133 (276)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH-CSS
T ss_pred             HHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            457899999999999999999884443     34999998654433333446799999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      ||||||+||+++.++.+||+|||++......   ....+++.|+|||.+.+..+ +.++||||||+++|+|++|..||..
T Consensus       134 H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  213 (276)
T 2h6d_A          134 HRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDD  213 (276)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999998876543   23467899999999987665 6899999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .........    +...  ....|..++..+.++|.+||+.||.+|||+.+++++
T Consensus       214 ~~~~~~~~~----~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          214 EHVPTLFKK----IRGG--VFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             SSHHHHHHH----HHHC--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             CcHHHHHHH----hhcC--cccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            432211111    1110  112455667889999999999999999999999984

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=7.9e-35  Score=287.92  Aligned_cols=202  Identities=15%  Similarity=0.130  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++||||++++..+.     .+||||+.|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        69 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i  147 (484)
T 3nyv_A           69 DKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN-KI  147 (484)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4578999999999999999999985444     34999998754443333556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEE---CCCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVF---DDDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill---~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||+   +.++.+||+|||+++......   ...||+.|+|||++.+ .++.++|||||||++|+|++|..|
T Consensus       148 vH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~p  226 (484)
T 3nyv_A          148 VHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPP  226 (484)
T ss_dssp             CCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             eeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCC
Confidence            999999999999   567899999999998765443   3468999999999875 789999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccC--CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEG--QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |.+.........    +.......  +....++..+.+||.+||+.||.+|||+.+++++-
T Consensus       227 f~~~~~~~~~~~----i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~  283 (484)
T 3nyv_A          227 FNGANEYDILKK----VEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHE  283 (484)
T ss_dssp             SCCSSHHHHHHH----HHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred             CCCCCHHHHHHH----HHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhCh
Confidence            876432221111    11111111  11245678899999999999999999999999743

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=5.7e-35  Score=278.48  Aligned_cols=204  Identities=14%  Similarity=0.199  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...|.+|+.++.+++||||++++..+.          ..||||++|++...+..  ..+++..+..++.||+.||.|||+
T Consensus        69 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~~L~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH~  146 (364)
T 3qyz_A           69 CQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKT--QHLSNDHICYFLYQILRGLKYIHS  146 (364)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCSEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccCcCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            477999999999999999999874332          34999999877776643  469999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCcchhhHHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el  158 (401)
                      + ||+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++.+ ..++.++|||||||++|+|
T Consensus       147 ~-~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el  225 (364)
T 3qyz_A          147 A-NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM  225 (364)
T ss_dssp             T-TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHH
T ss_pred             C-CeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHH
Confidence            9 9999999999999999999999999999875432       23468999999998765 4589999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccccc-------------------ccc-ccC-----CCChHHHHHHHHHHHHhcccCCCCC
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLT-------------------DSC-LEG-----QFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~-------------------~~~-~~~-----~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      +||..||.+.............+.                   ... ...     ......+.++.+||.+||+.||.+|
T Consensus       226 l~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  305 (364)
T 3qyz_A          226 LSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKR  305 (364)
T ss_dssp             HHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             HHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhC
Confidence            999999865421111000000000                   000 000     1123456789999999999999999


Q ss_pred             CCHHHHHHHH
Q 015733          214 PNPRSLVTAL  223 (401)
Q Consensus       214 ps~~~vl~~l  223 (401)
                      ||+.+++++-
T Consensus       306 ~t~~e~l~hp  315 (364)
T 3qyz_A          306 IEVEQALAHP  315 (364)
T ss_dssp             CCHHHHHTSG
T ss_pred             CCHHHHhcCc
Confidence            9999998743

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=8.4e-35  Score=283.11  Aligned_cols=207  Identities=15%  Similarity=0.233  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHhhh------CCCeEEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM------SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~------~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+.+|+.++..+      +|+||+.++..+.     .+||||+++++...+... ...+++..+..++.||+.||.||
T Consensus       137 ~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~L  216 (429)
T 3kvw_A          137 HRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDAL  216 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46788888888887      5669988884433     359999998877766543 35699999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCC--eEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVN--PRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~--~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ ||+||||||+|||++.++.  +||+|||+++..... ....||+.|+|||++.+..++.++|||||||++|||+||
T Consensus       217 H~~-~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG  295 (429)
T 3kvw_A          217 HKN-RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG  295 (429)
T ss_dssp             HHH-TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHS
T ss_pred             HHC-CeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhC
Confidence            999 9999999999999999987  999999999875544 356789999999999998999999999999999999999


Q ss_pred             CCCCCchhhHHhhhcccc-----------------ccccc--------------------------------c----ccC
Q 015733          162 KHIPPSHALDLIRDRNIQ-----------------TLTDS--------------------------------C----LEG  188 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~-----------------~~~~~--------------------------------~----~~~  188 (401)
                      ..||.+............                 ..++.                                .    +..
T Consensus       296 ~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (429)
T 3kvw_A          296 YPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGN  375 (429)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHh
Confidence            999865422110000000                 00000                                0    000


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .++...++.+.+||.+||+.||.+|||+.+++++-+
T Consensus       376 ~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw  411 (429)
T 3kvw_A          376 ALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPW  411 (429)
T ss_dssp             HTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTT
T ss_pred             hccccchHHHHHHHHHHCCCChhhCCCHHHHhCChh
Confidence            011123677999999999999999999999987533

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1e-34  Score=274.00  Aligned_cols=211  Identities=10%  Similarity=0.120  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHhh--hCCCeEEEeeeecc---------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIAS--MSSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~--~~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+.+|+.++..  ++||||++++....         .+||||+++ ++...+.  ...+++..++.++.|++.||.||
T Consensus        78 ~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~l  155 (342)
T 1b6c_B           78 ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHL  155 (342)
T ss_dssp             HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHh--ccCccHHHHHHHHHHHHHHHHHH
Confidence            4678889988887  79999998883322         359999997 4555443  34699999999999999999999


Q ss_pred             h--------cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC------cc
Q 015733           85 T--------SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG------RV  142 (401)
Q Consensus        85 H--------~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~------~~  142 (401)
                      |        +. ||+||||||+|||++.++.+||+|||++......        ....||+.|+|||++.+.      .+
T Consensus       156 H~~~~~~~~~~-~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  234 (342)
T 1b6c_B          156 HMEIVGTQGKP-AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFES  234 (342)
T ss_dssp             HCCBCSTTCBC-EEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHH
T ss_pred             HHHHhhhcccC-CeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhccccccccccc
Confidence            9        78 9999999999999999999999999998765432        234689999999999865      34


Q ss_pred             CCCCcchhhHHHHHHHHhC----------CCCCCchhhHHhh-hccccccccccccCCCC-----hHHHHHHHHHHHHhc
Q 015733          143 TPESVMYSFGTLLLDLLSG----------KHIPPSHALDLIR-DRNIQTLTDSCLEGQFS-----SDEGTELVRLASRCL  206 (401)
Q Consensus       143 ~~~~Dv~slG~~l~el~tg----------~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~l~~li~~cl  206 (401)
                      +.++|||||||++|||+||          ..||......... ......+........++     ..++..+.+||.+||
T Consensus       235 ~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl  314 (342)
T 1b6c_B          235 FKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECW  314 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHC
T ss_pred             CCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHh
Confidence            4789999999999999999          5666442110000 00011111122222333     357788999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHccccCC
Q 015733          207 QYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       207 ~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      +.||.+|||+.+|++.|+.+.+..
T Consensus       315 ~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          315 YANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             ccChhhCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999887653

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-35  Score=280.35  Aligned_cols=206  Identities=16%  Similarity=0.177  Sum_probs=160.0

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.+.+|+.++.++ +||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ |
T Consensus       101 ~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~  179 (355)
T 1vzo_A          101 TTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL-G  179 (355)
T ss_dssp             SGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            346788899999999 6999998874433     35999999754444443446799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCcccccc--CccCCCCcchhhHHHHHHHHhCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+  ..++.++|||||||++|||+||.
T Consensus       180 ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~  259 (355)
T 1vzo_A          180 IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA  259 (355)
T ss_dssp             CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSS
T ss_pred             cccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCC
Confidence            999999999999999999999999998864322     23568999999999986  34789999999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTALV  224 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~l~  224 (401)
                      .||...............+..  ....++..++..+.+||.+||+.||.+||     |+.+++++..
T Consensus       260 ~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~  324 (355)
T 1vzo_A          260 SPFTVDGEKNSQAEISRRILK--SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF  324 (355)
T ss_dssp             CTTSCTTSCCCHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGG
T ss_pred             CCCccCCccchHHHHHHHHhc--cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcc
Confidence            998643211000000111111  12345677788999999999999999999     8999987654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.6e-34  Score=286.42  Aligned_cols=203  Identities=12%  Similarity=0.121  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ....+.+|+.+++.++||||++++..+.     .+|||||+|+.+........++++..+..++.||+.||.|||++ ||
T Consensus        79 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i  157 (494)
T 3lij_A           79 SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH-NI  157 (494)
T ss_dssp             TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            3578999999999999999999985444     34999999754433333446799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.   ++.+||+|||++......   ....||+.|+|||++. +.++.++|||||||++|+|++|..|
T Consensus       158 vH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~p  236 (494)
T 3lij_A          158 VHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPP  236 (494)
T ss_dssp             ECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             eeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCC
Confidence            99999999999976   455999999999876543   3456899999999986 5789999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+...............  .........++..+.+||.+||+.||.+|||+.+++++
T Consensus       237 f~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          237 FGGQTDQEILRKVEKGKY--TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             SCCSSHHHHHHHHHHTCC--CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhCCC--CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            876533222111111100  00111113467889999999999999999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=4.8e-35  Score=278.50  Aligned_cols=207  Identities=15%  Similarity=0.186  Sum_probs=159.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     .+||||++|+.+..+......+++..+..++.|++.||.|||++.||
T Consensus        74 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i  153 (360)
T 3eqc_A           74 IRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKI  153 (360)
T ss_dssp             HHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            4578999999999999999999884433     34999999754444444456799999999999999999999984389


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccC--CCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSR--DGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      +||||||+|||++.++.+||+|||++....  ......||+.|+|||++.+..++.++|||||||++|+|+||..||...
T Consensus       154 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          154 MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             CCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             EcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999999987532  223457899999999999989999999999999999999999998653


Q ss_pred             hhHHhhhcc--------------------------------------ccccccccccCCCChHHHHHHHHHHHHhcccCC
Q 015733          169 ALDLIRDRN--------------------------------------IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEP  210 (401)
Q Consensus       169 ~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p  210 (401)
                      .........                                      ...+.........+..++.++.+||.+||+.||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  313 (360)
T 3eqc_A          234 DAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNP  313 (360)
T ss_dssp             CHHHHHHHHC------------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSST
T ss_pred             CHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcCh
Confidence            221110000                                      000000000111123357789999999999999


Q ss_pred             CCCCCHHHHHHH
Q 015733          211 RERPNPRSLVTA  222 (401)
Q Consensus       211 ~~Rps~~~vl~~  222 (401)
                      .+|||+.+++++
T Consensus       314 ~~Rpt~~ell~h  325 (360)
T 3eqc_A          314 AERADLKQLMVH  325 (360)
T ss_dssp             TTSCCHHHHHTS
T ss_pred             hhCCCHHHHhhC
Confidence            999999999974

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=271.36  Aligned_cols=203  Identities=13%  Similarity=0.185  Sum_probs=157.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..+.|.+|+.++++++||||++++..+.           .+||||+++++...+.   ..+++..+..++.||+.||.||
T Consensus        66 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~L  142 (353)
T 3coi_A           66 FAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG---LKFSEEKIQYLVYQMLKGLKYI  142 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCSEEGGGTTT---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEeccccCCHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999999998874332           4599999987666553   3599999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                      |++ |++||||||+||+++.++.+||+|||+++..... ....+|+.|+|||++.+ ..++.++|||||||++|+|++|.
T Consensus       143 H~~-~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~  221 (353)
T 3coi_A          143 HSA-GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK  221 (353)
T ss_dssp             HHT-TCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             HHC-CcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCC
Confidence            999 9999999999999999999999999999875443 34568999999999887 67899999999999999999999


Q ss_pred             CCCCchhhHHhhhcccc-----------c--------c---ccccc---cCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          163 HIPPSHALDLIRDRNIQ-----------T--------L---TDSCL---EGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~-----------~--------~---~~~~~---~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      .||.+............           .        .   .....   ........+..+.+||.+||+.||.+|||+.
T Consensus       222 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~  301 (353)
T 3coi_A          222 TLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAA  301 (353)
T ss_dssp             CSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHH
Confidence            99865321110000000           0        0   00000   0123346788999999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++.+
T Consensus       302 e~l~h  306 (353)
T 3coi_A          302 QALTH  306 (353)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.4e-34  Score=275.80  Aligned_cols=201  Identities=17%  Similarity=0.215  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.++.++ +||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||+. |+
T Consensus       143 ~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~-gi  221 (365)
T 2y7j_A          143 REATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN-NI  221 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            46788999999999 7999999884443     45999999754444443456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc------CccCCCCcchhhHHHHHHHHhC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT------GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +||||||+|||++.++.+||+|||++......   ....||+.|+|||++.+      ..++.++|||||||++|+|+||
T Consensus       222 ~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g  301 (365)
T 2y7j_A          222 VHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAG  301 (365)
T ss_dssp             ECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHS
T ss_pred             ecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHC
Confidence            99999999999999999999999998875543   34578999999999864      3588999999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCC--ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQF--SSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||...........    +.........  ....+..+.+||.+||+.||.+|||+.+++++
T Consensus       302 ~~pf~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          302 SPPFWHRRQILMLRM----IMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             SCSSCCSSHHHHHHH----HHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCCCCCHHHHHHH----HHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            999865432211111    1111100000  12346779999999999999999999999874

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=268.18  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.++.+++||||+.++..+.     .+||||++++ +...+......+++..+..++.||+.||.|||+. |+
T Consensus        68 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i  146 (314)
T 3com_A           68 LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM-RK  146 (314)
T ss_dssp             CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            478999999999999999999884333     4499999975 4444433467799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+||+++.++.+||+|||++......    ....|++.|+|||.+.+..++.++||||||+++|+|++|..||.
T Consensus       147 ~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  226 (314)
T 3com_A          147 IHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYA  226 (314)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999765433    23468899999999998889999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .......... ...  ........+..++..+.+||.+||+.||.+|||+.+++++
T Consensus       227 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~  279 (314)
T 3com_A          227 DIHPMRAIFM-IPT--NPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQH  279 (314)
T ss_dssp             TSCHHHHHHH-HHH--SCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCChHHHHHH-Hhc--CCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            5321111000 000  0011112345567889999999999999999999999874

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.6e-34  Score=285.60  Aligned_cols=202  Identities=14%  Similarity=0.099  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+.+|+.++++++||||+.++..+.     .+|||||+|+.+.........+++..+..++.||+.||.|||++ ||
T Consensus        89 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i  167 (504)
T 3q5i_A           89 FHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH-NI  167 (504)
T ss_dssp             THHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4578999999999999999999985444     34999999754433333456799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCC---CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDV---NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~---~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      +||||||+|||++.++   .+||+|||+++.....   ....||+.|+|||++. +.++.++||||+||++|+|++|..|
T Consensus       168 vH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~p  246 (504)
T 3q5i_A          168 VHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPP  246 (504)
T ss_dssp             ECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             EeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCC
Confidence            9999999999998776   6999999999876543   3457899999999987 5689999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCC--CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQ--FSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      |.+...........    .......  ....++.++.+||.+||+.||.+|||+.+++++-
T Consensus       247 f~~~~~~~~~~~i~----~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~  303 (504)
T 3q5i_A          247 FGGQNDQDIIKKVE----KGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSR  303 (504)
T ss_dssp             SCCSSHHHHHHHHH----HCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             CCCCCHHHHHHHHH----cCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCH
Confidence            87643322111111    1111000  0134578899999999999999999999999743

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.7e-34  Score=269.33  Aligned_cols=205  Identities=14%  Similarity=0.168  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHhhh---CCCeEEEeeeecc----------ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM---SSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        17 ~~~f~~E~~~l~~~---~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+.+|+.++..+   +||||+.++..+.          .+||||++|++...+... ...+++..+..++.||+.||.
T Consensus        55 ~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~  134 (326)
T 1blx_A           55 PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  134 (326)
T ss_dssp             BCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence            35778888888777   8999999884332          349999998777766543 456999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      |||++ |++||||||+||+++.++.+||+|||+++.....   ....+|+.|+|||++.+..++.++|||||||++|+|+
T Consensus       135 ~lH~~-gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  213 (326)
T 1blx_A          135 FLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF  213 (326)
T ss_dssp             HHHHT-TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             HHHHC-CceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999998875432   3456789999999999889999999999999999999


Q ss_pred             hCCCCCCchhhHHhhhcccccc------------------cc---ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTL------------------TD---SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      ||..||.+.............+                  ..   ......+...++..+.+||.+||+.||.+|||+.+
T Consensus       214 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  293 (326)
T 1blx_A          214 RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYS  293 (326)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHH
Confidence            9999987543211110000000                  00   00011233456788999999999999999999999


Q ss_pred             HHHH
Q 015733          219 LVTA  222 (401)
Q Consensus       219 vl~~  222 (401)
                      ++.+
T Consensus       294 ~l~h  297 (326)
T 1blx_A          294 ALSH  297 (326)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9863

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.1e-34  Score=269.86  Aligned_cols=200  Identities=14%  Similarity=0.141  Sum_probs=155.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcee
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALY   92 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH   92 (401)
                      ...|.+|+.++.+++||||+.++..+.    ..||||++++.+..+......+++..+..++.||+.||.|||++ |++|
T Consensus        59 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH  137 (322)
T 2ycf_A           59 ALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN-GIIH  137 (322)
T ss_dssp             --CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             hhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-Ceec
Confidence            346899999999999999999884443    34999998754444444567899999999999999999999999 9999


Q ss_pred             ccCCCCCEEECCCCC---eEEecccCccccCCCC---ccccccccCCccccc---cCccCCCCcchhhHHHHHHHHhCCC
Q 015733           93 HDLNAYRIVFDDDVN---PRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLR---TGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        93 ~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      |||||+|||++.++.   +||+|||+++......   ...||+.|+|||++.   ...++.++|||||||++|+|++|..
T Consensus       138 ~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~  217 (322)
T 2ycf_A          138 RDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYP  217 (322)
T ss_dssp             CCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999987664   9999999998765542   346899999999974   4568999999999999999999999


Q ss_pred             CCCchhhHHhhhcccccccccccc---CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLE---GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ||.......    .....+.....   ...+..++..+.+||.+||+.||.+|||+.++++
T Consensus       218 pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          218 PFSEHRTQV----SLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             SSCSTTCSS----CHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCcccchHH----HHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            986532110    00000000000   0111345778999999999999999999999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.1e-34  Score=268.92  Aligned_cols=203  Identities=14%  Similarity=0.138  Sum_probs=153.2

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+.+|+.++.++ +||||+.++..+.     .+||||++|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        54 ~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i  132 (316)
T 2ac3_A           54 RSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK-GI  132 (316)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            57899999999984 7999999885443     34999999654443333446799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCC---eEEecccCccccCCC-----------CccccccccCCcccccc-----CccCCCCcchhh
Q 015733           91 LYHDLNAYRIVFDDDVN---PRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRT-----GRVTPESVMYSF  151 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~sl  151 (401)
                      +||||||+|||++.++.   +||+|||++......           ....||+.|+|||++.+     ..++.++|||||
T Consensus       133 vH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diwsl  212 (316)
T 2ac3_A          133 AHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSL  212 (316)
T ss_dssp             CCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHH
T ss_pred             eeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhH
Confidence            99999999999998776   999999998764321           12358999999999875     568999999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHH-----------hhhccccccccccccCCCCh----HHHHHHHHHHHHhcccCCCCCCCH
Q 015733          152 GTLLLDLLSGKHIPPSHALDL-----------IRDRNIQTLTDSCLEGQFSS----DEGTELVRLASRCLQYEPRERPNP  216 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~~l~~li~~cl~~~p~~Rps~  216 (401)
                      ||++|+|+||..||.......           ........+...  ...++.    .++..+.+||.+||+.||.+|||+
T Consensus       213 G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~  290 (316)
T 2ac3_A          213 GVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEG--KYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSA  290 (316)
T ss_dssp             HHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHC--CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             HHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhcc--CcccCchhcccCCHHHHHHHHHHhhCChhhCCCH
Confidence            999999999999986532100           000000111111  112222    357789999999999999999999


Q ss_pred             HHHHHH
Q 015733          217 RSLVTA  222 (401)
Q Consensus       217 ~~vl~~  222 (401)
                      .+++++
T Consensus       291 ~e~l~h  296 (316)
T 2ac3_A          291 AQVLQH  296 (316)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999884

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=267.23  Aligned_cols=202  Identities=13%  Similarity=0.150  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCC--CCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE--TQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.|.+|+.+++.++||||+.++..+.     .+||||++++ +...+...  ...+++..+..++.|++.||.|||++ 
T Consensus        63 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-  141 (295)
T 2clq_A           63 SQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-  141 (295)
T ss_dssp             -HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence            477999999999999999999884443     3499999864 44444332  34567999999999999999999999 


Q ss_pred             CceeccCCCCCEEECC-CCCeEEecccCccccCCC----CccccccccCCccccccCc--cCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR--VTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++||||||+||+++. ++.+||+|||++......    ....|++.|+|||++.+..  ++.++||||||+++|+|++|
T Consensus       142 ~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g  221 (295)
T 2clq_A          142 QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATG  221 (295)
T ss_dssp             TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence            9999999999999987 899999999999875432    3456899999999997654  78899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ..||.........   ............++..++.++.++|.+||+.||.+|||+.+++.+
T Consensus       222 ~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          222 KPPFYELGEPQAA---MFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             SCTTGGGSSHHHH---HHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             CCCccCCCchhHH---HHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            9998543211100   000001112334567788899999999999999999999999864

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.7e-35  Score=281.17  Aligned_cols=208  Identities=12%  Similarity=0.181  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcccccccC--------CCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTFSNNFSG--------ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~--------~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.+|+.++.+++||||+.++..+.       .+||||++|++...+..        ....+++..++.++.||+.||
T Consensus        62 ~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al  141 (405)
T 3rgf_A           62 SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGI  141 (405)
T ss_dssp             CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999999874431       34999999877665531        234599999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEE----CCCCCeEEecccCccccCCC-------CccccccccCCccccccC-ccCCCCcch
Q 015733           82 EYCTSKERALYHDLNAYRIVF----DDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTG-RVTPESVMY  149 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~  149 (401)
                      .|||++ ||+||||||+|||+    +.++.+||+|||+++.....       ....||+.|+|||++.+. .++.++|||
T Consensus       142 ~~LH~~-~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diw  220 (405)
T 3rgf_A          142 HYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIW  220 (405)
T ss_dssp             HHHHHT-TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHH
T ss_pred             HHHHhC-CEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhH
Confidence            999999 99999999999999    67889999999999875432       235689999999999874 589999999


Q ss_pred             hhHHHHHHHHhCCCCCCchhhHHhhhc-----ccccccc------------------------ccccC------------
Q 015733          150 SFGTLLLDLLSGKHIPPSHALDLIRDR-----NIQTLTD------------------------SCLEG------------  188 (401)
Q Consensus       150 slG~~l~el~tg~~p~~~~~~~~~~~~-----~~~~~~~------------------------~~~~~------------  188 (401)
                      ||||++|+|+||..||...........     .+..++.                        .....            
T Consensus       221 SlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (405)
T 3rgf_A          221 AIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYME  300 (405)
T ss_dssp             HHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHh
Confidence            999999999999999864321100000     0000000                        00000            


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ......+..+.+||.+||+.||.+|||+.+++++-+.
T Consensus       301 ~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f  337 (405)
T 3rgf_A          301 KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  337 (405)
T ss_dssp             TTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred             hcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhh
Confidence            0001125678999999999999999999999986544

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=272.42  Aligned_cols=212  Identities=16%  Similarity=0.169  Sum_probs=155.3

Q ss_pred             hHHHHHHHHH--HhhhCCCeEEEeeeec-----c-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVL--IASMSSFILLAVIFMF-----Q-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        17 ~~~f~~E~~~--l~~~~h~niv~~~~~~-----~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+..|..+  +..++||||++++...     .     .+||||++++ +...+.  ...+++..+..++.||+.||.|
T Consensus        49 ~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~qi~~~L~~  126 (336)
T 3g2f_A           49 RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS--LHTSDWVSSCRLAHSVTRGLAY  126 (336)
T ss_dssp             HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHh--hcccchhHHHHHHHHHHHHHHH
Confidence            3455555554  4568999999887311     1     3599999865 544443  2346999999999999999999


Q ss_pred             HhcCC--------CceeccCCCCCEEECCCCCeEEecccCccccCCC------------CccccccccCCcccccc----
Q 015733           84 CTSKE--------RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------------RSYSTNLAFTPPEYLRT----  139 (401)
Q Consensus        84 lH~~~--------~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------------~~~~~~~~y~aPE~~~~----  139 (401)
                      ||+..        ||+||||||+|||++.++.+||+|||+++.....            ....||+.|+|||++.+    
T Consensus       127 LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  206 (336)
T 3g2f_A          127 LHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNL  206 (336)
T ss_dssp             HHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCG
T ss_pred             HHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCccc
Confidence            99873        8999999999999999999999999999865321            13458999999999986    


Q ss_pred             ---CccCCCCcchhhHHHHHHHHhCCCCCCchhhHH---------hhh-c---ccc-ccccccccCCC------ChHHHH
Q 015733          140 ---GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL---------IRD-R---NIQ-TLTDSCLEGQF------SSDEGT  196 (401)
Q Consensus       140 ---~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~---------~~~-~---~~~-~~~~~~~~~~~------~~~~~~  196 (401)
                         ..++.++|||||||++|||+||..||.......         ... .   ... .+........+      ...++.
T Consensus       207 ~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (336)
T 3g2f_A          207 RDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVR  286 (336)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHH
Confidence               456789999999999999999987654321000         000 0   000 00011111222      234778


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          197 ELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       197 ~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      .+.+||.+||+.||.+|||+.++++.|+.+....
T Consensus       287 ~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          287 SLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998886543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.5e-34  Score=268.08  Aligned_cols=202  Identities=16%  Similarity=0.154  Sum_probs=156.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccccc-ccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNN-FSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~-~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++||||+.++..+.     ..||||++++.+.. +......+++..+..++.||+.||.|||+. |
T Consensus        59 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~  137 (302)
T 2j7t_A           59 ELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK-R  137 (302)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC-C
Confidence            3478999999999999999999884433     34999999764443 333356799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccC----CCCccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR----DGRSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++||||||+||+++.++.+||+|||++....    ......||+.|+|||++.     +..++.++||||||+++|+|++
T Consensus       138 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~  217 (302)
T 2j7t_A          138 IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQ  217 (302)
T ss_dssp             CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999875422    233457899999999984     5678999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |..||...............   .......+..++..+.++|.+||+.||.+|||+.++++
T Consensus       218 g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          218 IEPPHHELNPMRVLLKIAKS---DPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             SSCTTTTSCHHHHHHHHHHS---CCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             CCCCCccCCHHHHHHHHhcc---CCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            99997653221111100000   00111234567788999999999999999999999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=5.8e-34  Score=269.59  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccc-----cCC--CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNF-----SGE--TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~-----~~~--~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      +.|.+|+.++.+++||||+.++..+.     ..||||++|+ +...+     ...  ...+++..++.++.||+.||.||
T Consensus        88 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  167 (348)
T 2pml_X           88 DDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI  167 (348)
T ss_dssp             HHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999885433     3499999974 44441     333  67899999999999999999999


Q ss_pred             hc-CCCceeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccC-ccCC-CCcchhhHHHHHHHH
Q 015733           85 TS-KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTG-RVTP-ESVMYSFGTLLLDLL  159 (401)
Q Consensus        85 H~-~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~-~~~~-~~Dv~slG~~l~el~  159 (401)
                      |+ . |++||||||+||+++.++.+||+|||++......  ....+++.|+|||.+.+. .++. ++||||||+++|+|+
T Consensus       168 H~~~-~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~  246 (348)
T 2pml_X          168 HNEK-NICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMF  246 (348)
T ss_dssp             HHTS-CEECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHH
T ss_pred             hccC-CEeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHH
Confidence            99 8 9999999999999999999999999999875443  345689999999999876 5666 999999999999999


Q ss_pred             hCCCCCCchhh-HHhhhccccc-cccccc------------cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          160 SGKHIPPSHAL-DLIRDRNIQT-LTDSCL------------EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~-~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|..||..... .......... ...+..            .......++..+.+||.+||+.||.+|||+.+++++
T Consensus       247 ~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          247 YNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             HSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            99999865422 1110000000 000000            000114567889999999999999999999999873

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=5.6e-34  Score=267.71  Aligned_cols=203  Identities=14%  Similarity=0.155  Sum_probs=157.3

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++.+++ ||||+.++..+.       .+||||++++.+..+..   .+++..+..++.||+.||.|||++
T Consensus        73 ~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~  149 (330)
T 3nsz_A           73 KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ---TLTDYDIRFYMYEILKALDYCHSM  149 (330)
T ss_dssp             CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG---GCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH---hCCHHHHHHHHHHHHHHHHHHHhC
Confidence            4578999999999997 999999884433       34999999765444442   489999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCC-CeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCC
Q 015733           88 ERALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                       ||+||||||+|||++.++ .+||+|||+++.....   ....+++.|+|||.+.+ ..++.++|||||||++|+|++|.
T Consensus       150 -~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~  228 (330)
T 3nsz_A          150 -GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRK  228 (330)
T ss_dssp             -TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTC
T ss_pred             -CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCC
Confidence             999999999999999777 8999999999865433   34568899999999987 66899999999999999999999


Q ss_pred             CCCCchhhHHh---------hhccc-----------------------cccccccccCCCChHHHHHHHHHHHHhcccCC
Q 015733          163 HIPPSHALDLI---------RDRNI-----------------------QTLTDSCLEGQFSSDEGTELVRLASRCLQYEP  210 (401)
Q Consensus       163 ~p~~~~~~~~~---------~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p  210 (401)
                      .||........         .....                       ............+..++.++.+||.+||+.||
T Consensus       229 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  308 (330)
T 3nsz_A          229 EPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDH  308 (330)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSG
T ss_pred             CCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCc
Confidence            99843211000         00000                       00000111122233468899999999999999


Q ss_pred             CCCCCHHHHHHH
Q 015733          211 RERPNPRSLVTA  222 (401)
Q Consensus       211 ~~Rps~~~vl~~  222 (401)
                      .+|||+.+++++
T Consensus       309 ~~Rpta~e~l~h  320 (330)
T 3nsz_A          309 QSRLTAREAMEH  320 (330)
T ss_dssp             GGSCCHHHHHTS
T ss_pred             ccCCCHHHHhcC
Confidence            999999999874

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=272.62  Aligned_cols=202  Identities=10%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             hhHHHHHHHHHHhhhC---CCeEEEeeeecc-----ccEeeecCCc-ccccccC----CCCCCCHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS---SFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG----ETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~---h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ...+|..|+.++..++   |+|++.++....     .+||||++|+ +...+..    ....+++..++.++.||+.||.
T Consensus       107 ~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~  186 (365)
T 3e7e_A          107 NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIE  186 (365)
T ss_dssp             CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            3567888998888887   899998884433     4599999964 4444432    4567999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECC-----------CCCeEEecccCccccC---CC---CccccccccCCccccccCccCCC
Q 015733           83 YCTSKERALYHDLNAYRIVFDD-----------DVNPRLSCFGLMKNSR---DG---RSYSTNLAFTPPEYLRTGRVTPE  145 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~-----------~~~~kl~Dfg~~~~~~---~~---~~~~~~~~y~aPE~~~~~~~~~~  145 (401)
                      |||++ |||||||||+|||++.           ++.+||+|||+++...   ..   ....||+.|+|||++.+..++.+
T Consensus       187 ~lH~~-~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  265 (365)
T 3e7e_A          187 QVHDC-EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQ  265 (365)
T ss_dssp             HHHTT-TEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTH
T ss_pred             HHhhC-CeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCcc
Confidence            99999 9999999999999998           8999999999997533   11   34568999999999999889999


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCC-CCHHHHHHHHH
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRER-PNPRSLVTALV  224 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R-ps~~~vl~~l~  224 (401)
                      +|||||||++|||+||+.||......      ... ....+. ..  ..+..+.+++..||+.+|.+| |++.++.+.|+
T Consensus       266 ~DiwslG~il~elltg~~pf~~~~~~------~~~-~~~~~~-~~--~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~  335 (365)
T 3e7e_A          266 IDYFGVAATVYCMLFGTYMKVKNEGG------ECK-PEGLFR-RL--PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK  335 (365)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCEEEETT------EEE-ECSCCT-TC--SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhCCCccccCCCC------cee-echhcc-cc--CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Confidence            99999999999999999997543211      000 111111 11  236678899999999999999 57888888887


Q ss_pred             cccc
Q 015733          225 TLQK  228 (401)
Q Consensus       225 ~~~~  228 (401)
                      .+..
T Consensus       336 ~~l~  339 (365)
T 3e7e_A          336 KVFQ  339 (365)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.2e-34  Score=268.71  Aligned_cols=206  Identities=14%  Similarity=0.222  Sum_probs=148.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-------CCCCCCHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-------ETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-------~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      ..++|.+|+.++.+++||||+.++..+.     ..||||++|+ +...+..       ....+++..+..++.||+.||.
T Consensus        56 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  135 (303)
T 2vwi_A           56 SMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLE  135 (303)
T ss_dssp             ----------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999884433     3499999864 4444331       3566999999999999999999


Q ss_pred             HHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---------CccccccccCCcccccc-CccCCCCcchhhH
Q 015733           83 YCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFG  152 (401)
Q Consensus        83 ~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG  152 (401)
                      |||++ |++||||||+||+++.++.+||+|||++......         ....||+.|+|||.+.+ ..++.++||||||
T Consensus       136 ~lH~~-~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG  214 (303)
T 2vwi_A          136 YLHKN-GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFG  214 (303)
T ss_dssp             HHHHT-TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHH
T ss_pred             HHHhC-CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHH
Confidence            99999 9999999999999999999999999998764322         23467899999999876 5689999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhh----hccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIR----DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +++|+|+||..||.........    ...................++..+.+||.+||+.||.+|||+.+++++
T Consensus       215 ~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          215 ITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             HHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            9999999999998653211110    000011101111122334567789999999999999999999999873

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=4.6e-34  Score=264.34  Aligned_cols=204  Identities=16%  Similarity=0.163  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.++. ||||++++..+.     .+||||++++.+..+......+++..+..++.||+.||.|||++ |
T Consensus        66 ~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  144 (298)
T 1phk_A           66 LREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL-N  144 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999996 999999885443     34999999654444433456799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccc------cCccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLR------TGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~------~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++||||||+||+++.++.+||+|||++......   ....+++.|+|||++.      ...++.++||||||+++|+|++
T Consensus       145 i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~  224 (298)
T 1phk_A          145 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA  224 (298)
T ss_dssp             EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHH
Confidence            999999999999999999999999999875543   2346889999999985      3568899999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |..||.................  .........++..+.++|.+||+.||.+|||+.+++++
T Consensus       225 g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          225 GSPPFWHRKQMLMLRMIMSGNY--QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             SSCSSCCSSHHHHHHHHHHTCC--CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CCCCCcCccHHHHHHHHhcCCc--ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence            9999865432211111111100  01111224567889999999999999999999999863

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=3.8e-34  Score=271.38  Aligned_cols=204  Identities=12%  Similarity=0.162  Sum_probs=158.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ....+.+|+.++.+++||||+.++....          ..||||+++++...+..  ..+++..+..++.|++.||.|||
T Consensus        52 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH  129 (353)
T 2b9h_A           52 FALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLH  129 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCSEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccCccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999998884321          34999999877766643  46999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------------CccccccccCCcccccc-CccCCCCcchh
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------------RSYSTNLAFTPPEYLRT-GRVTPESVMYS  150 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~s  150 (401)
                      ++ |++||||||+|||++.++.+||+|||+++.....              ....||+.|+|||++.+ ..++.++||||
T Consensus       130 ~~-~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~s  208 (353)
T 2b9h_A          130 GS-NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWS  208 (353)
T ss_dssp             HT-TEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHH
T ss_pred             HC-CeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHH
Confidence            99 9999999999999999999999999999865421              12357899999998765 67899999999


Q ss_pred             hHHHHHHHHhCCCCCCchhhHHhhhcc------------cc--------cccccc--cc----CCCChHHHHHHHHHHHH
Q 015733          151 FGTLLLDLLSGKHIPPSHALDLIRDRN------------IQ--------TLTDSC--LE----GQFSSDEGTELVRLASR  204 (401)
Q Consensus       151 lG~~l~el~tg~~p~~~~~~~~~~~~~------------~~--------~~~~~~--~~----~~~~~~~~~~l~~li~~  204 (401)
                      |||++|+|++|..||.+..........            ..        ......  ..    ......++.++.+||.+
T Consensus       209 lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  288 (353)
T 2b9h_A          209 CGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQR  288 (353)
T ss_dssp             HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHH
Confidence            999999999999998764321110000            00        000000  00    00123567889999999


Q ss_pred             hcccCCCCCCCHHHHHHH
Q 015733          205 CLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       205 cl~~~p~~Rps~~~vl~~  222 (401)
                      ||+.||.+|||+.+++++
T Consensus       289 ~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          289 MLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             HSCSSGGGSCCHHHHHTS
T ss_pred             hcCcCcccCCCHHHHhcC
Confidence            999999999999999874

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=268.05  Aligned_cols=202  Identities=11%  Similarity=0.131  Sum_probs=153.7

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----------ccEeeecCC-cccccccC-CCCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----------IPSYEFHCL-TFSNNFSG-ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----------~~v~Ey~~~-~l~~~~~~-~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ..+.|.+|+.++.++ +||||+.++..+.           .+||||+++ ++...+.. ....+++..+..++.||+.||
T Consensus        63 ~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  142 (326)
T 2x7f_A           63 EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL  142 (326)
T ss_dssp             TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999 7999998884332           359999997 45444433 236799999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccc-----cCccCCCCcchhhH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLR-----TGRVTPESVMYSFG  152 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG  152 (401)
                      .|||+. |++||||||+||+++.++.+||+|||++......    ....|++.|+|||++.     +..++.++||||||
T Consensus       143 ~~lH~~-~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG  221 (326)
T 2x7f_A          143 SHLHQH-KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLG  221 (326)
T ss_dssp             HHHHHT-TCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHH
T ss_pred             HHHHHC-CccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHH
Confidence            999999 9999999999999999999999999998865432    3456899999999987     45689999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |++|+|+||..||.........    ..+.........+..++..+.+||.+||+.||.+|||+.+++++
T Consensus       222 ~il~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          222 ITAIEMAEGAPPLCDMHPMRAL----FLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             HHHHHHHHSSCTTTTSCHHHHH----HHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHhCCCCCCCCcHHHHH----HHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            9999999999998653211111    11111111112234567889999999999999999999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1e-33  Score=262.20  Aligned_cols=202  Identities=18%  Similarity=0.262  Sum_probs=153.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec------------------cccEeeecCC-cccccccCCCCCCCHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF------------------QIPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALH   76 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~------------------~~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~q   76 (401)
                      ..+.|.+|+.++.+++||||++++..+                  ..+||||++| ++...+......+++..++.++.|
T Consensus        45 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~q  124 (303)
T 1zy4_A           45 KLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQ  124 (303)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHH
Confidence            346799999999999999999887432                  1349999986 565555545567899999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------------------CccccccccCCccccc
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------------------RSYSTNLAFTPPEYLR  138 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------------------~~~~~~~~y~aPE~~~  138 (401)
                      ++.||.|||++ |++||||||+||+++.++.+||+|||++......                  ....|++.|+|||++.
T Consensus       125 i~~~l~~LH~~-~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  203 (303)
T 1zy4_A          125 ILEALSYIHSQ-GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLD  203 (303)
T ss_dssp             HHHHHHHHHHT-TCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHT
T ss_pred             HHHHHHHHHhC-CeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCccccc
Confidence            99999999999 9999999999999999999999999998865421                  2345789999999998


Q ss_pred             cC-ccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          139 TG-RVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       139 ~~-~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      +. .++.++|||||||++|+|++   ||............... ........++...+..+.++|.+||+.||.+|||+.
T Consensus       204 ~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  279 (303)
T 1zy4_A          204 GTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRS-VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR  279 (303)
T ss_dssp             SCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHS-TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccc-cccccCccccccchHHHHHHHHHHHhcCcccCcCHH
Confidence            64 68999999999999999998   44322111100000111 111223345566778899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      +++++
T Consensus       280 ~ll~h  284 (303)
T 1zy4_A          280 TLLNS  284 (303)
T ss_dssp             HHHHS
T ss_pred             HHhCC
Confidence            99874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.2e-34  Score=269.12  Aligned_cols=203  Identities=15%  Similarity=0.223  Sum_probs=141.1

Q ss_pred             hHHHHHHHH-HHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccC----CCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLV-LIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG----ETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~-~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~----~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ..++..|+. +++.++||||+.++..+.     .+||||++|++...+..    ....+++..+..++.|++.||.|||+
T Consensus        64 ~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  143 (327)
T 3aln_A           64 QKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE  143 (327)
T ss_dssp             HHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc
Confidence            356667766 778889999999885433     34999999876665542    35679999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccc----ccCccCCCCcchhhHHHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYL----RTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~----~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      ..|++||||||+||+++.++.+||+|||+++.....   ....||+.|+|||++    .+..++.++|||||||++|+|+
T Consensus       144 ~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~  223 (327)
T 3aln_A          144 NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELA  223 (327)
T ss_dssp             HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHH
T ss_pred             cCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHH
Confidence            658999999999999999999999999999875443   233688999999998    4566899999999999999999


Q ss_pred             hCCCCCCchhhHHhhhcccccccc---ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          160 SGKHIPPSHALDLIRDRNIQTLTD---SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       160 tg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +|..||.......   .....+..   +.+.......++..+.+||.+||+.||.+|||+.++++.
T Consensus       224 ~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          224 TGRFPYPKWNSVF---DQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             HSCCCSSCC----------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HCCCCCCCcchHH---HHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            9999986532111   11111111   111112234577889999999999999999999999873

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.7e-34  Score=276.70  Aligned_cols=200  Identities=14%  Similarity=0.138  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           18 TYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..+.+|+.++.++ +||||++++..+.     .+|||||+|++...+......+++..++.++.||+.||.|||++ ||+
T Consensus        62 ~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~iv  140 (432)
T 3p23_A           62 SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL-NIV  140 (432)
T ss_dssp             EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC-cCE
Confidence            4577899999999 7999999984443     35999999988888776666667667789999999999999999 999


Q ss_pred             eccCCCCCEEECC-----CCCeEEecccCccccCCC-------CccccccccCCcccccc---CccCCCCcchhhHHHHH
Q 015733           92 YHDLNAYRIVFDD-----DVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLL  156 (401)
Q Consensus        92 H~dlk~~Nill~~-----~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~  156 (401)
                      ||||||+|||++.     ...+||+|||+++.....       ....||+.|+|||++.+   ..++.++|||||||++|
T Consensus       141 HrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~  220 (432)
T 3p23_A          141 HRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFY  220 (432)
T ss_dssp             CCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHH
T ss_pred             eCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHH
Confidence            9999999999953     235789999999875432       23568999999999984   56788999999999999


Q ss_pred             HHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          157 DLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       157 el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ||+| |..||........... .......  ....+...+..+.+||.+||+.||.+|||+.+|++
T Consensus       221 ellt~g~~pf~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          221 YVISEGSHPFGKSLQRQANIL-LGACSLD--CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             HHHTTSCBTTBSTTTHHHHHH-TTCCCCT--TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHcCCCCCcchhhHHHHHHH-hccCCcc--ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            9999 7777643322111110 0000000  11123456777899999999999999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.3e-33  Score=267.61  Aligned_cols=206  Identities=15%  Similarity=0.159  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHhhhCCCe------EEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFI------LLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~n------iv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ..+.+.+|+.++.+++|++      ++.+...+.     .+||||+++++...+... ..++++..+..++.||+.||.|
T Consensus        59 ~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~  138 (355)
T 2eu9_A           59 YREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRF  138 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            4578889999999998876      555553322     359999988877766543 4679999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEE-------------------CCCCCeEEecccCccccCCC-CccccccccCCccccccCccC
Q 015733           84 CTSKERALYHDLNAYRIVF-------------------DDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVT  143 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill-------------------~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  143 (401)
                      ||++ ||+||||||+|||+                   +.++.+||+|||+++..... ....||+.|+|||++.+..++
T Consensus       139 lH~~-~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  217 (355)
T 2eu9_A          139 LHEN-QLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWA  217 (355)
T ss_dssp             HHTT-TEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCC
T ss_pred             HHHC-CcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCC
Confidence            9999 99999999999999                   56789999999999875543 445789999999999988999


Q ss_pred             CCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcc---ccc----c------------------------------cccc-
Q 015733          144 PESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN---IQT----L------------------------------TDSC-  185 (401)
Q Consensus       144 ~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~---~~~----~------------------------------~~~~-  185 (401)
                      .++|||||||++|||+||..||............   ...    +                              ..+. 
T Consensus       218 ~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 2eu9_A          218 QPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLK  297 (355)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGG
T ss_pred             CccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCccc
Confidence            9999999999999999999998654221100000   000    0                              0000 


Q ss_pred             ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       186 ~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .........+..+.+||.+||+.||.+|||+.+++++
T Consensus       298 ~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  334 (355)
T 2eu9_A          298 SYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLH  334 (355)
T ss_dssp             GGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            0001123457789999999999999999999999863

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=266.20  Aligned_cols=204  Identities=15%  Similarity=0.197  Sum_probs=157.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeec-------------------cccEeeecCCcccccccCCCCCCCHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMF-------------------QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALH   76 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~-------------------~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~q   76 (401)
                      ..+.|.+|+.++++++||||++++..+                   ..+||||++|++...+.  .+++++..++.++.|
T Consensus        51 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~--~~~~~~~~~~~~~~q  128 (320)
T 2i6l_A           51 SVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLE--QGPLLEEHARLFMYQ  128 (320)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCSEEHHHHHT--TCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccCCCHHHHhh--cCCccHHHHHHHHHH
Confidence            357899999999999999999987432                   13599999987777664  357999999999999


Q ss_pred             HHHHHHHHhcCCCceeccCCCCCEEEC-CCCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCc
Q 015733           77 IAEALEYCTSKERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESV  147 (401)
Q Consensus        77 i~~~l~~lH~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~D  147 (401)
                      ++.||.|||++ |++||||||+||+++ .++.+||+|||+++.....       ....++..|+|||.+.+ ..++.++|
T Consensus       129 i~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  207 (320)
T 2i6l_A          129 LLRGLKYIHSA-NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAID  207 (320)
T ss_dssp             HHHHHHHHHHT-TCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHH
T ss_pred             HHHHHHHHHhC-CEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhh
Confidence            99999999999 999999999999997 5679999999999875422       23356889999998876 67899999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhhhccccc-----------c-------cccccc-C-----CCChHHHHHHHHHHH
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQT-----------L-------TDSCLE-G-----QFSSDEGTELVRLAS  203 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~-----------~-------~~~~~~-~-----~~~~~~~~~l~~li~  203 (401)
                      ||||||++|||+||+.||...............           +       ...... .     ..+..++.++.+||.
T Consensus       208 i~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  287 (320)
T 2i6l_A          208 MWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLE  287 (320)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHH
T ss_pred             hHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHH
Confidence            999999999999999998654321111000000           0       000000 0     112346788999999


Q ss_pred             HhcccCCCCCCCHHHHHHH
Q 015733          204 RCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       204 ~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||+.||.+|||+.+++++
T Consensus       288 ~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          288 QILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             TTSCSSGGGSCCHHHHHTS
T ss_pred             HHcCCCccccCCHHHHhCC
Confidence            9999999999999999874

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=7.8e-34  Score=276.78  Aligned_cols=203  Identities=18%  Similarity=0.207  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCC------CCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQP------MKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~------l~~~~~~~i~~qi~~~l~~l   84 (401)
                      .+.+.+|+.++.++ +||||++++..+.     .+||||++|++...+......      .++..++.++.||+.||.||
T Consensus        52 ~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L  131 (434)
T 2rio_A           52 CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHL  131 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHH
Confidence            35688999999887 8999999984443     349999988777766543211      13334678999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCC-------------CCeEEecccCccccCCCC--------ccccccccCCcccccc----
Q 015733           85 TSKERALYHDLNAYRIVFDDD-------------VNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRT----  139 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~-------------~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~----  139 (401)
                      |++ ||+||||||+|||++.+             +.+||+|||+++......        ...||+.|+|||++.+    
T Consensus       132 H~~-~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  210 (434)
T 2rio_A          132 HSL-KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNL  210 (434)
T ss_dssp             HHT-TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTT
T ss_pred             HHC-CccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhcccccc
Confidence            999 99999999999999754             479999999998755432        3468999999999975    


Q ss_pred             ---CccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhcccccccc-ccccCCCChHHHHHHHHHHHHhcccCCCCCC
Q 015733          140 ---GRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTD-SCLEGQFSSDEGTELVRLASRCLQYEPRERP  214 (401)
Q Consensus       140 ---~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  214 (401)
                         ..++.++|||||||++|||+| |..||........  ........ +......+..++.++.+||.+||+.||.+||
T Consensus       211 ~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  288 (434)
T 2rio_A          211 QTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES--NIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRP  288 (434)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH--HHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSC
T ss_pred             ccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH--HHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCC
Confidence               568999999999999999999 8888754322111  00111100 1111122456789999999999999999999


Q ss_pred             CHHHHHHH
Q 015733          215 NPRSLVTA  222 (401)
Q Consensus       215 s~~~vl~~  222 (401)
                      |+.+|+++
T Consensus       289 s~~eil~h  296 (434)
T 2rio_A          289 TAMKVLRH  296 (434)
T ss_dssp             CHHHHHTS
T ss_pred             CHHHHHhC
Confidence            99999863

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.5e-33  Score=265.24  Aligned_cols=206  Identities=14%  Similarity=0.194  Sum_probs=160.0

Q ss_pred             hhHHHHHHHHHHhhhCCCe------EEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFI------LLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~n------iv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ..+.+.+|+.++..++|++      ++.++..+.     .+||||+.+++...+... ..++++..+..++.||+.||.|
T Consensus        54 ~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  133 (339)
T 1z57_A           54 YCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNF  133 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3477899999999998875      666663332     459999977777766543 3579999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECC-------------------CCCeEEecccCccccCCC-CccccccccCCccccccCccC
Q 015733           84 CTSKERALYHDLNAYRIVFDD-------------------DVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVT  143 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~-------------------~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  143 (401)
                      ||++ ||+||||||+|||++.                   ++.+||+|||+++..... ....||+.|+|||++.+..++
T Consensus       134 lH~~-~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  212 (339)
T 1z57_A          134 LHSN-KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWS  212 (339)
T ss_dssp             HHHT-TEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCC
T ss_pred             HHHC-CCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCC
Confidence            9999 9999999999999987                   668999999999875543 345789999999999988999


Q ss_pred             CCCcchhhHHHHHHHHhCCCCCCchhhHHhhhcc---ccc----------------------------------ccccc-
Q 015733          144 PESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRN---IQT----------------------------------LTDSC-  185 (401)
Q Consensus       144 ~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~---~~~----------------------------------~~~~~-  185 (401)
                      .++|||||||++|||++|..||............   ...                                  ...+. 
T Consensus       213 ~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
T 1z57_A          213 QPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLK  292 (339)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGG
T ss_pred             cchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchh
Confidence            9999999999999999999998654221110000   000                                  00000 


Q ss_pred             ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       186 ~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .....+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       293 ~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          293 EFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             GGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             hhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence            0011234567889999999999999999999999864

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2e-33  Score=268.38  Aligned_cols=208  Identities=15%  Similarity=0.218  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHhhhC-----------CCeEEEeeeecc---------ccEeeecCCcccccccC-CCCCCCHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMS-----------SFILLAVIFMFQ---------IPSYEFHCLTFSNNFSG-ETQPMKWAMRLRVA   74 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-----------h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~-~~~~l~~~~~~~i~   74 (401)
                      ..+.+.+|+.++.+++           ||||+.++..+.         .+||||+.+++...+.. ....+++..+..++
T Consensus        58 ~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~  137 (373)
T 1q8y_A           58 YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQIS  137 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHH
T ss_pred             chhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHH
Confidence            4577889999999887           789888874322         44999997677666654 34569999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEEC------CCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFD------DDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~------~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      .||+.||.|||++.||+||||||+|||++      ..+.+||+|||+++..... ....+|+.|+|||++.+..++.++|
T Consensus       138 ~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  217 (373)
T 1q8y_A          138 KQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGAD  217 (373)
T ss_dssp             HHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             HHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHh
Confidence            99999999999965899999999999994      4457999999999875543 3457899999999999988999999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHHhh--hcccc-------------------------------cccc-------c--c
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDLIR--DRNIQ-------------------------------TLTD-------S--C  185 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~~~--~~~~~-------------------------------~~~~-------~--~  185 (401)
                      ||||||++|||+||..||.........  .....                               .+..       .  .
T Consensus       218 i~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (373)
T 1q8y_A          218 IWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT  297 (373)
T ss_dssp             HHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhh
Confidence            999999999999999998643211000  00000                               0000       0  0


Q ss_pred             ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       186 ~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ....++...+.++.+||.+||+.||.+|||+.+++++-
T Consensus       298 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  335 (373)
T 1q8y_A          298 EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHP  335 (373)
T ss_dssp             HTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCG
T ss_pred             hcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhCh
Confidence            01235677899999999999999999999999998743

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.5e-33  Score=259.75  Aligned_cols=200  Identities=13%  Similarity=0.153  Sum_probs=156.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++||||++++..+.     ..||||++++ +...+. ....+++..++.++.||+.||.|||++ |
T Consensus        64 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~LH~~-~  141 (287)
T 2wei_A           64 DTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEII-KRKRFSEHDAARIIKQVFSGITYMHKH-N  141 (287)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999884443     3499999865 444443 345799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC---CCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           90 ALYHDLNAYRIVFDDD---VNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~---~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ++||||||+||+++.+   +.+||+|||++.......   ...+++.|+|||.+.+ .++.++||||||+++|+|++|..
T Consensus       142 i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~  220 (287)
T 2wei_A          142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTP  220 (287)
T ss_dssp             CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCC
Confidence            9999999999999754   469999999988755432   3357899999999875 58999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCC--ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQF--SSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||..........    .+.........  ...++.++.++|.+||+.||.+|||+.++++.
T Consensus       221 p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          221 PFYGKNEYDILK----RVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             SSCCSSHHHHHH----HHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             CCCCCCHHHHHH----HHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            986643221111    11111111111  13467789999999999999999999999973

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=7.3e-33  Score=265.63  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHhhhC-CCe-----EEEeeeecc-----ccEeeecCCcccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMS-SFI-----LLAVIFMFQ-----IPSYEFHCLTFSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~n-----iv~~~~~~~-----~~v~Ey~~~~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ..++..|+.++..++ |++     ++.+...+.     .+||||+++++...+... ...+++..+..++.|++.||.||
T Consensus        94 ~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~l  173 (382)
T 2vx3_A           94 LNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFL  173 (382)
T ss_dssp             HHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHh
Confidence            466778999988886 443     666663332     359999998877776644 36799999999999999999999


Q ss_pred             hcC-CCceeccCCCCCEEEC--CCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           85 TSK-ERALYHDLNAYRIVFD--DDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        85 H~~-~~ivH~dlk~~Nill~--~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      |+. .||+||||||+|||++  .++.+||+|||+++..... ....+|+.|+|||++.+..++.++|||||||++|||+|
T Consensus       174 H~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt  253 (382)
T 2vx3_A          174 ATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHT  253 (382)
T ss_dssp             TSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence            952 3899999999999995  4788999999999876544 45678999999999999899999999999999999999


Q ss_pred             CCCCCCch
Q 015733          161 GKHIPPSH  168 (401)
Q Consensus       161 g~~p~~~~  168 (401)
                      |+.||.+.
T Consensus       254 g~~pf~~~  261 (382)
T 2vx3_A          254 GEPLFSGA  261 (382)
T ss_dssp             SSCSSCCS
T ss_pred             CCCCCCCC
Confidence            99998754

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1.9e-33  Score=262.18  Aligned_cols=203  Identities=15%  Similarity=0.209  Sum_probs=156.6

Q ss_pred             hhHHHHHHHHHHhhhCC--CeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSS--FILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h--~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..+.|.+|+.++.+++|  |||+.++....     .+|||+..+++...+. ....+++..+..++.|++.||.|||++ 
T Consensus        69 ~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~LH~~-  146 (313)
T 3cek_A           69 TLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQH-  146 (313)
T ss_dssp             HHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEECCCSEEHHHHHH-HCSSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             chHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEecCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            45789999999999985  89998884333     3499966666666654 346799999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc-----------CccCCCCcchhh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT-----------GRVTPESVMYSF  151 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~sl  151 (401)
                      |++||||||+|||+++ +.+||+|||+++.....      ....|++.|+|||.+.+           ..++.++|||||
T Consensus       147 ~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~sl  225 (313)
T 3cek_A          147 GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  225 (313)
T ss_dssp             TCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHH
T ss_pred             CceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHH
Confidence            9999999999999964 89999999999875432      23467999999999875           467889999999


Q ss_pred             HHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          152 GTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       152 G~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      |+++|+|++|..||.......   ..............++...+..+.++|.+||+.||.+|||+.++++.-.
T Consensus       226 G~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~  295 (313)
T 3cek_A          226 GCILYYMTYGKTPFQQIINQI---SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY  295 (313)
T ss_dssp             HHHHHHHHHSSCTTTTCCSHH---HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HHHHHHHHhCCCchhhHHHHH---HHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCcc
Confidence            999999999999986532111   1112222333333455566788999999999999999999999997543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.5e-33  Score=264.21  Aligned_cols=198  Identities=14%  Similarity=0.158  Sum_probs=132.0

Q ss_pred             HHhhhCCCeEEEeeeecc---------ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCceecc
Q 015733           26 LIASMSSFILLAVIFMFQ---------IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYCTSKERALYHD   94 (401)
Q Consensus        26 ~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~d   94 (401)
                      .+..+.|||++.++..+.         .+||||++|+ +...+... ...+++..++.++.||+.||.|||++ ||+|||
T Consensus        75 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~-~ivH~d  153 (336)
T 3fhr_A           75 HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH-NIAHRD  153 (336)
T ss_dssp             HHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT-TEECSC
T ss_pred             HHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCC
Confidence            356678999888874332         3499999974 55555443 35799999999999999999999999 999999


Q ss_pred             CCCCCEEECC---CCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           95 LNAYRIVFDD---DVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        95 lk~~Nill~~---~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |||+|||++.   ++.+||+|||+++.....  ....+|+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       154 lkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (336)
T 3fhr_A          154 VKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT  233 (336)
T ss_dssp             CSGGGEEESCSSTTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            9999999986   455999999999875543  34567999999999988889999999999999999999999986543


Q ss_pred             hHHhhhcccccccccc--ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSC--LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      ...........+....  ........++.++.+||.+||+.||.+|||+.+++++-+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~  290 (336)
T 3fhr_A          234 GQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPW  290 (336)
T ss_dssp             -----------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHH
T ss_pred             chhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcc
Confidence            2222111111111111  111222457888999999999999999999999998443

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.98  E-value=2e-33  Score=261.96  Aligned_cols=195  Identities=18%  Similarity=0.257  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHhhh----CCCeEEEeeeecc-----ccEeee-cCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASM----SSFILLAVIFMFQ-----IPSYEF-HCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~----~h~niv~~~~~~~-----~~v~Ey-~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+.+|+.++.++    +||||+.++..+.     ..|||| +.++.+..+.....++++..++.++.||+.||.|||+
T Consensus        78 ~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~  157 (312)
T 2iwi_A           78 SVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHS  157 (312)
T ss_dssp             -CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999    8999999885443     349999 6654443333345679999999999999999999999


Q ss_pred             CCCceeccCCCCCEEEC-CCCCeEEecccCccccCCC--CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCC
Q 015733           87 KERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~  162 (401)
                      . |++||||||+||+++ .++.+||+|||++......  ....|++.|+|||++.+..+ +.++||||||+++|+|++|+
T Consensus       158 ~-~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~  236 (312)
T 2iwi_A          158 R-GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGD  236 (312)
T ss_dssp             H-TEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSS
T ss_pred             C-CeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCC
Confidence            9 999999999999999 8899999999998876543  34568999999999987665 45899999999999999999


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV  224 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~  224 (401)
                      .||.......          ..  ...++..++..+.++|.+||+.||.+|||+.+++++-.
T Consensus       237 ~pf~~~~~~~----------~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~  286 (312)
T 2iwi_A          237 IPFERDQEIL----------EA--ELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPW  286 (312)
T ss_dssp             CSCCSHHHHH----------HT--CCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTT
T ss_pred             CCCCChHHHh----------hh--ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence            9986532110          00  12345667788999999999999999999999998543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.98  E-value=1.8e-33  Score=263.42  Aligned_cols=191  Identities=20%  Similarity=0.304  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHhhhCC--CeEEEeeeecc-----ccEeeecCC--cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           18 TYFIVSLVLIASMSS--FILLAVIFMFQ-----IPSYEFHCL--TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h--~niv~~~~~~~-----~~v~Ey~~~--~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..|.+|+.++.+++|  ||++.++..+.     ..||||+.+  ++...+. ....+++..++.++.||+.||.|||++ 
T Consensus        91 ~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~-~~~~l~~~~~~~i~~qi~~~L~~LH~~-  168 (320)
T 3a99_A           91 TRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFIT-ERGALQEELARSFFWQVLEAVRHCHNC-  168 (320)
T ss_dssp             CEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            568889999999975  99998885444     349999974  3444443 456799999999999999999999999 


Q ss_pred             CceeccCCCCCEEEC-CCCCeEEecccCccccCCC--CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCC
Q 015733           89 RALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        89 ~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||+||||||+|||++ .++.+||+|||+++.....  ....||+.|+|||++.+..+ +.++|||||||++|||+||..|
T Consensus       169 ~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~p  248 (320)
T 3a99_A          169 GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP  248 (320)
T ss_dssp             TEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCC
Confidence            999999999999999 7899999999999876543  34568999999999987665 6789999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |....... . .          ...++..++.++.+||.+||+.||.+|||+.+|++.
T Consensus       249 f~~~~~~~-~-~----------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          249 FEHDEEII-R-G----------QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             CCSHHHHH-H-C----------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCChhhhh-c-c----------cccccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            86542110 0 0          112344567789999999999999999999999874

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.98  E-value=1e-32  Score=277.72  Aligned_cols=203  Identities=16%  Similarity=0.188  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCc-ccccccC--CCCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLT-FSNNFSG--ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~-l~~~~~~--~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ..+.|.+|+.++.+++||||+.++....           .+||||++|+ +...+..  ....+++..++.++.|++.||
T Consensus        55 ~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL  134 (676)
T 3qa8_A           55 NRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSAL  134 (676)
T ss_dssp             HHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Confidence            3577999999999999999998874432           3599999865 4444433  234699999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCC---eEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVN---PRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~---~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      .|||+. ||+||||||+||+++.++.   +||+|||++......   ....||+.|+|||.+.+..++.++|||||||++
T Consensus       135 ~yLHs~-gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviL  213 (676)
T 3qa8_A          135 RYLHEN-RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLA  213 (676)
T ss_dssp             HHHHHT-TBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHH
T ss_pred             HHHHHC-CCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHH
Confidence            999999 9999999999999997765   899999999876543   345689999999999999999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhh------cccccccc----------c--cccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          156 LDLLSGKHIPPSHALDLIRD------RNIQTLTD----------S--CLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~------~~~~~~~~----------~--~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      |+|++|..||........-.      ........          .  .....++..++..+.++|.+||+.||.+|||+.
T Consensus       214 yeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~  293 (676)
T 3qa8_A          214 FECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP  293 (676)
T ss_dssp             HHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCT
T ss_pred             HHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHH
Confidence            99999999986532111000      00000000          0  011234566899999999999999999999997


Q ss_pred             HH
Q 015733          218 SL  219 (401)
Q Consensus       218 ~v  219 (401)
                      ++
T Consensus       294 el  295 (676)
T 3qa8_A          294 QN  295 (676)
T ss_dssp             TC
T ss_pred             HH
Confidence            74

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.98  E-value=6.8e-33  Score=258.78  Aligned_cols=200  Identities=16%  Similarity=0.178  Sum_probs=145.2

Q ss_pred             HHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcee
Q 015733           19 YFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS-KERALY   92 (401)
Q Consensus        19 ~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~-~~~ivH   92 (401)
                      .+..+..++..++||||+.++..+.     .+||||+.+.+..+.......+++..+..++.|++.||.|||+ . |++|
T Consensus        70 ~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-~i~H  148 (318)
T 2dyl_A           70 ILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH-GVIH  148 (318)
T ss_dssp             HHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_pred             HHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC-CEEe
Confidence            3444556788889999999884433     3499999655554444445779999999999999999999998 6 8999


Q ss_pred             ccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           93 HDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        93 ~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |||||+||+++.++.+||+|||++......   ....+++.|+|||++.     ...++.++|||||||++|+|++|..|
T Consensus       149 ~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p  228 (318)
T 2dyl_A          149 RDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFP  228 (318)
T ss_dssp             CCCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCC
Confidence            999999999999999999999998765433   2346899999999995     45688999999999999999999999


Q ss_pred             CCchhhHHhhhcccccccccc-ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSC-LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |........   ....+.... ........++.++.+||.+||+.||.+|||+.+++++
T Consensus       229 f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          229 YKNCKTDFE---VLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             TTTCCSHHH---HHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCCCCccHH---HHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            865221110   011111100 0001123467889999999999999999999999863

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=1e-32  Score=267.08  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=130.8

Q ss_pred             EeeecCCcccccc------cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCcccc
Q 015733           46 SYEFHCLTFSNNF------SGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNS  119 (401)
Q Consensus        46 v~Ey~~~~l~~~~------~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~  119 (401)
                      +|+++.+++..++      .....++++..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++..
T Consensus       183 ~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~  261 (413)
T 3dzo_A          183 LYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRD  261 (413)
T ss_dssp             EEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCCEEECCGGGCEET
T ss_pred             EeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcccceEEEecCCeEEEEeccceeec
Confidence            5666666666555      23456789999999999999999999999 9999999999999999999999999998875


Q ss_pred             CCC-CccccccccCCcccc----------ccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccC
Q 015733          120 RDG-RSYSTNLAFTPPEYL----------RTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEG  188 (401)
Q Consensus       120 ~~~-~~~~~~~~y~aPE~~----------~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  188 (401)
                      ... ....| +.|+|||++          .+..++.++|||||||++|||+||+.||......    .....+    +. 
T Consensus       262 ~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~----~~~~~~----~~-  331 (413)
T 3dzo_A          262 GASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAAL----GGSEWI----FR-  331 (413)
T ss_dssp             TEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGG----SCSGGG----GS-
T ss_pred             CCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchh----hhHHHH----Hh-
Confidence            543 34467 999999999          5556888999999999999999999998654211    111111    11 


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                       ....++..+.+||.+||+.||.+|||+.++++
T Consensus       332 -~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          332 -SCKNIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             -SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -hcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence             11245678999999999999999999877764

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.97  E-value=5.6e-31  Score=243.97  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHH-hhhCCCeEEEeeeecc---------ccEeeecCC-cccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLI-ASMSSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l-~~~~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+.+|+.++ ...+||||+.++..+.         .+||||++| ++...+... ...+++..++.++.|++.||.||
T Consensus        54 ~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  133 (299)
T 3m2w_A           54 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  133 (299)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46788899988 6669999998874332         349999986 555555433 45799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECC---CCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ |++||||||+||+++.   ++.+||+|||++....                  +..++.++|||||||++|||+||
T Consensus       134 H~~-~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~------------------~~~~~~~~DiwslG~il~el~tg  194 (299)
T 3m2w_A          134 HSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT------------------GEKYDKSCDMWSLGVIMYILLCG  194 (299)
T ss_dssp             HHT-TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT------------------TCGGGGHHHHHHHHHHHHHHHHS
T ss_pred             HhC-CcccCCCCHHHEEEecCCCCCcEEEeccccccccc------------------cccCCchhhHHHHHHHHHHHHHC
Confidence            999 9999999999999998   7889999999886532                  24578899999999999999999


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCC----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFS----SDEGTELVRLASRCLQYEPRERPNPRSLVTAL  223 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l  223 (401)
                      ..||...............+....  ..++    ..++.++.+||.+||+.||.+|||+.+++++-
T Consensus       195 ~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp  258 (299)
T 3m2w_A          195 YPPFYSNHGLAISPGMKTRIRMGQ--YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP  258 (299)
T ss_dssp             SCSCCC-------CCSCCSSCTTC--CSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             CCCCCCCcchhhhHHHHHHHhhcc--ccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence            999865432211111111111111  1122    34678899999999999999999999999743

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=4.2e-31  Score=243.25  Aligned_cols=186  Identities=12%  Similarity=0.046  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+..+.+++||||++++..+.     .+||||++|+.+..+... + .....+.+++.||+.||.|||++ ||+
T Consensus        75 ~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~-~-~~~~~~~~i~~ql~~aL~~lH~~-giv  151 (286)
T 3uqc_A           75 LQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADT-S-PSPVGAIRAMQSLAAAADAAHRA-GVA  151 (286)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTT-C-CCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            478999999999999999999884433     359999996544444433 2 35557889999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhH
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALD  171 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~  171 (401)
                      ||||||+|||++.++.+||+++|                |++       .++.++|||||||++|||+||+.||.+....
T Consensus       152 H~Dikp~NIll~~~g~~kl~~~~----------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~  208 (286)
T 3uqc_A          152 LSIDHPSRVRVSIDGDVVLAYPA----------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVR  208 (286)
T ss_dssp             CCCCSGGGEEEETTSCEEECSCC----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBC
T ss_pred             cCCCCcccEEEcCCCCEEEEecc----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcc
Confidence            99999999999999999998554                333       3688999999999999999999998754211


Q ss_pred             Hhhhccccccccccc--cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccCC
Q 015733          172 LIRDRNIQTLTDSCL--EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDT  230 (401)
Q Consensus       172 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~~  230 (401)
                      ..... .........  ....+..++.++.+||.+||+.||.+| |+.++++.|..+....
T Consensus       209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~  267 (286)
T 3uqc_A          209 SGLAP-AERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA  267 (286)
T ss_dssp             CCSEE-CCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred             hhhHH-HHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence            00000 000000000  011234567889999999999999999 9999999999887543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.96  E-value=1e-30  Score=246.30  Aligned_cols=193  Identities=9%  Similarity=0.037  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHhhhC---------CCeEEEeeee---------------------------------cc--ccEeeecCCc
Q 015733           18 TYFIVSLVLIASMS---------SFILLAVIFM---------------------------------FQ--IPSYEFHCLT   53 (401)
Q Consensus        18 ~~f~~E~~~l~~~~---------h~niv~~~~~---------------------------------~~--~~v~Ey~~~~   53 (401)
                      +.+.+|+.+++.++         |||++++...                                 ..  .+||||++++
T Consensus        68 ~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g  147 (336)
T 2vuw_A           68 EEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGG  147 (336)
T ss_dssp             HHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCC
Confidence            78899999999886         6666655421                                 11  3499999865


Q ss_pred             -ccccccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCceeccCCCCCEEECCCC--------------------CeEEe
Q 015733           54 -FSNNFSGETQPMKWAMRLRVALHIAEALEYCT-SKERALYHDLNAYRIVFDDDV--------------------NPRLS  111 (401)
Q Consensus        54 -l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH-~~~~ivH~dlk~~Nill~~~~--------------------~~kl~  111 (401)
                       ++..+..  ..+++..++.++.||+.||.||| ++ ||+||||||+|||++.++                    .+||+
T Consensus       148 ~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~-~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  224 (336)
T 2vuw_A          148 IDLEQMRT--KLSSLATAKSILHQLTASLAVAEASL-RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSII  224 (336)
T ss_dssp             EETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHHHH-CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEEC
T ss_pred             ccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhC-CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEe
Confidence             6666643  56899999999999999999999 89 999999999999999887                    89999


Q ss_pred             cccCccccCCCCccccccccCCccccccCccCCCCcchhhHHH-HHHHHhCCCCCCchhhHH-hhhccccc-cccccccC
Q 015733          112 CFGLMKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL-LLDLLSGKHIPPSHALDL-IRDRNIQT-LTDSCLEG  188 (401)
Q Consensus       112 Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~-l~el~tg~~p~~~~~~~~-~~~~~~~~-~~~~~~~~  188 (401)
                      |||+++..... ...||+.|+|||++.+.. +.++||||+|++ .+++++|..||....+.. ........ ........
T Consensus       225 DFG~a~~~~~~-~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (336)
T 2vuw_A          225 DYTLSRLERDG-IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNT  302 (336)
T ss_dssp             CCTTCBEEETT-EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCS
T ss_pred             eccccEecCCC-cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccch
Confidence            99999876543 457899999999998665 889999998777 777888988865421100 10011101 01111111


Q ss_pred             CCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          189 QFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       189 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      ..+..++.++.+||.+||+.|     |+.+++
T Consensus       303 ~~~~~~s~~~~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          303 PAMKQIKRKIQEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred             hhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence            224568899999999999976     899888

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=8.9e-29  Score=248.00  Aligned_cols=143  Identities=10%  Similarity=0.043  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.+|.++ +|+||++++..++     .+||||++|+.+..+....++++..   +|+.||+.||+|+|++ |
T Consensus       284 ~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~ylH~~-G  359 (569)
T 4azs_A          284 NKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLAALEKQ-G  359 (569)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHC-C
Confidence            457899999999999 7999999884444     4499999987666666667788865   4789999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ||||||||+|||++.+|.+||+|||+++.....    .+.+||+.|+|||++.+ .+..++|+||+|++++++.++..
T Consensus       360 IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          360 FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             CEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTHH
T ss_pred             ceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccc
Confidence            999999999999999999999999999876543    23568999999999874 56778999999999888766543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=6.2e-21  Score=152.99  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=103.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .++.+..++++|+.+++.|+|++|++.|++||+++|. ++.+|+++|.+|..+|++++|+.++++|++++|+++.+|+++
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4677889999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|++|++++|++.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999999865

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.83  E-value=9.2e-22  Score=196.04  Aligned_cols=138  Identities=12%  Similarity=0.064  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEE--Eeeeecc---ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILL--AVIFMFQ---IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv--~~~~~~~---~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++||||+  .++....   .+||||++|+.+..+...        +..++.|++.||.|||++ ||
T Consensus       382 ~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~--------~~~i~~qi~~aL~~LH~~-gI  452 (540)
T 3en9_A          382 RKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED--------NLDIAYKIGEIVGKLHKN-DV  452 (540)
T ss_dssp             HHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT--------CTHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHC-cC
Confidence            356799999999999999999  5543322   459999996544444433        568999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----------CccccccccCCcccccc--CccCCCCcchhhHHHHHH
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRT--GRVTPESVMYSFGTLLLD  157 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~~l~e  157 (401)
                      +||||||+|||++.  .+||+|||+++.....           .+..||+.|+|||++..  ..|+..+|+||..+-..+
T Consensus       453 iHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~  530 (540)
T 3en9_A          453 IHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMK  530 (540)
T ss_dssp             ECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             ccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999998  9999999999987653           24568999999999987  568888999999999888


Q ss_pred             HHhCCCC
Q 015733          158 LLSGKHI  164 (401)
Q Consensus       158 l~tg~~p  164 (401)
                      -+.++.+
T Consensus       531 ~v~~r~r  537 (540)
T 3en9_A          531 DVERRAR  537 (540)
T ss_dssp             HHHTCSC
T ss_pred             HHHhccc
Confidence            8877654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.82  E-value=1.1e-19  Score=149.30  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=100.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC------C-----HHHHHhHHHHHHhCCChHHHHHHHHHhHhh-
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV------S-----PTAFARRSLSYLMSDMPQEALNDASQAQVI-  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  359 (401)
                      ...+..++..|+.+++.|+|++|++.|++||+++|+.      +     +.+|+|+|.++.++|+|++|+.+|++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            4578889999999999999999999999999999982      1     339999999999999999999999999999 


Q ss_pred             ------CCCChHHH----HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          360 ------SPVWHMAA----YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       360 ------~p~~~~~~----~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                            +|+++++|    +++|.++..+|++++|+++|++|++++|.+-
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence                  99999999    9999999999999999999999999999754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1.3e-18  Score=143.80  Aligned_cols=108  Identities=6%  Similarity=-0.076  Sum_probs=103.7

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ...+.....+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+..|++|++++|+++.+|+
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            446778889999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          369 LQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ++|.+|..+|++++|++.|++|++++|..
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999999754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.77  E-value=1.7e-18  Score=138.86  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=98.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh-------
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH-------  364 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------  364 (401)
                      .+.+..+++.|+.+++.|+|++|++.|++||+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|++.       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            456778899999999999999999999999999999 999999999999999999999999999999998874       


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          365 MAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       365 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .+|+++|.++..+|++++|++.|+++++.+|+
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            58999999999999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=9.6e-18  Score=133.71  Aligned_cols=101  Identities=19%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+.+++++++++|+++.+++.+|.
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45678999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccc
Q 015733          373 ALFALGKENEAQAALREASILE  394 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      ++..+|++++|++.|+++++++
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.75  E-value=5e-18  Score=141.76  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=101.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc------------------CCCCCHHHHHhHHHHHHhCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDV------------------GTMVSPTAFARRSLSYLMSDMPQEALND  352 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------------------~p~~~~~~~~~~a~~~~~~~~~~~A~~~  352 (401)
                      ..+.+..++..|+.+++.|+|++|+..|++||++                  +|. ...+|+++|.||.++|+|++|+.+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4567889999999999999999999999999999                  677 778999999999999999999999


Q ss_pred             HHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          353 ASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       353 ~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +++|++++|+++.+|+++|.+|..+|++++|+.+|++|++++|.+.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            9999999999999999999999999999999999999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=5.9e-17  Score=133.43  Aligned_cols=107  Identities=11%  Similarity=0.041  Sum_probs=102.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+++.|+|++|+..|+++++++|. ++.+|+++|.++..+|+|++|+..|++|++++|+++.+++++
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4667788999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|+++++++|.+.
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            9999999999999999999999988643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=3.5e-17  Score=135.11  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..++....++..|..+++.|+|++|++.|+++|+++|+ ++.+|+++|.+|..+|++++|+..|++|++++|+++.++++
T Consensus        26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  104 (150)
T 4ga2_A           26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK  104 (150)
T ss_dssp             SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35566778889999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHH-HHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAA-LREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~-~~~al~l~~~~~  398 (401)
                      +|.+|..+|++++|.+. +++|++++|++.
T Consensus       105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A          105 IAELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            99999999999988876 599999999764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.72  E-value=7.3e-17  Score=134.91  Aligned_cols=107  Identities=23%  Similarity=0.330  Sum_probs=102.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....+..+...|..+++.|+|++|++.|+++++++|+ +..+|+++|.+|..+|+|++|+.+++++++++|+++.+|+++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3466788999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|+++++++|.+.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            9999999999999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.71  E-value=1.3e-16  Score=130.25  Aligned_cols=107  Identities=10%  Similarity=0.071  Sum_probs=102.2

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+++.|+|++|+..|.++++.+|+ ++.+|+++|.+|..+|+|++|+..|++|++++|+++.+++.+
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4567778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|+++++++|.+.
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999998543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.70  E-value=8.5e-17  Score=127.69  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=94.4

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...++..|..+++.|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+..+++|++++|+++.+++.+|.+|
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            346788999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhhh
Q 015733          375 FALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+|++++|+..|+++++++|...
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999999999998754

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.69  E-value=1.2e-17  Score=152.84  Aligned_cols=118  Identities=12%  Similarity=-0.056  Sum_probs=91.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeee-eccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceec
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIF-MFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH   93 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~-~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~   93 (401)
                      .....|.+|+.++.+++|+++..++. ....+||||++|+.+..+..       .....++.|++.||.|||+. ||+||
T Consensus       146 ~~~~~~~~E~~~l~~l~~~~v~~~~~~~~~~lvmE~~~g~~L~~l~~-------~~~~~i~~qi~~~l~~lH~~-giiHr  217 (282)
T 1zar_A          146 LAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRV-------ENPDEVLDMILEEVAKFYHR-GIVHG  217 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEECCCCEEGGGCCC-------SCHHHHHHHHHHHHHHHHHT-TEECS
T ss_pred             HHHHHHHHHHHHHHhccCCCcCeEEeccceEEEEEecCCCcHHHcch-------hhHHHHHHHHHHHHHHHHHC-CCEeC
Confidence            35678999999999998777776552 22356999999754443321       23457999999999999999 99999


Q ss_pred             cCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCcccccc----------CccCCCCcchh
Q 015733           94 DLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT----------GRVTPESVMYS  150 (401)
Q Consensus        94 dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~----------~~~~~~~Dv~s  150 (401)
                      ||||+|||++ ++.+||+|||+++.         +..++|||++..          .+++..+|+|.
T Consensus       218 Dlkp~NILl~-~~~vkl~DFG~a~~---------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          218 DLSQYNVLVS-EEGIWIIDFPQSVE---------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             CCSTTSEEEE-TTEEEECCCTTCEE---------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             CCCHHHEEEE-CCcEEEEECCCCeE---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            9999999999 99999999999864         345788998763          24555666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.66  E-value=1.1e-15  Score=123.22  Aligned_cols=103  Identities=21%  Similarity=0.351  Sum_probs=99.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..++..|+|++|+..|.++++.+|+ +..+|+++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            45677899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchh
Q 015733          373 ALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ++..+|++++|+..|+++++++|.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999999987

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=1e-15  Score=133.39  Aligned_cols=103  Identities=14%  Similarity=0.025  Sum_probs=95.1

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHh----------------HHHHHHhCCChHHHHHHHHHhHh
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFAR----------------RSLSYLMSDMPQEALNDASQAQV  358 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~  358 (401)
                      +..+..+|..+++.|+|++|+..|+++++++|+ ++.+|+.                +|.+|..+|++++|+..|+++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            556788899999999999999999999999999 8889998                99999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          359 ISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       359 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++|+++.+++.+|.+|..+|++++|++.|+++++++|++.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=4.1e-16  Score=127.68  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=85.5

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCCh----------HHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          307 RHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMP----------QEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      +.++|++|++.|+++++++|+ ++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            556899999999999999999 999999999999999876          599999999999999999999999999999


Q ss_pred             cC-----------ChHHHHHHHHHHHccchhhh
Q 015733          377 LG-----------KENEAQAALREASILENKKS  398 (401)
Q Consensus       377 ~~-----------~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|           ++++|+++|++|++++|++.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            85           89999999999999999753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=2.9e-15  Score=153.71  Aligned_cols=109  Identities=17%  Similarity=0.083  Sum_probs=99.1

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ...+..+..+.+.|..+.+.|++++|++.|++||+++|+ ++.+|+++|.+|..+|++++|++.|++|++++|+++.+|+
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~  115 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS  115 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            345667888899999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++|.+|..+|++++|++.|++|++++|++.
T Consensus       116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A          116 NLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=8.8e-15  Score=113.74  Aligned_cols=104  Identities=23%  Similarity=0.332  Sum_probs=99.7

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..++..|++++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4667889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|++++|++.|+++++++|.+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999998653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=7.9e-15  Score=116.84  Aligned_cols=106  Identities=23%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      ......+...|..+++.|+|++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            456777899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++..+|++++|++.|+++++++|.+.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            999999999999999999999998653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.61  E-value=6e-15  Score=127.17  Aligned_cols=107  Identities=20%  Similarity=0.214  Sum_probs=101.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH----------------HHHHhHHHHHHhCCChHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP----------------TAFARRSLSYLMSDMPQEALNDAS  354 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~  354 (401)
                      ....+..+...|..++..|+|++|++.|.+++++.|. ++                .+++++|.+|..+|+|++|+.+++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4567888999999999999999999999999999998 65                899999999999999999999999


Q ss_pred             HhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          355 QAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       355 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++++++|+++.+++++|.+|..+|++++|++.|+++++++|.+.
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  156 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  156 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            99999999999999999999999999999999999999998653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=5.7e-15  Score=138.55  Aligned_cols=107  Identities=12%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---------------HHHHHhHHHHHHhCCChHHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---------------PTAFARRSLSYLMSDMPQEALNDASQ  355 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  355 (401)
                      .+..+..+...|..+++.|+|++|+..|++|++++|. +               ..+|+++|.+|.++|+|++|+.+|++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4567888999999999999999999999999999999 6               68999999999999999999999999


Q ss_pred             hHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          356 AQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       356 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |++++|+++.+++++|.+|..+|++++|+++|++|++++|.+.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            9999999999999999999999999999999999999998754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=5.5e-16  Score=127.85  Aligned_cols=97  Identities=9%  Similarity=-0.095  Sum_probs=90.6

Q ss_pred             hHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCCh
Q 015733          301 KGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKE  380 (401)
Q Consensus       301 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~  380 (401)
                      .|..+..+|++++|++.|.+++..+|+ ++..++++|.+|+++|+|++|++.+++|++++|+++.+|+.+|.+|..+|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            577888999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhhh
Q 015733          381 NEAQAALREASILENKKS  398 (401)
Q Consensus       381 ~~A~~~~~~al~l~~~~~  398 (401)
                      ++|+..|++|++++|++.
T Consensus        82 ~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999999999764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=5.6e-15  Score=151.63  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +..+..+.+.|..+.+.|++++|++.|++||+++|+ ++.+|+++|.+|.++|++++|++.|++|++++|+++.+|+++|
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            455666777777777777777777777777777777 7777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhh
Q 015733          372 AALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+|..+|++++|++.|++|++++|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77777777777777777777777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=5.7e-15  Score=144.43  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=99.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---------------HHHHHhHHHHHHhCCChHHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---------------PTAFARRSLSYLMSDMPQEALNDASQ  355 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  355 (401)
                      .+..+..++.+|..+++.|+|++|+..|++||+++|. +               ..+|+|+|.||+++|+|++|+.+|++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4567888999999999999999999999999999999 6               68999999999999999999999999


Q ss_pred             hHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          356 AQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       356 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |++++|+++.+|+++|.+|..+|+|++|+.+|++|++++|.+.
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.59  E-value=6.4e-15  Score=134.60  Aligned_cols=103  Identities=21%  Similarity=0.356  Sum_probs=99.5

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+++.|+|++|+..|++|++.+|+ ++.+|+++|.+|..+|++++|+.++++|++++|++..+++++|.+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhh
Q 015733          374 LFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |..+|++++|+..|+++++++|.+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999865

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=1.2e-14  Score=123.30  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....+...|..+...++++.|++.+.++++++|. +..++..+|.+|..+|++++|++.++++++++|+++.+++++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence            34556778899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|..+|++++|++.|++|++++|++.
T Consensus       150 ~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            99999999999999999999999764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.59  E-value=1.2e-14  Score=111.98  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=98.4

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC--ChHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV--WHMAAYLQA  371 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g  371 (401)
                      .+..+...|..++..|++++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+  +..+++.+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            4556788999999999999999999999999999 9999999999999999999999999999999999  999999999


Q ss_pred             HHHHHc-CChHHHHHHHHHHHccchhh
Q 015733          372 AALFAL-GKENEAQAALREASILENKK  397 (401)
Q Consensus       372 ~~~~~~-~~~~~A~~~~~~al~l~~~~  397 (401)
                      .++..+ |++++|++.|+++++.+|..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999 99999999999999998864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=117.98  Aligned_cols=105  Identities=23%  Similarity=0.250  Sum_probs=99.7

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+..+...|..++..|+|++|++.|+++++.+|+ +   ..+++++|.+|..+|+|++|+..++++++++|+++.+++.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            45677889999999999999999999999999998 7   8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++..+|++++|+..|+++++++|.+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            99999999999999999999999998653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=7e-15  Score=128.95  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=99.8

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..+++.|++++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34556888999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CChHHHHHHHHHHHccchhhh
Q 015733          373 ALFAL-----------GKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~-----------~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++..+           |++++|+..|+++++++|.+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            99999           999999999999999999754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=1.9e-14  Score=114.44  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=96.3

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH---HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---hHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP---TAFARRSLSYLMSDMPQEALNDASQAQVISPVW---HMAAYL  369 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  369 (401)
                      ..+...|..+++.|+|++|+..|+++++.+|+ +.   .+++++|.++..+|+|++|+..++++++.+|++   +.+++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            35678899999999999999999999999999 77   799999999999999999999999999999999   899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++..+|++++|+..|+++++.+|++.
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            99999999999999999999999988643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=3e-14  Score=118.14  Aligned_cols=107  Identities=24%  Similarity=0.348  Sum_probs=100.9

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....+..+...|..++..|+|++|+..|.++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3456788999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.++..+|++++|++.|+++++++|.+.
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999988653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.57  E-value=5.1e-14  Score=111.40  Aligned_cols=106  Identities=24%  Similarity=0.301  Sum_probs=101.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+..+..+...|..++..|++++|+..|+++++.+|+ +..++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            4566778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          371 AAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |.++..+|++++|+..|+++++++|.+
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=2.6e-14  Score=125.75  Aligned_cols=104  Identities=15%  Similarity=0.086  Sum_probs=99.2

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCC-CCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGT-MVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ++..++..|..++..|+|++|++.|+++++++| . +..+++++|.++..+|++++|+..+++|++++|++..+++.+|.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            347789999999999999999999999999998 6 88999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|..+|++++|++.|+++++++|++.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            99999999999999999999998754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.55  E-value=1.1e-14  Score=136.75  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=97.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH-----------------HHHHhHHHHHHhCCChHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP-----------------TAFARRSLSYLMSDMPQEALNDA  353 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~  353 (401)
                      ....+..++..|..+++.|+|++|+..|.+|+++.|+ +.                 .+|+++|.+|.++|+|++|+.+|
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5667888999999999999999999999999999998 66                 39999999999999999999999


Q ss_pred             HHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          354 SQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       354 ~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++|++++|++..+|+++|.+|..+|+|++|+++|++|++++|.+.
T Consensus       254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999999999999999999999998754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=9.1e-15  Score=139.33  Aligned_cols=109  Identities=6%  Similarity=-0.089  Sum_probs=88.8

Q ss_pred             cchhhhhhhhhHhHhHHhhcCC-hHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKD-FRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      ...+.....+..+|..+...|+ +++|+..|++||+++|+ ++.+|+++|.++..+|++++|+.+|++||+++|++..+|
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            3355567778888888888886 88888888888888888 888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +++|.++..+|++++|+++|+++++++|.+.
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            8888888888888888888888888887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=3.8e-15  Score=117.15  Aligned_cols=91  Identities=11%  Similarity=0.047  Sum_probs=82.6

Q ss_pred             hcCChHHHHHHHHHHHhc---CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHH
Q 015733          307 RHKDFRASIECYTQFIDV---GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEA  383 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  383 (401)
                      ..|++++|+..|++++++   +|+ +..+++++|.+|..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            468999999999999999   688 8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccchhhh
Q 015733          384 QAALREASILENKKS  398 (401)
Q Consensus       384 ~~~~~~al~l~~~~~  398 (401)
                      ++.|+++++++|.+.
T Consensus        81 ~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           81 VELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHhCCCcH
Confidence            999999999987643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=1.8e-14  Score=137.24  Aligned_cols=107  Identities=9%  Similarity=-0.068  Sum_probs=102.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCC-hHHHHHHHHHhHhhCCCChHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM-PQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      .+..+..+...|..+.+.|++++|++.|+++|+++|+ +..+|+++|.++..+|+ +++|+.++++|++++|++..+|++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            4556778899999999999999999999999999999 99999999999999997 999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++..+|++++|+..|++|++++|++.
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence            99999999999999999999999999764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.55  E-value=1.5e-14  Score=137.44  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHh----------------cCCCCCHHHHHhHHHHHHhCCChHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFID----------------VGTMVSPTAFARRSLSYLMSDMPQEALNDAS  354 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----------------~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~  354 (401)
                      ....+..+...|..+++.|+|++|++.|++|++                ++|. +..+|+++|.+|+++|+|++|+.+++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~  297 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            445677899999999999999999999999999                7787 88999999999999999999999999


Q ss_pred             HhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          355 QAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       355 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|++++|+++.+++++|.+|..+|++++|++.|++|++++|.+.
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~  341 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  341 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999999999999999998653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.55  E-value=3.1e-14  Score=123.92  Aligned_cols=96  Identities=6%  Similarity=0.041  Sum_probs=90.1

Q ss_pred             hHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHc---
Q 015733          301 KGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFAL---  377 (401)
Q Consensus       301 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---  377 (401)
                      .|..+++.|+|++|+..|+++++++|+ +..+++++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|+..   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999888877543   


Q ss_pred             --------------------------------CChHHHHHHHHHHHccchhh
Q 015733          378 --------------------------------GKENEAQAALREASILENKK  397 (401)
Q Consensus       378 --------------------------------~~~~~A~~~~~~al~l~~~~  397 (401)
                                                      |+|++|+..|++|++++|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                            46899999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=3.2e-14  Score=124.72  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC-----------CChHHHHHHHHHhHhhCC
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS-----------DMPQEALNDASQAQVISP  361 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p  361 (401)
                      .....+...|..+.+.|++++|+..|+++++++|+ +..+++++|.++..+           |++++|+..+++|++++|
T Consensus        37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P  115 (217)
T 2pl2_A           37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP  115 (217)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence            33444445555555555555555555555555555 555555555555555           555555555555555555


Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          362 VWHMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       362 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      +++.+++.+|.++..+|++++|++.|++|++++
T Consensus       116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          116 RYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            555555555555555555555555555555444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.52  E-value=6.3e-14  Score=110.97  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-------hH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-------HM  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  365 (401)
                      +.+..+...|..++..|+|++|+..|.++++.+|. +..+++++|.++...|++++|+..+++++++.|++       ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34667889999999999999999999999999999 99999999999999999999999999999999988       99


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +++.+|.++..+|++++|++.|+++++++|+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=1.8e-13  Score=115.98  Aligned_cols=107  Identities=18%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+++.|++++|+..+.+++..+|+ ...++.++|.++...++++.|+..+.++++++|++..+++.+
T Consensus        35 ~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           35 DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            3445555666666666666666666666666666666 666666666666666666777777777777777778888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|+++++++|.+.
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence            8888888888888888888888877643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=4.8e-14  Score=138.51  Aligned_cols=106  Identities=25%  Similarity=0.352  Sum_probs=101.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .+.+..+...|..+++.|+|++|++.|++|++++|+ ++.+|+++|.+|..+|+|++|++++++|++++|+++.+++++|
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456777889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|..+|++++|++.|++|++++|.+.
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999998653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.50  E-value=4e-13  Score=105.20  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=98.3

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+...|..++..|++++|++.|.++++.+|. +..+++++|.++...|++++|+..++++++++|+++.+++.+|.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            556788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhhh
Q 015733          375 FALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+|++++|+..|+++++++|.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999999988653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=1.9e-13  Score=115.20  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=100.6

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHH-HHhCCCh--HHHHHHHHHhHhhCCCChHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLS-YLMSDMP--QEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      +.....+...|..++..|+|++|+..|.++++++|+ +..++.++|.+ +...|++  ++|+..++++++++|+++.+++
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  119 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM  119 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence            445677899999999999999999999999999999 99999999999 8899999  9999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|.++..+|++++|+..|+++++++|.+.
T Consensus       120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          120 LLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            999999999999999999999999998753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.7e-14  Score=111.50  Aligned_cols=95  Identities=17%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC------hHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW------HMAA  367 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  367 (401)
                      .+..+...|..++..|+|++|++.|+++++++|+ ++.+++++|.++..+|+|++|+..++++++++|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            4567889999999999999999999999999999 99999999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHH
Q 015733          368 YLQAAALFALGKENEAQAALRE  389 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~  389 (401)
                      +++|.++..+|++++|++.|++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            9999999999999998877664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=3.1e-13  Score=117.21  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=97.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh---------
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH---------  364 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------  364 (401)
                      ....+...|..++..|+|++|++.|+++++++|+ +..+++++|.+|..+|++++|+..+++++++.|++.         
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  114 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  114 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence            3457889999999999999999999999999999 999999999999999999999999999999988877         


Q ss_pred             -------HHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          365 -------MAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       365 -------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                             .+++++|.++..+|++++|++.|+++++++|..
T Consensus       115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                   999999999999999999999999999999854

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=2.4e-13  Score=119.51  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=97.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh-------H
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH-------M  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~  365 (401)
                      .....+...|..++..|+|++|++.|+++++.+|+ +..+|.++|.+|..+|++++|+..++++++++|+++       .
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  118 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI  118 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            34456777999999999999999999999999999 999999999999999999999999999999999999       7


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +|+.+|.++..+|++++|++.|++|++++|.
T Consensus       119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            7999999999999999999999999999987

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=3.9e-13  Score=104.98  Aligned_cols=85  Identities=16%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015733          312 RASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREAS  391 (401)
Q Consensus       312 ~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  391 (401)
                      ++|++.|.++++.+|+ ++.+++++|.+|...|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|++++
T Consensus         2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4689999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhh
Q 015733          392 ILENKK  397 (401)
Q Consensus       392 ~l~~~~  397 (401)
                      +++|..
T Consensus        81 ~~~~~~   86 (115)
T 2kat_A           81 AAAQSR   86 (115)
T ss_dssp             HHHHHH
T ss_pred             Hhcccc
Confidence            998864

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.44  E-value=5.1e-14  Score=126.97  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhhCCCeE--EEee-eeccccEeeecCC-c-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCce
Q 015733           18 TYFIVSLVLIASMSSFIL--LAVI-FMFQIPSYEFHCL-T-FSNNFSGETQPMKWAMRLRVALHIAEALEYCT-SKERAL   91 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~ni--v~~~-~~~~~~v~Ey~~~-~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH-~~~~iv   91 (401)
                      ..+.+|+..+.++.|+++  ...+ .....+||||+++ + ....+.......++..+..++.|++.||.||| +. ||+
T Consensus       115 ~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-giv  193 (258)
T 1zth_A          115 IWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEA-ELV  193 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTS-CEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHC-CEE
Confidence            578899999999987753  2222 2233569999952 2 11111110011234567889999999999999 88 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSR  120 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~  120 (401)
                      ||||||.|||++.  .++|+|||++....
T Consensus       194 HrDlkp~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          194 HADLSEYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             CSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred             eCCCCHHHEEEcC--cEEEEECcccccCC
Confidence            9999999999998  89999999997653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.44  E-value=1.1e-12  Score=118.02  Aligned_cols=106  Identities=12%  Similarity=0.062  Sum_probs=101.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +..+..+...|..++..|++++|+..|+++++++|+ +..+|.++|.+|...|++++|+..++++++++|+++.+++.+|
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            456778899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|..+|++++|++.|+++++++|.+.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999998653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.5e-12  Score=115.60  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=99.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..++..|++++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            4456777889999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccc
Q 015733          371 AAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      |.++..+|++++|++.|+++++++
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.42  E-value=5.4e-14  Score=115.91  Aligned_cols=85  Identities=9%  Similarity=-0.173  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 015733          313 ASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASI  392 (401)
Q Consensus       313 ~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  392 (401)
                      .+-..|.++++++|+ +..+++++|.+++..|+|++|+..|+++++++|+++.+|+.+|.+|..+|+|++|++.|++|++
T Consensus        20 ~~~~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           20 NSGATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HTSCCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            344567888999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhh
Q 015733          393 LENKKS  398 (401)
Q Consensus       393 l~~~~~  398 (401)
                      ++|++.
T Consensus        99 l~P~~~  104 (151)
T 3gyz_A           99 LGKNDY  104 (151)
T ss_dssp             HSSSCC
T ss_pred             hCCCCc
Confidence            999754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=1.3e-12  Score=113.15  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=94.2

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .++..+...|..++..|+|++|++.|++++  +|  ++.+++++|.+|..+|++++|+..+++|++++|+++.+++++|.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            456678899999999999999999999996  33  57899999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhh
Q 015733          373 ALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|..+|++++|++.|++++++.|.+
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999988754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=1.3e-12  Score=117.52  Aligned_cols=105  Identities=11%  Similarity=0.058  Sum_probs=98.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---hH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPVW---HM  365 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~  365 (401)
                      ...+..++..|..+++.|+|++|+..|+++++.+|+ +   ..+++++|.+|+.+|+|++|+..++++++++|++   +.
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            345678899999999999999999999999999999 7   8899999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------cCChHHHHHHHHHHHccchhh
Q 015733          366 AAYLQAAALFA--------LGKENEAQAALREASILENKK  397 (401)
Q Consensus       366 ~~~~~g~~~~~--------~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +++.+|.++..        +|++++|+..|+++++.+|++
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            99999999999        999999999999999999865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=2.1e-12  Score=121.61  Aligned_cols=105  Identities=13%  Similarity=0.053  Sum_probs=100.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..+++.|+|++|++.|+++++.+|+ +..+|+++|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|..+|++++|++.|+++++++|...
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999998754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.38  E-value=5.4e-12  Score=99.84  Aligned_cols=102  Identities=20%  Similarity=0.242  Sum_probs=96.5

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ....+...|..+...|++++|+..|.++++..|. +..+++++|.++...|++++|++.++++++..|++..+++.+|.+
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3456777899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchh
Q 015733          374 LFALGKENEAQAALREASILENK  396 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +...|++++|+..|+++++++|.
T Consensus       113 ~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          113 YYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999998875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.37  E-value=4.5e-13  Score=137.44  Aligned_cols=106  Identities=12%  Similarity=-0.060  Sum_probs=100.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+..+|..+++.|+|++|++.|++|++++|+ ++.+|+++|.+|..+|+|++ ++.|++|++++|+++.+|+++
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l  540 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL  540 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence            3446678889999999999999999999999999999 99999999999999999999 999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|++|++++|.+.
T Consensus       541 g~~~~~~g~~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          541 ARARSAEGDRVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence            9999999999999999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.36  E-value=2.9e-12  Score=102.09  Aligned_cols=84  Identities=10%  Similarity=0.075  Sum_probs=79.6

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+.....+...|..+++.|++++|+..|+++|+++|+ +..+|+++|.+|..+|++++|+.+|++|++++|++..++..
T Consensus        42 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           42 RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            35567788999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 015733          370 QAAAL  374 (401)
Q Consensus       370 ~g~~~  374 (401)
                      +|.++
T Consensus       121 l~~~l  125 (126)
T 4gco_A          121 VRNCL  125 (126)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            99875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=7.5e-12  Score=98.99  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=95.4

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      .+...|..++..|++++|+..|.++++.+|. +..+++++|.++...|++++|+..++++++..|++..+++.+|.++..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            4677899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHccchhh
Q 015733          377 LGKENEAQAALREASILENKK  397 (401)
Q Consensus       377 ~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .|++++|++.|+++++.+|.+
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999988754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.36  E-value=4.6e-12  Score=118.03  Aligned_cols=101  Identities=15%  Similarity=0.193  Sum_probs=98.3

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ++..+...|..++..|+|++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccch
Q 015733          374 LFALGKENEAQAALREASILEN  395 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      +...|++++|++.|+++++++|
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHcCChHHHHHHHHHHHhcCC
Confidence            9999999999999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.36  E-value=1.2e-12  Score=99.16  Aligned_cols=92  Identities=12%  Similarity=0.049  Sum_probs=85.8

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHH-HHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT-AFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      ...+|..+++.|+|++|++.|+++++.+|+ +.. +++++|.+|..+|++++|+..++++++++|++..++++       
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            457899999999999999999999999999 999 99999999999999999999999999999999999865       


Q ss_pred             cCChHHHHHHHHHHHccchhhh
Q 015733          377 LGKENEAQAALREASILENKKS  398 (401)
Q Consensus       377 ~~~~~~A~~~~~~al~l~~~~~  398 (401)
                       +.+.+|+..|+++++++|.+.
T Consensus        75 -~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHCCS
T ss_pred             -HHHHHHHHHHHHHhccCcccc
Confidence             778899999999999988754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=3.9e-12  Score=119.79  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=98.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+...|++++|++.|+++++.+|+ ++.+|+++|.+|..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            4567888999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhh
Q 015733          374 LFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |..+|++++|++.|+++++++|+.
T Consensus       291 ~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999863

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.35  E-value=3.7e-12  Score=127.79  Aligned_cols=101  Identities=21%  Similarity=0.053  Sum_probs=54.5

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..+++.|+|++|++.|+++++++|+ +..+++++|.+|..+|++++|++.+++|++++|+++.+++++|.+|
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            334455555555555555555555555555555 5555555555555555555555555555555555555555555555


Q ss_pred             HHcCChHHHHHHHHHHHccchh
Q 015733          375 FALGKENEAQAALREASILENK  396 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ..+|++++|++.|+++++++|.
T Consensus       102 ~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A          102 EDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Confidence            5555555555555555555543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=8e-12  Score=104.81  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=99.2

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....+...|..++..|++++|++.|.++++.+|. +..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  152 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF  152 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            34556788899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++..+|++++|++.|+++++++|.+.
T Consensus       153 ~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          153 SYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999998654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.35  E-value=4.4e-13  Score=113.00  Aligned_cols=103  Identities=12%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH-
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA-  373 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-  373 (401)
                      ...+...+..+...|+|++|+..|.++++.+|. +..+|+.+|.+|...|++++|+..++++++++|+++.+++.+|.+ 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l   88 (177)
T 2e2e_A           10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL   88 (177)
T ss_dssp             CCCSSTTTCCCC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445556667788899999999999999999999 999999999999999999999999999999999999999999999 


Q ss_pred             HHHcCCh--HHHHHHHHHHHccchhhh
Q 015733          374 LFALGKE--NEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~--~~A~~~~~~al~l~~~~~  398 (401)
                      +...|++  ++|+..|+++++++|.+.
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~p~~~  115 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALDSNEI  115 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence            8899999  999999999999998653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=4.4e-12  Score=111.50  Aligned_cols=103  Identities=8%  Similarity=0.010  Sum_probs=94.6

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH---HHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM---AAY  368 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  368 (401)
                      +..+..+|..+++.|+|++|+..|+++++..|+ +   ..+++++|.+|+.+|+|++|+..++++++.+|+++.   +++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            456788999999999999999999999999997 4   469999999999999999999999999999999875   899


Q ss_pred             HHHHHHHH------------------cCChHHHHHHHHHHHccchhhh
Q 015733          369 LQAAALFA------------------LGKENEAQAALREASILENKKS  398 (401)
Q Consensus       369 ~~g~~~~~------------------~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|.++..                  .|++++|+..|+++++.+|+..
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99999987                  6799999999999999998753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=7e-12  Score=121.24  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=102.0

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+..+..+...|..+++.|+|++|+..|+++++.+|+ +..+++++|.+|..+|++++|+..++++++++|++..+++.
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            35667888999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.+|..+|++++|++.|+++++++|.+.
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999998643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=9.9e-12  Score=109.45  Aligned_cols=104  Identities=14%  Similarity=0.169  Sum_probs=78.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..++..|++++|++.|.++++.+|. +..++.++|.++..+|++++|++.++++++++|++..+++.+|
T Consensus        54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344556667777777777777777777777777777 7777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchh
Q 015733          372 AALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .++...|++++|++.|+++++++|.
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCc
Confidence            7777777777777777777777664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.34  E-value=6.8e-12  Score=114.76  Aligned_cols=104  Identities=11%  Similarity=0.011  Sum_probs=91.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHH------------------
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDAS------------------  354 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~------------------  354 (401)
                      .....+...|..+.+.|++++|+..|+++++.+|+ +..+++++|.++...|++++|+..++                  
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            34556788899999999999999999999999999 89999999999999999888765544                  


Q ss_pred             ----------------HhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          355 ----------------QAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       355 ----------------~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                                      ++++++|+++.+++.+|.+|...|++++|++.|+++++++|..
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                            4567799999999999999999999999999999999999876

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.34  E-value=3.9e-12  Score=107.34  Aligned_cols=107  Identities=13%  Similarity=-0.020  Sum_probs=77.8

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHH-HhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSY-LMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      ...+.....+...|..+.+.|++++|+..|+++++.+|  ++.++..++.+. ...++..+|+..++++++++|+++.++
T Consensus        34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence            33455666677777777777777777777777777766  234444444332 222334456777778888899999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +.+|.++...|++++|+..|+++++++|..
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999998753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.34  E-value=4.6e-12  Score=96.44  Aligned_cols=73  Identities=12%  Similarity=0.045  Sum_probs=65.2

Q ss_pred             cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          324 VGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       324 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+|+ ++.+++++|.+|..+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|++.|++++++++..
T Consensus         2 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPE-DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4688 899999999999999999999999999999999999999999999999999999999999999988754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.33  E-value=1e-12  Score=107.83  Aligned_cols=86  Identities=8%  Similarity=-0.038  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015733          312 RASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREAS  391 (401)
Q Consensus       312 ~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  391 (401)
                      ..+-..|.++++++|+ +..+++++|.+++..|+|++|+..++++++++|+++.+|+.+|.++..+|++++|++.|++|+
T Consensus         4 ~~~~~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            4 GSGGGTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             --CCCSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3444578899999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhh
Q 015733          392 ILENKKS  398 (401)
Q Consensus       392 ~l~~~~~  398 (401)
                      +++|.+.
T Consensus        83 ~l~p~~~   89 (148)
T 2vgx_A           83 VMDIXEP   89 (148)
T ss_dssp             HHSTTCT
T ss_pred             hcCCCCc
Confidence            9998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=8.5e-12  Score=122.49  Aligned_cols=103  Identities=21%  Similarity=0.264  Sum_probs=98.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .+.+..+..+|..+++.|+|++|+..|+++++.+|+  +.+|+++|.++..+|++++|+..++++++++|++..+++.+|
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            467888999999999999999999999999999985  889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchh
Q 015733          372 AALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .+|..+|++++|+..|+++++++|.
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.32  E-value=1.4e-11  Score=91.15  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+..+...|..++..|+|++|+..|.++++.+|+ +..+++++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567888999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 015733          373 ALFALG  378 (401)
Q Consensus       373 ~~~~~~  378 (401)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=1.8e-11  Score=102.64  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=98.8

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....+...|..++..|++++|+..|.++++.+|. +..++.++|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            34667888999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhh
Q 015733          373 ALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ++...|++++|++.|+++++.+|.+
T Consensus       119 ~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          119 ALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHcCcHHHHHHHHHHHHhcCccc
Confidence            9999999999999999999998754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=1.2e-11  Score=116.16  Aligned_cols=104  Identities=10%  Similarity=0.044  Sum_probs=99.4

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+++.|+|++|+..|+++++.+|+ +..+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3566788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|++++|++.|+++++++|...
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            9999999999999999999998654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=125.07  Aligned_cols=103  Identities=14%  Similarity=0.063  Sum_probs=98.7

Q ss_pred             hhhhhHhHhHHhhc---------CChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC--------CChHHHHHHHHHhH
Q 015733          295 TLNSKKKGDVAFRH---------KDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS--------DMPQEALNDASQAQ  357 (401)
Q Consensus       295 a~~~~~~g~~~~~~---------~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al  357 (401)
                      ...+...|..+...         |++++|++.|++|++++|+ +..+|+++|.+|..+        |++++|+..|++|+
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            47788899999999         9999999999999999999 999999999999999        99999999999999


Q ss_pred             hhCC---CChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          358 VISP---VWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       358 ~~~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +++|   +++.+|+++|.+|..+|++++|++.|++|++++|.+.
T Consensus       249 ~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999   9999999999999999999999999999999998754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=8.3e-12  Score=110.78  Aligned_cols=101  Identities=13%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-------hH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-------HM  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  365 (401)
                      ..+..+...|..++..|+|++|+..|+++++.+ . +..+++++|.++..+|++++|+..++++++++|++       +.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            467889999999999999999999999999999 7 89999999999999999999999999999999987       79


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      +++.+|.++..+|++++|++.|+++++++|
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  110 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR  110 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.31  E-value=1.2e-11  Score=116.14  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=99.2

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+...|++++|+..|+++++++|+ +..+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4667888999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhh
Q 015733          374 LFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |..+|++++|++.|+++++++|+.
T Consensus       295 ~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          295 CINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=3.6e-12  Score=125.10  Aligned_cols=105  Identities=11%  Similarity=-0.015  Sum_probs=100.1

Q ss_pred             hhhhhhhhHhHhHHhhcCCh-HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDF-RASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ...+..+..+|..++..|+| ++|++.|++|++++|+ +..+|+++|.+|..+|++++|++.|++|++++|+ ..+++.+
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            35677889999999999999 9999999999999999 9999999999999999999999999999999999 7999999


Q ss_pred             HHHHHHc---------CChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFAL---------GKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~---------~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+         |++++|++.|++|++++|.+.
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            9999999         999999999999999998753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.30  E-value=7.7e-12  Score=123.71  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=95.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....+..+...|..+++.|+|++|++.|+++++.+|+ ++.+|+++|.+|..+|++++|++.++++++++|+++.+++.+
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   99 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3457888999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          371 AAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |.++..+|++++|++.|+ ++.++|..
T Consensus       100 a~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999999999996 88887753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.30  E-value=1.3e-11  Score=108.71  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=98.8

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ....+...|..++..|++++|+..|.++++.+|+ +..++.++|.++...|++++|+..++++++.+|+++.+++.+|.+
T Consensus       124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  202 (243)
T 2q7f_A          124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT  202 (243)
T ss_dssp             SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4456788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|++++|++.|+++++++|.+.
T Consensus       203 ~~~~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          203 YAYKENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             HHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHccCHHHHHHHHHHHHccCcchH
Confidence            9999999999999999999998754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.29  E-value=1.7e-11  Score=110.15  Aligned_cols=102  Identities=10%  Similarity=0.037  Sum_probs=85.0

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+...|..+...|++++|++.|.++++.+|. +..++.++|.+|..+|++++|+..++++++++|+++.+++.+|...
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            344677888888888888888888888888888 8888888888888888888888888888888888888888888555


Q ss_pred             HHcCChHHHHHHHHHHHccchhh
Q 015733          375 FALGKENEAQAALREASILENKK  397 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +..+++++|++.|+++++++|.+
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCccc
Confidence            55568888888888888888764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=3.7e-11  Score=106.63  Aligned_cols=105  Identities=10%  Similarity=-0.009  Sum_probs=85.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHh--hCCCChHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV--ISPVWHMAAYL  369 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~  369 (401)
                      +.....+...|..++..|++++|++.|.++++.+|. +..++.++|.++...|++++|++.++++++  .+|++..+++.
T Consensus        68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            345666777888888888888888888888888888 788888888888888888888888888888  77888888888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|.++...|++++|++.|+++++++|.+
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            8888888888888888888888877653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=3.7e-11  Score=104.18  Aligned_cols=106  Identities=13%  Similarity=0.035  Sum_probs=89.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC-CChHHHHHHHHHhHh--hCCCChHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS-DMPQEALNDASQAQV--ISPVWHMAA  367 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~  367 (401)
                      .+.....+...|..+...|++++|++.|.++++.+|. +..++.++|.++... |++++|+..++++++  .+|++..++
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence            3445667778888888888888888888888888888 888888888888888 888888888888888  667778888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +.+|.++...|++++|++.|+++++.+|.+
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            888888888888888888888888887754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=1.5e-11  Score=110.47  Aligned_cols=103  Identities=13%  Similarity=0.077  Sum_probs=95.6

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC--CHHHHHhHHHHHHh--------CCChHHHHHHHHHhHhhCCCCh
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV--SPTAFARRSLSYLM--------SDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      ...+...|..+++.|+|++|+..|+++++..|+.  ...+++++|.++..        +|++++|+..++++++.+|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            6778999999999999999999999999998851  36789999999999        9999999999999999999998


Q ss_pred             HHH-----------------HHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          365 MAA-----------------YLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       365 ~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+.                 +.+|.+|..+|+|++|+..|+++++.+|+.
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            777                 899999999999999999999999998863

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=1.3e-11  Score=117.16  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=57.0

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      .+...|..+.+.|++++|++.|.++++.+|+ ...++.++|.++..+|++++|++.++++++.+|++..+++.+|.++..
T Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  181 (388)
T 1w3b_A          103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA  181 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555 555555555555555555555555555555555555556666666666


Q ss_pred             cCChHHHHHHHHHHHccchh
Q 015733          377 LGKENEAQAALREASILENK  396 (401)
Q Consensus       377 ~~~~~~A~~~~~~al~l~~~  396 (401)
                      .|++++|++.|+++++++|.
T Consensus       182 ~g~~~~A~~~~~~al~~~p~  201 (388)
T 1w3b_A          182 QGEIWLAIHHFEKAVTLDPN  201 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHhcCCC
Confidence            66666666666666655554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.28  E-value=1.1e-11  Score=111.38  Aligned_cols=109  Identities=6%  Similarity=-0.035  Sum_probs=95.4

Q ss_pred             chhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC--CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          290 GQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG--TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      ..+.....+...|..++..|+|++|++.|+++++..  +.....+|.++|.++..+|++++|+..++++++++|+++.++
T Consensus        32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence            344566688899999999999999999999999932  221244699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.+|.+|..+|++++|++.|+++++++|.+.
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            9999999999999999999999999987653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=3.1e-11  Score=107.13  Aligned_cols=102  Identities=15%  Similarity=0.026  Sum_probs=97.3

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..++..|++++|++.|+++++.+|. +..++..+|.++...|++++|++.++++++++|++..+++.+|.+
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            3677899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHc--cchh
Q 015733          374 LFALGKENEAQAALREASI--LENK  396 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~--l~~~  396 (401)
                      +...|++++|++.|+++++  .+|.
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcc
Confidence            9999999999999999998  5553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.28  E-value=1.8e-11  Score=114.55  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=93.8

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+++.|+|++|+..|++||+++|+ +..+|+++|.+|..+|+|++|+.++++|++++|++..+++.+|.+
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            4677889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHH-HHHHHHHHccc
Q 015733          374 LFALGKENEA-QAALREASILE  394 (401)
Q Consensus       374 ~~~~~~~~~A-~~~~~~al~l~  394 (401)
                      +..+|++++| ...|+++++.-
T Consensus       274 ~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999 55778777553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.27  E-value=2.7e-11  Score=115.07  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..+...|++++|+..|.++++++|+ +..+++++|.+|...|++++|+..++++++++|+++.+++.+|.++
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  281 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            344555566666666666666666666666666 6666666666666666666666666666666666666666666666


Q ss_pred             HHcCChHHHHHHHHHHHccchhh
Q 015733          375 FALGKENEAQAALREASILENKK  397 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ...|++++|++.|+++++++|.+
T Consensus       282 ~~~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          282 KEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCCHHHHHHHHHHHHhhCccc
Confidence            66666666666666666666543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.27  E-value=4.4e-11  Score=110.00  Aligned_cols=105  Identities=12%  Similarity=0.064  Sum_probs=100.1

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....+..+|..++..|++++|+..|+++++.+|+ +..++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            35667889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++...|++++|++.|+++++++|...
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            99999999999999999999988654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.26  E-value=1.8e-11  Score=97.53  Aligned_cols=70  Identities=14%  Similarity=-0.047  Sum_probs=66.7

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+.++.++|.++++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|++.|++|++++|+..
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            4678999999999999999999999999999999999999999999999999999999999999998653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.26  E-value=4.8e-11  Score=111.02  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHH----HHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT----AFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....|..+++.|++++|+..|+++++..|+ +..    ++..+|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  314 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4456699999999999999999999999999 764    57789999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchhhh
Q 015733          373 ALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++..+|++++|++.|+++++++|++.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=1.8e-11  Score=112.14  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=90.8

Q ss_pred             hhhhhhHhHhHHhhc-CChHHHHHHHHHHHhcCCCCC-----HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH--
Q 015733          294 ETLNSKKKGDVAFRH-KDFRASIECYTQFIDVGTMVS-----PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM--  365 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--  365 (401)
                      .+..+...|..+... |++++|++.|++|+++.|...     ..++.++|.+|..+|+|++|+..+++++++.|++..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            356788899999996 999999999999999987521     568999999999999999999999999999998754  


Q ss_pred             -----HHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          366 -----AAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       366 -----~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                           +++++|.++..+|++++|+..|+++++++|..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                 68999999999999999999999999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=2.6e-11  Score=111.10  Aligned_cols=93  Identities=10%  Similarity=-0.027  Sum_probs=87.0

Q ss_pred             HhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHH-H
Q 015733          305 AFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENE-A  383 (401)
Q Consensus       305 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~-A  383 (401)
                      +...|++++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.++..+|++++ |
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            34568999999999999999999 999999999999999999999999999999999999999999999999999987 5


Q ss_pred             HHHHHHHHccchhhh
Q 015733          384 QAALREASILENKKS  398 (401)
Q Consensus       384 ~~~~~~al~l~~~~~  398 (401)
                      .+.++++++++|.+.
T Consensus       255 ~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          255 NRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCCCh
Confidence            688899999999764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.26  E-value=3.7e-11  Score=120.54  Aligned_cols=107  Identities=11%  Similarity=-0.027  Sum_probs=101.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+...|++++|++.|+++++++|+ +..+++++|.+|..+|++++|++.++++++++|++..+++.+
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4455778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc---CChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFAL---GKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~---~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.++..+   |++++|++.|+++++.+|...
T Consensus       132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            9999999   999999999999999998653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.25  E-value=5.3e-11  Score=109.46  Aligned_cols=102  Identities=14%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ....+...|..+...|++++|++.|.++++.+|+ +..++.++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4567888899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchh
Q 015733          374 LFALGKENEAQAALREASILENK  396 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +..+|++++|++.|+++++++|.
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999987

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.25  E-value=4.2e-11  Score=98.89  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=93.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..++..|+|++|+..|.++++++|. +..+++++|.++..+|++++|+..++++++++|++..++..++
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345677889999999999999999999999999999 9999999999999999999999999999999999999985555


Q ss_pred             H--HHHHcCChHHHHHHHHHHHccch
Q 015733          372 A--ALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       372 ~--~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      .  .+...|++++|++.++++..+-+
T Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          123 ECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHHHhc
Confidence            4  48899999999999999876643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.24  E-value=7e-11  Score=102.40  Aligned_cols=106  Identities=8%  Similarity=-0.040  Sum_probs=98.0

Q ss_pred             hhhhhhhhhHhHhHHhhc-CChHHHHHHHHHHHh--cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          291 QMQETLNSKKKGDVAFRH-KDFRASIECYTQFID--VGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~--~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      .+.....+...|..++.. |++++|+..|+++++  .+|. ...+++++|.++...|++++|+..++++++.+|++..++
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  150 (225)
T 2vq2_A           72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF  150 (225)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence            344566788899999999 999999999999999  6666 788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccch-hh
Q 015733          368 YLQAAALFALGKENEAQAALREASILEN-KK  397 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~-~~  397 (401)
                      +.+|.++..+|++++|++.|+++++++| ..
T Consensus       151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  181 (225)
T 2vq2_A          151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQ  181 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999988 53

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.23  E-value=1.7e-10  Score=91.27  Aligned_cols=88  Identities=9%  Similarity=0.046  Sum_probs=83.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..++..|++++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|++..+++.+
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  124 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY  124 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            4455778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 015733          371 AAALFALGK  379 (401)
Q Consensus       371 g~~~~~~~~  379 (401)
                      |.++..+|+
T Consensus       125 ~~~~~~~~~  133 (133)
T 2lni_A          125 QRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999998775

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.23  E-value=2.7e-11  Score=111.60  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=95.7

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC---------CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG---------TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV  362 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  362 (401)
                      +.....+...|..+...|++++|+..|+++++..         |. ...++.++|.++..+|++++|+..++++++++|+
T Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            4456678888999999999999999999999886         55 6789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++.+++.+|.++..+|++++|++.|+++++++|.+.
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            999999999999999999999999999999998654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.23  E-value=2.5e-11  Score=111.12  Aligned_cols=105  Identities=8%  Similarity=-0.190  Sum_probs=94.1

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhC-CChHHHHHHHHHhHhhCCCC---
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMS-DMPQEALNDASQAQVISPVW---  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---  363 (401)
                      ..+..+.+.|..+.+.|+|++|+.+|++|+++.+..     .+.++.++|.+|... |++++|+..|++|+++.|+.   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            346788899999999999999999999999997651     156899999999995 99999999999999998865   


Q ss_pred             ---hHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          364 ---HMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       364 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                         ..++.++|.++..+|+|++|++.|+++++++|..
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence               5789999999999999999999999999998754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.22  E-value=9e-11  Score=105.27  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh--------
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH--------  364 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------  364 (401)
                      .....+...|..++..|++++|++.|.++++++|. +..+++++|.+|..+|++++|+..++++++++|++.        
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34566788899999999999999999999999999 899999999999999999999999999999999875        


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHHcCChHH
Q 015733          365 --------------------------------------------------------------MAAYLQAAALFALGKENE  382 (401)
Q Consensus       365 --------------------------------------------------------------~~~~~~g~~~~~~~~~~~  382 (401)
                                                                                    .+++.+|.++..+|++++
T Consensus       154 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  233 (275)
T 1xnf_A          154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS  233 (275)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence                                                                          566777778888888888


Q ss_pred             HHHHHHHHHccchhh
Q 015733          383 AQAALREASILENKK  397 (401)
Q Consensus       383 A~~~~~~al~l~~~~  397 (401)
                      |++.|+++++++|.+
T Consensus       234 A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          234 ATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHhCCchh
Confidence            888888888777753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.22  E-value=1.2e-11  Score=100.39  Aligned_cols=82  Identities=6%  Similarity=-0.059  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          316 ECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       316 ~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      ..|.++++++|+ +...++++|.+++..|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|
T Consensus         5 ~~l~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSED-TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            578889999999 9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhh
Q 015733          396 KKS  398 (401)
Q Consensus       396 ~~~  398 (401)
                      .+.
T Consensus        84 ~~~   86 (142)
T 2xcb_A           84 NEP   86 (142)
T ss_dssp             TCT
T ss_pred             CCc
Confidence            754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.22  E-value=7.4e-11  Score=108.63  Aligned_cols=105  Identities=13%  Similarity=-0.010  Sum_probs=84.1

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+...|++++|+..|.++++..|+ +..++.++|.+|...|++++|+..++++++++|+++.+++.+
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3445566777788888888888888888888888888 777788888888888888888888888888888888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchh
Q 015733          371 AAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      |.++...|++++|+..|++++++.+.
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            88888888888888888888877654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.20  E-value=5.6e-11  Score=104.39  Aligned_cols=102  Identities=13%  Similarity=0.059  Sum_probs=92.6

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH---HHHHhHHHHHHh------------------CCChHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP---TAFARRSLSYLM------------------SDMPQEALNDA  353 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~~~~~a~~~~~------------------~~~~~~A~~~~  353 (401)
                      ...+...|..+++.|+|++|+..|+++++.+|+ +.   .+++.+|.++..                  .|++++|+..+
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            457888999999999999999999999999998 65   389999999876                  68999999999


Q ss_pred             HHhHhhCCCChHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          354 SQAQVISPVWHMAA-----------------YLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       354 ~~al~~~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +++++.+|++..++                 +.+|.+|...|++++|+..|+++++..|+.
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence            99999999998765                 678999999999999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=1.2e-10  Score=112.37  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH----HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP----TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ....|..++..|++++|+..|+++++++|+ +.    .++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            455699999999999999999999999999 74    4899999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|++++|++.|+++++++|.+.
T Consensus       339 ~~~~~~~~~A~~~~~~al~~~p~~~  363 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQEHNENDQ  363 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCcchH
Confidence            9999999999999999999998753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.18  E-value=1.7e-11  Score=120.41  Aligned_cols=106  Identities=14%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+..+..+...|..+++.|+|++|++.|++|++++|+ ++.+|+++|.+|..+|++++|++.+++|++++|++..++..+
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHH--HHHcCChHHHHHHHH-----------HHHccchhh
Q 015733          371 AAA--LFALGKENEAQAALR-----------EASILENKK  397 (401)
Q Consensus       371 g~~--~~~~~~~~~A~~~~~-----------~al~l~~~~  397 (401)
                      |.+  +...|++++|++.++           ++++++|..
T Consensus       115 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          115 QECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999  889999999999999           787777653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.17  E-value=1.7e-10  Score=105.60  Aligned_cols=105  Identities=11%  Similarity=-0.032  Sum_probs=91.3

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHH--HHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRS--LSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .....+...|..+.+.|++++|++.|+++++.+|+ +.......+  ..+...|++++|+..++++++.+|+++.+++.+
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44567788899999999999999999999999998 654333333  223355999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.++..+|++++|++.|++|++++|.+.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.16  E-value=7.1e-10  Score=101.83  Aligned_cols=112  Identities=6%  Similarity=-0.081  Sum_probs=103.1

Q ss_pred             hhccchhhhhhhhhHhHhHHhhcC--ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHH----HhC---CChHHHHHHHHHh
Q 015733          286 QMWTGQMQETLNSKKKGDVAFRHK--DFRASIECYTQFIDVGTMVSPTAFARRSLSY----LMS---DMPQEALNDASQA  356 (401)
Q Consensus       286 ~~~t~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~a  356 (401)
                      ....-.++....|..+|..+...|  ++++|++.++++|..+|+ +..+|++|+.++    ..+   +++++++..++++
T Consensus        58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~  136 (306)
T 3dra_A           58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM  136 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred             HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence            334446677888999999999999  999999999999999999 999999999999    777   8999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHHccchhhh
Q 015733          357 QVISPVWHMAAYLQAAALFALGKEN--EAQAALREASILENKKS  398 (401)
Q Consensus       357 l~~~p~~~~~~~~~g~~~~~~~~~~--~A~~~~~~al~l~~~~~  398 (401)
                      ++.+|++..+|+.+|.++..+|+++  ++++.++++++.||++.
T Consensus       137 l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          137 LSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999  99999999999998753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.14  E-value=4.5e-11  Score=111.97  Aligned_cols=101  Identities=12%  Similarity=0.008  Sum_probs=59.6

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH-HH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA-LF  375 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~  375 (401)
                      .+...|..+++.|+|++|+..|+++|+++|+ +..+|+++|.+|..+|+|++|+.++++|++++|++..++..++.+ ..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999 999999999999999999999999999999999999999999998 45


Q ss_pred             HcCChHHHHHHHHHHHccchhhh
Q 015733          376 ALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+.+++|...|+++++.+|.+.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCC
Confidence            56788999999999999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.14  E-value=2.4e-10  Score=112.93  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=97.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..+...|++++|++.|+++++.+|+ +..++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  385 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA  385 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            445667888999999999999999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++...|++++|++.|+++++++|...
T Consensus       386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          386 EILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            999999999999999999999987643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=2.4e-10  Score=111.30  Aligned_cols=103  Identities=9%  Similarity=0.041  Sum_probs=69.9

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhc---------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC-----
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDV---------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVIS-----  360 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----  360 (401)
                      +..+...|..+...|+|++|++.|++|+++         +|. ....|.|+|.+|..+|++++|+.++++++++.     
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            334556677777777777777777777765         455 56677777777777777777777777777652     


Q ss_pred             ---CCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHccchhhh
Q 015733          361 ---PVWHMAAYLQAAALFALG--KENEAQAALREASILENKKS  398 (401)
Q Consensus       361 ---p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~  398 (401)
                         ++.+.++..+|.++...|  +|++|++.|++|++++|++.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence               345666777776665543  57777777777777776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=2e-10  Score=88.16  Aligned_cols=69  Identities=16%  Similarity=0.076  Sum_probs=66.6

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ++.+++++|.+++..|+|++|+..+++|++++|+++.+++++|.++..+|++++|++.|+++++++|.+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.12  E-value=2.5e-10  Score=89.15  Aligned_cols=86  Identities=6%  Similarity=-0.130  Sum_probs=76.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..++..|+|++|++.|+++++++|+ ++.+++++|.++..+|++++|+..++++++..|+++......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3567788999999999999999999999999999999 999999999999999999999999999999999999876544


Q ss_pred             HHHHHHc
Q 015733          371 AAALFAL  377 (401)
Q Consensus       371 g~~~~~~  377 (401)
                      ..+....
T Consensus       102 ~ai~~~~  108 (117)
T 3k9i_A          102 QAILFYA  108 (117)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            4433333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.12  E-value=1.8e-10  Score=103.36  Aligned_cols=104  Identities=10%  Similarity=0.029  Sum_probs=96.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc--------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV--------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  359 (401)
                      ...+..+...|..+...|++++|++.|.+++++        +|. ...++.++|.+|..+|++++|+..+++++++    
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            455677889999999999999999999999988        466 7789999999999999999999999999999    


Q ss_pred             ----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          360 ----SPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       360 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                          .|....+++.+|.++..+|++++|++.|++++++.+.
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                8888999999999999999999999999999998654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=4.7e-10  Score=94.35  Aligned_cols=85  Identities=13%  Similarity=-0.000  Sum_probs=78.8

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC--hHHHHHHHHHHHHcCChHHHH
Q 015733          307 RHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW--HMAAYLQAAALFALGKENEAQ  384 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~  384 (401)
                      +.++..+|+..|+++++.+|+ ++.+++++|.++...|++++|+..++++++++|++  ..+++.+|.++..+|++++|+
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            334556789999999999999 99999999999999999999999999999999987  569999999999999999999


Q ss_pred             HHHHHHHc
Q 015733          385 AALREASI  392 (401)
Q Consensus       385 ~~~~~al~  392 (401)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999984

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=2.2e-10  Score=111.75  Aligned_cols=91  Identities=12%  Similarity=0.152  Sum_probs=83.8

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+.++|..+++.|+|++|+..|++||+++|+ +..+|+++|.+|..+|+|++|+.+|++|++++|++..++..+|.++
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            577889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHH
Q 015733          375 FALGKENEAQAA  386 (401)
Q Consensus       375 ~~~~~~~~A~~~  386 (401)
                      ..++++++|...
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.11  E-value=3.8e-10  Score=88.65  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=83.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..++..|++++|++.|.++++.+|+ +..+++++|.++..+|++++|+..++++++++|++..+++.+|
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            344667888999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCh
Q 015733          372 AALFALGKE  380 (401)
Q Consensus       372 ~~~~~~~~~  380 (401)
                      .++..+|++
T Consensus       122 ~~~~~~~~~  130 (131)
T 2vyi_A          122 IAELKLREA  130 (131)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=2e-10  Score=98.60  Aligned_cols=98  Identities=9%  Similarity=0.053  Sum_probs=84.1

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..++..|+|++|+..|+++++++|+ +..+++++|.+|..+|+|++|+..++++++++|++..++..++.++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            456788999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHH-HHHHHHHcc
Q 015733          375 FALGKENEAQ-AALREASIL  393 (401)
Q Consensus       375 ~~~~~~~~A~-~~~~~al~l  393 (401)
                      ..+++++++. ..|.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            9999999988 555655544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=1.5e-10  Score=105.96  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=88.7

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhc------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC----
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDV------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW----  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  363 (401)
                      .+..+...|..+...|+|++|+..|.+|++.      ++.....+++|+|.+|..+|+|++|+..+++|+++.++.    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            3556889999999999999999999999953      111145589999999999999999999999999887554    


Q ss_pred             --hHHHHHHHHHHHHcCC-hHHHHHHHHHHHccch
Q 015733          364 --HMAAYLQAAALFALGK-ENEAQAALREASILEN  395 (401)
Q Consensus       364 --~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~~  395 (401)
                        +.+++++|.+|..+|+ +++|++.|++|+++..
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence              7899999999999995 7999999999998864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=3.6e-10  Score=113.29  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=89.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhc------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDV------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      ....+...|..+.+.|++++|++.|+++++.      +|+....+|.++|.+|...|++++|++.++++++++|+++.+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            4556777888888999999999999999887      5551267899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.+|.+|...|++++|++.|+++++++|++.
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=5.5e-10  Score=111.70  Aligned_cols=115  Identities=9%  Similarity=-0.092  Sum_probs=104.2

Q ss_pred             hhhhhccchhhhhhhhhHhHhHHhhcCC----------hHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC--ChHHHH
Q 015733          283 LSFQMWTGQMQETLNSKKKGDVAFRHKD----------FRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD--MPQEAL  350 (401)
Q Consensus       283 ~~~~~~t~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~--~~~~A~  350 (401)
                      .........++....|..+|..+...|+          +++|++.|+++++.+|+ ++.+|++|+.++.++|  ++++|+
T Consensus        51 ~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           51 LTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHH
Confidence            3334444566777889999999998888          99999999999999999 9999999999999999  779999


Q ss_pred             HHHHHhHhhCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHccchhhh
Q 015733          351 NDASQAQVISPVWHMAAYLQAAALFALG-KENEAQAALREASILENKKS  398 (401)
Q Consensus       351 ~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++++++++++|++..||+.+|.++..+| .+++|+++++++++++|.+.
T Consensus       130 ~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence            9999999999999999999999999999 99999999999999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.10  E-value=1.8e-10  Score=95.50  Aligned_cols=90  Identities=11%  Similarity=0.003  Sum_probs=81.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh-HHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH-MAAYLQ  370 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~  370 (401)
                      +.....+...|..+++.|+|++|+..|+++|+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|++. .+...+
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            445677899999999999999999999999999999 999999999999999999999999999999999999 667788


Q ss_pred             HHHHHHcCChHH
Q 015733          371 AAALFALGKENE  382 (401)
Q Consensus       371 g~~~~~~~~~~~  382 (401)
                      +.+...++++.+
T Consensus       139 ~~~~~~~~~~~~  150 (162)
T 3rkv_A          139 KIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            887776655543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.09  E-value=2.9e-10  Score=101.93  Aligned_cols=101  Identities=13%  Similarity=0.007  Sum_probs=93.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc--------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV--------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  359 (401)
                      +..+..+...|..++..|+|++|+..|.+++++        .|. ...++.++|.+|..+|++++|+..+++|+++    
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            456777889999999999999999999999987        355 6779999999999999999999999999998    


Q ss_pred             ----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 015733          360 ----SPVWHMAAYLQAAALFALGKENEAQAALREASIL  393 (401)
Q Consensus       360 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  393 (401)
                          +|....+++.+|.++..+|++++|++.|++++++
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                5788999999999999999999999999999998

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.09  E-value=3.4e-10  Score=83.48  Aligned_cols=70  Identities=21%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ...+++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|++.|+++++++|.+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~   77 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence            5779999999999999999999999999999999999999999999999999999999999999998653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=9.3e-10  Score=91.27  Aligned_cols=85  Identities=8%  Similarity=-0.096  Sum_probs=79.3

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+++.|+|++|+..|+++++++|+ +..+|+++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus        41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            4556788999999999999999999999999999999 999999999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q 015733          371 AAALFA  376 (401)
Q Consensus       371 g~~~~~  376 (401)
                      |.+...
T Consensus       120 ~l~~~~  125 (164)
T 3sz7_A          120 GLETTK  125 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.08  E-value=5.9e-10  Score=102.73  Aligned_cols=83  Identities=5%  Similarity=-0.147  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHh-cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH-HHHHHHHHHHHcCChHHHHHHHHH
Q 015733          312 RASIECYTQFID-VGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM-AAYLQAAALFALGKENEAQAALRE  389 (401)
Q Consensus       312 ~~A~~~~~~ai~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~  389 (401)
                      ++|+..|++|++ ++|+ +..+|.++|.++...|++++|.+.|++|++++|+++. +|..+|.++...|++++|+..|++
T Consensus        81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            555555555555 4555 5555555555555555555555555555555555554 555555555555555555555555


Q ss_pred             HHccch
Q 015733          390 ASILEN  395 (401)
Q Consensus       390 al~l~~  395 (401)
                      |++++|
T Consensus       160 a~~~~p  165 (308)
T 2ond_A          160 AREDAR  165 (308)
T ss_dssp             HHTSTT
T ss_pred             HHhcCC
Confidence            555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.07  E-value=5.8e-10  Score=88.04  Aligned_cols=86  Identities=12%  Similarity=0.039  Sum_probs=79.9

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC------CCCh
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVIS------PVWH  364 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~  364 (401)
                      .+.....+...|..+++.|+|++|+..|+++++++|+ +..+|+++|.++..+|++++|+..++++++++      |++.
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~  112 (126)
T 3upv_A           34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR  112 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH
Confidence            3455678999999999999999999999999999999 99999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHc
Q 015733          365 MAAYLQAAALFAL  377 (401)
Q Consensus       365 ~~~~~~g~~~~~~  377 (401)
                      .++..++.+...+
T Consensus       113 ~~~~~l~~~~~~l  125 (126)
T 3upv_A          113 EIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.07  E-value=5.1e-10  Score=102.30  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHH---hcCCCCCH----HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC----
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFI---DVGTMVSP----TAFARRSLSYLMSDMPQEALNDASQAQVISPV----  362 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai---~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  362 (401)
                      .+..+...|..++..|+|++|+..|.+|+   +..|+ +.    .+++++|.+|..+|+|++|+..+++|+++.++    
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            46678899999999999999999999999   44555 32    69999999999999999999999999988643    


Q ss_pred             --ChHHHHHHHHHHHHcCChHHH-HHHHHHHHccch
Q 015733          363 --WHMAAYLQAAALFALGKENEA-QAALREASILEN  395 (401)
Q Consensus       363 --~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~l~~  395 (401)
                        ...+++++|.+|..+|++++| ...|++|+++..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence              278999999999999999999 778999998753

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.07  E-value=9.9e-11  Score=110.25  Aligned_cols=93  Identities=10%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             HHHHHHHhhhCCCeEE--Eee-eeccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCCC
Q 015733           21 IVSLVLIASMSSFILL--AVI-FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNA   97 (401)
Q Consensus        21 ~~E~~~l~~~~h~niv--~~~-~~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~   97 (401)
                      .+|...|.++.+.++.  ..+ .....+||||++|..+..+...      +....++.||+.+|.+||+. |||||||||
T Consensus       161 ~kE~~nL~rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~~------~~~~~l~~qll~~l~~lH~~-gIVHrDLKp  233 (397)
T 4gyi_A          161 IKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSV------PDPASLYADLIALILRLAKH-GLIHGDFNE  233 (397)
T ss_dssp             HHHHHHHHHHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCCC------SCHHHHHHHHHHHHHHHHHT-TEECSCCST
T ss_pred             HHHHHHHHHHHhcCCCCCeeeeccCceEEEEecCCccHhhhccc------HHHHHHHHHHHHHHHHHHHC-CCcCCCCCH
Confidence            4566677766544321  111 1222469999998655444321      13456889999999999999 999999999


Q ss_pred             CCEEECCCC----------CeEEecccCccccC
Q 015733           98 YRIVFDDDV----------NPRLSCFGLMKNSR  120 (401)
Q Consensus        98 ~Nill~~~~----------~~kl~Dfg~~~~~~  120 (401)
                      .|||+++++          .+.|+||+.+....
T Consensus       234 ~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          234 FNILIREEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             TSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             HHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence            999998776          38899999877644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.07  E-value=2e-10  Score=93.90  Aligned_cols=75  Identities=15%  Similarity=0.021  Sum_probs=68.3

Q ss_pred             cchhhhhhhhhHhHhHHhhcCCh----------HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-----------ChH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDF----------RASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-----------MPQ  347 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-----------~~~  347 (401)
                      ...+..+..+.+.|..+.+.+++          ++|+..|++||+++|+ +..+|+++|.+|..+|           +|+
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            34667888999999999988775          5999999999999999 9999999999999885           899


Q ss_pred             HHHHHHHHhHhhCCCCh
Q 015733          348 EALNDASQAQVISPVWH  364 (401)
Q Consensus       348 ~A~~~~~~al~~~p~~~  364 (401)
                      +|+++|++|++++|++.
T Consensus       109 eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          109 LATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            99999999999999985

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.06  E-value=7e-10  Score=105.14  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=89.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+..+..+...|..+++.|+|++|++.|++|++++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|++..++..+
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4456778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHH
Q 015733          371 AAALFALGKENEAQAA  386 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~  386 (401)
                      +.++..++++++|.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=3.5e-10  Score=104.23  Aligned_cols=103  Identities=13%  Similarity=0.039  Sum_probs=90.6

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC----
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW----  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  363 (401)
                      ..+..+...|..+.. |+|++|++.|++|+++.+..     ...++.++|.+|..+|+|++|+..+++++++.|++    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            345678888999988 99999999999999987652     15689999999999999999999999999987755    


Q ss_pred             --hHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          364 --HMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       364 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                        ..+++.+|.++..+|++++|+..|++++ ++|..
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence              3488999999999999999999999999 88853

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=2e-09  Score=98.31  Aligned_cols=101  Identities=10%  Similarity=-0.007  Sum_probs=87.1

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhH---hhCCCCh---
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQ---VISPVWH---  364 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~---  364 (401)
                      ......|..+...|+|++|+..|.+|+++.+..     ...+++++|.+|..+|+|++|+..+++|+   +..|++.   
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            334567888889999999999999999876541     15699999999999999999999999999   5566643   


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          365 -MAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       365 -~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                       .+++++|.+|..+|+|++|++.|++|+++.+.
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence             69999999999999999999999999998753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.05  E-value=5.1e-10  Score=84.90  Aligned_cols=86  Identities=7%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC--hHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW--HMAAYL  369 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  369 (401)
                      +.....+...|..+++.|+|++|++.|+++++++|+ +..+|+++|.+|..+|++++|+..+++|+++.|+.  ..+...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            345667889999999999999999999999999999 99999999999999999999999999999997754  344444


Q ss_pred             HHHHHHHcC
Q 015733          370 QAAALFALG  378 (401)
Q Consensus       370 ~g~~~~~~~  378 (401)
                      +...+...+
T Consensus        83 l~~~l~~~~   91 (100)
T 3ma5_A           83 LQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            444444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.05  E-value=1.3e-10  Score=95.17  Aligned_cols=80  Identities=6%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhc-------CCCCCHHHH----HhHHHHHHhCCChHHHHHHHHHhHhhCCC
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDV-------GTMVSPTAF----ARRSLSYLMSDMPQEALNDASQAQVISPV  362 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-------~p~~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~~p~  362 (401)
                      .+..|.++|..+.+.|+|++|+.+|++||++       +|+ ++.+|    +++|.++..+|+|++|+.+|++|++++|+
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4558999999999999999999999999999       999 99999    99999999999999999999999999999


Q ss_pred             ChHHHHHHHHHH
Q 015733          363 WHMAAYLQAAAL  374 (401)
Q Consensus       363 ~~~~~~~~g~~~  374 (401)
                      +....-.+..+.
T Consensus       135 d~~~~~~~~~~~  146 (159)
T 2hr2_A          135 RKGETPGKERMM  146 (159)
T ss_dssp             CCSCCTTHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            877655554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.05  E-value=5.2e-10  Score=91.21  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC------hH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW------HM  365 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~  365 (401)
                      .+...|..++..|++++|++.|.+++++.+..     ...++.++|.++..+|++++|+..+++++++.+..      ..
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            44455555555556666666665555543320     13355555555555566666666555555555555      23


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      +++.+|.++..+|++++|++.|++++++.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            45555555555666666666665555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=1.9e-09  Score=97.15  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             hhhhhhhhHhHhHHhh----cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCC
Q 015733          292 MQETLNSKKKGDVAFR----HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVW  363 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~  363 (401)
                      ......+...|..+..    .+++++|++.|.++++.+   ++.+++++|.+|..    .+++++|+..+++|++.  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~  109 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KY  109 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CC
Confidence            4556678888999998    999999999999999884   57899999999999    99999999999999987  48


Q ss_pred             hHHHHHHHHHHHH----cCChHHHHHHHHHHHccch
Q 015733          364 HMAAYLQAAALFA----LGKENEAQAALREASILEN  395 (401)
Q Consensus       364 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~  395 (401)
                      +.+++.+|.+|..    .+++++|++.|++|+++++
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence            8999999999999    9999999999999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=9.4e-10  Score=107.79  Aligned_cols=107  Identities=12%  Similarity=0.036  Sum_probs=100.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..++..|++++|+..|.++++.+|. +..++.++|.++...|++++|+..++++++.+|+++.+++.+
T Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  378 (514)
T 2gw1_A          300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF  378 (514)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHH
Confidence            3445667888999999999999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.++...|++++|+..|+++++++|...
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999988653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.04  E-value=4.3e-10  Score=103.64  Aligned_cols=103  Identities=12%  Similarity=-0.035  Sum_probs=91.2

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC----
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW----  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  363 (401)
                      ..+..+.+.|..+.+.|+|++|+.+|.+|+++.+..     ...++.++|.+|.. |++++|+..|++|+++.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            446678889999999999999999999999885321     24689999999999 99999999999999998764    


Q ss_pred             --hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 --HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                        ..++.++|.+|..+|+|++|++.|++++++.+.
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              678999999999999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.04  E-value=4.9e-10  Score=102.13  Aligned_cols=104  Identities=11%  Similarity=-0.004  Sum_probs=94.5

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc--------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV--------GTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  359 (401)
                      ......+...|..++..|++++|++.|.+++++        .|. ...++.++|.+|..+|++++|+..+++++++    
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            455677888999999999999999999999998        666 6779999999999999999999999999974    


Q ss_pred             ---------------------------------------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          360 ---------------------------------------------SPVWHMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       360 ---------------------------------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                                                                   .|..+.+++.+|.+|..+|++++|++.|++|+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                                                         57788999999999999999999999999999987


Q ss_pred             hh
Q 015733          395 NK  396 (401)
Q Consensus       395 ~~  396 (401)
                      +.
T Consensus       309 ~~  310 (311)
T 3nf1_A          309 KQ  310 (311)
T ss_dssp             C-
T ss_pred             hc
Confidence            64

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.03  E-value=1.1e-09  Score=109.83  Aligned_cols=98  Identities=8%  Similarity=-0.088  Sum_probs=54.7

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      ..+...|..+.+.|++++|++.|+++++..|+ +..+|+.+|.+|.+.|++++|++.++++++++|+++.+|+.+|.+|.
T Consensus       408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34444555555555555555555555555555 55555555555555555555555555555555555555555555555


Q ss_pred             HcCChHHHHHHHHHHHccc
Q 015733          376 ALGKENEAQAALREASILE  394 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l~  394 (401)
                      ..|++++|++.|++++++.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhh
Confidence            5555555555555555553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.03  E-value=1.1e-09  Score=99.88  Aligned_cols=97  Identities=11%  Similarity=-0.035  Sum_probs=90.5

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC--hHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW--HMAAYLQAA  372 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~  372 (401)
                      .......+..+.+.+++++|++.|.++++.+|+ +..+++++|.+|...|++++|+..++++++.+|++  ..++.++|.
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            344556667788889999999999999999999 99999999999999999999999999999999999  999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHc
Q 015733          373 ALFALGKENEAQAALREASI  392 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~  392 (401)
                      ++..+|+.++|+..|++++.
T Consensus       264 ~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999985

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.02  E-value=1.4e-09  Score=100.08  Aligned_cols=96  Identities=8%  Similarity=-0.060  Sum_probs=78.3

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHH-hCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYL-MSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      .+...|..+.+.|++++|+..|++|++.+|. ...+|...+.... ..|++++|++.|++|++++|+++.+|..+|..+.
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  214 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            6777788888888888888888888888887 7777776665543 3688888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHcc
Q 015733          376 ALGKENEAQAALREASIL  393 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l  393 (401)
                      .+|++++|+..|++|++.
T Consensus       215 ~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          215 HLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHS
T ss_pred             HCCCHHHHHHHHHHHHhc
Confidence            888888888888888885

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.02  E-value=2.5e-09  Score=98.16  Aligned_cols=94  Identities=6%  Similarity=-0.123  Sum_probs=86.9

Q ss_pred             HHhhcCCh-HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC--ChHHHHHHHHHhHhhCCCChHHHHHHHHHH----HH
Q 015733          304 VAFRHKDF-RASIECYTQFIDVGTMVSPTAFARRSLSYLMSD--MPQEALNDASQAQVISPVWHMAAYLQAAAL----FA  376 (401)
Q Consensus       304 ~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~----~~  376 (401)
                      ...+.|++ ++|++.++++|+++|+ +.++|+.|+.++..+|  +++++++.++++|.++|++..+|+.++.++    ..
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence            34455555 6899999999999999 9999999999999999  999999999999999999999999999999    77


Q ss_pred             c---CChHHHHHHHHHHHccchhhh
Q 015733          377 L---GKENEAQAALREASILENKKS  398 (401)
Q Consensus       377 ~---~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +   ++++++++.++++++++|++.
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCCH
Confidence            7   899999999999999999864

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.02  E-value=2.8e-09  Score=99.07  Aligned_cols=115  Identities=7%  Similarity=-0.082  Sum_probs=102.0

Q ss_pred             hhhhhccchhhhhhhhhHhHhHHhhcC-ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC-C-ChHHHHHHHHHhHhh
Q 015733          283 LSFQMWTGQMQETLNSKKKGDVAFRHK-DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS-D-MPQEALNDASQAQVI  359 (401)
Q Consensus       283 ~~~~~~t~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~  359 (401)
                      ....+....++....|..++..+...| +++++++.++++|..+|+ +..+|++|+.++..+ + +++++++.+++++++
T Consensus        76 lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~  154 (349)
T 3q7a_A           76 LTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP  154 (349)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence            333444456677788999999998888 599999999999999999 999999999999988 8 999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCChH--------HHHHHHHHHHccchhhh
Q 015733          360 SPVWHMAAYLQAAALFALGKEN--------EAQAALREASILENKKS  398 (401)
Q Consensus       360 ~p~~~~~~~~~g~~~~~~~~~~--------~A~~~~~~al~l~~~~~  398 (401)
                      +|++..+|+.++.++..+|.++        ++++.++++++.+|.+.
T Consensus       155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~  201 (349)
T 3q7a_A          155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN  201 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999988        99999999999998653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.01  E-value=9.4e-10  Score=110.01  Aligned_cols=110  Identities=9%  Similarity=0.002  Sum_probs=101.3

Q ss_pred             ccchhhhhhhhhHhHhHHhhcC--ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-ChHHHHHHHHHhHhhCCCCh
Q 015733          288 WTGQMQETLNSKKKGDVAFRHK--DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-MPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       288 ~t~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~  364 (401)
                      ....++....|..+|-.+.+.+  ++++|++.++++++.+|. +..+|++|+.+...+| .+++|+++++++|+.+|++.
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence            3445667778999999999999  679999999999999999 9999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHHc--------------CChHHHHHHHHHHHccchhhh
Q 015733          365 MAAYLQAAALFAL--------------GKENEAQAALREASILENKKS  398 (401)
Q Consensus       365 ~~~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .||+.+|.++..+              +.+++|++.+++|++++|.+.
T Consensus       179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence            9999999999986              668999999999999999764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.01  E-value=9.5e-10  Score=104.34  Aligned_cols=104  Identities=12%  Similarity=0.074  Sum_probs=93.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHh-----hC-
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQV-----IS-  360 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~-  360 (401)
                      ...+..+...|..+...|+|++|++.|.+|+++.+..     ...+++++|.+|..+|++++|+..+++|++     .+ 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            3456678889999999999999999999999885541     235899999999999999999999999999     46 


Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          361 PVWHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       361 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      |..+.+++.+|.++..+|++++|++.|++|+++.+
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.01  E-value=1e-09  Score=104.67  Aligned_cols=103  Identities=15%  Similarity=0.127  Sum_probs=96.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH----HHHHhHHHHHHhCCChHHHHHHHHHhHhh------CC
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP----TAFARRSLSYLMSDMPQEALNDASQAQVI------SP  361 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p  361 (401)
                      ...+..+...|..++..|+|++|+..|+++++++|+ +.    .+++++|.+|..+|++++|+..+++++++      .|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            456777889999999999999999999999999999 75    58999999999999999999999999998      68


Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          362 VWHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       362 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      ....+++.+|.+|..+|++++|++.|++++++.+
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  157 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR  157 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999843

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.01  E-value=8.7e-10  Score=84.17  Aligned_cols=72  Identities=13%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          324 VGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       324 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ++|+ +..+++.+|.++...|++++|+..++++++++|++..+++.+|.++..+|++++|++.|+++++++|.
T Consensus         1 l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQ-NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCS-STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCC-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3677 88899999999999999999999999999999999999999999999999999999999999999887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.01  E-value=1.5e-09  Score=99.49  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=93.2

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC----HHHHHhHHHHHHhCCChHHHHHHHHHhHhh------CCCCh
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS----PTAFARRSLSYLMSDMPQEALNDASQAQVI------SPVWH  364 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~  364 (401)
                      ...+...|..++..|+|++|+..|+++++.+|+ +    ..++.++|.++...|++++|+..+++++++      .|...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            456788899999999999999999999999998 7    468999999999999999999999999987      56678


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          365 MAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       365 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .+++.+|.++..+|++++|++.|++++++.+.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=9.7e-10  Score=100.44  Aligned_cols=101  Identities=10%  Similarity=-0.007  Sum_probs=85.8

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-C----HHHHHhHHHHHHhCCChHHHHHHHHHhHhh-------CCCCh
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-S----PTAFARRSLSYLMSDMPQEALNDASQAQVI-------SPVWH  364 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~  364 (401)
                      .+...|..+...|+|++|+..|.+|+++.+.. +    ..+++++|.+|..+|+|++|+..+++|+++       .+...
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            34457888899999999999999999965431 1    347999999999999999999999999952       23445


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          365 MAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       365 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+++++|.+|..+|+|++|++.|++|+++.+..
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            689999999999999999999999999987643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.00  E-value=1.2e-09  Score=85.99  Aligned_cols=68  Identities=21%  Similarity=0.012  Sum_probs=64.7

Q ss_pred             HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          331 TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       331 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..++.+|.++...|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|.+.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~   85 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   85 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            35788999999999999999999999999999999999999999999999999999999999999754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.99  E-value=1.6e-09  Score=102.55  Aligned_cols=102  Identities=17%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC----HHHHHhHHHHHHhCCChHHHHHHHHHhHhh------CCCC
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS----PTAFARRSLSYLMSDMPQEALNDASQAQVI------SPVW  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~  363 (401)
                      .+..+...|..++..|+|++|+..|+++++..|. +    ..++.++|.++...|++++|+..+++|+++      .|..
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3556788999999999999999999999999998 6    468999999999999999999999999987      5666


Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999998765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.98  E-value=1.5e-09  Score=88.49  Aligned_cols=104  Identities=10%  Similarity=0.072  Sum_probs=92.6

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCC-----CCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTM-----VSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW---  363 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  363 (401)
                      ...+..+...|..++..|++++|++.|.+++++.+.     ....++.++|.++..+|++++|+..+++++++.++.   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            456778899999999999999999999999987442     147799999999999999999999999999886654   


Q ss_pred             ---hHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          364 ---HMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       364 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                         ..+++.+|.++..+|++++|++.|++++++..
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               67899999999999999999999999998854

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.98  E-value=1.3e-09  Score=93.10  Aligned_cols=105  Identities=12%  Similarity=-0.060  Sum_probs=68.5

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc---CCC---CCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC--C
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV---GTM---VSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV--W  363 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~  363 (401)
                      ...+..+...|..+...|++++|++.|.+++++   .++   ....+++++|.++..+|++++|+..+++++++.+.  +
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            344556666777777777777777777777766   332   12446777777777777777777777777755322  1


Q ss_pred             ----hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 ----HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 ----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                          ..++..+|.++..+|++++|++.|++|+++...
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence                223567777777777777777777777766443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.97  E-value=2.4e-09  Score=85.41  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             hcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          323 DVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       323 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+|. .+..++.+|.+++..|+|++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus         3 ~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            3 HMKSP-SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             ---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCccc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence            35667 8899999999999999999999999999999999999999999999999999999999999999998753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.97  E-value=1.3e-09  Score=82.03  Aligned_cols=66  Identities=20%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             HHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          333 FARRSLSYLMSDMPQEALNDASQAQVISPVWHM-AAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       333 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+++|.++...|+|++|+..++++++++|+++. +++.+|.+|..+|++++|++.|+++++++|.+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            367899999999999999999999999999999 999999999999999999999999999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=1.3e-09  Score=105.94  Aligned_cols=106  Identities=10%  Similarity=-0.008  Sum_probs=93.5

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC-------------------CChHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS-------------------DMPQEALN  351 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~-------------------~~~~~A~~  351 (401)
                      .+.....+...|..+...|++++|++.|.+|++.+|+ ++.+++++|.+|...                   +.+++|+.
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  321 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA  321 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence            4456667888999999999999999999999999999 999999999988643                   44678999


Q ss_pred             HHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          352 DASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       352 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .++++++++|++..+++.+|.++..+|++++|++.|++|+++++++
T Consensus       322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999887643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.97  E-value=4.6e-09  Score=81.56  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .....+...|..++..|++++|+..|+++++.+|. +..+++++|.++...|++++|+..++++++++|++..++..+|.
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34556788899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 015733          373 ALFALG  378 (401)
Q Consensus       373 ~~~~~~  378 (401)
                      ++...|
T Consensus       120 ~~~~~g  125 (125)
T 1na0_A          120 AKQKQG  125 (125)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            988765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.96  E-value=1.5e-09  Score=102.99  Aligned_cols=104  Identities=10%  Similarity=0.003  Sum_probs=91.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC------CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV------SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      ....+..+...|..++..|++++|+..|.+|+++.+..      .+.+++++|.+|..+|+|++|+..+++|+++.++..
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            34567789999999999999999999999999985441      345899999999999999999999999998866544


Q ss_pred             ------HHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          365 ------MAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       365 ------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                            .+++++|.+|..+|++++|++.|++|+++.
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                  599999999999999999999999999963

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=99.01  Aligned_cols=104  Identities=10%  Similarity=0.014  Sum_probs=94.7

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC--------CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG--------TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  359 (401)
                      ......+...|..+...|++++|++.|.+++++.        |. ...++.++|.++...|++++|+..+++++++    
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4456678889999999999999999999999874        44 6678999999999999999999999999998    


Q ss_pred             ----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          360 ----SPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       360 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                          .|....+++.+|.+|..+|++++|++.|++++++.+.
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                7888899999999999999999999999999987654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.95  E-value=1.9e-09  Score=102.11  Aligned_cols=104  Identities=11%  Similarity=0.009  Sum_probs=93.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCC-----CCHHHHHhHHHHHHhCCChHHHHHHHHHhHh-----hCCC
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTM-----VSPTAFARRSLSYLMSDMPQEALNDASQAQV-----ISPV  362 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~  362 (401)
                      ..+..+...|..+...|+|++|++.|.+|+++.+.     ....+++++|.+|..+|++++|+..+++|++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            45667889999999999999999999999987331     1346899999999999999999999999999     8888


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .+.+++.+|.++..+|++++|++.|++|+++.+.
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999998543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=9.3e-09  Score=95.06  Aligned_cols=113  Identities=8%  Similarity=-0.113  Sum_probs=99.3

Q ss_pred             hhhccchhhhhhhhhHhHhHHhhcCC----------hHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC--ChHHHHHH
Q 015733          285 FQMWTGQMQETLNSKKKGDVAFRHKD----------FRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD--MPQEALND  352 (401)
Q Consensus       285 ~~~~t~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~--~~~~A~~~  352 (401)
                      .......++....|..++..+...++          +++++..+++++..+|. ++.+|++|+.++..+|  ++++++..
T Consensus        54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~  132 (331)
T 3dss_A           54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELEL  132 (331)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred             HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHH
Confidence            33444456667778888877766655          78999999999999999 9999999999999999  48999999


Q ss_pred             HHHhHhhCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHccchhhh
Q 015733          353 ASQAQVISPVWHMAAYLQAAALFALGK-ENEAQAALREASILENKKS  398 (401)
Q Consensus       353 ~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~~~~~  398 (401)
                      ++++++++|.|..||+.+|.++..+|. +++++++++++++.+|.+.
T Consensus       133 ~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          133 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999999999 6999999999999998754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.94  E-value=1.9e-09  Score=96.99  Aligned_cols=105  Identities=14%  Similarity=-0.019  Sum_probs=91.6

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC-CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC--CC-ChHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVG-TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVIS--PV-WHMA  366 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~  366 (401)
                      .+... ..+..|..+++.|+|++|+..|++++... |.....+++++|.++..+|++++|+..|++++.-.  |. .+.+
T Consensus       132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da  210 (282)
T 4f3v_A          132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI  210 (282)
T ss_dssp             TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred             CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence            34555 78899999999999999999999887763 22014589999999999999999999999998654  66 6789


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ++++|.++..+|+.++|...|++++..+|.
T Consensus       211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          211 AWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999986

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=5.1e-09  Score=96.79  Aligned_cols=109  Identities=9%  Similarity=0.011  Sum_probs=99.7

Q ss_pred             cchhhhhhhhhHhHhHHhhcC--ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCC-hHHHHHHHHHhHhhCCCChH
Q 015733          289 TGQMQETLNSKKKGDVAFRHK--DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM-PQEALNDASQAQVISPVWHM  365 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~  365 (401)
                      ...++....|..++-.+...+  +++++++.++++++.+|. +..+|++|+.+...+|. +++++++++++|+.+|.|..
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            445666777888888888888  499999999999999999 99999999999999999 69999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CChHHHHHHHHHHHccchhhh
Q 015733          366 AAYLQAAALFAL--------------GKENEAQAALREASILENKKS  398 (401)
Q Consensus       366 ~~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ||+.+|.++..+              +.++++++.+++|+.++|.+.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            999999999998              569999999999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=7.5e-10  Score=100.78  Aligned_cols=104  Identities=6%  Similarity=-0.024  Sum_probs=88.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH-----
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM-----  365 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----  365 (401)
                      .+.....+...|..+++.|+|++|+..|++|++++|+ +..+++++|.+|..+|++++|+..+++|++++|++..     
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  112 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD  112 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence            4456778899999999999999999999999999999 9999999999999999999999999999999987631     


Q ss_pred             --------------------------HHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          366 --------------------------AAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       366 --------------------------~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                                                ....+|..  ..|++++|++.|++|++++|.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A          113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccch
Confidence                                      11112222  3689999999999999998854

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.2e-08  Score=82.08  Aligned_cols=81  Identities=11%  Similarity=0.051  Sum_probs=76.5

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..++..|+|++|+..|+++++.+|+ +..+++++|.++..+|++++|+..++++++++|++..++..++.+.
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            678899999999999999999999999999999 9999999999999999999999999999999999999999888775


Q ss_pred             HH
Q 015733          375 FA  376 (401)
Q Consensus       375 ~~  376 (401)
                      ..
T Consensus       144 ~~  145 (148)
T 2dba_A          144 GP  145 (148)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=7e-09  Score=79.71  Aligned_cols=83  Identities=7%  Similarity=-0.037  Sum_probs=77.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..++..|++++|+..|.++++.+|+ +..+++++|.++..+|++++|+..++++++++|+++.++..++
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            344667888999999999999999999999999999 9999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 015733          372 AALF  375 (401)
Q Consensus       372 ~~~~  375 (401)
                      .+..
T Consensus       114 ~~~~  117 (118)
T 1elw_A          114 NMEA  117 (118)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=1.2e-08  Score=91.69  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=89.8

Q ss_pred             hhhhhhhHhHhHHhh----cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCCh
Q 015733          293 QETLNSKKKGDVAFR----HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      .....+...|..+..    .+++++|++.|+++++.  + ++.+++++|.+|..    .+++++|+..+++|++.+  ++
T Consensus        72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~  146 (273)
T 1ouv_A           72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--K-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG  146 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--C-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence            366778889999999    99999999999999998  4 68899999999999    999999999999999986  78


Q ss_pred             HHHHHHHHHHHH----cCChHHHHHHHHHHHccch
Q 015733          365 MAAYLQAAALFA----LGKENEAQAALREASILEN  395 (401)
Q Consensus       365 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~  395 (401)
                      .+++.+|.+|..    .+++++|++.|+++++.++
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  181 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD  181 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            999999999999    9999999999999998864

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=7.5e-09  Score=77.28  Aligned_cols=71  Identities=17%  Similarity=0.027  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHhHHHHHHhCCC---hHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          325 GTMVSPTAFARRSLSYLMSDM---PQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       325 ~p~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +|+ ++.++..+|.+++..++   ..+|...+++|++++|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus         2 ~p~-~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAV-TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCC-CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            577 89999999999876655   799999999999999999999999999999999999999999999999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.90  E-value=9.1e-09  Score=78.62  Aligned_cols=78  Identities=13%  Similarity=-0.006  Sum_probs=70.8

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcC-------CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVG-------TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      +.+.+..|..+++.|+|..|+.+|.+|++..       +. ...++.++|.|++++|++++|+..+++|++++|++..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            5678899999999999999999999999863       23 678999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 015733          368 YLQAAA  373 (401)
Q Consensus       368 ~~~g~~  373 (401)
                      .+++..
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            888743

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.89  E-value=1.4e-08  Score=94.24  Aligned_cols=92  Identities=8%  Similarity=-0.050  Sum_probs=85.9

Q ss_pred             hhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-ChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHc-C-ChHH
Q 015733          306 FRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-MPQEALNDASQAQVISPVWHMAAYLQAAALFAL-G-KENE  382 (401)
Q Consensus       306 ~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~-~~~~  382 (401)
                      .+.+..++|++.++++|+++|+ +..+|+.|+.++..+| .++++++.++++|..+|++..+|+.++.++..+ + ++++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            3445567999999999999999 9999999999999999 599999999999999999999999999999998 8 9999


Q ss_pred             HHHHHHHHHccchhhh
Q 015733          383 AQAALREASILENKKS  398 (401)
Q Consensus       383 A~~~~~~al~l~~~~~  398 (401)
                      +++.+++++++||++.
T Consensus       144 EL~~~~k~L~~dpkNy  159 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHHHHHTSSCTTCH
T ss_pred             HHHHHHHHHHhCCCCH
Confidence            9999999999999764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=5.8e-09  Score=80.85  Aligned_cols=85  Identities=12%  Similarity=0.018  Sum_probs=72.5

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC--hHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW--HMAAYLQ  370 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~  370 (401)
                      .....+...|..++..|+|++|+..|.++++++|+ +..+|+++|.+|..+|++++|+..++++++++|+.  ..+...+
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l   95 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKEL   95 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            44567889999999999999999999999999999 99999999999999999999999999999998854  3444444


Q ss_pred             HHHHHHcC
Q 015733          371 AAALFALG  378 (401)
Q Consensus       371 g~~~~~~~  378 (401)
                      ...+..++
T Consensus        96 ~~~l~~l~  103 (115)
T 2kat_A           96 QVFLRRLA  103 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            44444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.86  E-value=5.7e-09  Score=102.13  Aligned_cols=103  Identities=12%  Similarity=-0.017  Sum_probs=87.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc-----CCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV-----GTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVI-----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----  359 (401)
                      ...+....+.+..+..+|+|++|+..|.+++++     .|+.  -+..++|+|.+|..+|+|++|+..+++++++     
T Consensus       306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l  385 (490)
T 3n71_A          306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY  385 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            345566677777888999999999999999975     2330  3458999999999999999999999999965     


Q ss_pred             CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          360 SPVW---HMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       360 ~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      .|++   ...++++|.+|..+|+|++|+..|++|+++-
T Consensus       386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3444   5689999999999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=6.9e-09  Score=88.46  Aligned_cols=102  Identities=13%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHh------cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh---CC--
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFID------VGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVI---SP--  361 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p--  361 (401)
                      ..+..+...|..++..|+|++|+..|.++++      ..+. ...++.++|.+|..+|++++|+..+++++++   .+  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence            3466788899999999999999999999998      3444 6779999999999999999999999999988   44  


Q ss_pred             --CChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          362 --VWHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       362 --~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                        ....+++.+|.++..+|++++|++.|++++++..
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              3457899999999999999999999999998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.85  E-value=2.5e-08  Score=78.43  Aligned_cols=83  Identities=12%  Similarity=0.009  Sum_probs=74.5

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      ..+...|..+++.|+|++|+..|+++++.+|+ +   +.+++++|.++..+|++++|+..++++++.+|++..+...+..
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56788999999999999999999999999999 8   8899999999999999999999999999999999988877776


Q ss_pred             HHHHcCC
Q 015733          373 ALFALGK  379 (401)
Q Consensus       373 ~~~~~~~  379 (401)
                      +....++
T Consensus       119 l~~l~~~  125 (129)
T 2xev_A          119 LQSIRLG  125 (129)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            6555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=1e-08  Score=89.04  Aligned_cols=96  Identities=11%  Similarity=-0.005  Sum_probs=66.5

Q ss_pred             hhhhhhHhHhHHhhcC----ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCC--CC
Q 015733          294 ETLNSKKKGDVAFRHK----DFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISP--VW  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~----~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~  363 (401)
                      .+..+...|..+.. +    ++++|+++|.+|++  +. ++.+++++|.+|..    .+++++|+..+++|++..|  ++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            44555666666665 5    67777777777754  34 56677777777776    6777777777777777766  35


Q ss_pred             hHHHHHHHHHHHH----cCChHHHHHHHHHHHcc
Q 015733          364 HMAAYLQAAALFA----LGKENEAQAALREASIL  393 (401)
Q Consensus       364 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l  393 (401)
                      +.+++++|.+|..    .+++++|++.|++|+++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            7777777777777    67777777777777766

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.85  E-value=4.7e-09  Score=99.34  Aligned_cols=102  Identities=10%  Similarity=0.064  Sum_probs=73.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH------HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP------TAFARRSLSYLMSDMPQEALNDASQAQVISPVW---  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  363 (401)
                      ..+..+...|..++..|+|++|+..|.+++++.+. ..      .++.++|.+|..+|++++|+..+++++++.|+.   
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            34455667777777777777777777777776544 22      277777777777777777777777777776655   


Q ss_pred             ---hHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          364 ---HMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       364 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                         ..+++.+|.++..+|++++|++.|++++++.+
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence               66777777777777777777777777777654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=1.6e-08  Score=87.70  Aligned_cols=103  Identities=11%  Similarity=-0.031  Sum_probs=91.3

Q ss_pred             hhhhhhhHhHhHHhh----cCChHHHHHHHHHHHhcCCC-CCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCC
Q 015733          293 QETLNSKKKGDVAFR----HKDFRASIECYTQFIDVGTM-VSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVW  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~-~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~  363 (401)
                      ..+..+...|..+..    .+++++|+++|.+|++..+. ..+.+++++|.+|..    .+++++|+..+++|+++ |.+
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence            456677888888887    89999999999999999883 048899999999999    89999999999999999 888


Q ss_pred             hHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHccchh
Q 015733          364 HMAAYLQAAALFAL-G-----KENEAQAALREASILENK  396 (401)
Q Consensus       364 ~~~~~~~g~~~~~~-~-----~~~~A~~~~~~al~l~~~  396 (401)
                      +.+++++|.+|... |     ++++|++.|++|++....
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            99999999999864 3     999999999999988643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=1.3e-08  Score=82.15  Aligned_cols=88  Identities=10%  Similarity=0.003  Sum_probs=75.1

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC---ChHHHHHHHHHhHhhC-C-CChHHHHHHHHHHHHcCChHHHH
Q 015733          310 DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD---MPQEALNDASQAQVIS-P-VWHMAAYLQAAALFALGKENEAQ  384 (401)
Q Consensus       310 ~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~  384 (401)
                      ....+.+.|.++++.++. +..+.++.|.++.+.+   ++++|+..+++.++.+ | +..+++|++|.+++++|+|++|+
T Consensus        13 ~l~~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            455777888888888887 8889999999999988   7779999999999888 7 66889999999999999999999


Q ss_pred             HHHHHHHccchhhh
Q 015733          385 AALREASILENKKS  398 (401)
Q Consensus       385 ~~~~~al~l~~~~~  398 (401)
                      +.++++|+++|.+.
T Consensus        92 ~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           92 KYVRGLLQTEPQNN  105 (152)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHhcCCCCH
Confidence            99999999998654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.83  E-value=5.1e-09  Score=99.76  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=79.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH------HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC---
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP------TAFARRSLSYLMSDMPQEALNDASQAQVISPVW---  363 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  363 (401)
                      ..+..+...|..++..|+|++|++.|.+++++.+. ..      .++.++|.+|..+|++++|+..+++++++.++.   
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            34456777788888888888888888888877654 22      278888888888888888888888888777754   


Q ss_pred             ---hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 ---HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                         ..+++.+|.++..+|++++|++.|++++++.+.
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               677888888888888888888888888877543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.81  E-value=1.1e-08  Score=96.99  Aligned_cols=101  Identities=14%  Similarity=0.058  Sum_probs=86.7

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCC-----CCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC-------
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTM-----VSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV-------  362 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------  362 (401)
                      ...++.+|..++..|+|++|+..|.+|+++.+.     ..+.+++++|.+|..+|++++|+..+++|+++.+.       
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            335778899999999999999999999987321     14569999999999999999999999999987543       


Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          363 WHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       363 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      .+.+++++|.+|..+|++++|++.|++|+++.+
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  213 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAM  213 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999999998754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.81  E-value=1.1e-08  Score=98.42  Aligned_cols=96  Identities=10%  Similarity=-0.091  Sum_probs=80.6

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhc-----CCCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----CCCC-
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDV-----GTMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVI-----SPVW-  363 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~-  363 (401)
                      ..+.+......|+|++|+..|.+++++     .|+ .   +..++|+|.+|..+|+|++|+..+++++++     .|++ 
T Consensus       301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            334445555678999999999999975     344 3   458999999999999999999999999965     3444 


Q ss_pred             --hHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          364 --HMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       364 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                        +..++++|.+|..+|+|++|+..|++|+++-
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence              5679999999999999999999999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.77  E-value=9.1e-09  Score=94.22  Aligned_cols=102  Identities=10%  Similarity=0.077  Sum_probs=69.4

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-----
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-----  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  363 (401)
                      .+..+...|..++..|++++|++.|++++++.+..     ...++.++|.++...|++++|+..+++++++.++.     
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  261 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  261 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence            34456666777777777777777777777664330     12267777777777777777777777777666554     


Q ss_pred             -hHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          364 -HMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       364 -~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                       ..+++.+|.++..+|++++|++.|++++++.+
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             56677777777777777777777777776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=7.9e-08  Score=77.39  Aligned_cols=91  Identities=12%  Similarity=0.004  Sum_probs=84.5

Q ss_pred             hHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          301 KGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       301 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      .|..+...+.+++|+++|.+|.+.  . ++.+++++|.+|..    .+++++|+..+++|.+.  .++.+++++|.+|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--N-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            788888888999999999999997  5 78999999999999    89999999999999987  789999999999999


Q ss_pred             ----cCChHHHHHHHHHHHccchh
Q 015733          377 ----LGKENEAQAALREASILENK  396 (401)
Q Consensus       377 ----~~~~~~A~~~~~~al~l~~~  396 (401)
                          .+++++|++.|++|.+.+..
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCH
Confidence                99999999999999988643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.72  E-value=1.1e-07  Score=88.31  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             HHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          336 RSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       336 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|.++...|++++|+..+++|++++|+ ..+|..+|.++...|++++|++.|++|+.++|..
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            444455579999999999999999975 6788999999999999999999999999999865

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.69  E-value=4.4e-08  Score=94.38  Aligned_cols=99  Identities=13%  Similarity=0.014  Sum_probs=83.7

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcC-----CCCC---HHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----CC
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVG-----TMVS---PTAFARRSLSYLMSDMPQEALNDASQAQVI-----SP  361 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p  361 (401)
                      +.........+.+.|+|++|++.|++++++.     |+ +   ...+.++|.+|..+|+|++|+..+++++++     .|
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            4455555667778999999999999999763     33 3   458999999999999999999999999965     34


Q ss_pred             CC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          362 VW---HMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       362 ~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      ++   ...++++|.+|..+|+|++|+..|++|+++-
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            44   4579999999999999999999999999874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.68  E-value=3.2e-08  Score=77.44  Aligned_cols=85  Identities=18%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC-------HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS-------PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  365 (401)
                      .....+...|..++..|+|++|+..|.++++..|. +       ..+++++|.++..+|++++|+..+++++++.| ++.
T Consensus        36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~  113 (131)
T 1elr_A           36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPD  113 (131)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHH
Confidence            34566788999999999999999999999999887 6       88999999999999999999999999999999 688


Q ss_pred             HHHHHHHHHHHcCC
Q 015733          366 AAYLQAAALFALGK  379 (401)
Q Consensus       366 ~~~~~g~~~~~~~~  379 (401)
                      .+..++.++..+++
T Consensus       114 ~~~~l~~~~~~~~~  127 (131)
T 1elr_A          114 VLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89998888776554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.64  E-value=1.1e-07  Score=94.31  Aligned_cols=105  Identities=5%  Similarity=-0.142  Sum_probs=84.0

Q ss_pred             hhhhhhhhhHhHhHHhh-------cCChH-------HHHHHHHHHHh-cCCCCCHHHHHhHHHHHHhCCChHHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFR-------HKDFR-------ASIECYTQFID-VGTMVSPTAFARRSLSYLMSDMPQEALNDASQ  355 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~-------~~~~~-------~A~~~~~~ai~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  355 (401)
                      .+.....|...|..+.+       .|+++       +|+..|++|++ .+|+ +..+|.++|..+...|++++|...|++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34456677777777765       68876       88888888887 7888 888888888888888888888888888


Q ss_pred             hHhhCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          356 AQVISPVWH-MAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       356 al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +++++|+++ .+|..+|.++...|++++|++.|++|++..|.
T Consensus       347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            888888875 58888888888888888888888888876553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.61  E-value=6e-08  Score=87.29  Aligned_cols=97  Identities=12%  Similarity=0.047  Sum_probs=85.5

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC--hHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW--HMAAYLQAAA  373 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~  373 (401)
                      .-....+..+...|+|++|.+.|+.++...|+ +. +++.+|.++++.|+|++|+..+++++...+..  ..+++.+|.+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            34455678899999999999999999999998 77 99999999999999999999999998764332  4589999999


Q ss_pred             HHHcCChHHHHHHHHHHHccc
Q 015733          374 LFALGKENEAQAALREASILE  394 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~  394 (401)
                      +..+|++++|+..|++++.-.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHCCCHHHHHHHHHHHhcCC
Confidence            999999999999999998543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.57  E-value=2.8e-07  Score=86.65  Aligned_cols=100  Identities=12%  Similarity=0.033  Sum_probs=88.1

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcC--------CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC----
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVG--------TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV----  362 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  362 (401)
                      +..+...|..++..|+|++|++.|++++++.        |. ...++.++|.++...|++++|+..+++++++.+.    
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence            4456788999999999999999999999874        33 4568899999999999999999999999998875    


Q ss_pred             -ChHHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          363 -WHMAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       363 -~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                       ...++..+|.++...|++++|+..+++++++.+
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence             346899999999999999999999999998743

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.56  E-value=2.3e-07  Score=91.92  Aligned_cols=99  Identities=9%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH-HHHHhHHHHHHh-------------------------------
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP-TAFARRSLSYLM-------------------------------  342 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-~~~~~~a~~~~~-------------------------------  342 (401)
                      ..-+...|..+.+.|++++|...|++++++.|. ++ .+|.+.|.++.+                               
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            444555555555556666666666666666555 43 355555544444                               


Q ss_pred             ----CCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          343 ----SDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       343 ----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                          .|++++|...|++|++..|+++.+|..+|..+..+|++++|...|++|++..
T Consensus       400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence                5555555555555555555555555555555555555555555555555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.55  E-value=1.3e-07  Score=88.84  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=87.8

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-C----HHHHHhHHHHHHhCCChHHHHHHHHHhHhhC--------C
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-S----PTAFARRSLSYLMSDMPQEALNDASQAQVIS--------P  361 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p  361 (401)
                      ...+...|..++..|++++|++.|.+++++.+.. +    ..++.++|.++...|++++|+..+++++++.        |
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            4456788999999999999999999999876541 1    2357899999999999999999999999875        4


Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          362 VWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       362 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ....++..+|.++...|++++|+..|++++++.+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            45678889999999999999999999999988764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.53  E-value=3.5e-07  Score=69.61  Aligned_cols=70  Identities=9%  Similarity=-0.144  Sum_probs=63.2

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC-------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVIS-------PVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+.-.+.+|..++..|+|..|+..+++|++..       +.....+..+|.+++.+|++++|+..+++|++++|.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45677899999999999999999999999863       45678999999999999999999999999999999764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.46  E-value=6.6e-07  Score=79.84  Aligned_cols=87  Identities=13%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCCH--HHHHhHHHHHHhC-----CChHHHHHHHHHhHhhCCCC-hHHHHHHHHHHHH-cCCh
Q 015733          310 DFRASIECYTQFIDVGTMVSP--TAFARRSLSYLMS-----DMPQEALNDASQAQVISPVW-HMAAYLQAAALFA-LGKE  380 (401)
Q Consensus       310 ~~~~A~~~~~~ai~~~p~~~~--~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~-~~~~  380 (401)
                      ....|...+++||++||+ ..  .+|.-+|..|.+.     |+.++|.+.|++|++++|+. ..+++.+|..+.. .|++
T Consensus       178 ~l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             hHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            357899999999999998 43  4999999999996     99999999999999999975 9999999999988 5999


Q ss_pred             HHHHHHHHHHHccchhh
Q 015733          381 NEAQAALREASILENKK  397 (401)
Q Consensus       381 ~~A~~~~~~al~l~~~~  397 (401)
                      ++|.+.+++|+..+|..
T Consensus       257 ~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          257 AGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            99999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.46  E-value=8.4e-07  Score=65.98  Aligned_cols=72  Identities=10%  Similarity=-0.087  Sum_probs=63.8

Q ss_pred             hhhhhhhHhHhHHhhcCC---hHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH
Q 015733          293 QETLNSKKKGDVAFRHKD---FRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~---~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  365 (401)
                      .++..+...|..++-.++   .++|...+.+|++++|+ +..+++.+|..+++.|+|++|+..++++++.+|..+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            456677788888865544   89999999999999999 9999999999999999999999999999999998543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.45  E-value=1.1e-06  Score=86.19  Aligned_cols=97  Identities=14%  Similarity=0.028  Sum_probs=84.2

Q ss_pred             hhhhhhHhHhHHhhcC---ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCChHH
Q 015733          294 ETLNSKKKGDVAFRHK---DFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWHMA  366 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  366 (401)
                      ....+...|..+...|   ++++|+++|++|++.  . ++.+++++|.+|..    .+++++|+..+++|++.  .++.+
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  401 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G-EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAA  401 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHH
Confidence            3455667777777755   899999999999987  4 68899999999999    89999999999999886  47899


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHccch
Q 015733          367 AYLQAAALFA----LGKENEAQAALREASILEN  395 (401)
Q Consensus       367 ~~~~g~~~~~----~~~~~~A~~~~~~al~l~~  395 (401)
                      ++++|.+|..    .+++++|++.|++|++.++
T Consensus       402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            9999999998    8999999999999999983

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.44  E-value=3.4e-07  Score=89.54  Aligned_cols=102  Identities=9%  Similarity=-0.025  Sum_probs=87.2

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc-----CCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV-----GTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVI-----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----  359 (401)
                      +.-+..+.+.|..|...|+|++|+..|.++|++     .|+.  -+..++|+|.+|..+|+|++|+..+++|+++     
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            346777889999999999999999999999975     3330  3458999999999999999999999999965     


Q ss_pred             CCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 015733          360 SPVWH---MAAYLQAAALFALGKENEAQAALREASIL  393 (401)
Q Consensus       360 ~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~l  393 (401)
                      .|+++   +....++.++..++.|++|...|++|.+-
T Consensus       428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56665   56778999999999999999999998653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.43  E-value=7.1e-07  Score=86.71  Aligned_cols=95  Identities=9%  Similarity=-0.007  Sum_probs=76.6

Q ss_pred             hhhhHhHhHHhhcC---ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC----CChHHHHHHHHHhHhhCCCChHHHH
Q 015733          296 LNSKKKGDVAFRHK---DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS----DMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       296 ~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ..+...|..+...|   ++++|++.|.++++..+. .+..++++|.+|...    +++++|+..|++|.   |+++.+++
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~  252 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV  252 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            36677788888888   888888888888888888 777778888888665    78888888888887   88888888


Q ss_pred             HHHHH-H--HHcCChHHHHHHHHHHHccc
Q 015733          369 LQAAA-L--FALGKENEAQAALREASILE  394 (401)
Q Consensus       369 ~~g~~-~--~~~~~~~~A~~~~~~al~l~  394 (401)
                      ++|.+ +  ...+++++|++.|++|.+.+
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            88887 4  46788888888888887665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.38  E-value=9.2e-07  Score=71.38  Aligned_cols=82  Identities=13%  Similarity=-0.005  Sum_probs=71.4

Q ss_pred             hhhhhhHhHhHHhhcC---ChHHHHHHHHHHHhcC-CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          294 ETLNSKKKGDVAFRHK---DFRASIECYTQFIDVG-TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      ..+..++.|..+.+.+   +.++|+..+++.++.+ |....++++++|.+|+++|+|++|.++++++|+++|+|.+|...
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4566778888888877   7789999999999998 73268999999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 015733          370 QAAALF  375 (401)
Q Consensus       370 ~g~~~~  375 (401)
                      +-.+-.
T Consensus       111 k~~ie~  116 (152)
T 1pc2_A          111 ERLIDK  116 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.37  E-value=3e-06  Score=82.96  Aligned_cols=97  Identities=13%  Similarity=-0.046  Sum_probs=83.2

Q ss_pred             hhhhhhhHhHhHHhh----cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCCh
Q 015733          293 QETLNSKKKGDVAFR----HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      ..+..+...|..+..    .+++++|+++|.+|++.  . ++.+++++|.+|..    .+++++|+..+++|.+.  +++
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  147 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD  147 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            456677888888888    89999999999999875  4 67888999999988    88999999999998775  588


Q ss_pred             HHHHHHHHHHHH----cCChHHHHHHHHHHHccc
Q 015733          365 MAAYLQAAALFA----LGKENEAQAALREASILE  394 (401)
Q Consensus       365 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~  394 (401)
                      .+++.+|.+|..    .+++++|++.|+++++.+
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~  181 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            999999999988    889999999999998764

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.36  E-value=2.6e-07  Score=84.86  Aligned_cols=149  Identities=11%  Similarity=0.042  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHhhhCC------CeEEEeeee-----ccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           17 STYFIVSLVLIASMSS------FILLAVIFM-----FQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h------~niv~~~~~-----~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.+|+.++..+.+      |.++.....     ....|||+++|..+....  ...++..++..++.+++..+..||
T Consensus        54 ~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~~~--~~~l~~~~~~~~~~~l~~~la~LH  131 (304)
T 3sg8_A           54 STNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLL--LNNLPKQSQNQAAKDLARFLSELH  131 (304)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCHHH--HHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeECCccc--cccCCHHHHHHHHHHHHHHHHHHH
Confidence            4678899999988733      233333211     123489999986433211  124677778888888888888888


Q ss_pred             cC---------------------------------------------------------CCceeccCCCCCEEECC--CC
Q 015733           86 SK---------------------------------------------------------ERALYHDLNAYRIVFDD--DV  106 (401)
Q Consensus        86 ~~---------------------------------------------------------~~ivH~dlk~~Nill~~--~~  106 (401)
                      +.                                                         ..++|+|++|.||+++.  ..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~  211 (304)
T 3sg8_A          132 SINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNT  211 (304)
T ss_dssp             HSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTE
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCC
Confidence            51                                                         13699999999999998  45


Q ss_pred             CeEEecccCccccCCCCcccccccc---CCcccccc--Ccc------------CCCCcchhhHHHHHHHHhCCCCCCc
Q 015733          107 NPRLSCFGLMKNSRDGRSYSTNLAF---TPPEYLRT--GRV------------TPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus       107 ~~kl~Dfg~~~~~~~~~~~~~~~~y---~aPE~~~~--~~~------------~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      .+.|+||+.+...............   ..|+....  ..|            ....+.|++|.++|.+.+|..++..
T Consensus       212 ~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~~  289 (304)
T 3sg8_A          212 ICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWYE  289 (304)
T ss_dssp             EEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             EEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6789999988764432211111111   22322111  001            1125799999999999999876543

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.36  E-value=1.3e-06  Score=82.16  Aligned_cols=99  Identities=9%  Similarity=-0.039  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhCC-----CeEEEeeeec-----cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           18 TYFIVSLVLIASMSS-----FILLAVIFMF-----QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h-----~niv~~~~~~-----~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      +.+.+|+.++..+.+     |.++.++...     ...||||++|......  .-..++...+..++.+++..|..||+.
T Consensus        81 ~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~--~~~~l~~~~~~~~~~~l~~~La~LH~~  158 (359)
T 3dxp_A           81 HAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQ--SLPGMSPAERTAIYDEMNRVIAAMHTV  158 (359)
T ss_dssp             -CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCT--TCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCC--ccccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            577889999988863     4455555322     2359999998644211  123478888899999999999999961


Q ss_pred             ---------------------------------------------------------CCceeccCCCCCEEECCCCC--e
Q 015733           88 ---------------------------------------------------------ERALYHDLNAYRIVFDDDVN--P  108 (401)
Q Consensus        88 ---------------------------------------------------------~~ivH~dlk~~Nill~~~~~--~  108 (401)
                                                                               ..++|+|+++.|||++.++.  +
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~  238 (359)
T 3dxp_A          159 DYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVL  238 (359)
T ss_dssp             CTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEE
T ss_pred             CchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEE
Confidence                                                                     26899999999999997753  6


Q ss_pred             EEecccCccc
Q 015733          109 RLSCFGLMKN  118 (401)
Q Consensus       109 kl~Dfg~~~~  118 (401)
                      .|+||+.+..
T Consensus       239 ~viDwe~a~~  248 (359)
T 3dxp_A          239 AVLDWELSTL  248 (359)
T ss_dssp             EECCCTTCEE
T ss_pred             EEECcccccc
Confidence            8999998765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.32  E-value=2.2e-06  Score=68.83  Aligned_cols=79  Identities=16%  Similarity=0.040  Sum_probs=72.1

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH----cCChHHHH
Q 015733          309 KDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA----LGKENEAQ  384 (401)
Q Consensus       309 ~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~  384 (401)
                      +++++|++.|.++.+.... .+.    +|.+|...+.+++|++.+++|.+.  .++.+++++|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5789999999999998755 443    999999999999999999999987  799999999999999    89999999


Q ss_pred             HHHHHHHccc
Q 015733          385 AALREASILE  394 (401)
Q Consensus       385 ~~~~~al~l~  394 (401)
                      +.|++|.+.+
T Consensus        82 ~~~~~Aa~~g   91 (138)
T 1klx_A           82 QYYSKACGLN   91 (138)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHcCC
Confidence            9999999874

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.26  E-value=8.3e-07  Score=79.48  Aligned_cols=96  Identities=9%  Similarity=-0.129  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHhhhC-CC---eEEEeeeec--cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC---
Q 015733           17 STYFIVSLVLIASMS-SF---ILLAVIFMF--QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK---   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~-h~---niv~~~~~~--~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---   87 (401)
                      ...+.+|+.++..+. |.   .++.+....  ..+||||++|..+.....     +......++.+++.+|..||+.   
T Consensus        53 ~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~-----~~~~~~~~~~~l~~~l~~LH~~~~~  127 (263)
T 3tm0_A           53 TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE-----DEQSPEKIIELYAECIRLFHSIDIS  127 (263)
T ss_dssp             TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCC-----TTTCHHHHHHHHHHHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccC-----CcccHHHHHHHHHHHHHHHhCCCcc
Confidence            346889999998885 33   344444221  236999999864443211     1122347888999999999981   


Q ss_pred             -------------------------------------------------------CCceeccCCCCCEEECCCCCeEEec
Q 015733           88 -------------------------------------------------------ERALYHDLNAYRIVFDDDVNPRLSC  112 (401)
Q Consensus        88 -------------------------------------------------------~~ivH~dlk~~Nill~~~~~~kl~D  112 (401)
                                                                             ..++|+|++|.||+++++..+.|+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lID  207 (263)
T 3tm0_A          128 DCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFID  207 (263)
T ss_dssp             TCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECC
T ss_pred             cCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEE
Confidence                                                                   1489999999999998765567999


Q ss_pred             ccCcc
Q 015733          113 FGLMK  117 (401)
Q Consensus       113 fg~~~  117 (401)
                      |+.+.
T Consensus       208 we~a~  212 (263)
T 3tm0_A          208 LGRSG  212 (263)
T ss_dssp             CTTCE
T ss_pred             chhcc
Confidence            98653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.22  E-value=6.3e-06  Score=80.00  Aligned_cols=96  Identities=11%  Similarity=-0.110  Sum_probs=73.6

Q ss_pred             hhhhhhhhHhHhH-H--hhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-----ChHHHHHHHHHhHhhCCCC
Q 015733          292 MQETLNSKKKGDV-A--FRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-----MPQEALNDASQAQVISPVW  363 (401)
Q Consensus       292 ~~~a~~~~~~g~~-~--~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p~~  363 (401)
                      ......+...|.. +  ...+++++|+++|++|++.  . ++.+++++|.+|. .|     ++++|+..|++|.   +++
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~  317 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE  317 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC
Confidence            4556666777776 3  4678888888888888865  3 5778888888887 44     8888888888888   888


Q ss_pred             hHHHHHHHHHHHH----cCChHHHHHHHHHHHccc
Q 015733          364 HMAAYLQAAALFA----LGKENEAQAALREASILE  394 (401)
Q Consensus       364 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~  394 (401)
                      +.+++++|.+|..    ..++++|+..|++|.+.+
T Consensus       318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            8888888887776    348888888888887754

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.21  E-value=2e-06  Score=76.63  Aligned_cols=93  Identities=9%  Similarity=-0.111  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhhCCCe-----EEEeeeec--cccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--
Q 015733           18 TYFIVSLVLIASMSSFI-----LLAVIFMF--QIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE--   88 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~n-----iv~~~~~~--~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--   88 (401)
                      ..+..|+.++..+.+.+     ++.+....  ...||||++|..+. ...    .+   ...++.+++..|..||+..  
T Consensus        58 ~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-~~~----~~---~~~~~~~l~~~l~~lh~~~~~  129 (264)
T 1nd4_A           58 NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-SSH----LA---PAEKVSIMADAMRRLHTLDPA  129 (264)
T ss_dssp             SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT-TSC----CC---HHHHHHHHHHHHHHHTTSCGG
T ss_pred             hhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC-cCc----CC---HhHHHHHHHHHHHHHhCCCCC
Confidence            56788999998886543     33322111  14599999986554 221    12   2357788888888888751  


Q ss_pred             -------------------------------------------------------CceeccCCCCCEEECCCCCeEEecc
Q 015733           89 -------------------------------------------------------RALYHDLNAYRIVFDDDVNPRLSCF  113 (401)
Q Consensus        89 -------------------------------------------------------~ivH~dlk~~Nill~~~~~~kl~Df  113 (401)
                                                                             +++|+|++|.||++++++.+.|+||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~  209 (264)
T 1nd4_A          130 TCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDC  209 (264)
T ss_dssp             GCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCC
T ss_pred             CCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcc
Confidence                                                                   1899999999999987766679999


Q ss_pred             cCccc
Q 015733          114 GLMKN  118 (401)
Q Consensus       114 g~~~~  118 (401)
                      |.+..
T Consensus       210 ~~a~~  214 (264)
T 1nd4_A          210 GRLGV  214 (264)
T ss_dssp             TTCEE
T ss_pred             hhccc
Confidence            97643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3.2e-06  Score=80.89  Aligned_cols=100  Identities=6%  Similarity=0.021  Sum_probs=79.4

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCH-----------------HHHHhHHHHHHhCCChHHHHHHHHHhHh
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSP-----------------TAFARRSLSYLMSDMPQEALNDASQAQV  358 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~  358 (401)
                      ....++|..+.+.|+|++|++.|.++++..|. ..                 .++.++|.+|...|++++|++.+.++++
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSS-QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCC-SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567788888999999999999999998876 32                 3688999999999999999999999988


Q ss_pred             hCCCChHH------HHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          359 ISPVWHMA------AYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       359 ~~p~~~~~------~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +.+...++      ...+|.++...|++++|++.+++++.+...
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  127 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR  127 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            77665443      445677777788888888888888776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.12  E-value=1.3e-05  Score=65.03  Aligned_cols=93  Identities=11%  Similarity=-0.036  Sum_probs=76.6

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcC---CCC-----CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC---CC---
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVG---TMV-----SPTAFARRSLSYLMSDMPQEALNDASQAQVIS---PV---  362 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~---  362 (401)
                      .+++....++..|.|+.|+-..+.++.+.   |+.     .+.+++.+|.+++..|+|..|...|++||.+.   ++   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46777888999999999999999988664   321     13488999999999999999999999997542   11   


Q ss_pred             -------------------ChHHHHHHHHHHHHcCChHHHHHHHHH
Q 015733          363 -------------------WHMAAYLQAAALFALGKENEAQAALRE  389 (401)
Q Consensus       363 -------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~  389 (401)
                                         ..+..|..|.||..+|++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                               126889999999999999999999875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.11  E-value=1.3e-05  Score=62.30  Aligned_cols=87  Identities=9%  Similarity=0.015  Sum_probs=63.3

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHH---HHHHHHHhHhhC-C-CChHHHHHHHHHHHHcCChHHHH
Q 015733          310 DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQE---ALNDASQAQVIS-P-VWHMAAYLQAAALFALGKENEAQ  384 (401)
Q Consensus       310 ~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~  384 (401)
                      ....+.+.|.++++.++. ...+-++.|.++.+......   +|..++..++.+ | ..-+.+|.+|.+++++|+|++|+
T Consensus        16 ~l~~~~~~y~~e~~~~~~-s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            344566677777776665 67777787888777766666   777777777766 4 45677788888888888888888


Q ss_pred             HHHHHHHccchhh
Q 015733          385 AALREASILENKK  397 (401)
Q Consensus       385 ~~~~~al~l~~~~  397 (401)
                      +.++..|+++|.+
T Consensus        95 ~~~~~lL~~eP~n  107 (126)
T 1nzn_A           95 KYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            8888888887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.11  E-value=9.2e-06  Score=86.71  Aligned_cols=94  Identities=19%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCC--------------
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISP--------------  361 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------------  361 (401)
                      ..+...|..++..|+|++|+..|++|         ..|..+|.+|.++|+|++|++.+++|...++              
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence            46778999999999999999999996         3789999999999999999999999966554              


Q ss_pred             -----------CChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          362 -----------VWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       362 -----------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                                 .+++-+..++..|...|.|++|+..|+++|.+|+.+.
T Consensus      1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence                       2556677888899999999999999999999997654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.04  E-value=1.3e-05  Score=85.57  Aligned_cols=63  Identities=17%  Similarity=0.082  Sum_probs=59.2

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .+.+|+++|.++...|++++|+..|.+|     +++.+|++.|.++..+|+|++|++.|+.|.+.++.
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            6779999999999999999999999887     99999999999999999999999999999988743

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.99  E-value=3.4e-05  Score=70.21  Aligned_cols=96  Identities=11%  Similarity=-0.121  Sum_probs=52.0

Q ss_pred             hHhHhHHhhcCChHHHHHHHHHHHhcCC--CCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC----ChHHHHHH--
Q 015733          299 KKKGDVAFRHKDFRASIECYTQFIDVGT--MVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV----WHMAAYLQ--  370 (401)
Q Consensus       299 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~--  370 (401)
                      ...|..+...|++++|++.+.++|+.+|  . +.+++..++.+++++|+.+.|.+.++++.+.+|+    +-.....+  
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEG-TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            4555666666666666666666666654  4 5556666666666666666666666666666552    11222222  


Q ss_pred             HHHHHHcC--ChHHHHHHHHHHHccch
Q 015733          371 AAALFALG--KENEAQAALREASILEN  395 (401)
Q Consensus       371 g~~~~~~~--~~~~A~~~~~~al~l~~  395 (401)
                      |.+....|  ++.+|...|+++.+..|
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            32233333  55555555555554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.98  E-value=3.4e-05  Score=73.55  Aligned_cols=95  Identities=12%  Similarity=-0.025  Sum_probs=75.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..+...|..+.+.|+|++|++.|.+|     . ++..|...+.++...|+|+.|...... |...|++   ...+...
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~  216 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINY  216 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHH
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHH
Confidence            4467888888888888888998888888     3 567888888888888888888665553 4455544   4467788


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |...|++++|+..|++++.+|+.+.
T Consensus       217 Yek~G~~eEai~lLe~aL~le~ah~  241 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLERAHM  241 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred             HHHCCCHHHHHHHHHHHhCCcHHHH
Confidence            9999999999999999999997553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=3.6e-05  Score=73.48  Aligned_cols=99  Identities=10%  Similarity=0.024  Sum_probs=83.6

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCC-----CCHHHHHhHHHHHHhCCChHHHHHHHHHhHhh------CCCChHH
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTM-----VSPTAFARRSLSYLMSDMPQEALNDASQAQVI------SPVWHMA  366 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~  366 (401)
                      ....|..+...|+++.|+..|.++++..+.     ..+.++.++|.+|...|+|++|+..+++++..      .+....+
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  177 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV  177 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            444567777889999999999999976322     14678999999999999999999999999865      4455779


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          367 AYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +...|.+|..+|+|++|...|++++.+.+.
T Consensus       178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          178 HLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999988653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.84  E-value=1.4e-05  Score=76.09  Aligned_cols=87  Identities=16%  Similarity=0.083  Sum_probs=64.3

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      ..+...|..++..|+|++|...|+++         ..|.++|.|+.++|+|++|++.+++|     +++.+|...+.++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            38899999999999999999999987         36899999999999999999999999     58999999999999


Q ss_pred             HcCChHHHHHHHHHHHccchhh
Q 015733          376 ALGKENEAQAALREASILENKK  397 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      ..|+++.|..+..+ +.+.|.+
T Consensus       189 ~~~ef~lA~~~~l~-L~~~ad~  209 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHADE  209 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCHHH
T ss_pred             HcCcHHHHHHHHHH-HHhCHhh
Confidence            99999999877664 4355543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.82  E-value=5.8e-05  Score=68.69  Aligned_cols=91  Identities=9%  Similarity=-0.041  Sum_probs=76.2

Q ss_pred             HhHHhhcC--ChHHHHHHHHHHHhcCCCCCH--HHHHhHHHHHHhCCChHHHHHHHHHhHhh----------CCCChHHH
Q 015733          302 GDVAFRHK--DFRASIECYTQFIDVGTMVSP--TAFARRSLSYLMSDMPQEALNDASQAQVI----------SPVWHMAA  367 (401)
Q Consensus       302 g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~  367 (401)
                      |-..+..|  ++.+|+..|+++.+..|+ ..  ..+++   ++..+|++++|.+.++++++.          +|+++.++
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            43344445  999999999999888775 33  34444   899999999999999988877          59999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          368 YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       368 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++..+.+.+|+  +|.+.++++.+.+|++.
T Consensus       259 aN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          259 ANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999999999998  99999999999998764

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.73  E-value=6.4e-05  Score=64.11  Aligned_cols=138  Identities=11%  Similarity=0.014  Sum_probs=90.0

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCceeccCCCCCEEECCCCCeEEecccCccccCCCCccccccccC
Q 015733           54 FSNNFSGETQPMKWAMRLRVALHIAEALEYCT-SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFT  132 (401)
Q Consensus        54 l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH-~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~  132 (401)
                      |...+...+.||+++++|.++.|.+.+|.-+- .+ .-..+=+-|..|++..+|.|.+.+ +.+.        .....+.
T Consensus        35 L~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~-~~~~~i~~~~~i~l~~dG~V~f~~-~~s~--------~~~~~~~  104 (229)
T 2yle_A           35 LEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRR-QPRHRVRSAAQIRVWRDGAVTLAP-AADD--------AGEPPPV  104 (229)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCSGGGEEEETTSCEEECC-C------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcc-cCCceecCCcceEEecCCceeccc-cccc--------ccccCCC
Confidence            44445556789999999999999999988772 22 222334556889999999887774 1110        1123456


Q ss_pred             CccccccCccCCCCcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhccc----
Q 015733          133 PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQY----  208 (401)
Q Consensus       133 aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~----  208 (401)
                      +||... ...+.+.-|||||++||.-+--..|..                       -+..+++++.+||..|.+-    
T Consensus       105 ~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e~-----------------------eE~eLS~~LE~LL~~Mt~~~~d~  160 (229)
T 2yle_A          105 AGKLGY-SQCMETEVIESLGIIIYKALDYGLKEN-----------------------EERELSPPLEQLIDHMANTVEAD  160 (229)
T ss_dssp             --CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCTT-----------------------EEECCCHHHHHHHHHHTTCCC--
T ss_pred             Chhhcc-ccchHHHHHHHHHHHHHHHhhcCCCcc-----------------------cchhhCHHHHHHHHHHHhccccc
Confidence            788764 344667789999999999887665421                       1233456777888877655    


Q ss_pred             ---------------------CCCCCCCHHHHHHHHHc
Q 015733          209 ---------------------EPRERPNPRSLVTALVT  225 (401)
Q Consensus       209 ---------------------~p~~Rps~~~vl~~l~~  225 (401)
                                           .+..|+|+++|++.-..
T Consensus       161 ~~~DeG~~~~~eg~~d~~~~~~~~~~~sl~~Vi~~C~~  198 (229)
T 2yle_A          161 GSNDEGYEAAEEGLGDEDEKRKISAIRSYRDVMKLCAA  198 (229)
T ss_dssp             ------------------CCSCCCCCCSHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccCcCCHHHHHHHHHh
Confidence                                 34678899999876654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.68  E-value=0.00018  Score=55.80  Aligned_cols=81  Identities=10%  Similarity=-0.076  Sum_probs=66.6

Q ss_pred             hhhhhHhHhHHhhcCChHH---HHHHHHHHHhcC-CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRA---SIECYTQFIDVG-TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~---A~~~~~~ai~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      ....++.|-.+.+.++..+   +|..++..+..+ |...-+..+.+|..++++|+|++|.++++..|+++|+|.+|.-.+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445666667776666655   999999999887 522678999999999999999999999999999999999998877


Q ss_pred             HHHHH
Q 015733          371 AAALF  375 (401)
Q Consensus       371 g~~~~  375 (401)
                      ..+-.
T Consensus       115 ~~i~~  119 (126)
T 1nzn_A          115 RLIDK  119 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.63  E-value=0.0001  Score=68.49  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=66.0

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +..+..+...|..++-.|++++|+..+++|+.++|.  ..+|..+|.++...|++++|++.|++|+.++|.....++..+
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~  351 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIEN  351 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhC
Confidence            345556666777778889999999999999999975  678899999999999999999999999999998875444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.60  E-value=8.9e-05  Score=71.21  Aligned_cols=76  Identities=8%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc-----CCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV-----GTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVI-----  359 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----  359 (401)
                      +.-+..+.+.|..|...|+|++|+..|.+++++     .|+.  -+..++|+|.+|..+|+|++|+..+++|+++     
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            345677888999999999999999999999975     2330  3458999999999999999999999999975     


Q ss_pred             CCCChHHH
Q 015733          360 SPVWHMAA  367 (401)
Q Consensus       360 ~p~~~~~~  367 (401)
                      .|+++..-
T Consensus       417 G~~Hp~~~  424 (433)
T 3qww_A          417 GKDHPYIS  424 (433)
T ss_dssp             CTTCHHHH
T ss_pred             CCCChHHH
Confidence            57776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.59  E-value=8.3e-05  Score=71.43  Aligned_cols=85  Identities=9%  Similarity=-0.064  Sum_probs=67.7

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc-----CCCC--CHHHHHhHHHHHHhCCChHHHHHHHHHhHhh-----C
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDV-----GTMV--SPTAFARRSLSYLMSDMPQEALNDASQAQVI-----S  360 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~  360 (401)
                      ..+..+.+.|..+...|+|++|+..|.+++++     .|+.  -+..++|+|.+|..+|+|++|+..+++|+++     .
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG  406 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG  406 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence            45667888899999999999999999999965     2330  3458999999999999999999999999965     5


Q ss_pred             CCChH---HHHHHHHHHHHc
Q 015733          361 PVWHM---AAYLQAAALFAL  377 (401)
Q Consensus       361 p~~~~---~~~~~g~~~~~~  377 (401)
                      |+++.   ++.+++.+...+
T Consensus       407 ~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          407 REHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TTSHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHH
Confidence            77664   445566665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.47  E-value=0.00034  Score=62.42  Aligned_cols=79  Identities=10%  Similarity=-0.014  Sum_probs=63.6

Q ss_pred             HHHHH-hcCCCCCHHHHHhHHHHHHh---C--CC------hHHHHHHHHHhHhhCCC--ChHHHHHHHHHHHHc-----C
Q 015733          318 YTQFI-DVGTMVSPTAFARRSLSYLM---S--DM------PQEALNDASQAQVISPV--WHMAAYLQAAALFAL-----G  378 (401)
Q Consensus       318 ~~~ai-~~~p~~~~~~~~~~a~~~~~---~--~~------~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~-----~  378 (401)
                      +.+++ +.+|+ +.++++-.|.+...   .  |+      ...|...+++|++++|+  +..+|..+|..|...     |
T Consensus       140 ~~~~l~~~~~~-dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG  218 (301)
T 3u64_A          140 LHKVLSRCTRV-DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG  218 (301)
T ss_dssp             HHHHHTTCCGG-GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred             HHHHHHHcCcc-ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence            34455 44666 88877777776532   2  33      46788999999999999  566999999999996     9


Q ss_pred             ChHHHHHHHHHHHccchhh
Q 015733          379 KENEAQAALREASILENKK  397 (401)
Q Consensus       379 ~~~~A~~~~~~al~l~~~~  397 (401)
                      +.++|.+.|++|++++|+.
T Consensus       219 d~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             CHHHHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999964

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.42  E-value=0.0015  Score=51.50  Aligned_cols=77  Identities=6%  Similarity=-0.141  Sum_probs=62.1

Q ss_pred             hHhHhHHhhcC---ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          299 KKKGDVAFRHK---DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       299 ~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      ++.|-.+.+..   +-..+|..++..+...|...-+..+.+|..++++|+|++|.++++..|+++|+|.+|.-.+..+-.
T Consensus        43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A           43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            34444444333   455799999999998886477899999999999999999999999999999999998877666543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.39  E-value=0.001  Score=51.75  Aligned_cols=67  Identities=7%  Similarity=-0.114  Sum_probs=58.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          310 DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       310 ~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      +...+|..++..+..+|...-+.++.+|..++++|+|++|.++++..+++.|+|.+|.-.+..+-..
T Consensus        58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            5568999999999988853678999999999999999999999999999999999998877665544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.36  E-value=0.00046  Score=53.73  Aligned_cols=85  Identities=8%  Similarity=-0.034  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCC---hHHHHHHHHHhHhhCCC-ChHHHHHHHHHHHHcCChHHHHHHH
Q 015733          312 RASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM---PQEALNDASQAQVISPV-WHMAAYLQAAALFALGKENEAQAAL  387 (401)
Q Consensus       312 ~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~  387 (401)
                      ....+.|.+-+  .+.+.+..-++.|-++.+..+   ..++|..++..++..|. .-+.+|.+|.+++++|+|++|++..
T Consensus        24 ~~l~~qy~~E~--~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           24 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHTT--GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34445555544  344467888888988888754   45799999999999984 5789999999999999999999999


Q ss_pred             HHHHccchhhh
Q 015733          388 REASILENKKS  398 (401)
Q Consensus       388 ~~al~l~~~~~  398 (401)
                      +..|+++|.+.
T Consensus       102 d~lL~~eP~N~  112 (134)
T 3o48_A          102 DTLFEHERNNK  112 (134)
T ss_dssp             HHHHTTCTTCH
T ss_pred             HHHHhhCCCCH
Confidence            99999999764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.19  E-value=0.00099  Score=60.83  Aligned_cols=100  Identities=12%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHhhhCCC------eEEEeeee---ccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSF------ILLAVIFM---FQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~------niv~~~~~---~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...+..|+.++..+.+.      .++.+...   ....||||++|.......  -..++......++.++...|..||+.
T Consensus        53 ~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~--~~~l~~~~~~~~~~~lg~~La~LH~~  130 (306)
T 3tdw_A           53 ADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDG--MAVLPDDAKDRLALQLAEFMNELSAF  130 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHHHH--HTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECchhh--hhhCCHHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999988752      33333321   123599999986433210  01234444555555555555555532


Q ss_pred             -----------------------------------------------------------CCceeccCCCCCEEECC---C
Q 015733           88 -----------------------------------------------------------ERALYHDLNAYRIVFDD---D  105 (401)
Q Consensus        88 -----------------------------------------------------------~~ivH~dlk~~Nill~~---~  105 (401)
                                                                                 ..++|+|++|.||+++.   +
T Consensus       131 ~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~  210 (306)
T 3tdw_A          131 PVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQ  210 (306)
T ss_dssp             CHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSS
T ss_pred             CcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCC
Confidence                                                                       13599999999999997   4


Q ss_pred             CCe-EEecccCccc
Q 015733          106 VNP-RLSCFGLMKN  118 (401)
Q Consensus       106 ~~~-kl~Dfg~~~~  118 (401)
                      +.+ .|+||+.+..
T Consensus       211 ~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          211 TPLTGIIDFGDAAI  224 (306)
T ss_dssp             CCEEEECCCTTCEE
T ss_pred             CceEEEEehhhcCC
Confidence            554 8999987654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.14  E-value=0.0016  Score=51.41  Aligned_cols=71  Identities=8%  Similarity=-0.011  Sum_probs=62.4

Q ss_pred             CCHHHHHhHHHHHHhCCCh---HHHHHHHHHhHhhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          328 VSPTAFARRSLSYLMSDMP---QEALNDASQAQVISP-VWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       328 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +....-++.|-++.+..+.   .++|..++..++..| ..-+.+|.+|..++++|+|++|.+..+..|+++|.+.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            3688899999999887554   579999999999888 4668999999999999999999999999999999764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.11  E-value=0.005  Score=58.14  Aligned_cols=99  Identities=10%  Similarity=0.029  Sum_probs=82.1

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-------C--------------HHHHHhHHHHHHhCCChHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-------S--------------PTAFARRSLSYLMSDMPQEALND  352 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-------~--------------~~~~~~~a~~~~~~~~~~~A~~~  352 (401)
                      ....+...|......|+.+.|++.+.+|+.+...+       .              ..+...++.++...|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34455666777777899999999999999875331       0              01445667788899999999999


Q ss_pred             HHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 015733          353 ASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASI  392 (401)
Q Consensus       353 ~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  392 (401)
                      +.+++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.69  E-value=0.0087  Score=47.57  Aligned_cols=103  Identities=12%  Similarity=-0.066  Sum_probs=80.8

Q ss_pred             hhhhhHhHhHHhhcCCh------HHHHHHHHHHHhcCCCCC-------HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCC
Q 015733          295 TLNSKKKGDVAFRHKDF------RASIECYTQFIDVGTMVS-------PTAFARRSLSYLMSDMPQEALNDASQAQVISP  361 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~------~~A~~~~~~ai~~~p~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  361 (401)
                      -+.|+.-....-+.|+.      +.-++.|++|+..-|...       .-+|.+-|.- ..++|.++|-+.|+.|+.+..
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence            34445555555555777      788899999998877521       1244444433 456999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          362 VWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       362 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++++.|...|.--...|+.+.|.+.+.+|+.+.|+..
T Consensus        92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            9999999999999999999999999999999988643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.66  E-value=0.0067  Score=61.53  Aligned_cols=81  Identities=10%  Similarity=-0.049  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHH-HHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015733          312 RASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEAL-NDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREA  390 (401)
Q Consensus       312 ~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  390 (401)
                      +.....|++||...|. .+.+|...|..+...|+.++|. ..+++|+...|.....|+.++......|++++|.+.|+++
T Consensus       326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456789999999999 9999999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             Hcc
Q 015733          391 SIL  393 (401)
Q Consensus       391 l~l  393 (401)
                      ++.
T Consensus       405 l~~  407 (679)
T 4e6h_A          405 IDR  407 (679)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.62  E-value=0.0096  Score=60.40  Aligned_cols=98  Identities=7%  Similarity=-0.072  Sum_probs=72.4

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhc-CCCCCHHHHHhHHHHHHhCC-ChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDV-GTMVSPTAFARRSLSYLMSD-MPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      .|...+....+.|+.+.|...|.+|++. .+. ...+|...|..-...+ +++.|.+.|+.+++..|+++..+...+...
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3555555556677788888888888877 333 4566766666665654 488888888888888888888887778877


Q ss_pred             HHcCChHHHHHHHHHHHccch
Q 015733          375 FALGKENEAQAALREASILEN  395 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~  395 (401)
                      ...|+.+.|...|++|++..+
T Consensus       515 ~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          515 IYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHTCHHHHHHHHHHHTTTSS
T ss_pred             HhCCCHHHHHHHHHHHHHhcC
Confidence            778888888888888887765

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.40  E-value=0.0051  Score=54.69  Aligned_cols=29  Identities=14%  Similarity=0.082  Sum_probs=24.8

Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      ++|+|+.+.|||+++++.+-|+||+.+..
T Consensus       195 l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          195 VTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEcCCCCCCeEEEECCeEEEEEECccccc
Confidence            58999999999999877777999987643

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.36  E-value=0.011  Score=54.86  Aligned_cols=30  Identities=10%  Similarity=0.103  Sum_probs=25.0

Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccc
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      .++|+|+++.||+++++..+.|+||+.+..
T Consensus       223 ~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          223 VLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             EEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             eEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            689999999999999644578999987643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.009  Score=60.85  Aligned_cols=59  Identities=12%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             HHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015733          332 AFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREA  390 (401)
Q Consensus       332 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  390 (401)
                      ++.--+..++..|+|+-|++.+++|+..-|.....|+.++.+|..+|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            55555777788999999999999999999999999999999999999999999888766

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.74  E-value=0.02  Score=46.42  Aligned_cols=64  Identities=11%  Similarity=-0.070  Sum_probs=53.9

Q ss_pred             HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH---------HHHHHHHHHHHcCChHHHHHHHHHHHccc
Q 015733          331 TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM---------AAYLQAAALFALGKENEAQAALREASILE  394 (401)
Q Consensus       331 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~g~~~~~~~~~~~A~~~~~~al~l~  394 (401)
                      .++..-...++..|.|+.|+-.++.++.+..+++.         +++.+|.+++..++|..|...|++||++-
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            35556667788999999999999998876544444         88999999999999999999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.65  E-value=0.13  Score=50.06  Aligned_cols=97  Identities=8%  Similarity=0.017  Sum_probs=80.3

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCC-ChHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPV-WHMAAYLQAAALF  375 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~  375 (401)
                      .+...-..+.+.|++++|.+.|++..+..-.++...|+.+=.+|.+.|+.++|.+.+++..+..-. +...|..+-.+|.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            344556678899999999999999887643335889999999999999999999999998865332 5667888899999


Q ss_pred             HcCChHHHHHHHHHHHcc
Q 015733          376 ALGKENEAQAALREASIL  393 (401)
Q Consensus       376 ~~~~~~~A~~~~~~al~l  393 (401)
                      ..|+.++|.+.|++.-+.
T Consensus       187 ~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHh
Confidence            999999999999986543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.50  E-value=0.016  Score=53.26  Aligned_cols=30  Identities=3%  Similarity=0.005  Sum_probs=26.7

Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCcc
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMK  117 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~  117 (401)
                      ..++|+|+++.|||++.++.+.|+||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            379999999999999888889999998754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.48  E-value=0.19  Score=40.76  Aligned_cols=94  Identities=11%  Similarity=-0.034  Sum_probs=73.5

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhH--hh--------------
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ--VI--------------  359 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~--------------  359 (401)
                      +.-.-.+..++-+|+|..|+-.+.+   +  + -.++.+..+.||.++++|..|+...+..+  ++              
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~---l--N-T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK---L--N-TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT---C--C-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh---c--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            4445567788899999988875542   2  3 45677777999999999999999999998  22              


Q ss_pred             -CCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          360 -SPVWHM-AAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       360 -~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                       +|.+-+ .+..+|..+.+.|+.+||+..|......++
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence             233443 466789999999999999999999888775

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.03  Score=56.98  Aligned_cols=59  Identities=7%  Similarity=0.032  Sum_probs=53.6

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHh
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQA  356 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  356 (401)
                      -+..++.-+..+|+|+.|+++-.+|+..-|. ....|+.++.||..+|+|+.|+-.++-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4566778888999999999999999999999 9999999999999999999999876655

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.14  E-value=0.088  Score=51.06  Aligned_cols=79  Identities=9%  Similarity=-0.016  Sum_probs=71.6

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      -+...|+...-...+..|..+|.+|+.+.|+ +...|+.+|......|+.-+|+-+|-+++....-++.+.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3566788887788899999999999999999 999999999999999999999999999998888899999998888765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.97  E-value=0.24  Score=43.42  Aligned_cols=93  Identities=8%  Similarity=-0.014  Sum_probs=0.0

Q ss_pred             HhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHH---------------
Q 015733          302 GDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMA---------------  366 (401)
Q Consensus       302 g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------------  366 (401)
                      ...+++.|+.++|++.....|+.+|. ++.....+-..+.-.|+++.|.+.++.+.+++|+....               
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~   82 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   82 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH


Q ss_pred             --------------------HHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          367 --------------------AYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       367 --------------------~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                                          ....+......|+.++|.+.-.+|++.-|
T Consensus        83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap  131 (273)
T 1zbp_A           83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  131 (273)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.77  E-value=0.097  Score=47.16  Aligned_cols=29  Identities=10%  Similarity=-0.078  Sum_probs=24.0

Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccc
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      .++|+|+.+.||+ ..++.+.++||..+..
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            4799999999999 5567789999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-22
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-22
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-21
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	9e-21
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-20
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-20
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-20
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-20
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-20
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-20
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	9e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-19
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-19
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	9e-19
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-18
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-18
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	6e-18
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-18
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-17
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-17
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-17
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-16
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-15
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-14
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-13
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-13
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-13
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-13
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-13
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	7e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-12
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-12
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-12
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-11
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	9e-11
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-10
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-10
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-09
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-06
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-06
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-04

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (229), Expect = 6e-22
 Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 10/195 (5%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           +  +            Q +   + L +A  I+ A+EY   K   ++ DL A   +  ++ 
Sbjct: 94  FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF-IHRDLAARNCLVGENH 152

Query: 107 NPRLSCFGLMKNSRDGRSYST-----NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG 161
             +++ FGL +        +       + +T PE L   + + +S +++FG LL ++ + 
Sbjct: 153 LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATY 212

Query: 162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT 221
               P   +DL     +  L +     +       ++  L   C Q+ P +RP+   +  
Sbjct: 213 GM-SPYPGIDL---SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

Query: 222 ALVTLQKDTEVPSHV 236
           A  T+ +++ +   V
Sbjct: 269 AFETMFQESSISDEV 283

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.6 bits (229), Expect = 9e-22
 Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 21/187 (11%)

Query: 48  EFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVN 107
                T +   S    P+  A +L +A  +A  + Y + + + ++ DL     +  +++ 
Sbjct: 120 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLVGENMV 178

Query: 108 PRLSCFGLMKNSRDGRSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG 161
            +++ FGL +N      Y  +      + + PPE +   R T ES ++++G +L ++ S 
Sbjct: 179 VKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY 238

Query: 162 KHIP-----PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNP 216
              P         +  +RD NI    ++C           EL  L   C    P +RP+ 
Sbjct: 239 GLQPYYGMAHEEVIYYVRDGNILACPENCPL---------ELYNLMRLCWSKLPADRPSF 289

Query: 217 RSLVTAL 223
            S+   L
Sbjct: 290 CSIHRIL 296

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 39/231 (16%), Positives = 88/231 (38%), Gaps = 21/231 (9%)

Query: 12  MIRLQSTYFIVSLVLIASMSSFILLAVIFM-------FQIPSYEFHCLTFSNNFSGETQP 64
           + +L     I++L+       ++ LA+ +        F   S            +     
Sbjct: 64  LCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST 123

Query: 65  MKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRS 124
           +     L  A  +A  ++Y + K + ++ DL A  I+  ++   +++ FGL +       
Sbjct: 124 LSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 182

Query: 125 YSTN---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTL 181
            +     + +   E L     T  S ++S+G LL +++S    P               L
Sbjct: 183 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY-------CGMTCAEL 235

Query: 182 TDSCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD 229
            +   +G   +   +   E+  L  +C + +P ERP+   ++ +L  + ++
Sbjct: 236 YEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 286

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 9e-21
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 41  MFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRI 100
           ++ +  Y               + ++    + +A  IA  + Y       ++ DL A  I
Sbjct: 86  IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANI 144

Query: 101 VFDDDVNPRLSCFGLMKNSRDGRSYSTN-----LAFTPPEYLRTGRVTPESVMYSFGTLL 155
           +  +++  +++ FGL +   D    +       + +T PE    GR T +S ++SFG LL
Sbjct: 145 LVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILL 204

Query: 156 LDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
            +L +   +P       + +R +    +         +    L  L  +C + EP ERP 
Sbjct: 205 TELTTKGRVPYPG----MVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPT 260

Query: 216 PRSLVTAL 223
              L   L
Sbjct: 261 FEYLQAFL 268

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 9e-21
 Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 10/169 (5%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
                +    L +   + EA+EY  SK + L+ DL A   + +D    ++S FGL +   
Sbjct: 93  MRHRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 151

Query: 121 DGRSYSTN-----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
           D    S+      + ++PPE L   + + +S +++FG L+ ++ S   +P         +
Sbjct: 152 DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER----FTN 207

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALV 224
                     L          ++  +   C   +  ERP  + L++ ++
Sbjct: 208 SETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL 256

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 35/179 (19%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGL--MKNSR 120
              +    + +A   A+ ++Y  +K   ++ DL +  I   +D+  ++  FGL  +K+  
Sbjct: 99  TKFEMIKLIDIARQTAQGMDYLHAK-SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW 157

Query: 121 DGRSYSTNLAFTP----PEYLRT---GRVTPESVMYSFGTLLLDLLSGK----HIPPSHA 169
            G      L+ +     PE +R       + +S +Y+FG +L +L++G+    +I     
Sbjct: 158 SGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ 217

Query: 170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
           +  +  R   +   S +           + RL + CL+ +  ERP    ++ ++  L +
Sbjct: 218 IIFMVGRGYLSPDLSKVRSNCPK----AMKRLMAECLKKKRDERPLFPQILASIELLAR 272

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 1e-20
 Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 10/173 (5%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           +         L + L + E + Y       ++ DL A   +  ++   ++S FG+ +   
Sbjct: 94  QRGLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGENQVIKVSDFGMTRFVL 152

Query: 121 DGRSYSTN-----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
           D +  S+      + +  PE     R + +S ++SFG L+ ++ S   IP  +  +    
Sbjct: 153 DDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV 212

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
            +I     +           T + ++ + C +  P +RP    L+  L  + +
Sbjct: 213 EDIS----TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 2e-20
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 22/224 (9%)

Query: 12  MIRLQSTYFIVSLVLIASMSSFILLAVIFMFQIPSYEF-HCLTFSNNFSGETQPMKWAMR 70
           +++  + + +V L+ + S     L+ +  M +     +   L  +   +    P   +  
Sbjct: 76  VMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 135

Query: 71  LRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-- 128
           +++A  IA+ + Y  +  + ++ DL A   +  +D   ++  FG+ ++  +   Y     
Sbjct: 136 IQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 194

Query: 129 ----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQ 179
               + +  PE L+ G  T  S ++SFG +L ++ +    P         L  + +  + 
Sbjct: 195 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL 254

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
              D+C +          L  L   C QY P+ RP+   +++++
Sbjct: 255 DKPDNCPD---------MLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 2e-20
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKN-SRD 121
             +     L+ +L + EA+EY       ++ DL A  ++  +D   ++S FGL K  S  
Sbjct: 98  SVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 156

Query: 122 GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDR 176
             +    + +T PE LR  + + +S ++SFG LL ++ S   +P         +  +   
Sbjct: 157 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG 216

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK 228
                 D C            +  +   C   +   RP+   L   L  ++ 
Sbjct: 217 YKMDAPDGCPP---------AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 259

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 2e-20
 Identities = 38/216 (17%), Positives = 78/216 (36%), Gaps = 32/216 (14%)

Query: 20  FIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAE 79
           +IV ++ I    S++L+           E   L   N +  + + +K    + +   ++ 
Sbjct: 69  YIVRMIGICEAESWMLV----------MEMAELGPLNKYLQQNRHVKDKNIIELVHQVSM 118

Query: 80  ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN-------LAFT 132
            ++Y       ++ DL A  ++       ++S FGL K  R   +Y          + + 
Sbjct: 119 GMKYLEES-NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

Query: 133 PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDLIRDRNIQTLTDSCLE 187
            PE +   + + +S ++SFG L+ +  S    P      S    ++           C  
Sbjct: 178 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPR 237

Query: 188 GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
                    E+  L + C  Y+   RP   ++   L
Sbjct: 238 ---------EMYDLMNLCWTYDVENRPGFAAVELRL 264

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 3e-20
 Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 11/177 (6%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMK--N 118
               +     L   + IA+ + Y   + R ++ DL A  ++     + +++ FGL K   
Sbjct: 104 HKDNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 162

Query: 119 SRDGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIR 174
           + +   ++            E +     T +S ++S+G  + +L++    P     D I 
Sbjct: 163 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY----DGIP 218

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTE 231
              I ++ +             ++  +  +C   +   RP  R L+     + +D +
Sbjct: 219 ASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQ 275

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 6e-20
 Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 10/169 (5%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           +   + +   L  A  +A+ +E+   K   ++ DL A  ++       ++  FGL ++  
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKVVKICDFGLARDIM 215

Query: 121 DGRSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIR 174
              +Y         + +  PE L  G  T +S ++S+G LL ++ S    P      +  
Sbjct: 216 SDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP---GIPV 272

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
           D N   L  +  +         E+  +   C  ++ R+RP+  +L + L
Sbjct: 273 DANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 9e-20
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 56  NNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYH----DLNAYRIVFDDDVNPRLS 111
              + E Q +     LRV   +  AL+ C  +    +     DL    +  D   N +L 
Sbjct: 97  TKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG 156

Query: 112 CFGLMKNSRDGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKH---- 163
            FGL +      S++     TP    PE +       +S ++S G LL +L +       
Sbjct: 157 DFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 216

Query: 164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
                    IR+   + +     +         EL  + +R L  +   RP+   ++
Sbjct: 217 FSQKELAGKIREGKFRRIPYRYSD---------ELNEIITRMLNLKDYHRPSVEEIL 264

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 1e-19
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 9/162 (5%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           +               +A AL YC SK R ++ D+    ++       +++ FG   ++ 
Sbjct: 99  KLSKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLGSAGELKIADFGWSVHAP 157

Query: 121 DGRSYSTN--LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
             R  +    L + PPE +       +  ++S G L  + L GK    ++       R  
Sbjct: 158 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 217

Query: 179 QTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
           +      +E  F          L SR L++ P +RP  R ++
Sbjct: 218 R------VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVL 253

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 5e-19
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 47  YEF--HCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDD 104
            E+  +        +     +     L +A  IAE + +   +   ++ DL A  I+  D
Sbjct: 86  TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILVSD 144

Query: 105 DVNPRLSCFGLMKNSRDGRSYSTN-----LAFTPPEYLRTGRVTPESVMYSFGTLLLDLL 159
            ++ +++ FGL +   D    +       + +T PE +  G  T +S ++SFG LL +++
Sbjct: 145 TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 204

Query: 160 SGKHIP-----PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
           +   IP         +  +         D+C E         EL +L   C +  P +RP
Sbjct: 205 THGRIPYPGMTNPEVIQNLERGYRMVRPDNCPE---------ELYQLMRLCWKERPEDRP 255

Query: 215 NPRSLVTAL 223
               L + L
Sbjct: 256 TFDYLRSVL 264

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 9e-19
 Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 14/175 (8%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR 123
                  + +   IA  ++Y       ++ DL A  I+ + ++  ++S FGL +   D  
Sbjct: 124 QFTVIQLVGMLRGIAAGMKYLADM-NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 182

Query: 124 SYSTN---------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIR 174
           S  T          + +T PE ++  + T  S ++S+G ++ +++S    P       + 
Sbjct: 183 SDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD----MT 238

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD 229
           ++++    +         D  + L +L   C Q +   RP    +V  L  + ++
Sbjct: 239 NQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN 293

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 2e-18
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 19/227 (8%)

Query: 12  MIRLQSTYFIVSLVLIASMSSFILLAVIFM---------FQIPSYEFHCLTFSNNFSGET 62
           +  L +   IV+L+   ++    L+   +           +         T       + 
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             +     L  +  +A+ + +  SK   ++ DL A  I+       ++  FGL ++ ++ 
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 123 RSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
            +Y         + +  PE +     T ES ++S+G  L +L S    P      +  D 
Sbjct: 199 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG---MPVDS 255

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL 223
               +               E+  +   C   +P +RP  + +V  +
Sbjct: 256 KFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI 302

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 3e-18
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 40/199 (20%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           +   +   +  +V++ + + L Y   K + ++ D+    I+ +     +L  FG+     
Sbjct: 97  KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 156

Query: 121 DGRSYST--NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH-IPPSHALDLIRDRN 177
           D  + S     ++  PE L+    + +S ++S G  L+++  G++ IPP  A +L     
Sbjct: 157 DSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFG 216

Query: 178 IQTLTDSCLEGQFSSDEGT-------------------------------------ELVR 200
            Q   D+          G                                      E   
Sbjct: 217 CQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQD 276

Query: 201 LASRCLQYEPRERPNPRSL 219
             ++CL   P ER + + L
Sbjct: 277 FVNKCLIKNPAERADLKQL 295

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 3e-18
 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 19/180 (10%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           ET        +   L +A+ +++  SK + ++ DL A   + D+    +++ FGL ++  
Sbjct: 123 ETHNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 181

Query: 121 DGRSYSTN--------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDL 172
           D    S +        + +   E L+T + T +S ++SFG LL +L++    P       
Sbjct: 182 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP----- 236

Query: 173 IRDRNIQTLTDSCLEGQ---FSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD 229
             D N   +T   L+G+           L  +  +C   +   RP+   LV+ +  +   
Sbjct: 237 --DVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 294

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.0 bits (202), Expect = 5e-18
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
            E+   + S+      +P++      V     + L Y  S    ++ D+ A  I+  +  
Sbjct: 94  MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSEPG 152

Query: 107 NPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKH 163
             +L  FG         S+     +  PE +     G+   +  ++S G   ++L   K 
Sbjct: 153 LVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 212

Query: 164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
              +           Q  + +   G +S             CLQ  P++RP    L+
Sbjct: 213 PLFNMNAMSALYHIAQNESPALQSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLL 265

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 6e-18
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 10/170 (5%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             +     +  +  +A+ +E+  S+ + ++ DL A  I+  +    ++  FGL ++    
Sbjct: 129 DFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 187

Query: 123 RSYSTN------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
             Y         L +  PE +     T +S ++SFG LL ++ S    P      +  D 
Sbjct: 188 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP---GVKIDE 244

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL 226
                       +       E+ +    C   EP +RP    LV  L  L
Sbjct: 245 EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 6e-18
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 26/192 (13%)

Query: 60  GETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNS 119
           G+ + +  +    +   ++  ++Y   K   ++ DL A  ++  +    ++S FGL K  
Sbjct: 101 GKREEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVNRHYAKISDFGLSKAL 159

Query: 120 RDGRSYSTN-------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PS 167
               SY T        L +  PE +   + +  S ++S+G  + + LS    P       
Sbjct: 160 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP 219

Query: 168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTAL---- 223
             +  I           C           EL  L S C  Y+  +RP+  ++   +    
Sbjct: 220 EVMAFIEQGKRMECPPECPP---------ELYALMSDCWIYKWEDRPDFLTVEQRMRACY 270

Query: 224 VTLQKDTEVPSH 235
            +L    E   H
Sbjct: 271 YSLASKVEGHHH 282

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 7e-18
 Identities = 34/193 (17%), Positives = 75/193 (38%), Gaps = 13/193 (6%)

Query: 47  YEFHCLTFSNNFSGETQPM-KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDD 105
            E+      + F  E          + +   IA  ++Y  +    ++ DL A  I+ + +
Sbjct: 88  TEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILVNSN 146

Query: 106 VNPRLSCFGLMKNSRDGRSYSTN-------LAFTPPEYLRTGRVTPESVMYSFGTLLLDL 158
           +  ++S FGL +   D    +         + +T PE +   + T  S ++SFG ++ ++
Sbjct: 147 LVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEV 206

Query: 159 LSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS 218
           ++    P       + +  +    +         D  + + +L  +C Q E   RP    
Sbjct: 207 MTYGERPYWE----LSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFAD 262

Query: 219 LVTALVTLQKDTE 231
           +V+ L  L +  +
Sbjct: 263 IVSILDKLIRAPD 275

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 3e-17
 Identities = 25/204 (12%), Positives = 56/204 (27%), Gaps = 37/204 (18%)

Query: 63  QPMKWAMRLRVALHIAEALEYC-------TSKERALYHDLNAYRIVFDDDVNPRLSCFGL 115
             +     +++AL  A  L +          K    + DL +  I+   +    ++  GL
Sbjct: 95  YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154

Query: 116 MKNSRDGRSY----STNLAFTP----PEYLRT------GRVTPESVMYSFGTLLLDLLSG 161
                           +   T     PE L              + +Y+ G +  ++   
Sbjct: 155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR 214

Query: 162 KHIPPSH---------------ALDLIRDRNIQTLTDSCLEGQFSSDEGT-ELVRLASRC 205
             I   H               +++ +R    +      +  ++ S E    + ++   C
Sbjct: 215 CSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMREC 274

Query: 206 LQYEPRERPNPRSLVTALVTLQKD 229
                  R     +   L  L + 
Sbjct: 275 WYANGAARLTALRIKKTLSQLSQQ 298

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 4e-17
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYH-DLNAYRIVFDD-DVNPRLSCFGLMKN 118
             + MK  +       I + L++  ++   + H DL    I       + ++   GL   
Sbjct: 105 RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 164

Query: 119 SRDGRSYST--NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
            R   + +      F  PE     +      +Y+FG  +L++ + ++ P S   +    +
Sbjct: 165 KRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEY-PYSECQN--AAQ 220

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV 220
             + +T       F      E+  +   C++    ER + + L+
Sbjct: 221 IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 6e-17
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             +  A  +  A  ++ AL Y  SK R ++ D+ A  ++   +   +L  FGL +   D 
Sbjct: 103 YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 161

Query: 123 RSYSTNLAFTPPEY-----LRTGRVTPESVMYSFGTLLLDLLSGKHIP-----PSHALDL 172
             Y  +    P ++     +   R T  S ++ FG  + ++L     P      +  +  
Sbjct: 162 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGR 221

Query: 173 IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKDTEV 232
           I +     +  +C            L  L ++C  Y+P  RP    L   L T+ ++ + 
Sbjct: 222 IENGERLPMPPNCPP---------TLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 272

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 2e-16
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 11/160 (6%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             M      R    +   + Y        + D+    ++ D+  N ++S FGL    R  
Sbjct: 98  IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 156

Query: 123 RSYSTN------LAFTPPEYLRTGRVTPESV-MYSFGTLLLDLLSGKHIPPSHALDLIRD 175
                       L +  PE L+      E V ++S G +L  +L+G+      +      
Sbjct: 157 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 216

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
            + +         +        L+    + L   P  R  
Sbjct: 217 SDWKEKKTYLNPWKKIDSAPLALLH---KILVENPSARIT 253

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 5e-16
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
           +P+  +    V     +AL Y     + ++ DL A  I+F  D + +L+ FG+   +   
Sbjct: 105 RPLTESQIQVVCKQTLDALNYLHDN-KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT 163

Query: 123 RSYST----NLAFTPPEYLRT-----GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI 173
                       +  PE +            ++ ++S G  L+++   +  PP H L+ +
Sbjct: 164 IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIE--PPHHELNPM 221

Query: 174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
           R    +            S   +       +CL+     R     L
Sbjct: 222 RVLL-KIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL 266

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 9e-16
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 30  MSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER 89
            S   L   +   + P  E+      N      + +     +  A  +A  +EY  SK +
Sbjct: 101 ASKGNLREYLQARRPPGLEYSY----NPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-K 155

Query: 90  ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN------LAFTPPEYLRTGRVT 143
            ++ DL A  ++  +D   +++ FGL ++      Y         + +  PE L     T
Sbjct: 156 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 215

Query: 144 PESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLAS 203
            +S ++SFG LL ++ +     P   + +     +  L          S+   EL  +  
Sbjct: 216 HQSDVWSFGVLLWEIFTLGG-SPYPGVPV---EELFKLLKEGHRMDKPSNCTNELYMMMR 271

Query: 204 RCLQYEPRERPNPRSLVTAL 223
            C    P +RP  + LV  L
Sbjct: 272 DCWHAVPSQRPTFKQLVEDL 291

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 2e-15
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 11/174 (6%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
                      R A+ +AE + Y  SK   ++ DL A  ++       ++  FGLM+   
Sbjct: 104 HQGHFLLGTLSRYAVQVAEGMGYLESKRF-IHRDLAARNLLLATRDLVKIGDFGLMRALP 162

Query: 121 DGRSYSTN-------LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI 173
               +           A+  PE L+T   +  S  + FG  L ++ +    P      L 
Sbjct: 163 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI---GLN 219

Query: 174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ 227
             + +  +           D   ++  +  +C  ++P +RP   +L   L+  Q
Sbjct: 220 GSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 273

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             M       V     +ALE+  S  + ++ D+ +  I+   D + +L+ FG        
Sbjct: 111 TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169

Query: 123 RSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGKH----IPPSHALDLIR 174
           +S  + +  TP    PE +      P+  ++S G + ++++ G+       P  AL LI 
Sbjct: 170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIA 229

Query: 175 DRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                 L       Q             +RCL  +  +R + + L
Sbjct: 230 TNGTPEL-------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL 267

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 73.6 bits (180), Expect = 4e-15
 Identities = 30/164 (18%), Positives = 48/164 (29%), Gaps = 8/164 (4%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPR--LSCFGLMKN 118
           E   M     +     + + L +       ++ DL    I+F    +    L  FGL  +
Sbjct: 117 EHNKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 175

Query: 119 SRDGRSYST---NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
               +S         F  PE      V   + M+S G L   LLSG    P    +    
Sbjct: 176 LDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGL--SPFGGENDDET 233

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                  D  ++    S    +      + L  +P  R      
Sbjct: 234 LRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQA 277

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 71.3 bits (174), Expect = 1e-14
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 10/159 (6%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
            PM     + V     +AL +       ++ D+    I+       ++  FG+ +   D 
Sbjct: 106 GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMISATNAVKVMDFGIARAIADS 164

Query: 123 RSYSTNL-------AFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
            +  T          +  PE  R   V   S +YS G +L ++L+G+  PP      +  
Sbjct: 165 GNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE--PPFTGDSPVSV 222

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
                  D             +L  +  + L   P  R 
Sbjct: 223 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY 261

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 15/161 (9%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
                  +     A  I   L++  SK   +Y DL    I+ D D + +++ FG+ K + 
Sbjct: 96  SCHKFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILLDKDGHIKIADFGMCKENM 154

Query: 121 DGRSYSTNLAFT----PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
            G + +     T     PE L   +       +SFG LL ++L G+             +
Sbjct: 155 LGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH--------GQ 206

Query: 177 NIQTLTDSCLEGQFSSDEG--TELVRLASRCLQYEPRERPN 215
           + + L  S              E   L  +    EP +R  
Sbjct: 207 DEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLG 247

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           E   +      ++   + E +         ++ DL    I+ DDD+N +L+ FG      
Sbjct: 103 EKVTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILLDDDMNIKLTDFGFSCQLD 161

Query: 121 DGRSYST---NLAFTPPEYLRTGRV------TPESVMYSFGTLLLDLLSGKHIPPSHALD 171
            G          ++  PE +             E  M+S G ++  LL+G   PP     
Sbjct: 162 PGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS--PPFWHRK 219

Query: 172 LIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
            +    +    +         D    +  L SR L  +P++R      
Sbjct: 220 QMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 267

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 1e-13
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 17/173 (9%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
                         I  ALEY   K   ++ DL    I+ ++D++ +++ FG  K     
Sbjct: 103 GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 161

Query: 123 ------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
                  S+     +  PE L        S +++ G ++  L++G   PP       R  
Sbjct: 162 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL--PP------FRAG 213

Query: 177 NIQTLTDSCLEGQFSSDEGT--ELVRLASRCLQYEPRERPNPRSLVTALVTLQ 227
           N   +    ++ ++   E    +   L  + L  +  +R     +        
Sbjct: 214 NEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKA 266

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 64  PMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPR--LSCFGLMKNSRD 121
            +     +     + EAL++  S     + D+    I++    +    +  FG  +  + 
Sbjct: 98  ELNEREIVSYVHQVCEALQFLHSHNIG-HFDIRPENIIYQTRRSSTIKIIEFGQARQLKP 156

Query: 122 GRSYSTN---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNI 178
           G ++        +  PE  +   V+  + M+S GTL+  LLSG +               
Sbjct: 157 GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGIN--------PFLAETN 208

Query: 179 QTLTDSCLEGQFSSDEGT------ELVRLASRCLQYEPRERPNPRSL 219
           Q + ++ +  +++ DE        E +    R L  E + R      
Sbjct: 209 QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 12/174 (6%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
            ++       +   ++Q     +    A  +  ALEY  SK   +Y DL    I+ D + 
Sbjct: 83  MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILLDKNG 141

Query: 107 NPRLSCFGLMKNSRD-GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP 165
           + +++ FG  K   D   +      +  PE + T         +SFG L+ ++L+G    
Sbjct: 142 HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPF 201

Query: 166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGT--ELVRLASRCLQYEPRERPNPR 217
                    D N     +  L  +         ++  L SR +  +  +R    
Sbjct: 202 Y--------DSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNL 247

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
                A     A  I   LE+  ++   +Y DL    I+ D+  + R+S  GL  +    
Sbjct: 102 GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 160

Query: 123 RSYSTN--LAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQ 179
           + +++     +  PE L+ G      +  +S G +L  LL G      H      + +  
Sbjct: 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM 220

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP 214
           TLT +       S E   L+      LQ +   R 
Sbjct: 221 TLTMAVELPDSFSPELRSLLE---GLLQRDVNRRL 252

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 4e-13
 Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 18/184 (9%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
            E        +F  E + +           I   + Y  S + A + DL    I+  D  
Sbjct: 92  LELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIA-HFDLKPENIMLLDRN 150

Query: 107 NPR----LSCFGLMKNSRDGRSYSTNL---AFTPPEYLRTGRVTPESVMYSFGTLLLDLL 159
            P+    +  FGL      G  +        F  PE +    +  E+ M+S G +   LL
Sbjct: 151 VPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL 210

Query: 160 SGKHIPPSH----ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
           SG            L  +   N +       E ++ S+          R L  +P++R  
Sbjct: 211 SGASPFLGDTKQETLANVSAVNYE------FEDEYFSNTSALAKDFIRRLLVKDPKKRMT 264

Query: 216 PRSL 219
            +  
Sbjct: 265 IQDS 268

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 67.4 bits (164), Expect = 5e-13
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 14/167 (8%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPR--LSCFGLMKN 118
           E   M  A  +       E L++       ++ D+    I+ +        +  FGL   
Sbjct: 120 EDYKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCETKKASSVKIIDFGLATK 178

Query: 119 SRDGRS---YSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH-IPPSHALDLIR 174
                     +    F  PE +    V   + M++ G L   LLSG         L+ + 
Sbjct: 179 LNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETL- 237

Query: 175 DRNIQTLTDSCLEGQFS--SDEGTELVRLASRCLQYEPRERPNPRSL 219
            +N++       E  FS  S E  + ++     LQ EPR+R      
Sbjct: 238 -QNVKRCDWEFDEDAFSSVSPEAKDFIK---NLLQKEPRKRLTVHDA 280

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 5e-13
 Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 17/193 (8%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVF---D 103
            E    +  + F+  ++       L +A  +   +EY  SK   ++ D+     +     
Sbjct: 82  MELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLGK 140

Query: 104 DDVNPRLSCFGLMKNSRDGRSYSTN-----------LAFTPPEYLRTGRVTPESVMYSFG 152
                 +  FGL K  RD R++                +           +    + S G
Sbjct: 141 KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLG 200

Query: 153 TLLLDLLSGKHIPPSHALDLIRDRNIQTLTD--SCLEGQFSSDEGTELVRLASRCLQYEP 210
            +L+    G            R +  +      S           +E     + C     
Sbjct: 201 YVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF 260

Query: 211 RERPNPRSLVTAL 223
            ++P+   L    
Sbjct: 261 DDKPDYSYLRQLF 273

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 5e-13
 Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 28/224 (12%)

Query: 20  FIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAE 79
            +V L  + ++S       + +      +                +       +   +  
Sbjct: 71  NVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKV---PEPGVPTETIKDMMFQLLR 127

Query: 80  ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTN---LAFTPPEY 136
            L++  S  R ++ DL    I+       +L+ FGL +      + ++    L +  PE 
Sbjct: 128 GLDFLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEV 186

Query: 137 LRTGRVTPESVMYSFGTLLLDLLSGKHI---------------------PPSHALDLIRD 175
           L          ++S G +  ++   K +                           D+   
Sbjct: 187 LLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALP 246

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
           R       +    +F +D       L  +CL + P +R +  S 
Sbjct: 247 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 7/164 (4%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERA--LYHDLNAYRIVFDDDVNPRLSCFGLMKN 118
           E          R+   + +A++Y              N      D+D    +S FGL K 
Sbjct: 100 EKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM 159

Query: 119 SRDGRSYST---NLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRD 175
              G   ST      +  PE L     +     +S G +   LL G   PP +  +  + 
Sbjct: 160 EDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY--PPFYDENDAKL 217

Query: 176 RNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                  +   +  +  D            ++ +P +R      
Sbjct: 218 FEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA 261

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 7e-13
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFD-DDVNPRLSCFGLMKNS 119
           E   ++  +       + EA+ +C +    L+ D+    I+ D +    +L  FG     
Sbjct: 103 ERGALQEELARSFFWQVLEAVRHCHNCGV-LHRDIKDENILIDLNRGELKLIDFGSGALL 161

Query: 120 RDGRSYSTN--LAFTPPEYLRTGRVTPESV-MYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
           +D      +    ++PPE++R  R    S  ++S G LL D++ G   P  H  ++IR +
Sbjct: 162 KDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI-PFEHDEEIIRGQ 220

Query: 177 NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                        F     +E   L   CL   P +RP    +
Sbjct: 221 VF-----------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 252

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 39/228 (17%), Positives = 62/228 (27%), Gaps = 29/228 (12%)

Query: 20  FIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAE 79
            IV L      S      V     +          + ++S   Q +           +  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133

Query: 80  ALEYCTSKERALYHDLNAYRIVFDDD-VNPRLSCFGLMKNSRDGRSYSTNLAFT----PP 134
           +L Y  S     + D+    ++ D D    +L  FG  K    G    + +       P 
Sbjct: 134 SLAYIHSF-GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPE 192

Query: 135 EYLRTGRVTPESVMYSFGTLLLDLLSGKHI----PPSHALDLI----------------- 173
                   T    ++S G +L +LL G+ I         L  I                 
Sbjct: 193 LIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNP 252

Query: 174 --RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
              +     +        F      E + L SR L+Y P  R  P   
Sbjct: 253 NYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 2e-12
 Identities = 32/200 (16%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           ++F            +  +  +      L   + LEY        + DL    ++ D++ 
Sbjct: 79  FDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWIL-HRDLKPNNLLLDENG 137

Query: 107 NPRLSCFGLMKNSRDGRSYSTNLAFT-----PPEYLRTGRVTPESVMYSFGTLLLDLLSG 161
             +L+ FGL K+        T+   T     P              M++ G +L +LL  
Sbjct: 138 VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR 197

Query: 162 KHIPPSHALDLIRDRNIQTLTDSCLE----------------------GQFSSDEGTELV 199
               P  +      R  +TL     E                          S  G +L+
Sbjct: 198 VPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLL 257

Query: 200 RLASRCLQYEPRERPNPRSL 219
            L      + P  R      
Sbjct: 258 DLIQGLFLFNPCARITATQA 277

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 63.7 bits (154), Expect = 5e-12
 Identities = 18/201 (8%), Positives = 47/201 (23%), Gaps = 19/201 (9%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
            +    +  +      +          A  +   ++    K   +Y D+     +     
Sbjct: 80  IDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPN 138

Query: 107 NPRLSC-----FGLMKNSRDGRSYSTN-----------LAFTPPEYLRTGRVTPESVMYS 150
           +   +      FG++K  RD  +                 +           +    + +
Sbjct: 139 SKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEA 198

Query: 151 FGTLLLDLLSGKHIPP--SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQY 208
            G + +  L G         A +  +   I     S    +  +    E  +        
Sbjct: 199 LGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNL 258

Query: 209 EPRERPNPRSLVTALVTLQKD 229
                P+   L      + + 
Sbjct: 259 AFDATPDYDYLQGLFSKVLER 279

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 4e-11
 Identities = 23/186 (12%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
           + + +       +   + + L Y  +    ++ DL    +  ++D   ++  FGL + + 
Sbjct: 114 KHEKLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPGNLAVNEDCELKILDFGLARQAD 172

Query: 121 DGRSYSTNLAF--TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI-------------- 164
              +      +   P   L   R T    ++S G ++ ++++GK +              
Sbjct: 173 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIM 232

Query: 165 -----PPSHALDLIRDRNIQTLTDSCLE------GQFSSDEGTELVRLASRCLQYEPRER 213
                PP+  +  ++    +       E          ++     V L  + L  +  +R
Sbjct: 233 KVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQR 292

Query: 214 PNPRSL 219
                 
Sbjct: 293 VTAGEA 298

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 5e-11
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNP---RLSCFGLMKNS 119
           Q         +   I EA++Y  S     + D+    +++         +L+ FG  K +
Sbjct: 106 QAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET 164

Query: 120 RDGRSYSTN---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDR 176
               S +T      +  PE L   +      M+S G ++  LL G     S+    I   
Sbjct: 165 TSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG 224

Query: 177 NIQTLTDSCLE--GQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
               +     E      S+   E+  L    L+ EP +R      
Sbjct: 225 MKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEF 269

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 9e-11
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 11/176 (6%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
            E+             +             I  ALEY  S+   +Y D+    ++ D D 
Sbjct: 84  MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLDKDG 142

Query: 107 NPRLSCFGLMKNSRDGRSYSTNLAFTP----PEYLRTGRVTPESVMYSFGTLLLDLLSGK 162
           + +++ FGL K      +       TP    PE L           +  G ++ +++ G+
Sbjct: 143 HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

Query: 163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS 218
               +   + + +  +        E +F      E   L +  L+ +P++R     
Sbjct: 203 LPFYNQDHERLFELILME------EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGP 252

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 29/185 (15%)

Query: 63  QPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG 122
             +   +       + + L +C S  R L+ DL    ++ + +   +L+ FGL +     
Sbjct: 97  TGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 155

Query: 123 RSYSTNLAFT-----PPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI-PPSHALDLIRD- 175
               T+   T     P   L     +    ++S G +  ++++ + + P    +D +   
Sbjct: 156 VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRI 215

Query: 176 -RNIQTLTDSCLEGQFSSDE--------------------GTELVRLASRCLQYEPRERP 214
            R + T  +    G  S  +                      +   L S+ L Y+P +R 
Sbjct: 216 FRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRI 275

Query: 215 NPRSL 219
           + ++ 
Sbjct: 276 SAKAA 280

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 40/233 (17%)

Query: 20  FIVSLVLIASMSSFILLAVIFMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAE 79
            I+ +  I    +   +  +++        H +        +TQ +           I  
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYL------VTHLMGADLYKLLKTQHLSNDHICYFLYQILR 120

Query: 80  ALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYST-------NLAFT 132
            L+Y  S    L+ DL    ++ +   + ++  FGL + +     ++           + 
Sbjct: 121 GLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 179

Query: 133 PPEYLRTGRVTPESV-MYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLE---- 187
            PE +   +   +S+ ++S G +L ++LS + I P        +  +  L     E    
Sbjct: 180 APEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNC 239

Query: 188 ---------------------GQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
                                 +   +  ++ + L  + L + P +R      
Sbjct: 240 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 58.4 bits (140), Expect = 3e-10
 Identities = 25/201 (12%), Positives = 64/201 (31%), Gaps = 29/201 (14%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           +E                ++        L +   + YC  + R L+ DL    ++ + + 
Sbjct: 79  FEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLINREG 137

Query: 107 NPRLSCFGLMKNSRDGRSYSTNLAFTP-----PEYLRTGRVTPESVMYSFGTLLLDLLSG 161
             +++ FGL +         T+   T         + + + +    ++S G +  ++++G
Sbjct: 138 ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNG 197

Query: 162 KHIPPS-----------------------HALDLIRDRNIQTLTDSCLEGQFSSDEGTEL 198
             + P                        +  +L +     T+ +      F        
Sbjct: 198 TPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESG 257

Query: 199 VRLASRCLQYEPRERPNPRSL 219
           + L S+ L+ +P +R   +  
Sbjct: 258 IDLLSKMLKLDPNQRITAKQA 278

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 5e-10
 Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 30/202 (14%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           +EF        F      +   +       + + L +C S+   L+ DL    ++ + + 
Sbjct: 80  FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLINRNG 138

Query: 107 NPRLSCFGLMKNSRDGRSYSTNLAFT-----PPEYLRTGRVTPESVMYSFGTLLLDLLSG 161
             +L+ FGL +         +    T     P         +    M+S G +  +L + 
Sbjct: 139 ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANA 198

Query: 162 KHIP------------------------PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTE 197
                                             L   +       +             
Sbjct: 199 GRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT 258

Query: 198 LVRLASRCLQYEPRERPNPRSL 219
              L    L+  P +R +    
Sbjct: 259 GRDLLQNLLKCNPVQRISAEEA 280

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 61  ETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSR 120
                        A  I    EY  S    +Y DL    ++ D     +++ FG  K  +
Sbjct: 134 RIGRFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 192

Query: 121 D-GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQ 179
               +         PE + +         ++ G L+ ++ +G   PP  A   I+     
Sbjct: 193 GRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGY--PPFFADQPIQIYEKI 250

Query: 180 TLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN 215
                     FSS    +L  L    LQ +  +R  
Sbjct: 251 VSGKVRFPSHFSS----DLKDLLRNLLQVDLTKRFG 282

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 49/229 (21%)

Query: 40  FMFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYR 99
               +          +     E + +      +++  +   L+Y   +   ++ D+    
Sbjct: 97  VHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPEN 156

Query: 100 IVFDDD------VNPRLSCFGLMKNSRDGRSYS-TNLAFTPPEYLRTGRVTPESVMYSFG 152
           ++ +        +  +++  G      +  + S     +  PE L        + ++S  
Sbjct: 157 VLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTA 216

Query: 153 TLLLDLLSGKHI-------------------------PPSHALDLIRD-----------R 176
            L+ +L++G  +                          PS+ L   +            R
Sbjct: 217 CLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLR 276

Query: 177 NIQTLTDSCLEG------QFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
           NI  L    LE       +FS DE  E+    S  LQ +PR+R +   L
Sbjct: 277 NISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL 325

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 36/208 (17%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           ++F     +   S        +   RV   +   L Y     + L+ D+ A  ++   D 
Sbjct: 96  FDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLITRDG 154

Query: 107 NPRLSCFGLMKNSRDGRSYSTN--------LAFTPPEYLRTGR-VTPESVMYSFGTLLLD 157
             +L+ FGL +     ++   N        L + PPE L   R   P   ++  G ++ +
Sbjct: 155 VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAE 214

Query: 158 LLSGKHIPPS----HALDLIRD----------------------RNIQTLTDSCLEGQFS 191
           + +   I       H L LI                          ++       +   +
Sbjct: 215 MWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKA 274

Query: 192 SDEGTELVRLASRCLQYEPRERPNPRSL 219
                  + L  + L  +P +R +    
Sbjct: 275 YVRDPYALDLIDKLLVLDPAQRIDSDDA 302

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 34  ILLAVIFMFQIPSYEFHCLTFSNNFS-----GETQPMKWAMRLRVALHIAEALEYCTSKE 88
            L+ + + FQ  +     L + N         + +             I  ALE+     
Sbjct: 90  FLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL- 148

Query: 89  RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEY-----LRTGR-- 141
             +Y D+    I+ D + +  L+ FGL K      +          EY     +R G   
Sbjct: 149 GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSG 208

Query: 142 VTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRL 201
                  +S G L+ +LL+G    P         +   +      E  +  +       L
Sbjct: 209 HDKAVDWWSLGVLMYELLTGA--SPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDL 266

Query: 202 ASRCLQYEPRERP 214
             R L  +P++R 
Sbjct: 267 IQRLLMKDPKKRL 279

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 299 KKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQV 358
           K++G+  F  + +  +  CY + I    +     +  R+L YL    P++AL D  +A  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 359 ISPVWHMAAYLQAAALFALGKENEAQAALREA 390
           +      A +        +   +EA A L+ A
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 28/199 (14%)

Query: 48  EFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVN 107
             H +    N   + Q +       +   I   L+Y  S    ++ DL    +  ++D  
Sbjct: 101 VTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCE 159

Query: 108 PRLSCFGL--MKNSRDGRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH-- 163
            ++  FGL    +       +T     P   L          ++S G ++ +LL+G+   
Sbjct: 160 LKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF 219

Query: 164 -----------------IPPSHALDLIRDRNIQTLTDSCLE------GQFSSDEGTELVR 200
                             P +  L  I   + +    S  +                 V 
Sbjct: 220 PGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVD 279

Query: 201 LASRCLQYEPRERPNPRSL 219
           L  + L  +  +R      
Sbjct: 280 LLEKMLVLDSDKRITAAQA 298

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 42/226 (18%)

Query: 35  LLAVIFMFQIPSYEFHCLTFSNNFSGE----TQPMKWAMRLRVALHIAEALEYCTSKERA 90
           ++ +  + + P      L F +  + +     Q +           I +AL+YC S    
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM-GI 150

Query: 91  LYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDGRSYS----TNLAFTPPEYLRTGRVTPE 145
           ++ D+  + ++ D +    RL  +GL +    G+ Y+    +     P   +        
Sbjct: 151 MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYS 210

Query: 146 SVMYSFGTLLLDLLSGKH--------------------------------IPPSHALDLI 173
             M+S G +L  ++  K                                 I      + I
Sbjct: 211 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 270

Query: 174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
             R+ +   +  +  +       E +    + L+Y+ + R   R  
Sbjct: 271 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 316

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 27/212 (12%), Positives = 63/212 (29%), Gaps = 40/212 (18%)

Query: 47  YEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDV 106
           Y    L  +N        +       +   +   +++  S    ++ DL    IV   D 
Sbjct: 98  YLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI-IHRDLKPSNIVVKSDC 156

Query: 107 NPRLSCFGLMKNSRDGRSYSTN---LAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH 163
             ++  FGL + +      +       +  PE +          ++S G ++ +++  K 
Sbjct: 157 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKI 216

Query: 164 IPPSHALDLIRDRNIQTLTDSCLE------------------------------------ 187
           + P        ++ I+ L   C E                                    
Sbjct: 217 LFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPAD 276

Query: 188 GQFSSDEGTELVRLASRCLQYEPRERPNPRSL 219
            + +  + ++   L S+ L  +P +R +    
Sbjct: 277 SEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 1/131 (0%)

Query: 260 DLTAIHEILEKLGYKDDEGAATELSFQMWTGQMQETLNSKKKGDVAFRHKDFRASIECYT 319
            L A   +   L        A     +  +      +       V +       +I+ Y 
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 320 QFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGK 379
           + I++     P A+   + +        EA +  + A  + P    +    A      G 
Sbjct: 262 RAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

Query: 380 ENEAQAALREA 390
             EA    R+A
Sbjct: 321 IEEAVRLYRKA 331

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALND 352
           ++ L  K+ G+ A++ KDF  +++ Y +  ++    + T    ++  Y       +    
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCREL 60

Query: 353 ASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREA 390
             +A  +           A A   +G     +   ++A
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.74
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.59
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.45
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.25
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.22
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.04
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.03
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.67
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.52
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.5
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.39
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.2
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.11
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.1
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.0
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.48
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.69
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.41
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.25
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	90.47
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	89.09
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.53
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	85.93
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.48
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.19

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-46  Score=342.69  Aligned_cols=213  Identities=16%  Similarity=0.210  Sum_probs=168.5

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+.|.+|+.++++++|||||++++...    .+|||||+|+ +...+...+.++++..+..++.||+.||+|||++ |
T Consensus        46 ~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~-~  124 (276)
T d1uwha_          46 QQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK-S  124 (276)
T ss_dssp             THHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcC-C
Confidence            34578999999999999999999884333    3499999964 5555655667899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCcccccc---CccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ||||||||+|||++.++.+||+|||+++.....      .+..||+.|||||++.+   +.++.++|||||||++|||+|
T Consensus       125 ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~t  204 (276)
T d1uwha_         125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT  204 (276)
T ss_dssp             CCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999875432      23568999999999874   358899999999999999999


Q ss_pred             CCCCCCchhhHH-hhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDL-IRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |+.||.+..... ...........+. ....+..++.++.+||.+||+.||++|||+.+|++.|+.+.+.
T Consensus       205 g~~Pf~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         205 GQLPYSNINNRDQIIFMVGRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             SSCTTTTCCCHHHHHHHHHHTSCCCC-GGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCChHHHHHHHHhcCCCCCc-chhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence            999986532111 1101111111111 1234566788999999999999999999999999999988764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-46  Score=342.62  Aligned_cols=209  Identities=16%  Similarity=0.192  Sum_probs=164.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      .+.++|.+|+.++++++|||||++++.+.     .+|||||+|+.+ ..+....+.++|.++..++.||+.||.|||++ 
T Consensus        69 ~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-  147 (299)
T d1jpaa_          69 KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADM-  147 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhC-
Confidence            34578999999999999999999995443     349999997644 44555567899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC---------ccccccccCCccccccCccCCCCcchhhHHHHHHHH
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR---------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLL  159 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  159 (401)
                      ||+||||||+||||+.++.+||+|||+++......         ...||+.|+|||.+.++.++.++|||||||++|||+
T Consensus       148 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~  227 (299)
T d1jpaa_         148 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM  227 (299)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHH
Confidence            99999999999999999999999999998754321         124688999999999999999999999999999999


Q ss_pred             h-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          160 S-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       160 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      | |..||.+.......     ..+....+.+.|..++..+.+||.+||+.||++|||+.+|++.|+.+.+.
T Consensus       228 t~g~~Pf~~~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         228 SYGERPYWDMTNQDVI-----NAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             TTSCCTTTTCCHHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             hCCCCCCCCCCHHHHH-----HHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence            8 78887654322111     11222233456777889999999999999999999999999999887653

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=332.60  Aligned_cols=200  Identities=18%  Similarity=0.241  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++.+++|||||+++..+.     .+|||||+|+.+..+.....++++..+..++.||+.||+|||++ ||
T Consensus        49 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~-~i  127 (263)
T d2j4za1          49 VEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV  127 (263)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            4577899999999999999999995554     34999999765554444556799999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCch
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSH  168 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  168 (401)
                      +||||||+|||++.++.+||+|||+++.....  ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus       128 vHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         128 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             CCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             eeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999999876544  3457899999999999988999999999999999999999998764


Q ss_pred             hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          169 ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ........    +..  ....+|..++.++.+||.+||+.||.+|||+.+++++
T Consensus       208 ~~~~~~~~----i~~--~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         208 TYQETYKR----ISR--VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             SHHHHHHH----HHT--TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             CHHHHHHH----HHc--CCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence            33222111    111  1224567788999999999999999999999999873

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=334.09  Aligned_cols=207  Identities=17%  Similarity=0.258  Sum_probs=162.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..++|.+|+.++++++||||+++++...     .+||||++++ +...+......+++..++.++.||+.||.|||++ +
T Consensus        43 ~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~-~  121 (263)
T d1sm2a_          43 SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA-C  121 (263)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhcc-c
Confidence            4578999999999999999999995443     3499999965 5555566677899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+..++.++|||||||++|||+|++.|
T Consensus       122 iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~  201 (263)
T d1sm2a_         122 VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI  201 (263)
T ss_dssp             CCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             eeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCC
Confidence            999999999999999999999999999875433     224578999999999999999999999999999999996555


Q ss_pred             CCch-hhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          165 PPSH-ALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |... .....     ...+....+...|..++.++.+||.+||+.||++|||+++|++.|+.+.+
T Consensus       202 ~~~~~~~~~~-----~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         202 PYENRSNSEV-----VEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             TTCSCCHHHH-----HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-----HHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            4332 21111     11112223344567778899999999999999999999999999998754

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-46  Score=336.87  Aligned_cols=205  Identities=15%  Similarity=0.216  Sum_probs=170.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ..++|.+|+.++++++|||||++++.++    .+|||||+|+.+..+.....++++..++.++.||+.||+|||++ |||
T Consensus        51 ~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~-~ii  129 (277)
T d1xbba_          51 LKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES-NFV  129 (277)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhC-Ccc
Confidence            3578999999999999999999985444    34999999876655555667899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      ||||||+|||++.++.+||+|||+++......       ...||+.|+|||.+.+..++.++|||||||++|||+| |+.
T Consensus       130 HrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~  209 (277)
T d1xbba_         130 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQK  209 (277)
T ss_dssp             CSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCC
Confidence            99999999999999999999999998754331       2357899999999999999999999999999999998 788


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ||.+.....     +...+....+.+.|..++.++.+||.+||+.||.+|||+++|...|+..
T Consensus       210 Pf~~~~~~~-----~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         210 PYRGMKGSE-----VTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             SSTTCCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             CCCCCCHHH-----HHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            876543221     1112222334456778899999999999999999999999998877653

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-45  Score=336.37  Aligned_cols=207  Identities=15%  Similarity=0.193  Sum_probs=171.9

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...++|.+|+.++++++|||||++++...    .+|||||+|+.+ ..+...+..+++..+..++.||+.||.|||++ |
T Consensus        51 ~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~-~  129 (285)
T d1u59a_          51 ADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK-N  129 (285)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            34578999999999999999999985444    349999997644 44455667899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      |+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++.++.++.++|||||||++|||+| |
T Consensus       130 iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G  209 (285)
T d1u59a_         130 FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG  209 (285)
T ss_dssp             EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             eecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCC
Confidence            999999999999999999999999999875433       23457889999999999999999999999999999998 8


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      +.||.+......     ...+....+.+.|+.++.++.+||.+||+.||++|||+.+|.+.|+...
T Consensus       210 ~~Pf~~~~~~~~-----~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         210 QKPYKKMKGPEV-----MAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             CCTTTTCCTHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHH-----HHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            888765322211     1122223345667888999999999999999999999999999887543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-45  Score=333.95  Aligned_cols=210  Identities=18%  Similarity=0.247  Sum_probs=172.5

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-cccccc-CCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFS-GETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~-~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...++|.+|+.++++++|||||++++.+.     .+|||||+++ +...+. .....+++..++.++.||+.||+|||++
T Consensus        55 ~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~  134 (287)
T d1opja_          55 MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  134 (287)
T ss_dssp             SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC
Confidence            34578999999999999999999995444     2499999965 444443 3467899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCCC-----ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-----SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGK  162 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  162 (401)
                       ||+||||||+||||+.++.+||+|||+++......     ...|++.|+|||++.++.++.++|||||||++|||++|+
T Consensus       135 -~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~  213 (287)
T d1opja_         135 -NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG  213 (287)
T ss_dssp             -TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTS
T ss_pred             -CcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCC
Confidence             99999999999999999999999999998765432     224678999999999999999999999999999999987


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      .||......    ......+......+.|..++.++.+||.+||+.||.+|||+.+|++.|+.+...
T Consensus       214 ~p~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         214 MSPYPGIDL----SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             CCSSTTCCH----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             CCCCCcchH----HHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            776443211    112222333345566778899999999999999999999999999999887543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=333.97  Aligned_cols=210  Identities=17%  Similarity=0.214  Sum_probs=167.6

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccc-cccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSN-NFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~-~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ....+|.+|+.++++++|||||++++.+.     ..|||||.++++. .+......+++..++.++.||+.||+|||++ 
T Consensus        51 ~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~-  129 (283)
T d1mqba_          51 KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM-  129 (283)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcccc-
Confidence            34568999999999999999999985443     3399999976444 4444567899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      +|+||||||+||||+.++.+||+|||+++.....       ....||+.|+|||++.++.++.++|||||||++|||+||
T Consensus       130 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~  209 (283)
T d1mqba_         130 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY  209 (283)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhC
Confidence            9999999999999999999999999999875432       123578899999999999999999999999999999997


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      +.||......    ......+....+.+.|..++..+.+||.+||+.||++|||+.+|++.|+.+.+.
T Consensus       210 ~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         210 GERPYWELSN----HEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             SCCTTTTCCH----HHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCccccCCH----HHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            7665543211    111222333345566778889999999999999999999999999999887654

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-45  Score=338.99  Aligned_cols=202  Identities=15%  Similarity=0.150  Sum_probs=168.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+++..+.....++++..+..++.||+.||.|||++ ||
T Consensus        58 ~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~-~i  136 (309)
T d1u5ra_          58 KWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH-NM  136 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CE
Confidence            3467999999999999999999995444     34999999887766655667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCCcccccc---CccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRT---GRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |||||||+|||++.++.+||+|||+++.........||+.|+|||++.+   +.++.++|||||||++|||++|..||.+
T Consensus       137 iHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~  216 (309)
T d1u5ra_         137 IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  216 (309)
T ss_dssp             BCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             eccCCCcceEEECCCCCEEEeecccccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999999998887778899999999999864   4689999999999999999999999865


Q ss_pred             hhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          168 HALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ......    ...+.........+..+++++.+||.+||+.||.+|||+.+++++
T Consensus       217 ~~~~~~----~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         217 MNAMSA----LYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             SCHHHH----HHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCHHHH----HHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence            432211    111111111222344577899999999999999999999999874

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-45  Score=330.02  Aligned_cols=202  Identities=12%  Similarity=0.065  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+......+++..+..++.||+.||+|||++ ||+
T Consensus        47 ~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~-~Ii  125 (271)
T d1nvra_          47 PENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI-GIT  125 (271)
T ss_dssp             --CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            467999999999999999999995544     34999999765555555667899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||+|||++.++.+||+|||+++.....      ...+||+.|+|||++.+..+ +.++|||||||++|||+||+.|
T Consensus       126 HrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~p  205 (271)
T d1nvra_         126 HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP  205 (271)
T ss_dssp             CSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCC
Confidence            9999999999999999999999999875322      34579999999999988765 6789999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.........   ................++.++.+||.+||+.||.+|||+.+++++
T Consensus       206 f~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         206 WDQPSDSCQE---YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             CSSSSTTSHH---HHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCCCChHHHH---HHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            8653211100   011111111112234567889999999999999999999999763

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-45  Score=330.32  Aligned_cols=203  Identities=13%  Similarity=0.177  Sum_probs=162.0

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ...+.|.+|+.++++++|||||+++..+.         .+|||||+|+.+..+..+...+++..+..++.||+.||+|||
T Consensus        50 ~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH  129 (270)
T d1t4ha_          50 SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH  129 (270)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999985432         359999997655555545678999999999999999999999


Q ss_pred             cCCC--ceeccCCCCCEEEC-CCCCeEEecccCccccCCC--CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           86 SKER--ALYHDLNAYRIVFD-DDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        86 ~~~~--ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      ++ +  |+||||||+|||++ .++.+||+|||+++.....  ....||+.|+|||++.+ +++.++|||||||++|||+|
T Consensus       130 ~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~  207 (270)
T d1t4ha_         130 TR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMAT  207 (270)
T ss_dssp             TS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHH
T ss_pred             HC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHH
Confidence            99 7  99999999999997 4789999999999875543  34579999999999874 69999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+......   ....+........++...++++.+||.+||+.||++|||+.|++++
T Consensus       208 g~~Pf~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         208 SEYPYSECQNAAQ---IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             SSCTTTTCSSHHH---HHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCCCCCcccHHH---HHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCC
Confidence            9999865321110   0111111111122344567789999999999999999999999863

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-45  Score=331.01  Aligned_cols=207  Identities=19%  Similarity=0.261  Sum_probs=167.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCccccc-ccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFSNN-FSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~~~-~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++|||||++++...    .+||||++++.+.. +.. ...++++..+++++.||+.||.|||++ |
T Consensus        51 ~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~-~  129 (272)
T d1qpca_          51 SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-N  129 (272)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            4578999999999999999999984433    34999999765443 332 234699999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+||||+.++.+||+|||+++.....     ....||+.|+|||++.++.++.++|||||||++|||+||+.|
T Consensus       130 ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~  209 (272)
T d1qpca_         130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRI  209 (272)
T ss_dssp             EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCC
Confidence            999999999999999999999999999876543     234578899999999999999999999999999999997766


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |.......    .....+....+...|..++.++.+||.+||+.||++|||+.+|++.|+..-
T Consensus       210 ~~~~~~~~----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         210 PYPGMTNP----EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             SSTTCCHH----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHH----HHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence            54322111    011111222344556778889999999999999999999999999887653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=330.71  Aligned_cols=202  Identities=13%  Similarity=0.160  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+.. ..++++..+..++.||+.||.|||++ ||
T Consensus        60 ~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~-~i  137 (293)
T d1yhwa1          60 KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVCRECLQALEFLHSN-QV  137 (293)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3567999999999999999999995544     34999999765554443 35699999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.++.+||+|||+++.....    ...+||+.|+|||++.+..++.++|||||||++|+|+||..||.
T Consensus       138 iHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  217 (293)
T d1yhwa1         138 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (293)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCC
Confidence            99999999999999999999999999875432    34568999999999999999999999999999999999999986


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +............   ........+..++.++.+||.+||+.||.+|||+.+++++
T Consensus       218 ~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         218 NENPLRALYLIAT---NGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             TSCHHHHHHHHHH---HCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTC
T ss_pred             CCCHHHHHHHHHh---CCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            5432211111110   1111223456788999999999999999999999999763

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=336.95  Aligned_cols=205  Identities=19%  Similarity=0.310  Sum_probs=166.1

Q ss_pred             hhhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC----------------------CCCC
Q 015733           15 LQSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE----------------------TQPM   65 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~----------------------~~~l   65 (401)
                      .....|.+|+.++.++ +|||||+++..+.     .+|||||+|+ +...+...                      ...+
T Consensus        82 ~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  161 (325)
T d1rjba_          82 SEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVL  161 (325)
T ss_dssp             --CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------C
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCC
Confidence            3456899999999998 8999999995444     3499999965 44444332                      2358


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCcccccc
Q 015733           66 KWAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRT  139 (401)
Q Consensus        66 ~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~  139 (401)
                      ++..++.++.||+.||+|||++ |||||||||+|||++.++.+||+|||+|+......      ...||+.|||||++.+
T Consensus       162 ~~~~~~~i~~qi~~gl~yLH~~-~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  240 (325)
T d1rjba_         162 TFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE  240 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhC-CeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcC
Confidence            9999999999999999999999 99999999999999999999999999998754332      2346899999999999


Q ss_pred             CccCCCCcchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          140 GRVTPESVMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       140 ~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      +.++.++|||||||++|||+| |..||.+....    ..+..++....+.+.|..++.++.+||.+||+.||++|||+++
T Consensus       241 ~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~----~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~e  316 (325)
T d1rjba_         241 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD----ANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPN  316 (325)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCcceeccchhHHHHHHHhCCCCCCCCCCHH----HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            999999999999999999998 78887653211    1122233334455667788999999999999999999999999


Q ss_pred             HHHHHH
Q 015733          219 LVTALV  224 (401)
Q Consensus       219 vl~~l~  224 (401)
                      |+++|.
T Consensus       317 i~~~L~  322 (325)
T d1rjba_         317 LTSFLG  322 (325)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999885

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=331.02  Aligned_cols=200  Identities=17%  Similarity=0.205  Sum_probs=165.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++||||++++..++     .+|||||+|+.+..+....+.+++..+..++.|++.||.|||++ ||
T Consensus        51 ~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~-~i  129 (288)
T d1uu3a_          51 KVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK-GI  129 (288)
T ss_dssp             CHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccc-cE
Confidence            3467999999999999999999985554     34999999765554444567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |||||||+|||+++++.+||+|||+++.....      .+..||+.|+|||++.+..++.++|||||||++|||+||..|
T Consensus       130 iHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~P  209 (288)
T d1uu3a_         130 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP  209 (288)
T ss_dssp             ECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             EcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCC
Confidence            99999999999999999999999999875422      245799999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+...........    ..  ...+|..+++++.+||.+||+.||.+|||++|++..
T Consensus       210 f~~~~~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         210 FRAGNEYLIFQKII----KL--EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             SCCSSHHHHHHHHH----TT--CCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             CCCcCHHHHHHHHH----cC--CCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCC
Confidence            87653322211111    11  224567788999999999999999999999997543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-44  Score=328.81  Aligned_cols=202  Identities=15%  Similarity=0.172  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccc-cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNF-SGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~-~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+ ....+++++..+..++.||+.||.|||++ |
T Consensus        52 ~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~-~  130 (288)
T d2jfla1          52 ELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN-K  130 (288)
T ss_dssp             GGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            4578999999999999999999985444     249999997655444 44467899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC----CCccccccccCCccccc-----cCccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD----GRSYSTNLAFTPPEYLR-----TGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      |+||||||+|||++.++.+||+|||+++....    ..+..||+.|+|||++.     +..++.++|||||||++|||+|
T Consensus       131 ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemlt  210 (288)
T d2jfla1         131 IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAE  210 (288)
T ss_dssp             EECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHH
T ss_pred             EEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhh
Confidence            99999999999999999999999999876433    23567999999999984     3568999999999999999999


Q ss_pred             CCCCCCchhhHHhhhcccccccc-ccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTD-SCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+......    ...+.. .......+..++.++.+||.+||+.||.+|||+.|++++
T Consensus       211 g~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         211 IEPPHHELNPMRV----LLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             SSCTTTTSCGGGH----HHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCCCCCCCCHHHH----HHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            9999865422111    111111 111123456778899999999999999999999998763

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=326.89  Aligned_cols=202  Identities=16%  Similarity=0.222  Sum_probs=156.9

Q ss_pred             hhhhHHHHHHHHHHhhhCCCeEEEeeeecc-------ccEeeecCCcc-cccccC---CCCCCCHHHHHHHHHHHHHHHH
Q 015733           14 RLQSTYFIVSLVLIASMSSFILLAVIFMFQ-------IPSYEFHCLTF-SNNFSG---ETQPMKWAMRLRVALHIAEALE   82 (401)
Q Consensus        14 ~~~~~~f~~E~~~l~~~~h~niv~~~~~~~-------~~v~Ey~~~~l-~~~~~~---~~~~l~~~~~~~i~~qi~~~l~   82 (401)
                      +...+.|.+|+.++++++|||||+++..+.       .+|||||+|+. ...+..   ....+++..++.++.||+.||.
T Consensus        44 ~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~  123 (269)
T d2java1          44 EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK  123 (269)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999984331       34999999754 444332   3567999999999999999999


Q ss_pred             HHhcCCC-----ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHH
Q 015733           83 YCTSKER-----ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGT  153 (401)
Q Consensus        83 ~lH~~~~-----ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  153 (401)
                      |||++ |     ||||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||
T Consensus       124 ylH~~-~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGv  202 (269)
T d2java1         124 ECHRR-SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGC  202 (269)
T ss_dssp             HHHHH-CC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHh-cCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCH
Confidence            99987 5     999999999999999999999999999875443    3457899999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          154 LLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       154 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      ++|||+||+.||.+.........    +... ....+|..+++++.+||.+||+.||.+|||+.++++
T Consensus       203 ilyel~tg~~Pf~~~~~~~~~~~----i~~~-~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         203 LLYELCALMPPFTAFSQKELAGK----IREG-KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHH----HHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHhhCCCCCCCCCHHHHHHH----HHcC-CCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            99999999999876433222111    1111 122456678889999999999999999999999976

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-44  Score=320.06  Aligned_cols=205  Identities=20%  Similarity=0.253  Sum_probs=170.5

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ...++|.+|+.++.+++||||+++++.+.     ..||||++++ +...+......+++..+.+++.|+++||.|||++ 
T Consensus        41 ~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~-  119 (258)
T d1k2pa_          41 MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK-  119 (258)
T ss_dssp             SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhc-
Confidence            45689999999999999999999995443     2399999965 4555556677899999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CC
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GK  162 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~  162 (401)
                      ||+||||||+|||++.++.+||+|||+++.....     ....+|+.|+|||.+.+..++.++|||||||++|||+| |+
T Consensus       120 ~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~  199 (258)
T d1k2pa_         120 QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK  199 (258)
T ss_dssp             TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCC
Confidence            9999999999999999999999999999865433     23457899999999999999999999999999999998 78


Q ss_pred             CCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          163 HIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      .||.........     ..+....+...|..++.++.+||.+||+.||++|||+++|+..|..
T Consensus       200 ~Pf~~~~~~~~~-----~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         200 MPYERFTNSETA-----EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             CTTTTSCHHHHH-----HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             CCCCCCCHHHHH-----HHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence            787654332221     1112233445677788899999999999999999999999998864

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-44  Score=324.23  Aligned_cols=207  Identities=18%  Similarity=0.241  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..+.    .+||||++++.+ ..+.....++++..++.++.||+.||.|||++ ||
T Consensus        51 ~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~-~i  129 (273)
T d1mp8a_          51 VREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK-RF  129 (273)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhccc-Ce
Confidence            4578999999999999999999995444    349999997644 44445567899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHI  164 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p  164 (401)
                      +||||||+||+++.++.+||+|||+++.....     ....||+.|+|||++.+..++.++|||||||++|||+| |.+|
T Consensus       130 iHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P  209 (273)
T d1mp8a_         130 VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP  209 (273)
T ss_dssp             CCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             eccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCC
Confidence            99999999999999999999999999875432     23457899999999999999999999999999999998 6777


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |........     ...+......++|+.++.++.+||.+||+.||.+|||+.+|++.|+.+.+
T Consensus       210 ~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         210 FQGVKNNDV-----IGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             TTTCCGGGH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            654322111     11111222345677889999999999999999999999999999987643

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-43  Score=325.97  Aligned_cols=203  Identities=12%  Similarity=0.124  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      ...|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+....+.+++..+..++.||+.||+|||++ ||+
T Consensus        51 ~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~-~ii  129 (307)
T d1a06a_          51 EGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDL-GIV  129 (307)
T ss_dssp             ----CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhc-eee
Confidence            456889999999999999999995554     34999999654444444567899999999999999999999999 999


Q ss_pred             eccCCCCCEEEC---CCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           92 YHDLNAYRIVFD---DDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        92 H~dlk~~Nill~---~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      ||||||+|||++   .++.+||+|||+++.....   .+.+||+.|+|||++.+..++.++|||||||++|||+||..||
T Consensus       130 HrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf  209 (307)
T d1a06a_         130 HRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPF  209 (307)
T ss_dssp             CSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             eEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCC
Confidence            999999999995   5789999999999876543   3457999999999999999999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .+.............  ........+..+++++.+||.+||+.||++|||+.|++++
T Consensus       210 ~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         210 YDENDAKLFEQILKA--EYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             CCSSHHHHHHHHHTT--CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             CCCCHHHHHHHHhcc--CCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            765332222111111  0111223445678899999999999999999999999874

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=322.20  Aligned_cols=209  Identities=19%  Similarity=0.265  Sum_probs=165.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCCcc-cccccC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCLTF-SNNFSG-ETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~~l-~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++.+++|||||+++..+.    .+||||++++. ...+.. ....++|.+++.++.||+.||.|||++ |
T Consensus        55 ~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~-~  133 (285)
T d1fmka3          55 SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-N  133 (285)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh-h
Confidence            3478999999999999999999984443    24999999764 444433 245799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+||||+.++.+||+|||+++.....     ....||+.|+|||++.++.++.++|||||||++|||+||+.|
T Consensus       134 ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p  213 (285)
T d1fmka3         134 YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV  213 (285)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCC
Confidence            999999999999999999999999999875432     224578999999999999999999999999999999998776


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |........    ....+......+.+..++.++.+||.+||+.||++|||+.+|+..|+.....
T Consensus       214 ~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~  274 (285)
T d1fmka3         214 PYPGMVNRE----VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  274 (285)
T ss_dssp             SSTTCCHHH----HHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             CCCCCCHHH----HHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcC
Confidence            654321110    1111112234456778889999999999999999999999999999876644

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-43  Score=328.94  Aligned_cols=208  Identities=13%  Similarity=0.182  Sum_probs=170.6

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecC-CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHC-LTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~-~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..++|.+|+.++++++|||||++++.+.    ..++||+. |++...+......+++..+++++.||+.||.|||++ ||
T Consensus        54 ~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~-~i  132 (317)
T d1xkka_          54 ANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR-RL  132 (317)
T ss_dssp             THHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence            3578999999999999999999984433    23788887 556666666778899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~  163 (401)
                      |||||||+|||++.++.+||+|||+++......      ...||+.|+|||++.++.++.++|||||||++|||+| |..
T Consensus       133 iHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~  212 (317)
T d1xkka_         133 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK  212 (317)
T ss_dssp             CCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCC
Confidence            999999999999999999999999998754332      2347899999999999999999999999999999999 566


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      ||.+....     .+...+....+.+.|..++.++.+||.+||+.||.+|||+.+|+..|..+...
T Consensus       213 p~~~~~~~-----~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         213 PYDGIPAS-----EISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             TTTTSCGG-----GHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCCCCHH-----HHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            65443211     12222333334456778889999999999999999999999999999887543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-44  Score=330.55  Aligned_cols=208  Identities=16%  Similarity=0.195  Sum_probs=161.8

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .....|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+..+.+.+++..+..++.||+.||.|||++.|
T Consensus        46 ~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~  125 (322)
T d1s9ja_          46 AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK  125 (322)
T ss_dssp             THHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33578999999999999999999995554     3499999986555555455679999999999999999999997328


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCC--CCccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRD--GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPS  167 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~  167 (401)
                      |+||||||+|||++.++.+||+|||+|+....  ..+.+||+.|+|||++.+.+++.++||||+||++|||+||+.||.+
T Consensus       126 IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~  205 (322)
T d1s9ja_         126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP  205 (322)
T ss_dssp             CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSC
T ss_pred             EEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999999986432  3456899999999999999999999999999999999999999865


Q ss_pred             hhhHHhhhccc----------------------------------ccccccc---ccCCCC-hHHHHHHHHHHHHhcccC
Q 015733          168 HALDLIRDRNI----------------------------------QTLTDSC---LEGQFS-SDEGTELVRLASRCLQYE  209 (401)
Q Consensus       168 ~~~~~~~~~~~----------------------------------~~~~~~~---~~~~~~-~~~~~~l~~li~~cl~~~  209 (401)
                      ...........                                  .......   .....+ ...+.++.+||.+||+.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d  285 (322)
T d1s9ja_         206 PDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN  285 (322)
T ss_dssp             CCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCC
Confidence            32111000000                                  0000000   001111 124678999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |.+|||+++++++
T Consensus       286 P~~R~ta~e~L~H  298 (322)
T d1s9ja_         286 PAERADLKQLMVH  298 (322)
T ss_dssp             TTTSCCHHHHHTS
T ss_pred             hhHCcCHHHHhhC
Confidence            9999999999874

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=322.35  Aligned_cols=207  Identities=19%  Similarity=0.237  Sum_probs=169.3

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...++|.+|+.++++++||||+.+++.+.    .+||||+++ ++...+.....++++..++.++.||+.||.|||++ |
T Consensus        53 ~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~-~  131 (273)
T d1u46a_          53 EAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK-R  131 (273)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhC-C
Confidence            34578999999999999999999995444    339999995 45555555567799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC-------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh-C
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR-------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-G  161 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g  161 (401)
                      |+||||||+|||++.++.+||+|||+++......       ...|++.|+|||.+.+..++.++|||||||++|||+| |
T Consensus       132 iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G  211 (273)
T d1u46a_         132 FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYG  211 (273)
T ss_dssp             EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTS
T ss_pred             EeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCC
Confidence            9999999999999999999999999999764432       2346789999999999999999999999999999998 7


Q ss_pred             CCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcc
Q 015733          162 KHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTL  226 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~  226 (401)
                      ..||.+......    ...+.....+.+.+..++..+.+||.+||+.||++|||+.+|++.|...
T Consensus       212 ~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         212 QEPWIGLNGSQI----LHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCTTTTCCHHHH----HHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHH----HHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            888765432221    2222233334456677888999999999999999999999999988753

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-43  Score=324.98  Aligned_cols=200  Identities=16%  Similarity=0.226  Sum_probs=168.9

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.+++|+.++++++||||+.++..++     .+|||||+|+.+..+....+.+++..++.++.||+.||+|||++ ||
T Consensus        48 ~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~-~i  126 (337)
T d1o6la_          48 EVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR-DV  126 (337)
T ss_dssp             CHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhc-Cc
Confidence            4577999999999999999999996555     34999999876665665667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||++.+|.+||+|||+++.....    ...+||+.|+|||++.+..++.++||||+||++|||+||+.||.
T Consensus       127 iHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~  206 (337)
T d1o6la_         127 VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  206 (337)
T ss_dssp             BCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCC
Confidence            99999999999999999999999999875432    34679999999999999999999999999999999999999987


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      +.............      ...+|..+++++.+||.+||++||.+||+     +.+++++
T Consensus       207 ~~~~~~~~~~i~~~------~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         207 NQDHERLFELILME------EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             CSSHHHHHHHHHHC------CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             CcCHHHHHHHHhcC------CCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence            75433322221111      23467778899999999999999999995     7888763

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-42  Score=322.02  Aligned_cols=200  Identities=18%  Similarity=0.192  Sum_probs=169.5

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++||||++++..+.     .+|||||+|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        47 ~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i  125 (316)
T d1fota_          47 QVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK-DI  125 (316)
T ss_dssp             CHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT-TE
T ss_pred             HHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccC-cE
Confidence            3578999999999999999999995555     34999999887666666777899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      +||||||+|||++.+|.+||+|||+++..... .+.+||+.|+|||++.+..++.++|||||||++|||+||+.||.+..
T Consensus       126 iHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~  205 (316)
T d1fota_         126 IYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN  205 (316)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             EccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999986554 45689999999999999899999999999999999999999987653


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVTA  222 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~~  222 (401)
                      .........    ..  ...+|..++.++.+++.+||.+||.+|+     |+++++++
T Consensus       206 ~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         206 TMKTYEKIL----NA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             HHHHHHHHH----HC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHHHHHHHH----cC--CCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence            322211111    11  1245677888999999999999999996     89998864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-42  Score=320.34  Aligned_cols=209  Identities=18%  Similarity=0.250  Sum_probs=170.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeee-cc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFM-FQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKE   88 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~-~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~   88 (401)
                      ..++|.+|+.++++++|||||++++. .+     ..|||||+++ +..++......+++..+++++.|++.||.|||+. 
T Consensus        71 ~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~-  149 (311)
T d1r0pa_          71 EVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK-  149 (311)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhccc-
Confidence            34789999999999999999999843 32     2499999965 4445555677789999999999999999999999 


Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccccCCCC--------ccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR--------SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                      +|+||||||+|||+++++.+||+|||+++......        ...||+.|+|||.+.++.++.++||||||+++|||+|
T Consensus       150 ~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t  229 (311)
T d1r0pa_         150 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT  229 (311)
T ss_dssp             TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHH
Confidence            99999999999999999999999999998754321        2347889999999999999999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |+.||......    ......+....+...|..++.++.+||.+||+.||++|||+.+|++.|+.+...
T Consensus       230 ~~~p~~~~~~~----~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         230 RGAPPYPDVNT----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             TSCCSCC----------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCH----HHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            88887654211    111111112223445677888999999999999999999999999999988754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.5e-43  Score=321.06  Aligned_cols=206  Identities=18%  Similarity=0.257  Sum_probs=165.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccC-----------------------CCCCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG-----------------------ETQPMK   66 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~-----------------------~~~~l~   66 (401)
                      ..++|.+|+.++++++|||++.++....     ..||||++++ +...+..                       ....++
T Consensus        59 ~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  138 (301)
T d1lufa_          59 MQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS  138 (301)
T ss_dssp             HHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCC
Confidence            4678999999999999999999985443     3499999854 4443321                       134589


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccC
Q 015733           67 WAMRLRVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTG  140 (401)
Q Consensus        67 ~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~  140 (401)
                      +..++.++.|++.||+|||++ ++|||||||+|||++.++.+||+|||+++.....      .+..+++.|+|||.+.+.
T Consensus       139 ~~~~~~i~~qi~~gl~ylH~~-~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  217 (301)
T d1lufa_         139 CAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYN  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhhcccC-CeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccC
Confidence            999999999999999999999 9999999999999999999999999999864322      234678899999999999


Q ss_pred             ccCCCCcchhhHHHHHHHHhCCCC-CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 015733          141 RVTPESVMYSFGTLLLDLLSGKHI-PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSL  219 (401)
Q Consensus       141 ~~~~~~Dv~slG~~l~el~tg~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~v  219 (401)
                      .++.++|||||||++|||++|..| |.+......    ...+ ........|..++.++.+||.+||+.||++|||+.+|
T Consensus       218 ~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~----~~~v-~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev  292 (301)
T d1lufa_         218 RYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV----IYYV-RDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSI  292 (301)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH----HHHH-HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCChhhhhccchhhHHHHHccCCCCCCCCCHHHH----HHHH-HcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence            999999999999999999999754 443321111    1111 1222345677888999999999999999999999999


Q ss_pred             HHHHHccc
Q 015733          220 VTALVTLQ  227 (401)
Q Consensus       220 l~~l~~~~  227 (401)
                      ++.|+++.
T Consensus       293 ~~~L~~i~  300 (301)
T d1lufa_         293 HRILQRMC  300 (301)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4e-42  Score=322.38  Aligned_cols=204  Identities=16%  Similarity=0.118  Sum_probs=165.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+ +...+....+++++..+..++.||+.||.|||++ |
T Consensus        66 ~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~-~  144 (350)
T d1koaa2          66 DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN-N  144 (350)
T ss_dssp             HHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhc-C
Confidence            3577899999999999999999995544     3499999965 5555655667899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECC--CCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDD--DVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||||+|||++.  ++.+||+|||+++......   ...||+.|+|||++.+..++.++|||||||++|||+||..|
T Consensus       145 iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~P  224 (350)
T d1koaa2         145 YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP  224 (350)
T ss_dssp             EECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCC
Confidence            999999999999964  6789999999998765543   45789999999999998999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.+..............  ..........++.++.+||.+||+.||++|||+.+++++
T Consensus       225 f~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         225 FGGENDDETLRNVKSCD--WNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             SCCSSHHHHHHHHHHTC--CCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhCC--CCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            87643222111111110  011112234567889999999999999999999999874

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=4.4e-42  Score=322.32  Aligned_cols=203  Identities=17%  Similarity=0.133  Sum_probs=166.6

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCccc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFS-NNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~-~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...|.+|+.++++++|||||+++..+.     .+|||||+|+.+ ..+.....++++..++.++.||+.||.|||++ ||
T Consensus        70 ~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~-~i  148 (352)
T d1koba_          70 KYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH-SI  148 (352)
T ss_dssp             HHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            467889999999999999999995554     349999997644 55555667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEEC--CCCCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFD--DDVNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~--~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||||||+|||++  .++.+||+|||+++......   ...||+.|+|||++.+..++.++|||||||++|||+||..||
T Consensus       149 iHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf  228 (352)
T d1koba_         149 VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPF  228 (352)
T ss_dssp             ECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             eecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCC
Confidence            9999999999998  67899999999999876543   357899999999999999999999999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      .+.............  ........+..++.++.+||.+||+.||.+|||+.+++++
T Consensus       229 ~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         229 AGEDDLETLQNVKRC--DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             CCSSHHHHHHHHHHC--CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCCCHHHHHHHHHhC--CCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            764332211111111  1111223445678899999999999999999999999874

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=320.10  Aligned_cols=207  Identities=17%  Similarity=0.243  Sum_probs=157.3

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc------ccEeeecCCcccc-cccC---------------CCCCCCHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ------IPSYEFHCLTFSN-NFSG---------------ETQPMKWAMRLR   72 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~------~~v~Ey~~~~l~~-~~~~---------------~~~~l~~~~~~~   72 (401)
                      ..+.|+.|+..+.++ +|+||+.++....      ..|||||+|+.+. .+..               ....+++..++.
T Consensus        59 ~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  138 (299)
T d1ywna1          59 EHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC  138 (299)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHH
Confidence            456789999999888 5678887774322      3399999965443 3321               134589999999


Q ss_pred             HHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCC
Q 015733           73 VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPES  146 (401)
Q Consensus        73 i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  146 (401)
                      ++.||+.||+|||++ |||||||||+||||++++.+||+|||+++.....      ....||+.|+|||++.++.++.++
T Consensus       139 ~~~qi~~gl~ylH~~-~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s  217 (299)
T d1ywna1         139 YSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS  217 (299)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCccc
Confidence            999999999999999 9999999999999999999999999999864332      234689999999999999999999


Q ss_pred             cchhhHHHHHHHHhCCC-CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          147 VMYSFGTLLLDLLSGKH-IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       147 Dv~slG~~l~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      |||||||++|||+||.. ||......    ..+...+........|..+++++.+||.+||+.||++|||+.+|+++|+.
T Consensus       218 DiwS~Gvil~ellt~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~  293 (299)
T d1ywna1         218 DVWSFGVLLWEIFSLGASPYPGVKID----EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN  293 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTTCCCS----HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ceeehHHHHHHHHhCCCCCCCCCCHH----HHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence            99999999999999865 44332111    11112222233445677788999999999999999999999999999987


Q ss_pred             cc
Q 015733          226 LQ  227 (401)
Q Consensus       226 ~~  227 (401)
                      +.
T Consensus       294 il  295 (299)
T d1ywna1         294 LL  295 (299)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-42  Score=313.68  Aligned_cols=207  Identities=18%  Similarity=0.283  Sum_probs=162.2

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeee-ecc-----ccEeeecCCccccccc-C-CCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIF-MFQ-----IPSYEFHCLTFSNNFS-G-ETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~-~~~-----~~v~Ey~~~~l~~~~~-~-~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ..+.|.+|+.++++++||||+++++ +.+     .+||||++++.+..+. . ....+++..+++++.||+.||.|||+.
T Consensus        43 ~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~  122 (262)
T d1byga_          43 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN  122 (262)
T ss_dssp             --HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC
Confidence            4578999999999999999999984 322     3499999976444333 2 234689999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHh-CCCCC
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS-GKHIP  165 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~  165 (401)
                       +|+||||||+|||++.++.+||+|||+++..... ....+++.|+|||++.++.+++++|||||||++|||+| |..|+
T Consensus       123 -~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~  201 (262)
T d1byga_         123 -NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY  201 (262)
T ss_dssp             -TCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred             -ceeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCC
Confidence             9999999999999999999999999999875544 34567899999999999999999999999999999998 56555


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      .......     +...+....+.++|..+++++.+||.+||+.||.+|||+.+|++.|+.++.
T Consensus       202 ~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         202 PRIPLKD-----VVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             TTSCGGG-----HHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHH-----HHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            4432111     111122234556778888999999999999999999999999999988764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-42  Score=317.77  Aligned_cols=204  Identities=16%  Similarity=0.151  Sum_probs=164.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++|||||+++..+.     .+|||||+|+.+..+....+++++..+..++.||+.||+|||++ ||
T Consensus        56 ~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~-~i  134 (293)
T d1jksa_          56 SREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL-QI  134 (293)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhc-ce
Confidence            3578999999999999999999995554     34999999765554544556899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCC----CeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFDDDV----NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+|||++.++    .+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|||+||..
T Consensus       135 vHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~  214 (293)
T d1jksa_         135 AHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  214 (293)
T ss_dssp             ECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             eecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCC
Confidence            9999999999998876    4999999999876543   34578999999999999899999999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ||.+.............  ........+..++.++.+||.+||+.||.+|||+++++++
T Consensus       215 Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         215 PFLGDTKQETLANVSAV--NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             SSCCSSHHHHHHHHHTT--CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHhc--CCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            98764332211111110  0001111224567889999999999999999999999874

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-42  Score=322.78  Aligned_cols=199  Identities=15%  Similarity=0.153  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|++|+.++++++|||||+++..+.     ..||||+.|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        84 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~-~i  162 (350)
T d1rdqe_          84 QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL-DL  162 (350)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhC-CE
Confidence            3467999999999999999999985544     34999999775555554556899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCCchh
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHA  169 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  169 (401)
                      |||||||+|||++.+|.+||+|||+++..... .+..||+.|||||++.+..++.++|||||||++|||+||..||.+..
T Consensus       163 iHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~  242 (350)
T d1rdqe_         163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ  242 (350)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999986644 45679999999999999999999999999999999999999987653


Q ss_pred             hHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 015733          170 LDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-----NPRSLVT  221 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~~vl~  221 (401)
                      .........    ..  ...+|..+++++.+||.+||+.||.+|+     |++++++
T Consensus       243 ~~~~~~~i~----~~--~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         243 PIQIYEKIV----SG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHHH----HC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHh----cC--CCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            222211111    11  1235667888999999999999999994     8999986

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.6e-42  Score=314.47  Aligned_cols=208  Identities=16%  Similarity=0.190  Sum_probs=163.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSK   87 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~   87 (401)
                      ...|.+|+.++++++||||++++..+.         .+||||++|+.+..+....+++++.+++.++.||+.||+|||++
T Consensus        51 ~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~  130 (277)
T d1o6ya_          51 YLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN  130 (277)
T ss_dssp             HHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999884332         35999999876665555667899999999999999999999999


Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCccccccCccCCCCcchhhHHHHHHHHh
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t  160 (401)
                       ||+||||||+|||++.++.++++|||.+......       ....||+.|+|||++.+..++.++|||||||++|||+|
T Consensus       131 -~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyellt  209 (277)
T d1o6ya_         131 -GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT  209 (277)
T ss_dssp             -TEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             -CccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHh
Confidence             9999999999999999999999999988754322       24568999999999998899999999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHccc
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERP-NPRSLVTALVTLQ  227 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~~vl~~l~~~~  227 (401)
                      |+.||...............  .+.........++.++.++|.+||++||.+|| |++++++.|.++.
T Consensus       210 G~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         210 GEPPFTGDSPVSVAYQHVRE--DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             SSCSCCCSSHHHHHHHHHHC--CCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHHhc--CCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            99998764322211111111  01111123455788999999999999999999 8999999888764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-42  Score=317.43  Aligned_cols=209  Identities=15%  Similarity=0.195  Sum_probs=167.5

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccC---------------CCCCCCHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSG---------------ETQPMKWAMRLRV   73 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~---------------~~~~l~~~~~~~i   73 (401)
                      ..++|.+|+.+++++ +|||||++++...     ..||||++|+ +.+.+..               ....+++..+..+
T Consensus        53 ~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  132 (309)
T d1fvra_          53 DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF  132 (309)
T ss_dssp             --CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHH
Confidence            456899999999999 7999999994443     3499999965 4444432               2467999999999


Q ss_pred             HHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchh
Q 015733           74 ALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYS  150 (401)
Q Consensus        74 ~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  150 (401)
                      +.||+.||.|||++ ||+||||||+|||++.++.+||+|||+++.....   ....||..|+|||.+.++.++.++||||
T Consensus       133 ~~qia~gl~~lH~~-~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwS  211 (309)
T d1fvra_         133 AADVARGMDYLSQK-QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  211 (309)
T ss_dssp             HHHHHHHHHHHHHT-TEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHH
T ss_pred             HHHHHHHHHhhhcC-CccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeeh
Confidence            99999999999999 9999999999999999999999999999865433   2446889999999999999999999999


Q ss_pred             hHHHHHHHHhCCCC-CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccccC
Q 015733          151 FGTLLLDLLSGKHI-PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       151 lG~~l~el~tg~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |||++|||++|..| |.+.......     ..+....+.+.|..+++++.+||.+||+.||++|||+.+|++.|+++.+.
T Consensus       212 fGvil~ell~~~~~p~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         212 YGVLLWEIVSLGGTPYCGMTCAELY-----EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             HHHHHHHHHTTSCCTTTTCCHHHHH-----HHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHhcCCCCCCCCCHHHHH-----HHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            99999999998754 4332221111     11122234556778899999999999999999999999999999988754


Q ss_pred             C
Q 015733          230 T  230 (401)
Q Consensus       230 ~  230 (401)
                      .
T Consensus       287 ~  287 (309)
T d1fvra_         287 R  287 (309)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=313.22  Aligned_cols=205  Identities=18%  Similarity=0.189  Sum_probs=163.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .+.|.+|+.++++++|||||+++..+.     .+||||+.|++...+...+..+++..+..++.||+.||+|||++ ||+
T Consensus        44 ~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~-~ii  122 (299)
T d1ua2a_          44 NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH-WIL  122 (299)
T ss_dssp             CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc-cee
Confidence            457999999999999999999995555     34999999887777777778899999999999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      ||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++... .++.++|||||||++|||+||..||.
T Consensus       123 HrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~  202 (299)
T d1ua2a_         123 HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLP  202 (299)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCC
Confidence            9999999999999999999999999875443    245689999999998764 57999999999999999999998886


Q ss_pred             chhhHHhhhccccc--------------cccccc---cCCC-----ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          167 SHALDLIRDRNIQT--------------LTDSCL---EGQF-----SSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       167 ~~~~~~~~~~~~~~--------------~~~~~~---~~~~-----~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +.............              ......   ....     ....+.++.+||.+||+.||.+|||+.|++++
T Consensus       203 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         203 GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence            54321111000000              000000   0001     12456789999999999999999999999864

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.4e-41  Score=307.12  Aligned_cols=204  Identities=16%  Similarity=0.163  Sum_probs=164.5

Q ss_pred             hhHHHHHHHHHHhhhC-CCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMS-SFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~-h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .++.|.+|+.++++++ ||||++++..+.     .+|||||+|+.+..+....+++++..+..++.||+.||+|||++ |
T Consensus        52 ~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~-~  130 (277)
T d1phka_          52 LREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL-N  130 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            4567999999999997 999999995555     34999999754444444567899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCcccccc------CccCCCCcchhhHHHHHHHHh
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT------GRVTPESVMYSFGTLLLDLLS  160 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~~l~el~t  160 (401)
                      |+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||.+.+      ..++.++||||+||++|||+|
T Consensus       131 ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~  210 (277)
T d1phka_         131 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA  210 (277)
T ss_dssp             EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhcc
Confidence            999999999999999999999999999876543   34568999999999864      347889999999999999999


Q ss_pred             CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          161 GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       161 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |+.||.+.............-  ..........+++++.+|+.+||+.||.+|||+.+|+++
T Consensus       211 g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         211 GSPPFWHRKQMLMLRMIMSGN--YQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             SSCSSCCSSHHHHHHHHHHTC--CCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CCCCCCCCCHHHHHHHHHhCC--CCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            999997654332221111110  111223345688899999999999999999999999763

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-41  Score=310.96  Aligned_cols=207  Identities=18%  Similarity=0.268  Sum_probs=168.5

Q ss_pred             hhhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCc-ccccccCC---------------CCCCCHHHHHH
Q 015733           15 LQSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGE---------------TQPMKWAMRLR   72 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~---------------~~~l~~~~~~~   72 (401)
                      ....+|.+|+..+.++ +|||||.++..+.     ..|||||+++ +...+...               ...+++.+++.
T Consensus        60 ~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (299)
T d1fgka_          60 KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVS  139 (299)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHH
Confidence            3457899999999988 7999999984433     2399999965 44444322               24689999999


Q ss_pred             HHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCC
Q 015733           73 VALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPES  146 (401)
Q Consensus        73 i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  146 (401)
                      ++.||+.||+|||+. +||||||||+|||++.++.+||+|||+++.....      ....+++.|+|||.+.++.++.++
T Consensus       140 ~~~qi~~al~ylH~~-~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~  218 (299)
T d1fgka_         140 CAYQVARGMEYLASK-KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQS  218 (299)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHhhhC-CEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchh
Confidence            999999999999999 9999999999999999999999999999865432      234678999999999999999999


Q ss_pred             cchhhHHHHHHHHh-CCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          147 VMYSFGTLLLDLLS-GKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       147 Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      ||||||||+|||+| |..||.+.....     ....+........|..+++++.+||.+||+.||++|||+.+|++.|++
T Consensus       219 DiwS~Gvvl~ell~~g~~p~~~~~~~~-----~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~  293 (299)
T d1fgka_         219 DVWSFGVLLWEIFTLGGSPYPGVPVEE-----LFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR  293 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             hhHHhHHHHHHhccCCCCCCCCCCHHH-----HHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHH
Confidence            99999999999998 566665433221     112223334456677788999999999999999999999999999988


Q ss_pred             cc
Q 015733          226 LQ  227 (401)
Q Consensus       226 ~~  227 (401)
                      +.
T Consensus       294 i~  295 (299)
T d1fgka_         294 IV  295 (299)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-41  Score=312.03  Aligned_cols=205  Identities=16%  Similarity=0.139  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHHhhh-CCCeEEEeeeecc---------ccEeeecCCc-ccccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASM-SSFILLAVIFMFQ---------IPSYEFHCLT-FSNNFSGE-TQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        17 ~~~f~~E~~~l~~~-~h~niv~~~~~~~---------~~v~Ey~~~~-l~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ...+.+|+.++.++ +|||||+++..++         .+|||||+|+ |...+... ..++++.++..++.||+.||+||
T Consensus        48 ~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~yl  127 (335)
T d2ozaa1          48 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  127 (335)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            36678899987655 7999999885442         4599999975 55555433 46799999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECC---CCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           85 TSKERALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                      |++ ||+||||||+|||++.   ++.+||+|||+++.....   ....||+.|+|||++.+..++.++|||||||++|+|
T Consensus       128 H~~-~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~l  206 (335)
T d2ozaa1         128 HSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL  206 (335)
T ss_dssp             HHT-TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHH
T ss_pred             HHc-CCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHH
Confidence            999 9999999999999985   567999999999875443   345789999999999998999999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhcccccccccccc--CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTLTDSCLE--GQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      +||+.||.+.............+......  ......+++++.+||.+||+.||++|||+.+++.+
T Consensus       207 ltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         207 LCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             TTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            99999986542211111111111111111  11123567889999999999999999999999874

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-41  Score=311.69  Aligned_cols=208  Identities=16%  Similarity=0.269  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHHHhhh-CCCeEEEeeeecc-----ccEeeecCCcccccccC------------------CCCCCCHHHHH
Q 015733           16 QSTYFIVSLVLIASM-SSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSG------------------ETQPMKWAMRL   71 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~-~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~------------------~~~~l~~~~~~   71 (401)
                      ...+|.+|+.+++++ +|||||++++...     .+|||||+|+.+..+..                  ....+++..+.
T Consensus        69 ~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (311)
T d1t46a_          69 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLL  148 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHH
Confidence            456899999999999 6999999995544     34999999764433321                  23468999999


Q ss_pred             HHHHHHHHHHHHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCCC------ccccccccCCccccccCccCCC
Q 015733           72 RVALHIAEALEYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR------SYSTNLAFTPPEYLRTGRVTPE  145 (401)
Q Consensus        72 ~i~~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~  145 (401)
                      .++.||+.||+|||++ |+|||||||+||+++.++.+|++|||+++......      ...||+.|+|||.+.++.++.+
T Consensus       149 ~~~~qi~~gl~~LH~~-~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  227 (311)
T d1t46a_         149 SFSYQVAKGMAFLASK-NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE  227 (311)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHHHHHhC-CeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCc
Confidence            9999999999999999 99999999999999999999999999998755432      3457899999999999999999


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHc
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVT  225 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~  225 (401)
                      +|||||||++|||+|++.||.....   ....+..++....+...|..++..+.+||.+||+.||.+|||+.+|++.|++
T Consensus       228 ~DIwS~G~~l~ellt~g~p~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~  304 (311)
T d1t46a_         228 SDVWSYGIFLWELFSLGSSPYPGMP---VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK  304 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSTTCC---SSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHhCCCCCCCCCC---HHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence            9999999999999996555433210   1111223334444555677788999999999999999999999999999986


Q ss_pred             cc
Q 015733          226 LQ  227 (401)
Q Consensus       226 ~~  227 (401)
                      ..
T Consensus       305 ~i  306 (311)
T d1t46a_         305 QI  306 (311)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-41  Score=317.25  Aligned_cols=197  Identities=17%  Similarity=0.170  Sum_probs=157.3

Q ss_pred             HHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Q 015733           22 VSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERALYHDLN   96 (401)
Q Consensus        22 ~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~dlk   96 (401)
                      .|+.+++.++|||||+++..+.     .+|||||+|+.+..+......+++..+..++.||+.||.|||++ ||||||||
T Consensus        56 ~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~-~iiHrDlK  134 (364)
T d1omwa3          56 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLK  134 (364)
T ss_dssp             HHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCS
T ss_pred             HHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHC-Cccceeec
Confidence            3466777788999999885544     34999999765555555567899999999999999999999999 99999999


Q ss_pred             CCCEEECCCCCeEEecccCccccCCC--CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCCCchhhHHh
Q 015733           97 AYRIVFDDDVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLI  173 (401)
Q Consensus        97 ~~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~  173 (401)
                      |+|||++.+|.+||+|||+++.....  ....||+.|+|||++.. ..++.++|||||||++|||+||+.||........
T Consensus       135 P~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~  214 (364)
T d1omwa3         135 PANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK  214 (364)
T ss_dssp             GGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCH
T ss_pred             cceeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            99999999999999999999876543  34679999999999975 4689999999999999999999999865321110


Q ss_pred             hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 015733          174 RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVTA  222 (401)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~~  222 (401)
                      .. .....  ......+|..+++++.+||.+||+.||.+|||     +++++++
T Consensus       215 ~~-~~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         215 HE-IDRMT--LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             HH-HHHHS--SSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             HH-HHHhc--ccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence            00 00000  01123456678889999999999999999999     6888763

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-41  Score=311.62  Aligned_cols=198  Identities=18%  Similarity=0.195  Sum_probs=163.4

Q ss_pred             hHHHHHHHHHHh-hhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIA-SMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~-~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.++.|..++. .++|||||.++..+.     .+|||||+|+.+..+......+++..+..++.||+.||.|||++ ||
T Consensus        46 ~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~-~i  124 (320)
T d1xjda_          46 VECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK-GI  124 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            456788887765 689999999995544     34999999765555555667899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPP  166 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  166 (401)
                      +||||||+|||+++++.+||+|||+++.....    ....||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus       125 iHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~  204 (320)
T d1xjda_         125 VYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH  204 (320)
T ss_dssp             BCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             eeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCC
Confidence            99999999999999999999999999864432    34578999999999999999999999999999999999999997


Q ss_pred             chhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 015733          167 SHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR-SLVT  221 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-~vl~  221 (401)
                      +............      -...+|..+++++.+||.+||+.||.+|||+. ++++
T Consensus       205 ~~~~~~~~~~i~~------~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         205 GQDEEELFHSIRM------DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             CSSHHHHHHHHHH------CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             CCCHHHHHHHHHc------CCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence            6543322211111      12345677889999999999999999999985 6754

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=306.36  Aligned_cols=206  Identities=15%  Similarity=0.233  Sum_probs=165.3

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccc-cC---------CCCCCCHHHHHHHHHHHHHHH
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNF-SG---------ETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~-~~---------~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...|.+|+.++++++||||+++++.+.     .+||||++++.+..+ ..         ....+++..+.+++.|++.||
T Consensus        67 ~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl  146 (308)
T d1p4oa_          67 RIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGM  146 (308)
T ss_dssp             HHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            457999999999999999999995443     349999996544333 21         234579999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC------CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      .|||++ +|+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||.+.++.++.++|||||||++
T Consensus       147 ~~LH~~-~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il  225 (308)
T d1p4oa_         147 AYLNAN-KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL  225 (308)
T ss_dssp             HHHHHT-TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHhhC-CeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHH
Confidence            999999 9999999999999999999999999999865432      223578999999999999999999999999999


Q ss_pred             HHHHhCCC-CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          156 LDLLSGKH-IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       156 ~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      |||+||.. |+.+.....    ....+.+ ....+.|..++..+.+||.+||+.||++|||+.+|++.|++...
T Consensus       226 ~El~t~~~~p~~~~~~~~----~~~~i~~-~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         226 WEIATLAEQPYQGLSNEQ----VLRFVME-GGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HHHHHTSCCTTTTSCHHH----HHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHhCCCCCCCCCCHHH----HHHHHHh-CCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            99999964 443322111    1111222 22344567788899999999999999999999999999987643

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=306.92  Aligned_cols=204  Identities=16%  Similarity=0.188  Sum_probs=163.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCc-ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLT-FSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~-l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ....|.+|+.++.+++|||||+++..++     .+|||||+|+ +...+...+.++++.++..++.||+.||.|||++ |
T Consensus        44 ~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~-~  122 (321)
T d1tkia_          44 DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH-N  122 (321)
T ss_dssp             HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            4467889999999999999999995555     3499999975 5555554556899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCC--CCeEEecccCccccCCCC---ccccccccCCccccccCccCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDD--VNPRLSCFGLMKNSRDGR---SYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~--~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.+  +.+||+|||+++......   ...+|+.|+|||.+.+..++.++||||+||++|+|++|..|
T Consensus       123 iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~P  202 (321)
T d1tkia_         123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP  202 (321)
T ss_dssp             EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCC
Confidence            9999999999999854  579999999998865543   34689999999999999999999999999999999999999


Q ss_pred             CCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          165 PPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      |.................  .+.......++.++.+||.+||..||.+|||+.+++++
T Consensus       203 f~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         203 FLAETNQQIIENIMNAEY--TFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             TCCSSHHHHHHHHHHTCC--CCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhCCC--CCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            876543322211111100  00001112467789999999999999999999999874

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=301.66  Aligned_cols=192  Identities=20%  Similarity=0.269  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHhhhC--CCeEEEeeeecc-----ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           18 TYFIVSLVLIASMS--SFILLAVIFMFQ-----IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        18 ~~f~~E~~~l~~~~--h~niv~~~~~~~-----~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..|.+|+.++++++  ||||++++..+.     ..||||+.+ +++..+......+++..+..++.||+.||+|||++ |
T Consensus        52 ~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~-~  130 (273)
T d1xwsa_          52 TRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC-G  130 (273)
T ss_dssp             CEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            45789999999997  899999995554     349999985 44444444567899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECC-CCCeEEecccCccccCCC--CccccccccCCccccccCcc-CCCCcchhhHHHHHHHHhCCCCC
Q 015733           90 ALYHDLNAYRIVFDD-DVNPRLSCFGLMKNSRDG--RSYSTNLAFTPPEYLRTGRV-TPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        90 ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |+||||||+|||++. ++.+||+|||+++.....  .+..||+.|+|||++.+..+ +.++|||||||++|||+||+.||
T Consensus       131 iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf  210 (273)
T d1xwsa_         131 VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF  210 (273)
T ss_dssp             EECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCC
Confidence            999999999999985 478999999999875543  45679999999999987665 66789999999999999999998


Q ss_pred             CchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          166 PSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ...... . ..          ...++..++.++.+||.+||+.||.+|||+++++++
T Consensus       211 ~~~~~i-~-~~----------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         211 EHDEEI-I-RG----------QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             CSHHHH-H-HC----------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCchHH-h-hc----------ccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            754211 0 00          113455677899999999999999999999999864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-40  Score=301.81  Aligned_cols=206  Identities=14%  Similarity=0.157  Sum_probs=160.9

Q ss_pred             hhHHHHHHHHHHhhh---CCCeEEEeeeecc----------ccEeeecCCcccccc-cCCCCCCCHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASM---SSFILLAVIFMFQ----------IPSYEFHCLTFSNNF-SGETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~---~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~-~~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ....+.+|+.+++.+   +||||++++..+.          .++|||++++++... ......+++..+..++.|++.||
T Consensus        50 ~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  129 (305)
T d1blxa_          50 MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGL  129 (305)
T ss_dssp             CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHH
Confidence            345677888877766   7999999874331          349999998755433 34567799999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  158 (401)
                      +|||++ |||||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..++.++||||+||++|||
T Consensus       130 ~yLH~~-~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~el  208 (305)
T d1blxa_         130 DFLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEM  208 (305)
T ss_dssp             HHHHHT-TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CEEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHH
Confidence            999999 9999999999999999999999999998875433   356789999999999999999999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhccccc------------------cc---cccccCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 015733          159 LSGKHIPPSHALDLIRDRNIQT------------------LT---DSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPR  217 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  217 (401)
                      +||+.||.+.............                  ..   .......++...+..+.+||.+||++||.+|||+.
T Consensus       209 l~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~  288 (305)
T d1blxa_         209 FRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY  288 (305)
T ss_dssp             HHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             HHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHH
Confidence            9999998764321110000000                  00   00001123445678899999999999999999999


Q ss_pred             HHHHH
Q 015733          218 SLVTA  222 (401)
Q Consensus       218 ~vl~~  222 (401)
                      |++++
T Consensus       289 e~L~H  293 (305)
T d1blxa_         289 SALSH  293 (305)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=299.52  Aligned_cols=206  Identities=15%  Similarity=0.226  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccc-cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNF-SGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~-~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ..+.|.+|+.++++++|||||+++..++     .+||||+.+++...+ ......+++..+..++.||+.||.|||++ |
T Consensus        44 ~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~-~  122 (298)
T d1gz8a_          44 VPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-R  122 (298)
T ss_dssp             CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC-C
Confidence            4578999999999999999999995555     349999998755554 34567799999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      ||||||||+|||++.++.+||+|||+++.....    ....||+.|+|||.+.... ++.++||||+||++|+|++|+.|
T Consensus       123 IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~P  202 (298)
T d1gz8a_         123 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL  202 (298)
T ss_dssp             CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             EEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCC
Confidence            999999999999999999999999999875433    3347899999999887655 58899999999999999999999


Q ss_pred             CCchhhHHhhhcc-----------ccccc-cccccCC-----------CChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          165 PPSHALDLIRDRN-----------IQTLT-DSCLEGQ-----------FSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       165 ~~~~~~~~~~~~~-----------~~~~~-~~~~~~~-----------~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      |.+..........           ..... .+.....           .....+.++.+|+.+||..||.+|||+.++++
T Consensus       203 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         203 FPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            8654211110000           00000 0000000           01235678999999999999999999999987


Q ss_pred             H
Q 015733          222 A  222 (401)
Q Consensus       222 ~  222 (401)
                      +
T Consensus       283 H  283 (298)
T d1gz8a_         283 H  283 (298)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.4e-39  Score=297.78  Aligned_cols=205  Identities=13%  Similarity=0.217  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ..+.|.+|+.++++++||||++++..+.     ..+|||+.++++..+....+.+++..+..++.||+.||+|||+. ||
T Consensus        43 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~I  121 (286)
T d1ob3a_          43 IPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR-RV  121 (286)
T ss_dssp             CCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccC-cE
Confidence            3578999999999999999999995544     33999999988888877788999999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC----CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhCCCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG----RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSGKHIP  165 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg~~p~  165 (401)
                      |||||||+|||++.++.+||+|||.+......    ....+++.|+|||.+.+ ..++.++|||||||++|||++|+.||
T Consensus       122 vHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf  201 (286)
T d1ob3a_         122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLF  201 (286)
T ss_dssp             CCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             EecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCC
Confidence            99999999999999999999999998875443    33467899999999876 45799999999999999999999998


Q ss_pred             CchhhHHhhhcc--------------cccc---------ccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 015733          166 PSHALDLIRDRN--------------IQTL---------TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVT  221 (401)
Q Consensus       166 ~~~~~~~~~~~~--------------~~~~---------~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~  221 (401)
                      .+..........              ....         ..+.....++...++.+.+||.+||+.||++|||++|+++
T Consensus       202 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         202 PGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            653211110000              0000         0000011233456788999999999999999999999985

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=300.23  Aligned_cols=211  Identities=11%  Similarity=0.119  Sum_probs=155.6

Q ss_pred             HHHHH--HHHHHhhhCCCeEEEeeeecc---------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           18 TYFIV--SLVLIASMSSFILLAVIFMFQ---------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        18 ~~f~~--E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      +.+..  |+..+++++|||||++++...         .+|||||+++.+..+.. ..+++|..+++++.|++.||.|||+
T Consensus        40 ~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-~~~l~~~~~~~~~~~ia~gl~~lH~  118 (303)
T d1vjya_          40 RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-RYTVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH-HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444  455557889999999884322         25999999654444443 3469999999999999999999996


Q ss_pred             C-------CCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC------ccCCC
Q 015733           87 K-------ERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG------RVTPE  145 (401)
Q Consensus        87 ~-------~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~------~~~~~  145 (401)
                      .       .|||||||||+||||+.++.+||+|||+++.....        ....||+.|+|||++.+.      .++.+
T Consensus       119 ~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k  198 (303)
T d1vjya_         119 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKR  198 (303)
T ss_dssp             CBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHH
T ss_pred             hhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcc
Confidence            2       28999999999999999999999999999875432        234689999999998753      36779


Q ss_pred             CcchhhHHHHHHHHhCCCCCCchhhHH--h---------hhccccccccccccCCCC-----hHHHHHHHHHHHHhcccC
Q 015733          146 SVMYSFGTLLLDLLSGKHIPPSHALDL--I---------RDRNIQTLTDSCLEGQFS-----SDEGTELVRLASRCLQYE  209 (401)
Q Consensus       146 ~Dv~slG~~l~el~tg~~p~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~-----~~~~~~l~~li~~cl~~~  209 (401)
                      +|||||||++|||+||..|+.......  .         .......+.....++.++     ...+..+.+|+.+||+.|
T Consensus       199 ~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~d  278 (303)
T d1vjya_         199 ADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYAN  278 (303)
T ss_dssp             HHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSS
T ss_pred             hhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccC
Confidence            999999999999999987753311000  0         000011112222223332     235677999999999999


Q ss_pred             CCCCCCHHHHHHHHHccccC
Q 015733          210 PRERPNPRSLVTALVTLQKD  229 (401)
Q Consensus       210 p~~Rps~~~vl~~l~~~~~~  229 (401)
                      |.+|||+.+|++.|+.+...
T Consensus       279 p~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         279 GAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             GGGSCCHHHHHHHHHHHHHH
T ss_pred             HhHCcCHHHHHHHHHHHHHh
Confidence            99999999999999887654

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=296.65  Aligned_cols=209  Identities=19%  Similarity=0.211  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCccccccc---CCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           18 TYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFS---GETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        18 ~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~---~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ..+.+|+.++++++||||+.++..+.           .+|||||++++...+.   .....+++..+..++.||+.||+|
T Consensus        58 ~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~y  137 (350)
T d1q5ka_          58 RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY  137 (350)
T ss_dssp             SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            34557999999999999999874431           3599999987554443   356789999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCC-CeEEecccCccccCCC---CccccccccCCcccccc-CccCCCCcchhhHHHHHHH
Q 015733           84 CTSKERALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el  158 (401)
                      ||++ ||+||||||+|||++.++ .+||+|||+++.....   .+..||+.|+|||.+.+ ..++.++||||+||++|||
T Consensus       138 LH~~-~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el  216 (350)
T d1q5ka_         138 IHSF-GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAEL  216 (350)
T ss_dssp             HHTT-TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             HHhc-CCcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEeh
Confidence            9999 999999999999999775 8999999999875443   34578999999998875 5689999999999999999


Q ss_pred             HhCCCCCCchhhHHhhhcc-----------------------ccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          159 LSGKHIPPSHALDLIRDRN-----------------------IQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ++|..||............                       ........+........++++.+||.+||+.||.+|||
T Consensus       217 ~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t  296 (350)
T d1q5ka_         217 LLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT  296 (350)
T ss_dssp             HHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             hhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC
Confidence            9999998654221110000                       00000000111123456788999999999999999999


Q ss_pred             HHHHHHH--HHccc
Q 015733          216 PRSLVTA--LVTLQ  227 (401)
Q Consensus       216 ~~~vl~~--l~~~~  227 (401)
                      +.|++++  ++.+.
T Consensus       297 a~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         297 PLEACAHSFFDELR  310 (350)
T ss_dssp             HHHHHTSGGGGGGG
T ss_pred             HHHHhcCHhhcccc
Confidence            9999874  44443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-38  Score=293.67  Aligned_cols=210  Identities=13%  Similarity=0.122  Sum_probs=162.3

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEee-eecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVI-FMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~-~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      ...+|..|+.+++.++|+|++..+ .+..     ..||||+++++...+....+.+++..+..++.|++.||+|||++ |
T Consensus        45 ~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~  123 (299)
T d1ckia_          45 KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK-N  123 (299)
T ss_dssp             TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHC-C
Confidence            345789999999999988755444 2222     34999999888777776778899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECC---CCCeEEecccCccccCCC-----------CccccccccCCccccccCccCCCCcchhhHHHH
Q 015733           90 ALYHDLNAYRIVFDD---DVNPRLSCFGLMKNSRDG-----------RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        90 ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      ||||||||+|||++.   +..+||+|||+++.....           ....||+.|+|||++.+..++.++|||||||++
T Consensus       124 iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l  203 (299)
T d1ckia_         124 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  203 (299)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHH
T ss_pred             eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHH
Confidence            999999999999864   557999999999875432           234689999999999998999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHhhhccccccccccc---cCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHccc
Q 015733          156 LDLLSGKHIPPSHALDLIRDRNIQTLTDSCL---EGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQ  227 (401)
Q Consensus       156 ~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~  227 (401)
                      |||+||..||........... .........   ....+..++.++.++|..||+.+|++||++.++.+.|+.+.
T Consensus       204 ~el~tg~~P~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~  277 (299)
T d1ckia_         204 MYFNLGSLPWQGLKAATKRQK-YERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF  277 (299)
T ss_dssp             HHHHHSSCTTCCCC--------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCcccccchHHHHHH-HHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence            999999999865322111100 000000000   11123456788999999999999999999999988887653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=289.67  Aligned_cols=208  Identities=13%  Similarity=0.148  Sum_probs=161.0

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-------------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-------------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEAL   81 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-------------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l   81 (401)
                      ...+.+++|+.++++++|||++.++..+.             .+||||+.+++...+......++...++.++.||+.||
T Consensus        51 ~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l  130 (318)
T d3blha1          51 GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGL  130 (318)
T ss_dssp             SSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHH
Confidence            34567999999999999999999884321             34999999887777777778899999999999999999


Q ss_pred             HHHhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC--------CccccccccCCccccccC-ccCCCCcchhhH
Q 015733           82 EYCTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG--------RSYSTNLAFTPPEYLRTG-RVTPESVMYSFG  152 (401)
Q Consensus        82 ~~lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG  152 (401)
                      .|||++ ||+||||||+|||++.++.+||+|||+++.....        .+.+||+.|+|||++.+. .++.++||||+|
T Consensus       131 ~~lH~~-~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlG  209 (318)
T d3blha1         131 YYIHRN-KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAG  209 (318)
T ss_dssp             HHHHHT-TEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHH
T ss_pred             HHhccC-CEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCC
Confidence            999999 9999999999999999999999999999764421        234689999999998764 689999999999


Q ss_pred             HHHHHHHhCCCCCCchhhHHhhhcccc-----------ccc--------cccccCCCC-------hHHHHHHHHHHHHhc
Q 015733          153 TLLLDLLSGKHIPPSHALDLIRDRNIQ-----------TLT--------DSCLEGQFS-------SDEGTELVRLASRCL  206 (401)
Q Consensus       153 ~~l~el~tg~~p~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~~-------~~~~~~l~~li~~cl  206 (401)
                      |++|||+||+.||.+............           ...        ........+       ...++.+.+||.+||
T Consensus       210 vil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL  289 (318)
T d3blha1         210 CIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLL  289 (318)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHS
T ss_pred             ceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHC
Confidence            999999999999865321111000000           000        000000000       012456789999999


Q ss_pred             ccCCCCCCCHHHHHHHH
Q 015733          207 QYEPRERPNPRSLVTAL  223 (401)
Q Consensus       207 ~~~p~~Rps~~~vl~~l  223 (401)
                      +.||++|||++|++++=
T Consensus       290 ~~dP~~R~sa~elL~Hp  306 (318)
T d3blha1         290 VLDPAQRIDSDDALNHD  306 (318)
T ss_dssp             CSSTTTSCCHHHHHHSG
T ss_pred             cCChhHCcCHHHHHcCh
Confidence            99999999999999753

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-38  Score=294.96  Aligned_cols=204  Identities=14%  Similarity=0.196  Sum_probs=161.1

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEY   83 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~   83 (401)
                      ...+.+++|+.++++++|||+|+++..+.           .+||||+++.+.....  ..++++..++.++.||+.||+|
T Consensus        59 ~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~--~~~l~~~~~~~~~~qi~~aL~~  136 (346)
T d1cm8a_          59 LFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMK--HEKLGEDRIQFLVYQMLKGLRY  136 (346)
T ss_dssp             HHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecccccHHHHHH--hccccHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999884432           4599999665555443  3569999999999999999999


Q ss_pred             HhcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCcccccc-CccCCCCcchhhHHHHHHHHhC
Q 015733           84 CTSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        84 lH~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      ||++ ||+||||||+|||++.++.+|++|||+++..... +...||+.|+|||.+.+ ..++.++||||+||++|+|++|
T Consensus       137 LH~~-~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g  215 (346)
T d1cm8a_         137 IHAA-GIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITG  215 (346)
T ss_dssp             HHHT-TEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHS
T ss_pred             HHhC-CCcccccCcchhhcccccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHC
Confidence            9999 9999999999999999999999999999886554 44678999999999876 4578999999999999999999


Q ss_pred             CCCCCchhhHHhhhc--------------------------cccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC
Q 015733          162 KHIPPSHALDLIRDR--------------------------NIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN  215 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps  215 (401)
                      ..||.+.........                          ......... ........++.+.+||.+||..||.+|||
T Consensus       216 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~dli~~mL~~dP~~R~t  294 (346)
T d1cm8a_         216 KTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKD-FASILTNASPLAVNLLEKMLVLDAEQRVT  294 (346)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC-GGGTCTTCCHHHHHHHHHHSCSSTTTSCC
T ss_pred             cCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccc-hHHhccCCCHHHHHHHHHHCcCChhHCcC
Confidence            999865321110000                          000000000 01223456788999999999999999999


Q ss_pred             HHHHHHH
Q 015733          216 PRSLVTA  222 (401)
Q Consensus       216 ~~~vl~~  222 (401)
                      +.+++++
T Consensus       295 a~eiL~H  301 (346)
T d1cm8a_         295 AGEALAH  301 (346)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999984

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=289.40  Aligned_cols=203  Identities=14%  Similarity=0.201  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHhhhCCCeEEEeeeecc---------ccEeeecCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           17 STYFIVSLVLIASMSSFILLAVIFMFQ---------IPSYEFHCL-TFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h~niv~~~~~~~---------~~v~Ey~~~-~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      .+.|++|+.++++++|||+++++....         ..+++|+.| +|...+.  ...+++..+..++.||+.||+|||+
T Consensus        50 ~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~--~~~l~~~~i~~i~~qil~al~yLH~  127 (345)
T d1pmea_          50 CQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK--TQHLSNDHICYFLYQILRGLKYIHS  127 (345)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhh--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999998874332         125566665 4554443  3469999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCCCeEEecccCccccCCC-------CccccccccCCcccccc-CccCCCCcchhhHHHHHHH
Q 015733           87 KERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-------RSYSTNLAFTPPEYLRT-GRVTPESVMYSFGTLLLDL  158 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~~l~el  158 (401)
                      + |||||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++.. ..++.++||||+||++|+|
T Consensus       128 ~-~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~em  206 (345)
T d1pmea_         128 A-NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM  206 (345)
T ss_dssp             T-TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHH
T ss_pred             C-CCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHH
Confidence            9 9999999999999999999999999999864332       33468999999999855 4578899999999999999


Q ss_pred             HhCCCCCCchhhHHhhhcccccc----------------------cccccc---CCCChHHHHHHHHHHHHhcccCCCCC
Q 015733          159 LSGKHIPPSHALDLIRDRNIQTL----------------------TDSCLE---GQFSSDEGTELVRLASRCLQYEPRER  213 (401)
Q Consensus       159 ~tg~~p~~~~~~~~~~~~~~~~~----------------------~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~R  213 (401)
                      ++|+.||................                      ......   .......+.++.+|+.+||+.||.+|
T Consensus       207 l~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  286 (345)
T d1pmea_         207 LSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKR  286 (345)
T ss_dssp             HHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTS
T ss_pred             hhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHC
Confidence            99999986532111100000000                      000000   00122346789999999999999999


Q ss_pred             CCHHHHHHH
Q 015733          214 PNPRSLVTA  222 (401)
Q Consensus       214 ps~~~vl~~  222 (401)
                      ||+.+++++
T Consensus       287 ~ta~e~L~h  295 (345)
T d1pmea_         287 IEVEQALAH  295 (345)
T ss_dssp             CCHHHHHTS
T ss_pred             cCHHHHhcC
Confidence            999999874

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=9.6e-37  Score=284.32  Aligned_cols=204  Identities=15%  Similarity=0.167  Sum_probs=157.4

Q ss_pred             hhhHHHHHHHHHHhhhC-CCeEEEeeeecc-------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 015733           15 LQSTYFIVSLVLIASMS-SFILLAVIFMFQ-------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTS   86 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~-h~niv~~~~~~~-------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~   86 (401)
                      ...+++.+|+.++.+++ ||||++++..+.       ..|||||+++.+..+.   +.+++..+..++.||+.||.|||+
T Consensus        71 ~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~---~~l~e~~i~~i~~qil~aL~~LH~  147 (328)
T d3bqca1          71 VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY---QTLTDYDIRFYMYEILKALDYCHS  147 (328)
T ss_dssp             SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT---TSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh---cCCCHHHHHHHHHHHHHHHHHHhh
Confidence            34578999999999996 999999885433       2399999977655543   469999999999999999999999


Q ss_pred             CCCceeccCCCCCEEECCCC-CeEEecccCccccCCC---CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhC
Q 015733           87 KERALYHDLNAYRIVFDDDV-NPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        87 ~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg  161 (401)
                      + ||+||||||+|||++.++ .+||+|||+++.....   ....+|+.|+|||.+.+. .++.++||||+||++||+++|
T Consensus       148 ~-gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g  226 (328)
T d3bqca1         148 M-GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFR  226 (328)
T ss_dssp             T-TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHT
T ss_pred             c-ccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccC
Confidence            9 999999999999998655 5899999999876543   345689999999998875 479999999999999999999


Q ss_pred             CCCCCchhhHHh------------------hhcc------ccccc--------cccccCCCChHHHHHHHHHHHHhcccC
Q 015733          162 KHIPPSHALDLI------------------RDRN------IQTLT--------DSCLEGQFSSDEGTELVRLASRCLQYE  209 (401)
Q Consensus       162 ~~p~~~~~~~~~------------------~~~~------~~~~~--------~~~~~~~~~~~~~~~l~~li~~cl~~~  209 (401)
                      +.||........                  ....      .....        ...........+++++.+||.+||..|
T Consensus       227 ~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d  306 (328)
T d3bqca1         227 KEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYD  306 (328)
T ss_dssp             CSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSS
T ss_pred             CCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCC
Confidence            999854211000                  0000      00000        001111122346788999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 015733          210 PRERPNPRSLVTA  222 (401)
Q Consensus       210 p~~Rps~~~vl~~  222 (401)
                      |.+|||++|++++
T Consensus       307 P~~R~ta~e~L~H  319 (328)
T d3bqca1         307 HQSRLTAREAMEH  319 (328)
T ss_dssp             GGGSCCHHHHHTS
T ss_pred             hhHCcCHHHHhcC
Confidence            9999999999873

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.4e-37  Score=281.73  Aligned_cols=211  Identities=9%  Similarity=0.048  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHhhhCC-CeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSS-FILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h-~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      ...+.+|+..+..++| +|++.++....     ..||||+.+++...+......+++..+..++.|++.||+|||++ ||
T Consensus        44 ~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~-gi  122 (293)
T d1csna_          44 APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK-SL  122 (293)
T ss_dssp             SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT-TE
T ss_pred             cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            4567889999999977 66666553333     34999998888887776677899999999999999999999999 99


Q ss_pred             eeccCCCCCEEECC-----CCCeEEecccCccccCC-----------CCccccccccCCccccccCccCCCCcchhhHHH
Q 015733           91 LYHDLNAYRIVFDD-----DVNPRLSCFGLMKNSRD-----------GRSYSTNLAFTPPEYLRTGRVTPESVMYSFGTL  154 (401)
Q Consensus        91 vH~dlk~~Nill~~-----~~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  154 (401)
                      +||||||+|||++.     ++.+||+|||+++....           .....||+.|+|||++.+..++.++|||||||+
T Consensus       123 iHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~  202 (293)
T d1csna_         123 VYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHV  202 (293)
T ss_dssp             ECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             eeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHH
Confidence            99999999999974     57899999999987432           123468999999999999899999999999999


Q ss_pred             HHHHHhCCCCCCchhhHHh--hhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHcccc
Q 015733          155 LLDLLSGKHIPPSHALDLI--RDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTALVTLQK  228 (401)
Q Consensus       155 l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~l~~~~~  228 (401)
                      +|||+||..||.+......  ...............+.+..+++++.+++..||..+|++||+.+.+.+.|..+..
T Consensus       203 l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~  278 (293)
T d1csna_         203 FMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  278 (293)
T ss_dssp             HHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence            9999999999864311100  0000000000000111234466789999999999999999999998888877654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-38  Score=289.60  Aligned_cols=202  Identities=15%  Similarity=0.172  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHhhhCC-CeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 015733           17 STYFIVSLVLIASMSS-FILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERA   90 (401)
Q Consensus        17 ~~~f~~E~~~l~~~~h-~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~i   90 (401)
                      .+.|.+|+.++++++| |||+.++..+.     ..||||+.|+.+..+....+.+++..+..++.||+.||.|||++ ||
T Consensus        72 ~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~-~i  150 (322)
T d1vzoa_          72 TEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL-GI  150 (322)
T ss_dssp             GGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcC-CE
Confidence            4678999999999988 79998885444     33999999765555555566788999999999999999999999 99


Q ss_pred             eeccCCCCCEEECCCCCeEEecccCccccCCC-----CccccccccCCccccccC--ccCCCCcchhhHHHHHHHHhCCC
Q 015733           91 LYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-----RSYSTNLAFTPPEYLRTG--RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        91 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~--~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      +||||||+|||++.++.+||+|||+++.....     .+..|++.|++||.+.+.  .++.++|||||||+||||+||..
T Consensus       151 vHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~  230 (322)
T d1vzoa_         151 IYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGAS  230 (322)
T ss_dssp             CCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSC
T ss_pred             EeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999865432     245689999999999764  47889999999999999999999


Q ss_pred             CCCchhhHHhhhccccccccccccCCCChHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 015733          164 IPPSHALDLIRDRNIQTLTDSCLEGQFSSDEGTELVRLASRCLQYEPRERPN-----PRSLVT  221 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~~~vl~  221 (401)
                      ||.................  .....+|..++.++.+|+.+||++||.+|||     ++|+++
T Consensus       231 PF~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         231 PFTVDGEKNSQAEISRRIL--KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             TTSCTTSCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHhcc--cCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            9865422111111111111  1123456778999999999999999999995     788876

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=279.85  Aligned_cols=207  Identities=13%  Similarity=0.175  Sum_probs=162.7

Q ss_pred             hhhHHHHHHHHHHhhhCCCeEEEeeeecc-----ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 015733           15 LQSTYFIVSLVLIASMSSFILLAVIFMFQ-----IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKER   89 (401)
Q Consensus        15 ~~~~~f~~E~~~l~~~~h~niv~~~~~~~-----~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~   89 (401)
                      .....+.+|+.+++.++||||+.++..+.     ..|+||+.|+++..+....+.+++..+..++.|++.||+|||++ |
T Consensus        43 ~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~-~  121 (292)
T d1unla_          43 GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR-N  121 (292)
T ss_dssp             THHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcC-C
Confidence            34578999999999999999999884444     33899999887777766778899999999999999999999999 9


Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccccCCCC----ccccccccCCccccccCc-cCCCCcchhhHHHHHHHHhCCCC
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGR----SYSTNLAFTPPEYLRTGR-VTPESVMYSFGTLLLDLLSGKHI  164 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~~l~el~tg~~p  164 (401)
                      |+||||||+|||++.++.+||+|||.++......    ...+++.|+|||.+.... ++.++||||+||++|||++|+.|
T Consensus       122 IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p  201 (292)
T d1unla_         122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP  201 (292)
T ss_dssp             EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred             EeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCC
Confidence            9999999999999999999999999998755432    335678899999988654 68999999999999999999998


Q ss_pred             CCchhhHH--hhh-----c-----c---cccc---------ccccccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 015733          165 PPSHALDL--IRD-----R-----N---IQTL---------TDSCLEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLV  220 (401)
Q Consensus       165 ~~~~~~~~--~~~-----~-----~---~~~~---------~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl  220 (401)
                      |.......  ...     .     .   ....         .........+...++.+.+|+.+||+.||.+|||++|++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L  281 (292)
T d1unla_         202 LFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL  281 (292)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred             CCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            74321100  000     0     0   0000         000011123445678899999999999999999999998


Q ss_pred             HH
Q 015733          221 TA  222 (401)
Q Consensus       221 ~~  222 (401)
                      ++
T Consensus       282 ~H  283 (292)
T d1unla_         282 QH  283 (292)
T ss_dssp             TS
T ss_pred             cC
Confidence            64

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=286.06  Aligned_cols=203  Identities=14%  Similarity=0.188  Sum_probs=154.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc-----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ-----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYC   84 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~-----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l   84 (401)
                      ....+.+|+.++++++||||+.++..+.           ..|||||.++++..+.   ..+++..++.++.||+.||.||
T Consensus        59 ~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~---~~~~~~~i~~~~~qil~gl~~L  135 (355)
T d2b1pa1          59 HAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLYQMLCGIKHL  135 (355)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh---cCCCHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999885442           3499999988777664   4589999999999999999999


Q ss_pred             hcCCCceeccCCCCCEEECCCCCeEEecccCccccCCC---CccccccccCCccccccCccCCCCcchhhHHHHHHHHhC
Q 015733           85 TSKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG---RSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSG  161 (401)
Q Consensus        85 H~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  161 (401)
                      |++ ||+||||||+|||++.++.+|++|||+++.....   ....+|+.|+|||++.+..+++++||||+||++|+|++|
T Consensus       136 H~~-giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g  214 (355)
T d2b1pa1         136 HSA-GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH  214 (355)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             hhc-ccccccCCccccccccccceeeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhC
Confidence            999 9999999999999999999999999998875543   345689999999999998999999999999999999999


Q ss_pred             CCCCCchhhHHhhhccc---------------------------------ccccccccc---CCCChHHHHHHHHHHHHh
Q 015733          162 KHIPPSHALDLIRDRNI---------------------------------QTLTDSCLE---GQFSSDEGTELVRLASRC  205 (401)
Q Consensus       162 ~~p~~~~~~~~~~~~~~---------------------------------~~~~~~~~~---~~~~~~~~~~l~~li~~c  205 (401)
                      +.||.+...........                                 .........   ...+...+.++.+||.+|
T Consensus       215 ~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~m  294 (355)
T d2b1pa1         215 KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKM  294 (355)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence            99986432111100000                                 000000000   001234678899999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 015733          206 LQYEPRERPNPRSLVTA  222 (401)
Q Consensus       206 l~~~p~~Rps~~~vl~~  222 (401)
                      |..||++|||++|++++
T Consensus       295 L~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         295 LVIDPAKRISVDDALQH  311 (355)
T ss_dssp             SCSSTTTSCCHHHHHTS
T ss_pred             CcCChhHCcCHHHHhcC
Confidence            99999999999999874

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=281.61  Aligned_cols=205  Identities=15%  Similarity=0.181  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHHHhhhCCCeEEEeeeecc----------ccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 015733           16 QSTYFIVSLVLIASMSSFILLAVIFMFQ----------IPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCT   85 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h~niv~~~~~~~----------~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH   85 (401)
                      ..+.+.+|+.++++++|||+++++..+.          ..+++|+.|+.+..+.. .+.+++..+..++.||+.||.|||
T Consensus        60 ~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~-~~~l~e~~~~~i~~qil~aL~~LH  138 (348)
T d2gfsa1          60 HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK-CQKLTDDHVQFLIYQILRGLKYIH  138 (348)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcc-cccccHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999885442          23777777654444442 356999999999999999999999


Q ss_pred             cCCCceeccCCCCCEEECCCCCeEEecccCccccCCC-CccccccccCCccccccC-ccCCCCcchhhHHHHHHHHhCCC
Q 015733           86 SKERALYHDLNAYRIVFDDDVNPRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTG-RVTPESVMYSFGTLLLDLLSGKH  163 (401)
Q Consensus        86 ~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~~l~el~tg~~  163 (401)
                      ++ ||+||||||+|||++.++.+|++|||++...... .+..||+.|+|||.+.+. .++.++|||||||++|+|++|..
T Consensus       139 ~~-giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~  217 (348)
T d2gfsa1         139 SA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT  217 (348)
T ss_dssp             HT-TCCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             hC-CCcccccCCccccccccccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCC
Confidence            99 9999999999999999999999999998775443 456789999999987764 46899999999999999999999


Q ss_pred             CCCchhhHHhhhccccccc-------------------c---ccccC---CCChHHHHHHHHHHHHhcccCCCCCCCHHH
Q 015733          164 IPPSHALDLIRDRNIQTLT-------------------D---SCLEG---QFSSDEGTELVRLASRCLQYEPRERPNPRS  218 (401)
Q Consensus       164 p~~~~~~~~~~~~~~~~~~-------------------~---~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  218 (401)
                      ||.+...............                   .   .....   ......++++.+||.+||+.||.+|||+.|
T Consensus       218 pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e  297 (348)
T d2gfsa1         218 LFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQ  297 (348)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHH
Confidence            9865422111110000000                   0   00000   001235678999999999999999999999


Q ss_pred             HHHH
Q 015733          219 LVTA  222 (401)
Q Consensus       219 vl~~  222 (401)
                      ++++
T Consensus       298 lL~H  301 (348)
T d2gfsa1         298 ALAH  301 (348)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9874

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-31  Score=251.90  Aligned_cols=207  Identities=15%  Similarity=0.194  Sum_probs=151.1

Q ss_pred             hhHHHHHHHHHHhhhCC-----------CeEEEeeeecc-------ccEeeecCCc---ccccccCCCCCCCHHHHHHHH
Q 015733           16 QSTYFIVSLVLIASMSS-----------FILLAVIFMFQ-------IPSYEFHCLT---FSNNFSGETQPMKWAMRLRVA   74 (401)
Q Consensus        16 ~~~~f~~E~~~l~~~~h-----------~niv~~~~~~~-------~~v~Ey~~~~---l~~~~~~~~~~l~~~~~~~i~   74 (401)
                      ..+.+.+|+.+++.++|           +||++++..+.       ..+++++...   ...........+++..+..++
T Consensus        52 ~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  131 (362)
T d1q8ya_          52 YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQIS  131 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHH
Confidence            45678889999988875           56777763332       2256665532   222233456778999999999


Q ss_pred             HHHHHHHHHHhcCCCceeccCCCCCEEECCCCC------eEEecccCccccCCC-CccccccccCCccccccCccCCCCc
Q 015733           75 LHIAEALEYCTSKERALYHDLNAYRIVFDDDVN------PRLSCFGLMKNSRDG-RSYSTNLAFTPPEYLRTGRVTPESV  147 (401)
Q Consensus        75 ~qi~~~l~~lH~~~~ivH~dlk~~Nill~~~~~------~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~D  147 (401)
                      .||+.||.|||+..||+||||||+|||++.++.      ++++|||.+...... ....||+.|+|||++....++.++|
T Consensus       132 ~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  211 (362)
T d1q8ya_         132 KQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGAD  211 (362)
T ss_dssp             HHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             HHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhccccCCCcccc
Confidence            999999999998339999999999999986653      899999998865443 4567899999999999989999999


Q ss_pred             chhhHHHHHHHHhCCCCCCchhhHH----------------------hhhcc-ccccc---------cc----------c
Q 015733          148 MYSFGTLLLDLLSGKHIPPSHALDL----------------------IRDRN-IQTLT---------DS----------C  185 (401)
Q Consensus       148 v~slG~~l~el~tg~~p~~~~~~~~----------------------~~~~~-~~~~~---------~~----------~  185 (401)
                      |||+||++++|++|+.||.......                      ..... .....         ..          .
T Consensus       212 iwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (362)
T d1q8ya_         212 IWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT  291 (362)
T ss_dssp             HHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHH
T ss_pred             ccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcc
Confidence            9999999999999999985321100                      00000 00000         00          0


Q ss_pred             ccCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 015733          186 LEGQFSSDEGTELVRLASRCLQYEPRERPNPRSLVTA  222 (401)
Q Consensus       186 ~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~vl~~  222 (401)
                      ....++...++++.+|+.+||..||.+|||+.|++++
T Consensus       292 ~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~H  328 (362)
T d1q8ya_         292 EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  328 (362)
T ss_dssp             HTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             cccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            0123456678999999999999999999999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=146.49  Aligned_cols=104  Identities=23%  Similarity=0.332  Sum_probs=100.6

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+.+++.+|+.+++.|+|++|+..|+++|+.+|. ++.+|+++|.+|..+|++++|+.+++++++++|+++.+|+++|.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            4567899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+|++++|+..|++|++++|++.
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7.7e-20  Score=156.14  Aligned_cols=104  Identities=21%  Similarity=0.352  Sum_probs=100.4

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .+..++++|+.+++.|+|++|+..|++||+++|. ++.+|+++|.||.++|+|++|+.+|++|++++|+++.+|+++|.+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4677999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhhh
Q 015733          374 LFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |..+|+|++|+..|++|++++|...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999998643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=146.61  Aligned_cols=106  Identities=25%  Similarity=0.352  Sum_probs=102.4

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      .+.+..+..+|+.+++.|+|++|+..|+++|+++|+ +..+|+++|.+|..+|++++|+.+|++|++++|++..+|+++|
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g   85 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence            467888999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++..+|++++|+++|+++++++|.+.
T Consensus        86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          86 ASNMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=3.5e-18  Score=139.67  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=99.4

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---------------HHHHHhHHHHHHhCCChHHHHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---------------PTAFARRSLSYLMSDMPQEALNDASQ  355 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  355 (401)
                      ..+.+..++..|+.+|+.|+|.+|+..|++||+..+...               ..+|+|+|.||+++|+|++|+.+|++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            556788899999999999999999999999998765421               24789999999999999999999999


Q ss_pred             hHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          356 AQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       356 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ||+++|++.++|+++|.+|..+|++++|+.+|++|++++|.+.
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.3e-18  Score=140.68  Aligned_cols=108  Identities=13%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHhHHHHHHhCCChHHHHHHHHHh
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS--------------PTAFARRSLSYLMSDMPQEALNDASQA  356 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~a  356 (401)
                      +.+.+..++.+|+.+++.|+|++|+..|++||+..|...              ..+|.|+|.||+++|+|++|+.++++|
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            456788899999999999999999999999999877521              257899999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          357 QVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       357 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |+++|+++.+++++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999998654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=131.89  Aligned_cols=103  Identities=15%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChH-------
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHM-------  365 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------  365 (401)
                      +++..++++|+.+++.|+|++|+.+|+++|+++|+ +..+++++|.+|.++|+|++|+.++++|++++|++..       
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            46778899999999999999999999999999999 9999999999999999999999999999999998864       


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          366 AAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       366 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      +|+++|.++..++++++|++.|++++..++.
T Consensus        81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            7778888999999999999999999988753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.72  E-value=2.5e-17  Score=136.73  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=98.5

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC--------------CHHHHHhHHHHHHhCCChHHHHHHHHHh
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV--------------SPTAFARRSLSYLMSDMPQEALNDASQA  356 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  356 (401)
                      ..+.+..+.++|+.+++.|+|.+|+..|++||...+..              ...+|.|+|.||.++|+|.+|+.+++++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            45678889999999999999999999999999764431              1347899999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          357 QVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       357 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++++|++..+|+++|.+|..+|+|++|+++|++|++++|++.
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.69  E-value=7.2e-17  Score=124.38  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=93.3

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      ........|..+++.|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+.++++|++++|+++.+++.+|.+
T Consensus        15 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          15 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence            4455688999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHH
Q 015733          374 LFALGKENEAQAALREAS  391 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al  391 (401)
                      |..+|++++|++.|+++|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=4.8e-17  Score=135.13  Aligned_cols=106  Identities=19%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc----------------CCCCCHHHHHhHHHHHHhCCChHHHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDV----------------GTMVSPTAFARRSLSYLMSDMPQEALNDASQ  355 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  355 (401)
                      ...+..+...|+.++..|+|++|++.|++||++                +|. ...+|.|+|.||.++|+|++|+.+|++
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChh-hHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            344666788999999999999999999999864                455 677899999999999999999999999


Q ss_pred             hHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          356 AQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       356 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ||+++|+++.+|+++|.+|..+|+|++|+++|++|++++|++.
T Consensus       103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999998754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=1.8e-17  Score=140.60  Aligned_cols=129  Identities=10%  Similarity=-0.021  Sum_probs=94.7

Q ss_pred             hhhhhHHHHHHHHHHhhhCCCeEEEeee-eccccEeeecCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCce
Q 015733           13 IRLQSTYFIVSLVLIASMSSFILLAVIF-MFQIPSYEFHCLTFSNNFSGETQPMKWAMRLRVALHIAEALEYCTSKERAL   91 (401)
Q Consensus        13 ~~~~~~~f~~E~~~l~~~~h~niv~~~~-~~~~~v~Ey~~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~iv   91 (401)
                      .++....+..|+..+.++.|++++..+. ....++|||+++.....       ++......++.|++.||.|||++ ||+
T Consensus        54 ~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~~~~lvme~~~~~~~~~-------l~~~~~~~i~~ql~~~l~~lH~~-gii  125 (191)
T d1zara2          54 SVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYR-------VRVENPDEVLDMILEEVAKFYHR-GIV  125 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEECCCCEEGGG-------CCCSCHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             HHHHHHHHHHHHHHHHHccCCCcceEEEecCCEEEEEeeccccccc-------hhhHHHHHHHHHHHHHHHHHhhC-CEE
Confidence            3445566778999999999999887763 33457999999764433       33344668999999999999999 999


Q ss_pred             eccCCCCCEEECCCCCeEEecccCccccCCCCccccccccCC------ccccccCccCCCCcchhhHHHH
Q 015733           92 YHDLNAYRIVFDDDVNPRLSCFGLMKNSRDGRSYSTNLAFTP------PEYLRTGRVTPESVMYSFGTLL  155 (401)
Q Consensus        92 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~a------PE~~~~~~~~~~~Dv~slG~~l  155 (401)
                      ||||||+|||++++ .++|+|||+++........    .|..      .+.+ ...|+.++|+||..--+
T Consensus       126 HrDiKP~NILv~~~-~~~liDFG~a~~~~~~~~~----~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         126 HGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEGWR----EILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             CSCCSTTSEEEETT-EEEECCCTTCEETTSTTHH----HHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             EccCChhheeeeCC-CEEEEECCCcccCCCCCcH----HHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence            99999999999965 4899999998776533221    1111      1111 25688999999976443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3e-16  Score=138.79  Aligned_cols=106  Identities=12%  Similarity=0.062  Sum_probs=101.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      ...+..+..+|..+++.|+|++|++.|++||+++|+ ++.+|+++|.+|..+|++++|+.+|++|++++|+++.+++++|
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            456778899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|..+|++++|++.|+++++++|.+.
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            999999999999999999999998653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.8e-16  Score=130.39  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=92.3

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAA  372 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  372 (401)
                      .++..++++|..++..|+|++|++.|+++   .+. ++.+|+|+|.+|..+|+|++|+++|++||+++|+++.+|+++|.
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV---QDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            35667889999999999999999999863   555 78899999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHccchh
Q 015733          373 ALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       373 ~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ++..+|+|++|+++|++|++..+.
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHhhccHHHHHHHHHHHHHhCcc
Confidence            999999999999999999987654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.9e-16  Score=119.48  Aligned_cols=98  Identities=9%  Similarity=-0.014  Sum_probs=89.5

Q ss_pred             HhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC---CChHHHHHHHHHhHhhCCCC--hHHHHHHHHHH
Q 015733          300 KKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS---DMPQEALNDASQAQVISPVW--HMAAYLQAAAL  374 (401)
Q Consensus       300 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~  374 (401)
                      ..++.+...+++++|.+.|.++++++|+ ++.+++|+|.++.+.   +++++|+..++++++.+|+.  ..+++++|.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4567888999999999999999999999 999999999999874   56667999999999999866  45999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhhh
Q 015733          375 FALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+|+|++|+++|+++|+++|.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            999999999999999999999865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.58  E-value=2.2e-15  Score=123.12  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=92.3

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC-----------HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCC
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS-----------PTAFARRSLSYLMSDMPQEALNDASQAQVISP  361 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  361 (401)
                      .++..++..|..+++.|+|++|+..|++||++.|...           +.+|+|+|.+|..+|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4455667779999999999999999999999887621           46899999999999999999999999998755


Q ss_pred             C-----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          362 V-----------WHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       362 ~-----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +           +..+++++|.+|..+|++++|++.|++|+++.++.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            3           45589999999999999999999999999998754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=122.13  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-----------
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-----------  363 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------  363 (401)
                      +..+++.|..++..|+|++|++.|++||+++|+ ++.+|+++|.+|.++|+|++|+.+|++|+...+.+           
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~  114 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  114 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhh
Confidence            456889999999999999999999999999999 99999999999999999999999999999876643           


Q ss_pred             -----hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 -----HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 -----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                           .++++++|.++..+|++++|++.|++|+++.+.
T Consensus       115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                 478999999999999999999999999998865

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=2.9e-15  Score=120.74  Aligned_cols=96  Identities=16%  Similarity=0.049  Sum_probs=86.1

Q ss_pred             HhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhC----------CChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          302 GDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMS----------DMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       302 g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +..+-+.+.|++|++.|++|++++|+ ++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            34456678899999999999999999 999999999999855          5558899999999999999999999999


Q ss_pred             HHHHHcCC-----------hHHHHHHHHHHHccchhhh
Q 015733          372 AALFALGK-----------ENEAQAALREASILENKKS  398 (401)
Q Consensus       372 ~~~~~~~~-----------~~~A~~~~~~al~l~~~~~  398 (401)
                      .+|..+|+           |++|++.|++|++++|.+.
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            99988764           7999999999999999753

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=130.33  Aligned_cols=103  Identities=16%  Similarity=0.191  Sum_probs=98.2

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+...|..+...|++++|+..|+++++.+|+ ++.+|+++|.+|..+|++++|++.|+++++++|+++.+|+.+|.+|
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            455778899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHccchhhh
Q 015733          375 FALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       375 ~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..+|++++|++.|++|++++|++.
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcCh
Confidence            999999999999999999998754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.3e-14  Score=127.97  Aligned_cols=116  Identities=7%  Similarity=-0.066  Sum_probs=105.0

Q ss_pred             hhhhhhccchhhhhhhhhHhHhHHhhcC-ChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhC
Q 015733          282 ELSFQMWTGQMQETLNSKKKGDVAFRHK-DFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVIS  360 (401)
Q Consensus       282 ~~~~~~~t~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  360 (401)
                      ..........++....|..+|..+...| ++++|++.|+++|+++|+ +..+|+++|.++..+|++++|+.++++|++++
T Consensus        64 ~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d  142 (315)
T d2h6fa1          64 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD  142 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh
Confidence            3344444557788889999999998876 599999999999999999 99999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          361 PVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       361 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |++..+|+.+|.++..+|++++|++.|++|+++||.+.
T Consensus       143 p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         143 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH
Confidence            99999999999999999999999999999999998753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.8e-14  Score=128.74  Aligned_cols=107  Identities=9%  Similarity=-0.073  Sum_probs=99.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCC-ChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSD-MPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      .+..+..+...|..+.+.+.+++|++.|++||+++|+ +..+|++||.++..+| ++++|+.+++++++++|++..+|+.
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3455666777789999999999999999999999999 9999999999999987 5999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +|.++..+|++++|++.|++|++++|++.
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~  146 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNY  146 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcch
Confidence            99999999999999999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=124.49  Aligned_cols=103  Identities=10%  Similarity=0.041  Sum_probs=98.2

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAA  373 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  373 (401)
                      .....+++|..+++.|+|++|+..|+++|+.+|+ ++.+|+++|.++..+|++++|+..+++|++++|++..+++.+|.+
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   96 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS   96 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccc
Confidence            4445678999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHccchhh
Q 015733          374 LFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       374 ~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      |..+|++++|++.|++++.++|..
T Consensus        97 ~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          97 FTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             ccccccccccccchhhHHHhccch
Confidence            999999999999999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=102.31  Aligned_cols=84  Identities=13%  Similarity=0.016  Sum_probs=75.6

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC------CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV------SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      +.++++.|..+++.|+|.+|+..|++|+++.|..      ...++.++|.++.++|++++|+..+++||+++|+++.+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678999999999999999999999999885541      3679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 015733          369 LQAAALFALG  378 (401)
Q Consensus       369 ~~g~~~~~~~  378 (401)
                      +++.+...++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9988776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-13  Score=124.54  Aligned_cols=99  Identities=14%  Similarity=0.017  Sum_probs=95.2

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHc
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFAL  377 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  377 (401)
                      +++.|..+++.|+|++|++.|+++++.+|+ +..+++.+|.+|..+|+|++|+..+++|++++|+++.+++.+|.+|..+
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence            467899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccchhh
Q 015733          378 GKENEAQAALREASILENKK  397 (401)
Q Consensus       378 ~~~~~A~~~~~~al~l~~~~  397 (401)
                      |++++|++.++++++.++..
T Consensus        81 g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC
T ss_pred             cccccccccccccccccccc
Confidence            99999999999999988754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.1e-13  Score=122.72  Aligned_cols=107  Identities=15%  Similarity=0.058  Sum_probs=100.5

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+.....+...|..+...|++++|++.|.+++...|. ...++..+|.++..+|++++|+..++++++++|+++.+++.+
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445667888999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          371 AAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       371 g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      |.+|..+|++++|++.|++|++++|++.
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=5.4e-12  Score=103.91  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=86.0

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      .+..+..+.++|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|++..++..+
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445667788999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHH
Q 015733          371 AAALFALGKENEAQ  384 (401)
Q Consensus       371 g~~~~~~~~~~~A~  384 (401)
                      +.++..++.+.++.
T Consensus       152 ~~~~~~l~~~~~~~  165 (169)
T d1ihga1         152 LKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888777764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.4e-12  Score=96.12  Aligned_cols=86  Identities=7%  Similarity=-0.048  Sum_probs=80.5

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ...+.....+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.++..+|++++|+.++++|++++|+++.++.
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          31 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            335667788999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 015733          369 LQAAALF  375 (401)
Q Consensus       369 ~~g~~~~  375 (401)
                      .++.+..
T Consensus       110 ~l~~l~~  116 (117)
T d1elwa_         110 GLQNMEA  116 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9988753

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=3.8e-11  Score=99.60  Aligned_cols=101  Identities=10%  Similarity=0.041  Sum_probs=91.8

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC---------------------HHHHHhHHHHHHhCCChHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS---------------------PTAFARRSLSYLMSDMPQEAL  350 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------------~~~~~~~a~~~~~~~~~~~A~  350 (401)
                      ......+...|..+...|++++|++.|++|+++.+...                     ..++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            44566788999999999999999999999999977521                     147899999999999999999


Q ss_pred             HHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 015733          351 NDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASI  392 (401)
Q Consensus       351 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  392 (401)
                      .+++++++++|.+..+|..++.+|..+|++.+|++.|+++.+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999844

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.1e-12  Score=111.49  Aligned_cols=92  Identities=17%  Similarity=0.085  Sum_probs=82.1

Q ss_pred             hcCChHHHHHHHHHHHhcCCC---CCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHH
Q 015733          307 RHKDFRASIECYTQFIDVGTM---VSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEA  383 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  383 (401)
                      ...+++.|+..+++++...+.   ..+.+|+++|.+|..+|+|++|+.+|++|++++|+++.+|+++|.+|..+|++++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            345677888899999875332   15679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccchhhh
Q 015733          384 QAALREASILENKKS  398 (401)
Q Consensus       384 ~~~~~~al~l~~~~~  398 (401)
                      ++.|++|++++|++.
T Consensus        91 ~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          91 YEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHCTTCT
T ss_pred             hhhhhHHHHHHhhhh
Confidence            999999999999754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.25  E-value=2.2e-11  Score=100.12  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=84.8

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      +..+.+.|..+++.|+|++|+..++++|+++|. +..+|+++|.+|..+|+|++|+.+|++|++++|++..++..++.+.
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            344667899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHH-HHHHHHHH
Q 015733          375 FALGKENE-AQAALREA  390 (401)
Q Consensus       375 ~~~~~~~~-A~~~~~~a  390 (401)
                      ..++.+.+ ..+.|.+.
T Consensus       143 ~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            88887765 34444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-11  Score=100.53  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             hhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          297 NSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       297 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      .+...|..+++.|+|++|+..++++|+++|. ++.+|+++|.+|..+|+|++|+.+|++|++++|+++.+...++.++..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999 999999999999999999999999999999999999999999999988


Q ss_pred             cCChHHHHH
Q 015733          377 LGKENEAQA  385 (401)
Q Consensus       377 ~~~~~~A~~  385 (401)
                      ++++.+...
T Consensus       143 ~~~~~~~e~  151 (170)
T d1p5qa1         143 IRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.4e-11  Score=97.87  Aligned_cols=100  Identities=13%  Similarity=0.014  Sum_probs=88.1

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAY  368 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  368 (401)
                      ...+.....+...|..++..|++++|+..|.++|+++|. +..+|.++|.++..+|+|++|+.+++++++++|+++.++.
T Consensus        38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~  116 (159)
T d1a17a_          38 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  116 (159)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            335667888999999999999999999999999999999 9999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH--cCChHHHHHHHHH
Q 015733          369 LQAAALFA--LGKENEAQAALRE  389 (401)
Q Consensus       369 ~~g~~~~~--~~~~~~A~~~~~~  389 (401)
                      .++.+...  .+.+++|+...+.
T Consensus       117 ~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_         117 KYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHH
Confidence            88877544  4457777665433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=3.3e-11  Score=97.36  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      .-+.+.|..+++.|+|++|++.|++||+++|. +..+|+++|.+|..+|+|++|+.++++|++++|++..+...++.+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34567999999999999999999999999999 99999999999999999999999999999999999999999998877


Q ss_pred             HcCC
Q 015733          376 ALGK  379 (401)
Q Consensus       376 ~~~~  379 (401)
                      .+++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6e-11  Score=87.51  Aligned_cols=70  Identities=9%  Similarity=-0.142  Sum_probs=63.9

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-------HMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      .++-.+++|.++++.|+|.+|+..+++|+++.|.+       ..+++++|.+++.+|++++|++.|++||+++|++.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            45667899999999999999999999999986654       67899999999999999999999999999999865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.3e-11  Score=92.22  Aligned_cols=69  Identities=16%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          330 PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       330 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +..+-++|.+++..|+|++|+.+|++||+++|+++.+++++|.+|..+|+|++|+++|++|++++|+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            456788999999999999999999999999999999999999999999999999999999999998754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.3e-10  Score=97.59  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             CHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          329 SPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++..+...|..+++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            4777889999999999999999999999999999999999999999999999999999999999999764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=1.6e-10  Score=87.89  Aligned_cols=68  Identities=21%  Similarity=0.012  Sum_probs=64.7

Q ss_pred             HHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          331 TAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       331 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ..++++|.++.+.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|.+.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=1.3e-10  Score=92.91  Aligned_cols=93  Identities=14%  Similarity=-0.034  Sum_probs=79.2

Q ss_pred             chhhhhhhhhHhHhHHhh----------cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCC-----------hHH
Q 015733          290 GQMQETLNSKKKGDVAFR----------HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM-----------PQE  348 (401)
Q Consensus       290 ~~~~~a~~~~~~g~~~~~----------~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~-----------~~~  348 (401)
                      ..+..+..+...|..+..          .+.+++|+..|++||+++|+ ++.+|+++|.+|..+|+           |++
T Consensus        26 ~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~  104 (145)
T d1zu2a1          26 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  104 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHH
Confidence            356777888888888874          45668999999999999999 99999999999988764           799


Q ss_pred             HHHHHHHhHhhCCCChHHHHHHHHHHHHcCChHHH
Q 015733          349 ALNDASQAQVISPVWHMAAYLQAAALFALGKENEA  383 (401)
Q Consensus       349 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  383 (401)
                      |++.|++|++++|++..++..++.+....+.+.++
T Consensus       105 A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         105 ATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887655555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.5e-10  Score=89.54  Aligned_cols=90  Identities=12%  Similarity=-0.003  Sum_probs=76.5

Q ss_pred             cchhhhhhhhhHhHhHHhhc---CChHHHHHHHHHHHhcCCCCC-HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCCh
Q 015733          289 TGQMQETLNSKKKGDVAFRH---KDFRASIECYTQFIDVGTMVS-PTAFARRSLSYLMSDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~---~~~~~A~~~~~~ai~~~p~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      ...+.....+++.|..+++.   +++++|+..|++++..+|.+. ..+++++|.+|..+|+|++|+++++++++++|++.
T Consensus        27 ~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          27 AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            33456677888999999864   466789999999999988622 45899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 015733          365 MAAYLQAAALFALG  378 (401)
Q Consensus       365 ~~~~~~g~~~~~~~  378 (401)
                      .|...++.+...++
T Consensus       107 ~A~~l~~~I~~~~~  120 (122)
T d1nzna_         107 QAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999998876543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.7e-10  Score=110.08  Aligned_cols=103  Identities=8%  Similarity=-0.080  Sum_probs=71.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHH
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQA  371 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  371 (401)
                      +.....+...|..+.+.|++++|+..|.+++..+|.   .++.++|.++..+|+|++|+.+|++|++++|++..+|+++|
T Consensus       117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ---HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             --------------------------CCHHHHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            455667788899999999999999999999988765   57889999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHccchhh
Q 015733          372 AALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       372 ~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .++...|++.+|+.+|.+|+.+++..
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999998753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.7e-09  Score=96.67  Aligned_cols=103  Identities=9%  Similarity=-0.021  Sum_probs=88.9

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcC-----CCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC-----
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVG-----TMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVW-----  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  363 (401)
                      .+..+.+.|+.+...|+|++|++.|.+|+++.     +...+.+|.++|.||.++|++++|+..+++++++.++.     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            35567788899999999999999999999873     21145689999999999999999999999999987766     


Q ss_pred             -hHHHHHHHHHHHH-cCChHHHHHHHHHHHccchh
Q 015733          364 -HMAAYLQAAALFA-LGKENEAQAALREASILENK  396 (401)
Q Consensus       364 -~~~~~~~g~~~~~-~~~~~~A~~~~~~al~l~~~  396 (401)
                       ..++..+|.+|.. +|++++|++.|++|+++.+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence             6789999998865 79999999999999998654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=4.5e-09  Score=95.57  Aligned_cols=104  Identities=12%  Similarity=0.022  Sum_probs=68.8

Q ss_pred             hhhhhhhHhHhHHhhcC--ChHHHHHHHHHHHhcCCCCCHHHH-HhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH
Q 015733          293 QETLNSKKKGDVAFRHK--DFRASIECYTQFIDVGTMVSPTAF-ARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL  369 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  369 (401)
                      +....+..+|..+...+  ++++|+..+.++++.+|. +..++ ..+|.++...+.+++|+..++++++++|++..+|+.
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~  183 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34445555555554443  466777777777777776 55553 456666677777777777777777777777777777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          370 QAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       370 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                      +|.++..+|++++|+..+++++++.|..
T Consensus       184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~  211 (334)
T d1dcea1         184 RSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (334)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhHHHH
Confidence            7777777777777777777766666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=8.3e-09  Score=92.02  Aligned_cols=106  Identities=8%  Similarity=-0.199  Sum_probs=90.3

Q ss_pred             hhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC-----CHHHHHhHHHHHHh-CCChHHHHHHHHHhHhhCCC---
Q 015733          292 MQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV-----SPTAFARRSLSYLM-SDMPQEALNDASQAQVISPV---  362 (401)
Q Consensus       292 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~---  362 (401)
                      ...+..+.+.|..+.+.|++++|++.|++++++.+..     ...++.++|.+|.. +|++++|+..+++|+++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3456778899999999999999999999999886551     15689999998865 79999999999999987443   


Q ss_pred             ---ChHHHHHHHHHHHHcCChHHHHHHHHHHHccchhh
Q 015733          363 ---WHMAAYLQAAALFALGKENEAQAALREASILENKK  397 (401)
Q Consensus       363 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  397 (401)
                         ...++.++|.++..+|+|++|++.|+++++..+..
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence               35679999999999999999999999999987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.75  E-value=8e-09  Score=90.64  Aligned_cols=95  Identities=8%  Similarity=-0.018  Sum_probs=78.9

Q ss_pred             hHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHH-----------
Q 015733          301 KGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYL-----------  369 (401)
Q Consensus       301 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----------  369 (401)
                      ++..+++.|++++|++.|+++|+.+|+ +..++.++|.+|...|++++|++.++++++++|++..++..           
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            356788999999999999999999999 99999999999999999999999999999998887665444           


Q ss_pred             ------------------------HHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          370 ------------------------QAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       370 ------------------------~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                                              .+.++...|++++|++.++++.++.|.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                                    455566667777777777777766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=3.1e-08  Score=89.82  Aligned_cols=107  Identities=10%  Similarity=-0.105  Sum_probs=84.9

Q ss_pred             hhhhhhhhhHhHhHHhhc----------CChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCC--hHHHHHHHHHhHh
Q 015733          291 QMQETLNSKKKGDVAFRH----------KDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDM--PQEALNDASQAQV  358 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~----------~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~  358 (401)
                      .+.....|..++..+...          |++++|+..|+++++.+|+ +..+|+++|.++..+++  +++|+..++++++
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            444555666666555433          3378899999999999999 88899999888877754  7899999999999


Q ss_pred             hCCCChHHH-HHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          359 ISPVWHMAA-YLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       359 ~~p~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      ++|++..++ +..|.++...+++++|+..++++++++|.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence            999888875 5677888888999999999999999888654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=4.9e-08  Score=87.75  Aligned_cols=103  Identities=14%  Similarity=-0.038  Sum_probs=89.5

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCC----HHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCC------
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVS----PTAFARRSLSYLMSDMPQEALNDASQAQVISPVW------  363 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  363 (401)
                      .++...-+|..++..|++++|++.|+++++..|+.+    ..++..+|.+|..+|++++|+..+++++++.+..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            344555678999999999999999999999999833    3588999999999999999999999999876543      


Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          364 HMAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       364 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      ..+++.+|.++...|++..|+..+.+++++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            467889999999999999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.9e-08  Score=92.31  Aligned_cols=84  Identities=8%  Similarity=-0.039  Sum_probs=79.0

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      ...+...|..+...|+|++|+.+|.+|++++|+ +..+|+++|.++...|++.+|+.+|.+|+.++|.++.|+.+++.++
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            456788999999999999999999999999999 9999999999999999999999999999999999999999999998


Q ss_pred             HHcCC
Q 015733          375 FALGK  379 (401)
Q Consensus       375 ~~~~~  379 (401)
                      ....+
T Consensus       231 ~~~~~  235 (497)
T d1ya0a1         231 SKALE  235 (497)
T ss_dssp             HHHTT
T ss_pred             HHhhh
Confidence            76543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.52  E-value=1e-07  Score=76.42  Aligned_cols=68  Identities=22%  Similarity=0.106  Sum_probs=59.3

Q ss_pred             HHHHHhH--HHHHHhCCChHHHHHHHHHhHhhCCCCh------------HHHHHHHHHHHHcCChHHHHHHHHHHHccch
Q 015733          330 PTAFARR--SLSYLMSDMPQEALNDASQAQVISPVWH------------MAAYLQAAALFALGKENEAQAALREASILEN  395 (401)
Q Consensus       330 ~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  395 (401)
                      +.+|.++  |..++..|+|++|+..|++||++.|+.+            .+|.++|.+|..+|+|++|++.+++++++.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455555  7788899999999999999999988754            5799999999999999999999999999887


Q ss_pred             hh
Q 015733          396 KK  397 (401)
Q Consensus       396 ~~  397 (401)
                      +.
T Consensus        87 ~~   88 (156)
T d2hr2a1          87 RR   88 (156)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.4e-07  Score=84.57  Aligned_cols=103  Identities=12%  Similarity=-0.013  Sum_probs=89.8

Q ss_pred             hhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCC---CHHHHHhHHHHHHhCCChHHHHHHHHHhHh------hCCCCh
Q 015733          294 ETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMV---SPTAFARRSLSYLMSDMPQEALNDASQAQV------ISPVWH  364 (401)
Q Consensus       294 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~  364 (401)
                      ....+...|..+...|++++|...+.++++..+..   ....+.++|.++..+|++++|+..+++++.      ..|+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  291 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN  291 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH
Confidence            44456777888999999999999999999987762   245788899999999999999999999984      456778


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHccchh
Q 015733          365 MAAYLQAAALFALGKENEAQAALREASILENK  396 (401)
Q Consensus       365 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  396 (401)
                      .++..+|.+|..+|++++|++.|++|+++.+.
T Consensus       292 ~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         292 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            89999999999999999999999999998754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=4.4e-07  Score=68.38  Aligned_cols=79  Identities=6%  Similarity=-0.145  Sum_probs=63.9

Q ss_pred             hhHhHhHHhh---cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHH
Q 015733          298 SKKKGDVAFR---HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAAL  374 (401)
Q Consensus       298 ~~~~g~~~~~---~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  374 (401)
                      .|+-|-.+.+   ..+.+.||..+++++..+|....+.++++|.+|+++|+|++|.+.++++|+++|++..|...+-.+.
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            3444444443   3456799999999999998723589999999999999999999999999999999999988776665


Q ss_pred             HH
Q 015733          375 FA  376 (401)
Q Consensus       375 ~~  376 (401)
                      ..
T Consensus       118 ~~  119 (124)
T d2pqrb1         118 DK  119 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=5.9e-07  Score=67.68  Aligned_cols=73  Identities=8%  Similarity=0.008  Sum_probs=63.9

Q ss_pred             CCCCHHHHHhHHHHHHhC---CChHHHHHHHHHhHhhCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHccchhhh
Q 015733          326 TMVSPTAFARRSLSYLMS---DMPQEALNDASQAQVISPVWH-MAAYLQAAALFALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       326 p~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                      +.+.....++.|.++.+.   ++.++||..++++++.+|.+. +++|.+|.+|+.+|+|++|++.++++|+++|.+.
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            433577888889888865   556799999999999999775 8999999999999999999999999999999765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=2.9e-06  Score=75.61  Aligned_cols=98  Identities=8%  Similarity=-0.058  Sum_probs=84.0

Q ss_pred             hhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHH-HhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH
Q 015733          298 SKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSY-LMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA  376 (401)
Q Consensus       298 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  376 (401)
                      +...+....+.|+++.|.+.|.+|++..|. ....|...|... ...|+.+.|...++++++..|+++..+...+..+..
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            566677777888999999999999999998 888888888764 456899999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHccchh
Q 015733          377 LGKENEAQAALREASILENK  396 (401)
Q Consensus       377 ~~~~~~A~~~~~~al~l~~~  396 (401)
                      .|+++.|...|++|++..|.
T Consensus       216 ~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         216 LNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSS
T ss_pred             cCChHHHHHHHHHHHHhCCC
Confidence            99999999999999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.20  E-value=3.3e-07  Score=80.06  Aligned_cols=78  Identities=12%  Similarity=-0.092  Sum_probs=64.0

Q ss_pred             cchhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHH-----------------------------------HH
Q 015733          289 TGQMQETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPT-----------------------------------AF  333 (401)
Q Consensus       289 t~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~-----------------------------------~~  333 (401)
                      ...+.++......|..+...|++++|++.|+++++++|+ ...                                   .+
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~  102 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS  102 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHH
Confidence            446678888999999999999999999999999998887 433                                   35


Q ss_pred             HhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHH
Q 015733          334 ARRSLSYLMSDMPQEALNDASQAQVISPVWHMAA  367 (401)
Q Consensus       334 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  367 (401)
                      ..++.++...|++++|++.++++.++.|+.+..+
T Consensus       103 l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1         103 LVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            5566677778888889988888888888876544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=1.6e-05  Score=68.72  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCChHHHHHH
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWHMAAYLQ  370 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~  370 (401)
                      +..+...|..+++.+||++|+++|++|.+.  . +..+++++|.+|..    ..++..|...++++...  +++.+.+.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--K-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            567889999999999999999999999876  4 67899999999998    78999999999987754  588999999


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHccchh
Q 015733          371 AAALFA----LGKENEAQAALREASILENK  396 (401)
Q Consensus       371 g~~~~~----~~~~~~A~~~~~~al~l~~~  396 (401)
                      |..+..    .++.+.|...|+++.+.+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            998876    57899999999999877643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1e-05  Score=71.97  Aligned_cols=103  Identities=7%  Similarity=-0.066  Sum_probs=90.7

Q ss_pred             hhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHH
Q 015733          296 LNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALF  375 (401)
Q Consensus       296 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  375 (401)
                      .-+...+......|+++.|...|+++++..|.....+|...+......|++++|.+.+++|++..|.....+...|....
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~  179 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34566677788999999999999999999998345589999999999999999999999999999999999999998755


Q ss_pred             -HcCChHHHHHHHHHHHccchhhh
Q 015733          376 -ALGKENEAQAALREASILENKKS  398 (401)
Q Consensus       376 -~~~~~~~A~~~~~~al~l~~~~~  398 (401)
                       ..|+.+.|...|+++++..|.+.
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HhccCHHHHHHHHHHHHHhhhhhH
Confidence             46899999999999999987653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=1e-05  Score=65.91  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             hhhhhhhHhHhHHhhcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhH
Q 015733          293 QETLNSKKKGDVAFRHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQ  357 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  357 (401)
                      .....+...|..+...|+|++|+..++++++.+|. +..+|.+++.+|..+|++.+|++.|+++.
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34566788899999999999999999999999999 99999999999999999999999999983

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=4.8e-05  Score=58.45  Aligned_cols=85  Identities=12%  Similarity=0.021  Sum_probs=74.3

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH----cC
Q 015733          307 RHKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWHMAAYLQAAALFA----LG  378 (401)
Q Consensus       307 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~  378 (401)
                      ...++++|+..|.++.+.  . ++.+.+++|..|..    ..++++|++.+++|.+.  .++.+.+++|.+|..    ..
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--N-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred             cccCHHHHHHHHhhhhcc--c-chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCC
Confidence            446889999999999986  4 67899999999986    57899999999999875  689999999999987    57


Q ss_pred             ChHHHHHHHHHHHccchh
Q 015733          379 KENEAQAALREASILENK  396 (401)
Q Consensus       379 ~~~~A~~~~~~al~l~~~  396 (401)
                      ++++|++.|++|.++...
T Consensus       110 d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCH
Confidence            999999999999987644

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=0.00014  Score=62.43  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             hhhhhhhHhHhHHhh----cCChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHh----CCChHHHHHHHHHhHhhCCCCh
Q 015733          293 QETLNSKKKGDVAFR----HKDFRASIECYTQFIDVGTMVSPTAFARRSLSYLM----SDMPQEALNDASQAQVISPVWH  364 (401)
Q Consensus       293 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~  364 (401)
                      .....+...|..+..    ..+...+...++++.+.  . ++.+.+++|.+|..    ..++++|+..|++|.+.  +++
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g-~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~  214 (265)
T d1ouva_         140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--K-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENG  214 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             cccchhhhhhhhhccCCCcccccccchhhhhccccc--c-ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCH
Confidence            344556667777764    56788899999998864  4 67899999999987    68999999999999887  579


Q ss_pred             HHHHHHHHHHHH----cCChHHHHHHHHHHHccchhh
Q 015733          365 MAAYLQAAALFA----LGKENEAQAALREASILENKK  397 (401)
Q Consensus       365 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~  397 (401)
                      .+++++|.+|..    .+++++|+++|++|.+++...
T Consensus       215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            999999999986    458999999999999887543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=0.00016  Score=55.44  Aligned_cols=80  Identities=13%  Similarity=-0.002  Sum_probs=66.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHhCCChHHHHHHHHHhHhhCCCChHHHHHHHHHHHH----cCChHHHH
Q 015733          309 KDFRASIECYTQFIDVGTMVSPTAFARRSLSYLMSDMPQEALNDASQAQVISPVWHMAAYLQAAALFA----LGKENEAQ  384 (401)
Q Consensus       309 ~~~~~A~~~~~~ai~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~  384 (401)
                      +|+++|+++|.+|.+..-   +.+.++++.  ....++++|+..+++|.+.  +++.+.+.+|..|..    ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            588999999999998853   345556553  4568999999999999875  789999999999987    56899999


Q ss_pred             HHHHHHHccch
Q 015733          385 AALREASILEN  395 (401)
Q Consensus       385 ~~~~~al~l~~  395 (401)
                      +.|++|.+.+.
T Consensus        80 ~~~~~aa~~g~   90 (133)
T d1klxa_          80 QYYSKACGLND   90 (133)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHhhhhccCc
Confidence            99999998764

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.69  E-value=0.0088  Score=50.61  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCcc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMK  117 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~  117 (401)
                      ++|+|+.|.|||+++++.+-|.||+.+.
T Consensus       185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         185 FSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEeeccCcceeecCCceEEEeechhcc
Confidence            5899999999999987666799998754

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.41  E-value=0.0092  Score=52.20  Aligned_cols=30  Identities=20%  Similarity=0.089  Sum_probs=26.4

Q ss_pred             CCceeccCCCCCEEECCCCCeEEecccCcc
Q 015733           88 ERALYHDLNAYRIVFDDDVNPRLSCFGLMK  117 (401)
Q Consensus        88 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~  117 (401)
                      .|+||+|+.+.||+++.+...-|.||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            379999999999999988777899998763

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.25  E-value=0.034  Score=50.16  Aligned_cols=28  Identities=11%  Similarity=0.010  Sum_probs=23.9

Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCcc
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMK  117 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~  117 (401)
                      .++|+|++|.|||++.++ ++|+||..+.
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~  251 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAF  251 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCE
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhcc
Confidence            589999999999998764 8999997653

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=90.47  E-value=0.037  Score=46.24  Aligned_cols=29  Identities=10%  Similarity=-0.020  Sum_probs=24.6

Q ss_pred             ceeccCCCCCEEECCCCCeEEecccCccc
Q 015733           90 ALYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        90 ivH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      ++|+|+.|.|||++.+..+-|+||+.+..
T Consensus       177 liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             EEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            69999999999999876678999986533

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.18  Score=43.88  Aligned_cols=28  Identities=25%  Similarity=0.266  Sum_probs=23.0

Q ss_pred             CceeccCCCCCEEECCCCCeEEecccCccc
Q 015733           89 RALYHDLNAYRIVFDDDVNPRLSCFGLMKN  118 (401)
Q Consensus        89 ~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~  118 (401)
                      ++||+|+++.|||++++  ..++||+-+..
T Consensus       193 ~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         193 LRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             EECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             eeecCCCCcccEEEeCC--ceEEechhccc
Confidence            68999999999999753  45899987654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.53  E-value=0.23  Score=34.32  Aligned_cols=34  Identities=15%  Similarity=0.281  Sum_probs=28.8

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDV  324 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~  324 (401)
                      ....+..+..+|..+-+.|+|++|+.+|.+||+.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567888888999999999999999999998764

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.24  Score=32.93  Aligned_cols=34  Identities=9%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             hhhhhhhhhHhHhHHhhcCChHHHHHHHHHHHhc
Q 015733          291 QMQETLNSKKKGDVAFRHKDFRASIECYTQFIDV  324 (401)
Q Consensus       291 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~  324 (401)
                      ..+.+..+..+|...-+.|+|++|+.+|.+|++.
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566778888888888899999999888888764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.55  Score=30.97  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q 015733          367 AYLQAAALFALGKENEAQAALREAS  391 (401)
Q Consensus       367 ~~~~g~~~~~~~~~~~A~~~~~~al  391 (401)
                      +-++|..+...|+|++||+++++|.
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444555555554444443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.19  E-value=0.7  Score=30.45  Aligned_cols=29  Identities=10%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             hhhhhHhHhHHhhcCChHHHHHHHHHHHh
Q 015733          295 TLNSKKKGDVAFRHKDFRASIECYTQFID  323 (401)
Q Consensus       295 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~  323 (401)
                      +=.+-.+|..+.+.|+|++||+++.+|.+
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33445667778888888888888877754