BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015735
(401 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 160/436 (36%), Positives = 222/436 (50%), Gaps = 98/436 (22%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M LLDIQP L+F ++KKQ++CV+QL N + VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1 MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60
Query: 61 KAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVA 120
K+ +FT V MQA +
Sbjct: 61 KSTCEFT--------------------------------------------VIMQAFKEP 76
Query: 121 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 180
PPD+ CKDKFLIQ V T+DEDIT+ MF+K GK++EE KLRV L+ P SP L P
Sbjct: 77 PPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPELSPI 136
Query: 181 NGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------------AANAEVFETAK 223
N KQ + E S+ KDR S E + P G+ V A NA+ +T K
Sbjct: 137 NTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGHDELKAADNAKELKTPK 195
Query: 224 FA-----------DELTETKD------------LQWLENAKERDESRAAKDVQMFGTTNV 260
A ++L TKD + + K+ D+ RA K TTN+
Sbjct: 196 MATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDADDGRAIK-----ATTNL 250
Query: 261 TNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASELKPAKDILELKLAKDF 315
+++A D+ Q F + +D IS D D ++ + ELKL KD
Sbjct: 251 DAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQNVR---GLDELKLVKDI 307
Query: 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPL 375
EE+KLK++ ++S+L++A+ TI KLME R ++++ + L+HEL LR K ++ V GFPL
Sbjct: 308 EEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPL 367
Query: 376 LFVCMVALIGLVVGYL 391
L+VC+VA I V+G+
Sbjct: 368 LYVCVVAFIAYVIGHF 383
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 125/235 (53%), Gaps = 48/235 (20%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M+ ELL I P++L+F FE+KKQ +C + LGNK+D VAFKVKTT+PKKYCVRPN ++ P
Sbjct: 1 MSNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60
Query: 61 KAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVA 120
++ S+ VTMQAQ+ A
Sbjct: 61 RSSSEVL--------------------------------------------VTMQAQKEA 76
Query: 121 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 180
P DLQCKDKFL+Q +V G + +D+T +MF+K++G VEE KLRV+ ++PP+ P + R
Sbjct: 77 PADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPRPPSPV-R 135
Query: 181 NGELKQDSSPETSLQKDRALSGVENIP--PGDGVAANAEVFETAKFADELTETKD 233
G ++ SSP S+ + S P D V A E +LTE K+
Sbjct: 136 EGS-EEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEARALVTKLTEEKN 189
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 109/191 (57%), Gaps = 46/191 (24%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
ELL ++PL+L+F FE+KKQ +C + L NK+D VAFKVKTT+PKKYCVRPN ++ P++
Sbjct: 21 ELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRS- 79
Query: 64 SDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPD 123
C ++ VTMQAQ+ AP D
Sbjct: 80 ------------------------TCEVL-------------------VTMQAQKEAPSD 96
Query: 124 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGE 183
+QCKDKFL+QG++ G + +++T +MF+K++G VEE KLRV ++PP+ P + E
Sbjct: 97 MQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRPPSPVHEGSE 156
Query: 184 LKQDSSPETSL 194
+ SSP S+
Sbjct: 157 --EGSSPRASV 165
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 48/192 (25%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
+L++I P ELKF FE+KKQS+C +QL NK+ QCVAFKVKTT+P+KYCVRPN ++ P
Sbjct: 5 DLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLP-- 62
Query: 63 ISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPP 122
G +C N+ VTMQAQ+ AP
Sbjct: 63 -----GDSC--------------------------------NV-----TVTMQAQKEAPL 80
Query: 123 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG 182
D+QCKDKFL+Q +VV GT+ +++ ++MF K++G+ +E+ KLRV+ + P P +P
Sbjct: 81 DMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI-PANPPSPVPEGS 139
Query: 183 ELKQDSSPETSL 194
E + +SP SL
Sbjct: 140 E--EGNSPMASL 149
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 44/168 (26%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
+L+ IQP ELKF FE++KQS C +++ NK++ VAFKVKTTSPKKY VRPN +I+P
Sbjct: 8 QLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQP--- 64
Query: 64 SDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPD 123
C+ VT+QAQR PPD
Sbjct: 65 --------------------WDSCIIR---------------------VTLQAQREYPPD 83
Query: 124 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 171
+QCKDKFL+Q +VP T +++ D F KDSGK + E KL+V ++P
Sbjct: 84 MQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITP 131
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 293 PAEDASELKPAKDILELKLAKDFEELKLKLNVM----------------DSQLREAEHTI 336
P D EL +D K E KLK++ + D Q E TI
Sbjct: 99 PHTDVDEL--PQDTFTKDSGKTLTECKLKVSYITPSTTQRSSESGATNGDGQSSETISTI 156
Query: 337 RKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 391
++L E R A ++ L+HELE +RR+ N R G L MV LIGL++G++
Sbjct: 157 QRLKEERDAAVKQTQQLQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFI 211
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 46/197 (23%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M++ELL I P++++F E+ K+ +C + L NK++ VAFK KTT+ KKY VRPNV ++ P
Sbjct: 172 MSDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLP 231
Query: 61 KAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVA 120
++ C ++ V MQA + A
Sbjct: 232 RS-------------------------SCEVL-------------------VIMQALKEA 247
Query: 121 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 180
P D+QC+DK L Q VV T+ +D+TS+MF+K++G EE +L+V+ ++PPQ P P
Sbjct: 248 PADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQPPS--PV 305
Query: 181 NGELKQDSSPETSLQKD 197
++ SSP S+ +
Sbjct: 306 QEGTEEGSSPRASVSDN 322
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 51/213 (23%)
Query: 2 AEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
+ELL ++++F E+ KQ +C + L NK+D VAFK +TT PK YCV+P+V ++ P+
Sbjct: 3 TDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPR 62
Query: 62 AISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAP 121
+ C ++ V MQA + AP
Sbjct: 63 S-------------------------SCEVL-------------------VVMQALKEAP 78
Query: 122 PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP--PQSPVLLP 179
D QCKDK L Q VV GT D+++TS+MF+K++G VEE ++I ++P PQSPV
Sbjct: 79 ADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPPQPQSPV--- 135
Query: 180 RNGELKQDSSPETSLQKDRALSGVENIPPGDGV 212
+ G L+ SSP S+ D+ + + P G+
Sbjct: 136 QEG-LEDGSSPSASVS-DKGNASEVFVGPSVGI 166
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 44/166 (26%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
ELL+I+P+ L+F FE+KKQ +C + L NK+D VAFKVKTT+ YCVRPN +I PK+
Sbjct: 5 ELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKS- 63
Query: 64 SDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPD 123
C ++ VTMQAQ+ P D
Sbjct: 64 ------------------------TCKVL-------------------VTMQAQKEVPSD 80
Query: 124 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 169
+Q +KF+IQ ++ G + +++T +MF+K+SG VEE KLRV +
Sbjct: 81 MQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYV 126
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 48/170 (28%)
Query: 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISD 65
++I P L + + +QST + N SDQ +AFKVKTT+PK YCVRPN +++ P
Sbjct: 4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGE--- 60
Query: 66 FTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQ 125
+ + +G+ ++ D +
Sbjct: 61 ----------------------TIQVQVIFLGLTEEPAA------------------DFK 80
Query: 126 CKDKFLIQGIVVPF---GTSDEDITSDMFAKDSGKYVEEKKLRV-ILMSP 171
C+DKFL+ + P+ G + D+ SD+ A+ + + KK++V L+SP
Sbjct: 81 CRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAI-SKKIKVKYLISP 129
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 160/423 (37%), Gaps = 92/423 (21%)
Query: 12 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINC 71
EL F S +I + N + + V FKVKTT+PK YCVRPN I+PK+
Sbjct: 8 ELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKST-------- 59
Query: 72 VSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAP-PDLQCKDKF 130
N+ +L +QA + P PD +C+DKF
Sbjct: 60 -------------------------------VNVQVL-----LQAMKEEPAPDFKCRDKF 83
Query: 131 LIQGIVVPFGTSDEDITSDMFA-----KDSGKYVEEKKLRVILMS--PPQSPVLLPRNGE 183
LIQ + + G +D + + G+ + ++K+R + + PPQS + E
Sbjct: 84 LIQSMAI--GDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQS---ADKQVE 138
Query: 184 LKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENA-KE 242
S+P S++ L+ P GV+ + + D L+ + ++ +
Sbjct: 139 NTSTSNPPVSVEGSENLASSVGGPTAVGVSLDEAQNDFNGAKDHLSNGVNTVVPDSTFRS 198
Query: 243 RDESRAAKDVQMFGT--TNVTNKLREAKD-VQTFE--SSKDIDELISAAED----EQSRP 293
ES D + T T+ N KD + T E SSK D S +D E +P
Sbjct: 199 TFESAQIPDASVVQTVVTDADNGAASVKDTIVTAESASSKGADVARSKVQDIIDNEIPKP 258
Query: 294 AE------DASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 347
+E ++ + L+ EE K N DS+L E+ + K+ E T
Sbjct: 259 SESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSET 318
Query: 348 REK-DMLKHELEVLRRKSNLRRVQ------------------VGFPLLFVCMVALIGLVV 388
RE K + L +++ G P V ++ LI ++
Sbjct: 319 RESLQGAKPAAGAHSSDNALEQIKPSYSADPSSSTGASLTESPGIPPNIVIILCLIFFLI 378
Query: 389 GYL 391
GYL
Sbjct: 379 GYL 381
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B
OS=Rattus norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN +I
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVI 61
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C
OS=Homo sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +I
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSI 73
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
E+ L ++P EL+F T ++L N +D+ + FKVKTT+PK+YCVRPN I++PK
Sbjct: 5 EQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPK 64
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A
OS=Rattus norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN +I P +I
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSI 73
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
E++L ++P ELKF T ++LGN +D+ V FKVKTT P++YCVRPN +I
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVI 61
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCS22 PE=1 SV=2
Length = 175
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
+ I P +L F + KQST I+L N ++ V FKV+T++P KYCVRPNV+II
Sbjct: 1 MRIVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAII 53
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGS 72
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGS 72
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDP 70
>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsF PE=3 SV=1
Length = 210
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 233 DLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSR 292
D + ++ AK+ E + AKD + T +++EAKD + + +KD E+ A + ++ +
Sbjct: 121 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVK 180
Query: 293 PAEDASELKPAKDILELKLAKDFEELK 319
A+D E+K AKD E+K AKD +E+K
Sbjct: 181 EAKDTKEVKEAKDTKEVKEAKDTKEVK 207
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 239 NAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDAS 298
N + E + AKD + T +++EAKD + + +KD E+ A + ++ + A+D
Sbjct: 118 NENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTK 177
Query: 299 ELKPAKDILELKLAKDFEELK 319
E+K AKD E+K AKD +E+K
Sbjct: 178 EVKEAKDTKEVKEAKDTKEVK 198
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 250 KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILEL 309
K+ N T +++EAKD + + +KD E+ A + ++ + A+D E+K AKD E+
Sbjct: 111 KEASTTNNENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEV 170
Query: 310 KLAKDFEELK 319
K AKD +E+K
Sbjct: 171 KEAKDTKEVK 180
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 222 AKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDE 281
AK E+ E KD + ++ AK+ E + AKD + T +++EAKD + + +KD E
Sbjct: 128 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 187
Query: 282 LISAAEDEQSRPAEDASELKPAKDILELK 310
+ + A+D E+K AKD E+K
Sbjct: 188 V---------KEAKDTKEVKEAKDTKEVK 207
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 44/150 (29%)
Query: 25 CVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTL 84
C ++L N + + FKVKTT+PK+YCVRPN I+
Sbjct: 21 CDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIE------------------------- 55
Query: 85 LECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDE 144
N A+ E + P +C+DKFL+Q +
Sbjct: 56 ------------------ANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGM 97
Query: 145 DITSDMFAKDSGKYVEEKKLRVILMSPPQS 174
DI +D++ + S + E+K+R + P +
Sbjct: 98 DI-ADIWTQVSKANISERKIRCVYSEGPST 126
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 6 LDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
L + P E L F +E KQ I++ N S VAFK +TT+PK +RP +I+ P
Sbjct: 108 LKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP 163
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 5 LLDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
LL I P E L F + +I L N + VAFKV+TT+P+KY V+P+ S P A
Sbjct: 327 LLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 SD 65
D
Sbjct: 387 VD 388
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 5 LLDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
LL I P E L F + +I L N + VAFKV+TT+P+KY V+P+ S P A
Sbjct: 327 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 SD 65
D
Sbjct: 387 ID 388
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 12 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
+L F +E KQ I++ N S VAFK +TT PK +RP +I+ P
Sbjct: 107 KLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAP 155
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 13 LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
L F +E KQ I+L N S AFK +TT+PK +RP ++ P
Sbjct: 85 LYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAP 132
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 220 ETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQT--FESSK 277
++ K D+ E +D ++L +ER+E+R D Q N+ ++L +A + T FE+SK
Sbjct: 871 KSEKSLDKQAEERDKKYLLYFEEREEARPKAD-QYGSLINIVSRLLDASNRSTSSFETSK 929
Query: 278 DIDEL--ISAAEDEQSR 292
+++E I A EQSR
Sbjct: 930 NMEEYERIDAMAKEQSR 946
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 295 EDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 351
E+A E + K +LE K E++L LN +QL +TIR+L + L RE++
Sbjct: 515 EEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKRERE 571
>sp|Q9NQX4|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2
Length = 1742
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 298 SELKPAKDILELKLAKDFEELKLKLNVMDSQL---REAEHTIRKLMEAR-KLATREKDML 353
SEL+ K LE++L + E++K KL + +QL +E E T RK +EA+ ++ T+EK+ L
Sbjct: 1219 SELEKQKQDLEIRLNEQAEKMKGKLEELSNQLHRSQEEEGTQRKALEAQNEIHTKEKEKL 1278
Query: 354 KHELEVLRRKSN 365
+++ ++ S+
Sbjct: 1279 IDKIQEMQEASD 1290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,008,197
Number of Sequences: 539616
Number of extensions: 5932885
Number of successful extensions: 22085
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 452
Number of HSP's that attempted gapping in prelim test: 21328
Number of HSP's gapped (non-prelim): 1108
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)