Query 015735
Match_columns 401
No_of_seqs 206 out of 580
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 8.4E-28 1.8E-32 216.9 14.7 130 3-178 6-138 (218)
2 COG5066 SCS2 VAMP-associated p 99.9 9.4E-28 2E-32 225.0 12.2 121 6-172 3-124 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 6.5E-23 1.4E-27 164.7 12.9 105 6-155 2-108 (109)
4 PF14874 PapD-like: Flagellar- 98.1 4.4E-05 9.6E-10 61.5 10.6 66 4-69 2-70 (102)
5 PRK10884 SH3 domain-containing 96.5 0.0076 1.6E-07 56.9 7.0 72 321-392 119-191 (206)
6 PF00345 PapD_N: Pili and flag 94.0 0.56 1.2E-05 39.2 9.4 59 6-67 2-69 (122)
7 PF14197 Cep57_CLD_2: Centroso 89.0 1.9 4E-05 34.8 6.8 50 315-364 7-63 (69)
8 PRK04406 hypothetical protein; 87.2 3.1 6.6E-05 34.0 7.1 51 315-365 6-56 (75)
9 PRK10884 SH3 domain-containing 86.9 2.4 5.2E-05 40.3 7.3 69 320-392 125-195 (206)
10 PF04102 SlyX: SlyX; InterPro 85.8 3.5 7.6E-05 32.7 6.6 48 319-366 3-50 (69)
11 PRK04325 hypothetical protein; 84.2 4.2 9.2E-05 33.0 6.5 49 317-365 6-54 (74)
12 PRK10404 hypothetical protein; 83.0 7.2 0.00016 33.5 7.7 22 372-393 78-99 (101)
13 PF05957 DUF883: Bacterial pro 81.5 19 0.00042 29.5 9.5 22 373-394 72-93 (94)
14 PRK02119 hypothetical protein; 80.9 7.9 0.00017 31.4 6.9 49 317-365 6-54 (73)
15 PRK02793 phi X174 lysis protei 80.3 7.6 0.00016 31.4 6.6 49 318-366 6-54 (72)
16 PRK00846 hypothetical protein; 79.9 7.9 0.00017 32.2 6.7 48 317-364 10-57 (77)
17 PF14646 MYCBPAP: MYCBP-associ 79.4 10 0.00022 39.0 8.8 57 11-67 237-306 (426)
18 PRK00736 hypothetical protein; 79.4 8.2 0.00018 30.9 6.4 46 320-365 5-50 (68)
19 PRK00295 hypothetical protein; 79.3 8.3 0.00018 30.8 6.4 46 320-365 5-50 (68)
20 PRK10132 hypothetical protein; 76.3 33 0.00071 29.9 9.7 23 372-394 84-106 (108)
21 PF10779 XhlA: Haemolysin XhlA 75.9 32 0.00069 27.3 8.8 68 318-393 4-71 (71)
22 PF07798 DUF1640: Protein of u 75.7 24 0.00051 32.3 9.2 16 376-391 158-173 (177)
23 PF11614 FixG_C: IG-like fold 73.7 8.6 0.00019 32.2 5.4 46 22-67 32-79 (118)
24 PF06156 DUF972: Protein of un 73.4 14 0.00031 32.1 6.8 52 311-362 6-57 (107)
25 PRK09918 putative fimbrial cha 72.2 35 0.00075 32.6 9.7 59 6-67 26-89 (230)
26 COG3883 Uncharacterized protei 70.6 13 0.00029 37.1 6.8 70 296-365 28-97 (265)
27 PF06156 DUF972: Protein of un 68.2 34 0.00073 29.8 7.9 51 316-366 4-54 (107)
28 PF05064 Nsp1_C: Nsp1-like C-t 66.5 17 0.00036 31.5 5.8 64 300-363 23-86 (116)
29 PRK15249 fimbrial chaperone pr 66.0 45 0.00097 32.5 9.2 60 5-67 29-99 (253)
30 PRK09926 putative chaperone pr 65.8 49 0.0011 31.9 9.4 60 5-67 26-95 (246)
31 PF05546 She9_MDM33: She9 / Md 65.5 23 0.00049 34.5 6.9 53 313-365 32-85 (207)
32 PRK13169 DNA replication intia 64.9 27 0.00058 30.7 6.7 52 311-362 6-57 (110)
33 PRK13169 DNA replication intia 63.7 38 0.00083 29.8 7.5 51 316-366 4-54 (110)
34 KOG3156 Uncharacterized membra 62.4 16 0.00035 35.8 5.4 89 299-391 109-216 (220)
35 PF11166 DUF2951: Protein of u 61.9 47 0.001 29.1 7.5 21 373-393 69-89 (98)
36 PF10498 IFT57: Intra-flagella 61.1 30 0.00064 35.7 7.3 66 306-376 266-331 (359)
37 PF06005 DUF904: Protein of un 60.0 34 0.00074 27.9 6.1 41 323-363 7-54 (72)
38 PF06005 DUF904: Protein of un 59.7 48 0.001 27.1 6.9 45 313-364 18-62 (72)
39 PF03962 Mnd1: Mnd1 family; I 59.4 24 0.00052 33.0 5.8 57 308-365 71-127 (188)
40 PRK11385 putativi pili assembl 59.1 71 0.0015 31.0 9.1 59 6-67 28-98 (236)
41 PF07610 DUF1573: Protein of u 58.7 36 0.00079 24.7 5.5 41 27-68 2-43 (45)
42 PF13544 N_methyl_2: Type IV p 57.0 9.9 0.00021 26.2 2.2 22 366-387 9-30 (31)
43 PF12777 MT: Microtubule-bindi 56.4 35 0.00075 34.2 6.8 54 311-364 226-279 (344)
44 PF13870 DUF4201: Domain of un 56.1 88 0.0019 28.3 8.7 65 308-376 79-143 (177)
45 PF06548 Kinesin-related: Kine 55.9 35 0.00075 36.9 6.9 32 333-364 430-471 (488)
46 PF05506 DUF756: Domain of unk 55.0 23 0.0005 28.6 4.4 37 24-67 21-62 (89)
47 PF15188 CCDC-167: Coiled-coil 54.6 66 0.0014 27.4 7.1 25 340-364 42-66 (85)
48 PF10473 CENP-F_leu_zip: Leuci 53.0 80 0.0017 28.9 7.9 53 311-363 29-81 (140)
49 PF08317 Spc7: Spc7 kinetochor 52.9 64 0.0014 32.2 8.0 52 313-364 216-267 (325)
50 PF12325 TMF_TATA_bd: TATA ele 52.2 61 0.0013 28.8 6.9 50 314-363 31-83 (120)
51 PF09738 DUF2051: Double stran 51.0 32 0.0007 34.8 5.6 51 314-364 113-163 (302)
52 PF06280 DUF1034: Fn3-like dom 50.8 43 0.00094 27.8 5.5 25 20-44 7-31 (112)
53 PRK15299 fimbrial chaperone pr 50.4 1.4E+02 0.003 28.5 9.5 60 5-67 23-90 (227)
54 PF11559 ADIP: Afadin- and alp 50.0 72 0.0016 28.1 7.0 55 308-362 68-122 (151)
55 PF08826 DMPK_coil: DMPK coile 49.3 79 0.0017 25.3 6.4 33 323-362 28-60 (61)
56 PRK15246 fimbrial assembly cha 48.9 1.5E+02 0.0031 28.8 9.4 60 5-67 11-80 (233)
57 KOG0995 Centromere-associated 48.7 58 0.0013 36.0 7.4 63 309-375 269-331 (581)
58 PRK11637 AmiB activator; Provi 48.4 79 0.0017 32.4 8.0 32 327-358 96-127 (428)
59 PF13851 GAS: Growth-arrest sp 47.7 71 0.0015 30.2 7.0 46 314-359 28-80 (201)
60 smart00809 Alpha_adaptinC2 Ada 47.6 1.3E+02 0.0028 24.2 7.7 48 20-67 17-68 (104)
61 PRK15295 fimbrial assembly cha 47.2 1.7E+02 0.0036 28.1 9.5 60 5-67 20-86 (226)
62 PF10482 CtIP_N: Tumour-suppre 47.2 49 0.0011 29.9 5.5 38 320-357 82-119 (120)
63 PF11221 Med21: Subunit 21 of 46.3 90 0.002 27.9 7.1 55 309-363 79-133 (144)
64 PF08606 Prp19: Prp19/Pso4-lik 46.0 50 0.0011 27.3 5.0 38 316-353 32-69 (70)
65 PRK11637 AmiB activator; Provi 45.6 1.1E+02 0.0025 31.3 8.6 50 314-363 76-125 (428)
66 PLN03188 kinesin-12 family pro 45.4 54 0.0012 39.3 6.9 32 333-364 1200-1241(1320)
67 PRK15211 fimbrial chaperone pr 45.0 1.8E+02 0.0039 28.1 9.4 59 6-67 24-88 (229)
68 PF02753 PapD_C: Pili assembly 44.6 29 0.00063 26.4 3.3 41 27-67 1-42 (68)
69 PRK04778 septation ring format 44.2 1.5E+02 0.0033 31.8 9.6 88 308-396 378-465 (569)
70 PF13870 DUF4201: Domain of un 44.1 57 0.0012 29.5 5.6 42 314-355 92-133 (177)
71 COG4467 Regulator of replicati 44.0 88 0.0019 28.1 6.5 43 315-357 10-52 (114)
72 PRK15422 septal ring assembly 43.3 88 0.0019 26.5 6.1 46 315-360 20-65 (79)
73 PRK03992 proteasome-activating 42.6 66 0.0014 32.7 6.4 46 317-362 5-50 (389)
74 smart00340 HALZ homeobox assoc 42.3 45 0.00097 25.5 3.8 20 345-364 16-35 (44)
75 PF10205 KLRAQ: Predicted coil 42.3 1.2E+02 0.0027 26.6 7.1 42 319-360 25-73 (102)
76 PF05008 V-SNARE: Vesicle tran 42.0 68 0.0015 25.1 5.1 46 316-361 21-67 (79)
77 TIGR03185 DNA_S_dndD DNA sulfu 41.6 1E+02 0.0022 33.4 7.9 28 314-341 224-251 (650)
78 PF06160 EzrA: Septation ring 41.4 1.8E+02 0.004 31.4 9.7 89 307-396 373-461 (560)
79 PRK15290 lfpB fimbrial chapero 41.1 2.2E+02 0.0047 27.9 9.4 59 6-67 39-105 (243)
80 TIGR03007 pepcterm_ChnLen poly 41.0 2.9E+02 0.0063 28.5 10.8 25 336-360 357-381 (498)
81 PF09726 Macoilin: Transmembra 41.0 63 0.0014 36.2 6.4 57 308-364 420-476 (697)
82 PF11544 Spc42p: Spindle pole 40.8 1.6E+02 0.0034 24.9 7.2 51 313-363 5-55 (76)
83 PF04420 CHD5: CHD5-like prote 40.8 40 0.00086 30.7 4.1 52 308-368 42-93 (161)
84 KOG3119 Basic region leucine z 40.5 1.2E+02 0.0027 29.9 7.7 49 318-366 206-254 (269)
85 PF11621 Sbi-IV: C3 binding do 40.4 41 0.00088 27.6 3.6 37 326-362 11-60 (69)
86 PF04977 DivIC: Septum formati 40.2 78 0.0017 24.2 5.1 25 336-360 26-50 (80)
87 PF00769 ERM: Ezrin/radixin/mo 39.3 72 0.0016 31.0 5.8 41 323-363 78-118 (246)
88 PF02687 FtsX: FtsX-like perme 39.1 49 0.0011 26.0 3.9 40 352-391 25-64 (121)
89 PF11120 DUF2636: Protein of u 38.3 23 0.00049 28.7 1.9 19 377-395 9-27 (62)
90 KOG2077 JNK/SAPK-associated pr 37.2 1.1E+02 0.0023 34.6 7.2 67 299-365 315-381 (832)
91 PF11027 DUF2615: Protein of u 36.5 37 0.0008 29.8 3.0 27 370-396 50-76 (103)
92 PF09304 Cortex-I_coil: Cortex 36.3 2.8E+02 0.0061 24.7 8.4 61 305-365 15-75 (107)
93 PTZ00454 26S protease regulato 36.3 97 0.0021 32.1 6.5 40 323-362 25-64 (398)
94 COG4575 ElaB Uncharacterized c 36.1 2E+02 0.0044 25.5 7.5 21 373-393 82-102 (104)
95 PRK15192 fimbrial chaperone Bc 35.8 2.8E+02 0.0061 27.1 9.2 59 6-67 24-94 (234)
96 PF08912 Rho_Binding: Rho Bind 35.8 1.3E+02 0.0028 24.9 5.8 33 311-343 1-33 (69)
97 PRK15208 long polar fimbrial c 35.5 2.9E+02 0.0062 26.5 9.1 60 5-67 22-87 (228)
98 PF06305 DUF1049: Protein of u 35.0 55 0.0012 24.8 3.5 26 336-361 43-68 (68)
99 PF15030 DUF4527: Protein of u 34.9 1.3E+02 0.0028 30.6 6.8 43 322-364 25-67 (277)
100 COG4317 Uncharacterized protei 34.4 29 0.00063 29.9 2.0 16 379-394 32-47 (93)
101 COG3121 FimC P pilus assembly 34.4 3.3E+02 0.0071 26.3 9.3 59 6-67 29-94 (235)
102 PF00553 CBM_2: Cellulose bind 33.4 69 0.0015 26.6 4.1 47 21-67 13-79 (101)
103 COG2991 Uncharacterized protei 33.2 33 0.00071 28.9 2.1 22 373-394 4-26 (77)
104 PRK01026 tetrahydromethanopter 33.1 53 0.0011 27.7 3.3 25 312-336 14-38 (77)
105 PF02183 HALZ: Homeobox associ 33.1 1.9E+02 0.004 21.8 5.9 30 335-364 13-42 (45)
106 PF01618 MotA_ExbB: MotA/TolQ/ 33.1 88 0.0019 27.2 4.9 16 377-392 64-79 (139)
107 PF03962 Mnd1: Mnd1 family; I 32.8 1.1E+02 0.0023 28.7 5.7 53 311-364 67-119 (188)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.8 2.5E+02 0.0054 24.5 7.6 32 333-364 83-114 (132)
109 PF06667 PspB: Phage shock pro 32.1 50 0.0011 27.4 3.0 21 376-396 12-32 (75)
110 PF13815 Dzip-like_N: Iguana/D 31.9 1.3E+02 0.0028 25.9 5.6 37 327-363 80-116 (118)
111 TIGR02231 conserved hypothetic 31.8 1.2E+02 0.0026 32.0 6.4 49 314-362 125-173 (525)
112 PF08702 Fib_alpha: Fibrinogen 31.5 2.6E+02 0.0057 25.4 7.7 42 305-346 28-69 (146)
113 PF12325 TMF_TATA_bd: TATA ele 31.5 2.1E+02 0.0046 25.5 7.0 48 315-362 18-65 (120)
114 TIGR03017 EpsF chain length de 31.3 4.6E+02 0.01 26.5 10.3 84 305-392 303-414 (444)
115 PF03904 DUF334: Domain of unk 31.1 1.9E+02 0.0042 28.8 7.3 7 372-378 153-159 (230)
116 PRK15422 septal ring assembly 31.0 1.4E+02 0.0031 25.3 5.5 35 323-357 7-41 (79)
117 PF10186 Atg14: UV radiation r 30.9 2E+02 0.0042 27.0 7.1 20 314-333 85-104 (302)
118 TIGR01149 mtrG N5-methyltetrah 30.1 65 0.0014 26.8 3.3 24 312-335 11-34 (70)
119 PF04728 LPP: Lipoprotein leuc 29.9 2.9E+02 0.0063 22.1 6.9 41 308-348 5-45 (56)
120 TIGR03185 DNA_S_dndD DNA sulfu 29.8 1.6E+02 0.0035 32.0 7.2 7 26-32 5-11 (650)
121 PF04888 SseC: Secretion syste 29.8 2.2E+02 0.0048 27.8 7.5 58 330-390 18-75 (306)
122 COG1340 Uncharacterized archae 29.6 1.9E+02 0.0042 29.6 7.2 58 316-374 51-108 (294)
123 PF13815 Dzip-like_N: Iguana/D 29.6 1.6E+02 0.0035 25.4 5.8 38 320-357 80-117 (118)
124 smart00637 CBD_II CBD_II domai 29.4 1.5E+02 0.0032 23.9 5.3 44 24-67 9-72 (92)
125 PF13851 GAS: Growth-arrest sp 29.1 2.8E+02 0.0062 26.2 7.9 54 312-365 78-131 (201)
126 PF05667 DUF812: Protein of un 29.1 2.6E+02 0.0057 30.9 8.6 49 313-361 328-383 (594)
127 PHA00727 hypothetical protein 29.0 1.5E+02 0.0032 29.5 6.1 57 308-364 13-73 (278)
128 PF06305 DUF1049: Protein of u 28.7 52 0.0011 25.0 2.4 21 373-393 18-39 (68)
129 PF09738 DUF2051: Double stran 28.6 2.4E+02 0.0052 28.7 7.7 45 314-358 120-164 (302)
130 PF10205 KLRAQ: Predicted coil 28.3 3.7E+02 0.0079 23.8 7.7 53 311-363 3-55 (102)
131 PF10151 DUF2359: Uncharacteri 28.3 2.1E+02 0.0047 30.8 7.6 80 307-397 201-287 (469)
132 PRK15188 fimbrial chaperone pr 28.3 4.7E+02 0.01 25.5 9.3 59 6-67 29-93 (228)
133 PHA02562 46 endonuclease subun 28.3 1.8E+02 0.0039 30.1 7.0 6 27-32 7-12 (562)
134 PF07106 TBPIP: Tat binding pr 28.1 2.6E+02 0.0057 25.1 7.2 52 311-362 84-137 (169)
135 PF03961 DUF342: Protein of un 28.0 2.2E+02 0.0047 29.7 7.4 30 334-363 375-404 (451)
136 TIGR03079 CH4_NH3mon_ox_B meth 28.0 2.3E+02 0.005 30.2 7.6 49 20-68 281-350 (399)
137 PF10473 CENP-F_leu_zip: Leuci 27.8 3.3E+02 0.007 25.0 7.7 53 310-362 42-94 (140)
138 PF13863 DUF4200: Domain of un 27.7 3.7E+02 0.008 22.6 7.8 56 310-365 43-98 (126)
139 KOG0978 E3 ubiquitin ligase in 27.7 2E+02 0.0044 32.7 7.5 55 311-365 564-618 (698)
140 PF10633 NPCBM_assoc: NPCBM-as 27.5 1.3E+02 0.0028 23.5 4.5 47 21-67 5-55 (78)
141 PF00038 Filament: Intermediat 27.4 3.5E+02 0.0077 26.1 8.4 54 309-362 78-138 (312)
142 PF02344 Myc-LZ: Myc leucine z 27.2 1.4E+02 0.003 21.6 4.1 26 337-362 4-29 (32)
143 PF07334 IFP_35_N: Interferon- 27.1 98 0.0021 26.0 3.9 29 335-363 1-29 (76)
144 PF08647 BRE1: BRE1 E3 ubiquit 26.8 3.7E+02 0.0079 22.6 7.3 48 320-367 24-71 (96)
145 TIGR02209 ftsL_broad cell divi 26.6 1.9E+02 0.0042 22.8 5.4 33 329-361 26-58 (85)
146 PF15456 Uds1: Up-regulated Du 26.5 3.9E+02 0.0084 23.9 7.8 54 310-364 33-104 (124)
147 PF02960 K1: K1 glycoprotein; 26.5 52 0.0011 29.8 2.4 21 370-391 67-87 (130)
148 PRK13729 conjugal transfer pil 26.5 1.8E+02 0.0039 31.6 6.7 45 320-364 69-120 (475)
149 PF15397 DUF4618: Domain of un 26.1 2.6E+02 0.0056 28.1 7.3 74 302-383 52-125 (258)
150 KOG4657 Uncharacterized conser 26.0 3E+02 0.0066 27.6 7.6 30 335-364 80-109 (246)
151 PF11026 DUF2721: Protein of u 26.0 98 0.0021 27.2 4.0 43 324-366 18-61 (130)
152 PF12761 End3: Actin cytoskele 25.7 72 0.0016 30.9 3.3 21 318-338 101-121 (195)
153 PF08317 Spc7: Spc7 kinetochor 25.6 2.7E+02 0.0058 27.9 7.3 40 310-349 220-259 (325)
154 PF11668 Gp_UL130: HCMV glycop 25.3 1.1E+02 0.0023 28.9 4.2 44 12-55 101-154 (156)
155 PF15035 Rootletin: Ciliary ro 25.3 2.6E+02 0.0056 26.4 6.8 34 325-358 86-119 (182)
156 PRK15254 fimbrial chaperone pr 25.3 6.1E+02 0.013 24.8 9.5 59 6-67 18-82 (239)
157 PF00957 Synaptobrevin: Synapt 25.2 3.6E+02 0.0078 21.6 8.1 12 352-363 42-53 (89)
158 smart00787 Spc7 Spc7 kinetocho 25.0 3.2E+02 0.0069 27.8 7.8 35 310-344 215-249 (312)
159 PF10146 zf-C4H2: Zinc finger- 24.8 2.5E+02 0.0053 27.5 6.8 33 332-364 65-97 (230)
160 KOG0977 Nuclear envelope prote 24.6 1.9E+02 0.0042 31.9 6.6 46 317-362 145-190 (546)
161 smart00338 BRLZ basic region l 24.4 2.4E+02 0.0051 21.6 5.4 31 331-361 30-60 (65)
162 KOG4005 Transcription factor X 24.3 2.4E+02 0.0052 28.7 6.6 19 345-363 122-140 (292)
163 PF08614 ATG16: Autophagy prot 24.1 1.6E+02 0.0035 27.2 5.2 46 317-362 99-144 (194)
164 KOG1029 Endocytic adaptor prot 23.9 1.8E+02 0.004 33.9 6.4 38 325-362 373-410 (1118)
165 PF13234 rRNA_proc-arch: rRNA- 23.9 50 0.0011 31.6 1.9 51 314-364 215-265 (268)
166 PRK09413 IS2 repressor TnpA; R 23.9 1.9E+02 0.0042 24.7 5.3 33 332-364 76-108 (121)
167 COG3074 Uncharacterized protei 23.6 2.4E+02 0.0051 23.9 5.4 38 325-362 9-53 (79)
168 KOG4403 Cell surface glycoprot 23.5 1.9E+02 0.004 31.7 6.1 15 349-363 303-317 (575)
169 PF06120 Phage_HK97_TLTM: Tail 23.4 2.7E+02 0.0058 28.5 6.9 53 310-364 52-104 (301)
170 smart00787 Spc7 Spc7 kinetocho 23.4 1.9E+02 0.0041 29.4 5.9 37 328-364 226-262 (312)
171 PF04744 Monooxygenase_B: Mono 23.1 4.1E+02 0.0089 28.3 8.3 61 7-69 250-332 (381)
172 PF02883 Alpha_adaptinC2: Adap 23.1 4.3E+02 0.0093 21.7 9.3 48 20-67 23-74 (115)
173 PF11611 DUF4352: Domain of un 23.0 2.9E+02 0.0063 22.4 6.0 50 20-69 35-98 (123)
174 PF06810 Phage_GP20: Phage min 23.0 1.6E+02 0.0035 26.9 4.9 28 314-341 21-48 (155)
175 PF01105 EMP24_GP25L: emp24/gp 22.9 24 0.00053 30.0 -0.3 64 324-393 116-179 (183)
176 PF12301 CD99L2: CD99 antigen 22.8 55 0.0012 30.8 1.9 25 374-398 119-143 (169)
177 KOG1962 B-cell receptor-associ 22.5 2.6E+02 0.0056 27.6 6.4 48 311-358 163-210 (216)
178 PF03961 DUF342: Protein of un 22.5 3.6E+02 0.0078 28.0 7.9 53 311-363 332-397 (451)
179 COG1579 Zn-ribbon protein, pos 21.9 3.4E+02 0.0073 27.0 7.1 25 336-360 91-115 (239)
180 PRK09039 hypothetical protein; 21.9 2.8E+02 0.006 28.3 6.8 47 313-359 137-183 (343)
181 PF10031 DUF2273: Small integr 21.8 72 0.0016 24.5 2.0 22 372-393 28-50 (51)
182 COG1579 Zn-ribbon protein, pos 21.4 4.8E+02 0.01 26.0 8.0 22 336-357 151-172 (239)
183 PF00170 bZIP_1: bZIP transcri 21.3 3.8E+02 0.0081 20.5 5.9 34 329-362 28-61 (64)
184 KOG3202 SNARE protein TLG1/Syn 21.2 8.2E+02 0.018 24.3 11.0 22 371-392 213-234 (235)
185 PF00170 bZIP_1: bZIP transcri 21.1 3.6E+02 0.0078 20.6 5.8 34 323-356 29-62 (64)
186 KOG0972 Huntingtin interacting 21.1 2.5E+02 0.0055 29.4 6.2 53 319-376 272-338 (384)
187 KOG3313 Molecular chaperone Pr 21.0 1.6E+02 0.0034 28.6 4.5 39 324-365 121-159 (187)
188 PF13094 CENP-Q: CENP-Q, a CEN 21.0 3.9E+02 0.0084 23.8 6.8 20 326-345 33-52 (160)
189 PRK13729 conjugal transfer pil 20.9 2.1E+02 0.0045 31.2 5.8 19 345-363 108-126 (475)
190 KOG1691 emp24/gp25L/p24 family 20.5 3.1E+02 0.0068 27.0 6.5 63 328-392 135-201 (210)
191 PRK15195 fimbrial chaperone pr 20.5 7.8E+02 0.017 23.8 9.4 59 6-67 27-91 (229)
192 KOG3564 GTPase-activating prot 20.3 3.3E+02 0.0072 30.3 7.2 69 296-364 18-100 (604)
193 TIGR02212 lolCE lipoprotein re 20.2 88 0.0019 30.6 2.8 14 354-367 296-309 (411)
194 PRK11546 zraP zinc resistance 20.1 2E+02 0.0043 26.6 4.8 13 348-360 96-108 (143)
195 COG5407 SEC63 Preprotein trans 20.1 65 0.0014 35.3 2.0 21 373-393 193-213 (610)
196 PF00927 Transglut_C: Transglu 20.0 3.1E+02 0.0066 22.5 5.6 48 18-67 12-71 (107)
197 PRK06285 chorismate mutase; Pr 20.0 5.2E+02 0.011 21.5 8.5 55 320-378 7-75 (96)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.4e-28 Score=216.91 Aligned_cols=130 Identities=40% Similarity=0.662 Sum_probs=117.5
Q ss_pred CCCceEec-CeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH 81 (401)
Q Consensus 3 ~~lL~I~P-~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~ 81 (401)
..+|.|+| .+|.|.+++++++++.|+|+|+++.+||||||||+|++||||||.|+|.||++++|.
T Consensus 6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~-------------- 71 (218)
T KOG0439|consen 6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIE-------------- 71 (218)
T ss_pred cCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEE--------------
Confidence 46899999 799999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCC--CCce
Q 015735 82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYV 159 (401)
Q Consensus 82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~--~~~v 159 (401)
|++||+...|+|++|||||+||++.++.... .+ ..+.|+..+ +..+
T Consensus 72 ------------------------------v~~q~~~~~P~d~~~r~kF~v~~~~~~~~~~-~~-~~~~~~~~k~~~~~~ 119 (218)
T KOG0439|consen 72 ------------------------------VTHQPFEKSPPDFKSRHKFLIQSLKAPPPTT-RD-VVDLWKFQKETPKES 119 (218)
T ss_pred ------------------------------EEeccCccCchhhcccceEEEEEEecCCccc-cc-hhhhccccccccccc
Confidence 9999998889999999999999999998722 22 357888877 8999
Q ss_pred eeEEEEEEEeCCCCCCCcC
Q 015735 160 EEKKLRVILMSPPQSPVLL 178 (401)
Q Consensus 160 ~e~KLrVvf~~p~~~p~~~ 178 (401)
.+.|++|.|+.|+.++...
T Consensus 120 ~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 120 FETKLRVVFVAPTETDSVV 138 (218)
T ss_pred cceeeEEEeeCCCCCcccc
Confidence 9999999999988775443
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=9.4e-28 Score=225.04 Aligned_cols=121 Identities=35% Similarity=0.626 Sum_probs=111.5
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcccccc
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLL 85 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~~~~ 85 (401)
++|+| ++.|..|++.+++|.+-+.|++.++|+||||||+||.||||||.|+|.|++++.|.
T Consensus 3 veisp-~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~Ve------------------ 63 (242)
T COG5066 3 VEISP-QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVE------------------ 63 (242)
T ss_pred eEecC-ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEE------------------
Confidence 45666 45666699999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhccchhhhhhccccceEEeccCCCCC-CCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceeeEEE
Q 015735 86 ECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAP-PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 164 (401)
Q Consensus 86 ~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~P-pd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e~KL 164 (401)
|++|+.++.| ||.+||||||||+...+...+.+|+ .++|+..++.-+++.|+
T Consensus 64 --------------------------Vilq~l~eEpapdfKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkI 116 (242)
T COG5066 64 --------------------------VILQGLTEEPAPDFKCRDKFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKI 116 (242)
T ss_pred --------------------------EEeeccccCCCCCccccceeEEEEeccChhhccchH-HHHHHhhccccchhhhe
Confidence 9999999887 8999999999999999999888887 69999999999999999
Q ss_pred EEEEeCCC
Q 015735 165 RVILMSPP 172 (401)
Q Consensus 165 rVvf~~p~ 172 (401)
||+|..-.
T Consensus 117 rcvyse~~ 124 (242)
T COG5066 117 RCVYSEEE 124 (242)
T ss_pred eEEeeccc
Confidence 99998543
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=6.5e-23 Score=164.72 Aligned_cols=105 Identities=37% Similarity=0.606 Sum_probs=86.0
Q ss_pred ceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhccccc
Q 015735 6 LDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTL 84 (401)
Q Consensus 6 L~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~~~ 84 (401)
|.|+|. .+.|..++++..++.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~----------------- 64 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEIT----------------- 64 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEE-----------------
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEE-----------------
Confidence 689996 89999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCc-chhhhhhccCC
Q 015735 85 LECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDE-DITSDMFAKDS 155 (401)
Q Consensus 85 ~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~-di~~~mwkk~~ 155 (401)
|+++++...+.+. .+|||+||++.+|.+..+. +....+|++..
T Consensus 65 ---------------------------I~~~~~~~~~~~~-~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 65 ---------------------------ITFQPFDFEPSNK-KKDKFLIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp ---------------------------EEE-SSSTTTTST-SSEEEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred ---------------------------EEEEecccCCCCC-CCCEEEEEEEEcCCCccchhhhHHHHHhccC
Confidence 9999987764432 3999999999998886544 44578888753
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.09 E-value=4.4e-05 Score=61.47 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=57.2
Q ss_pred CCceEecCeeEEec-ccCceeEEEEEEEcCCCCeEEEEEeeCC--CCceeeeCCceeeCCCCeEEEeec
Q 015735 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS--PKKYCVRPNVSIIKPKAISDFTGI 69 (401)
Q Consensus 4 ~lL~I~P~EL~F~~-p~~k~~t~~L~L~N~Sd~~VAFKVKTTa--PkkYcVRPN~GiI~Pg~s~~I~~~ 69 (401)
+.|.+.|.+|.|-. ..+...+..++|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+.++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~ 70 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVT 70 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEE
Confidence 46889999999974 4577888999999999999999997543 468999999999999999999944
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.49 E-value=0.0076 Score=56.94 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=49.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC-cchhhHHHHHHHHHHHHHhc
Q 015735 321 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVG-FPLLFVCMVALIGLVVGYLS 392 (401)
Q Consensus 321 kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~G-f~llfv~~v~llg~~lGyl~ 392 (401)
...+++.++.++...|..|.+|.....+|..++|+|++.|+.+....+.+.= =-|++=..|+++|+++|.++
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3345566677777888889999998888888888888887765432211111 13444567888888888875
No 6
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=94.02 E-value=0.56 Score=39.24 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=50.0
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC----C-----CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS----P-----KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa----P-----kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.|.-+.|.. +..+..++|.|.+++++.+.++... + ..+.|-|..-.|+||+.-.|.
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vR 69 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVR 69 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEE
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEE
Confidence 567888888886 3457899999999999999987664 1 268999999999999999998
No 7
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.04 E-value=1.9 Score=34.83 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKL-------ATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~-------a~~e~~~Lq~El~~lrr~~ 364 (401)
+..|..+|..+..|+.--......|+.||.. |.+++++|+.|++.||++-
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888889999965 4567889999999999864
No 8
>PRK04406 hypothetical protein; Provisional
Probab=87.20 E-value=3.1 Score=34.05 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=44.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+++..++..||.++.--+.+|..|.+.=-..-++.+.|+.+|..|+.+-.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667889999999999999999999998888999999999999977653
No 9
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.93 E-value=2.4 Score=40.35 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=34.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cccCcchhhHHHHH-HHHHHHHHhc
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR-VQVGFPLLFVCMVA-LIGLVVGYLS 392 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~-~~~Gf~llfv~~v~-llg~~lGyl~ 392 (401)
.++...+.+..+.+.--.+|+++-..+..+++.|+.|++.+++....+- -.||. |+++| |||++|-||.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~----v~~~GlllGlilp~l~ 195 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG----VAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH----HHHHHHHHHHHhcccc
Confidence 3333344444444444444555555555555555555555554432111 12453 33333 4899999997
No 10
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.79 E-value=3.5 Score=32.74 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=41.3
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015735 319 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 319 k~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~ 366 (401)
..++..|+.++.-.+.+|..|.+.=-.--++.++|+.+|..|+.+...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999988754
No 11
>PRK04325 hypothetical protein; Provisional
Probab=84.25 E-value=4.2 Score=32.99 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+..++..||.++.--+.+|..|.+.=-..-++.+.|+.+|..|+.+-.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999988888889999999999976653
No 12
>PRK10404 hypothetical protein; Provisional
Probab=83.01 E-value=7.2 Score=33.51 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.1
Q ss_pred CcchhhHHHHHHHHHHHHHhcc
Q 015735 372 GFPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 372 Gf~llfv~~v~llg~~lGyl~~ 393 (401)
--|+--|-+.|.+|+++|+|+.
T Consensus 78 e~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 78 EKPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred hCcHHHHHHHHHHHHHHHHHHh
Confidence 3688888899999999999975
No 13
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=81.48 E-value=19 Score=29.45 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHHHHHHhccc
Q 015735 373 FPLLFVCMVALIGLVVGYLSHP 394 (401)
Q Consensus 373 f~llfv~~v~llg~~lGyl~~~ 394 (401)
-|+.-|.+.+.+|++||+|+.+
T Consensus 72 ~P~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC
Confidence 6999999999999999999863
No 14
>PRK02119 hypothetical protein; Provisional
Probab=80.90 E-value=7.9 Score=31.41 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+..++..||.++.--+.+|..|.+.=-..-++.+.|+.+|..|+.+-.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999988888899999999999977653
No 15
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.33 E-value=7.6 Score=31.39 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015735 318 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 318 lk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~ 366 (401)
+..++..||.++.-.+.+|..|.+.=-..-++.+.|+.+|..|+.+-..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888999999999999999999988888999999999999776543
No 16
>PRK00846 hypothetical protein; Provisional
Probab=79.88 E-value=7.9 Score=32.19 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++..++..+|.++.-.+.+|..|.+.=-..-++.++|++.|..|+.+-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999988765
No 17
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=79.42 E-value=10 Score=38.96 Aligned_cols=57 Identities=12% Similarity=0.320 Sum_probs=45.7
Q ss_pred CeeEEecccCceeEEEEE-EEcCCCCeEEEEEeeCC------------CCceeeeCCceeeCCCCeEEEe
Q 015735 11 LELKFTFEVKKQSTCVIQ-LGNKSDQCVAFKVKTTS------------PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 11 ~EL~F~~p~~k~~t~~L~-L~N~Sd~~VAFKVKTTa------------PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
-.|.|...........|. |.|.+..-|-|.-+--. ...|..-.+.|+|.||++..|.
T Consensus 237 ~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~ 306 (426)
T PF14646_consen 237 IRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFP 306 (426)
T ss_pred eEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEE
Confidence 368888776655555555 99999999999876443 3568889999999999999999
No 18
>PRK00736 hypothetical protein; Provisional
Probab=79.40 E-value=8.2 Score=30.88 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=39.7
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.++..+|.++.-.+.+|..|.+.=-.--++.+.|+.+|..|+.+-.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999988888899999999999976653
No 19
>PRK00295 hypothetical protein; Provisional
Probab=79.31 E-value=8.3 Score=30.84 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.7
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.++..+|.++.-.+.+|..|.+.=-.--++.+.|+.+|..|+.+-.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999988888889999999999977653
No 20
>PRK10132 hypothetical protein; Provisional
Probab=76.27 E-value=33 Score=29.95 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred CcchhhHHHHHHHHHHHHHhccc
Q 015735 372 GFPLLFVCMVALIGLVVGYLSHP 394 (401)
Q Consensus 372 Gf~llfv~~v~llg~~lGyl~~~ 394 (401)
--|+.-|.+.|.+|+++|+|+.+
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999763
No 21
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.88 E-value=32 Score=27.31 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHHHHHHHHHHHhcc
Q 015735 318 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 318 lk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~~lGyl~~ 393 (401)
++.+++..+.++.+-+..|.+|.......-++...+.+.|+-+..- .+ -++=.++=|+++.++||++|
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~k------W~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TK------WIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHhC
Confidence 3445555566665555555555333322223335666777666532 12 11123444566667777764
No 22
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.66 E-value=24 Score=32.30 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHh
Q 015735 376 LFVCMVALIGLVVGYL 391 (401)
Q Consensus 376 lfv~~v~llg~~lGyl 391 (401)
++-+++|.+++++||+
T Consensus 158 ~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 158 LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556677777888876
No 23
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=73.72 E-value=8.6 Score=32.24 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=32.3
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCceee-eCCce-eeCCCCeEEEe
Q 015735 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVS-IIKPKAISDFT 67 (401)
Q Consensus 22 ~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcV-RPN~G-iI~Pg~s~~I~ 67 (401)
...-.++|.|++++...|.++-..+..+.+ .|... -|.||++..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~ 79 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVP 79 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEE
Confidence 345789999999999999999988878888 66555 49999999988
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.36 E-value=14 Score=32.06 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=35.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+..-+.++...+..|-.++.+-+..|..|.||...-..||+.|+.-|..+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555666666677777777777777777777777777777777766654
No 25
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=72.21 E-value=35 Score=32.61 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=46.7
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCC-----CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaP-----kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
|.+.|..+.|.. +.....++|.|.++.++...+..... .-|-|-|..-.|+||+.-.|.
T Consensus 26 v~l~~tRvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vR 89 (230)
T PRK09918 26 MVPETSVVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVR 89 (230)
T ss_pred EEEccEEEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEE
Confidence 567777888876 45568999999999877766654322 359999999999999999888
No 26
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.61 E-value=13 Score=37.11 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=56.8
Q ss_pred cccccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 296 DASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+++....++....++.++..++..++.-|+.+..+...-|..+.++-+..-++..+|++|++.++....
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344345556667788888888889999999999999999999999999988999999999988876554
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.19 E-value=34 Score=29.78 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=45.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~ 366 (401)
.++=..+..++.++.+.-+-|..|+..=...+.||..|+-|-+-||++-..
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999988653
No 28
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=66.48 E-value=17 Score=31.52 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=36.2
Q ss_pred cCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 300 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 300 l~~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+-+.=+..+..-++.|.+.-.+++..|..|.+...-|.+|.++-..+....++|.++|+.+...
T Consensus 23 iin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 23 IINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455667889999899999999999999999999999999999999999999998864
No 29
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=66.03 E-value=45 Score=32.46 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=46.3
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC------CC-----ceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PK-----KYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa------Pk-----kYcVRPN~GiI~Pg~s~~I~ 67 (401)
-|.|.|.-+.|... .....++|.|.++.++.....+.. |. -|-|-|..--|+||+.-.|.
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lR 99 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVR 99 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEE
Confidence 36788888888763 456799999999887766654322 21 39999999999999999888
No 30
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=65.79 E-value=49 Score=31.94 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=47.5
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCC----------ceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPK----------KYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPk----------kYcVRPN~GiI~Pg~s~~I~ 67 (401)
-|.|.|.-+.|.. +.....++|.|.++.++.-......-+ -|-|-|..--|+||+.-.|.
T Consensus 26 ~i~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lR 95 (246)
T PRK09926 26 DIVISGTRIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIK 95 (246)
T ss_pred eEEeCceEEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEE
Confidence 3677888888886 445789999999998877666554221 28999999999999999988
No 31
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.46 E-value=23 Score=34.50 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=47.1
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcc
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE-VLRRKSN 365 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~-~lrr~~~ 365 (401)
..++.||.....+|.++.+|...+...+.+-..|++++...|.|+- +|-||.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999999999999999999999999986 6666654
No 32
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.93 E-value=27 Score=30.75 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=41.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+..-+.++...+..+-.++.+-+..|..|.||...-.-||+.|+.-|+.+..
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445566667777888888888888999999988888899999998887743
No 33
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.73 E-value=38 Score=29.80 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~ 366 (401)
.++=.++..++.++.+.-+.|..|+..=...+.||..|+-|-+-||++-..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999988753
No 34
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=62.43 E-value=16 Score=35.77 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=55.5
Q ss_pred ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH------------------HHHHHH-HHHHHHHHH
Q 015735 299 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------------------LATREK-DMLKHELEV 359 (401)
Q Consensus 299 ~l~~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~------------------~a~~e~-~~Lq~El~~ 359 (401)
+|.......+..+-...+.||+.+..+++++++- |+|-+.|-| ..+.|+ .|+-+|+.-
T Consensus 109 el~S~e~sEF~~lr~e~EklkndlEk~ks~lr~e---i~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~ 185 (220)
T KOG3156|consen 109 ELVSIERSEFANLRAENEKLKNDLEKLKSSLRHE---ISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTN 185 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHH
Confidence 4455555666666677777777666666666552 222222211 122222 578888888
Q ss_pred HHhhccccccccCcchhhHHHHHHHHHHHHHh
Q 015735 360 LRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 391 (401)
Q Consensus 360 lrr~~~~~~~~~Gf~llfv~~v~llg~~lGyl 391 (401)
||.....-+- .-.-+++-+++|...++|||+
T Consensus 186 lk~qi~s~K~-qt~qw~~g~v~~~~Al~La~~ 216 (220)
T KOG3156|consen 186 LKTQIESVKT-QTIQWLIGVVTGTSALVLAYL 216 (220)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8887765323 246778888899999999997
No 35
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=61.85 E-value=47 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=15.0
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 015735 373 FPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 373 f~llfv~~v~llg~~lGyl~~ 393 (401)
+-=+=.-+.||+|+++|-|+-
T Consensus 69 ir~~KmwilGlvgTi~gslii 89 (98)
T PF11166_consen 69 IRDIKMWILGLVGTIFGSLII 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 443455678999999988764
No 36
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.14 E-value=30 Score=35.72 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchh
Q 015735 306 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 376 (401)
Q Consensus 306 ~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~ll 376 (401)
.++.++...+...+.+|+..+.+..+|...++.++.+=..-.++.++.|+||+. +++ + ...|=||+
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~-~-mtD~sPlv 331 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGS-S-MTDGSPLV 331 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-C-CCCCCHHH
Confidence 345667777888888999999999999999999999988888999999999875 232 1 23566664
No 37
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.98 E-value=34 Score=27.90 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=22.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q 015735 323 NVMDSQLREAEHTIRKLMEARK-------LATREKDMLKHELEVLRRK 363 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~-------~a~~e~~~Lq~El~~lrr~ 363 (401)
..++.|...|-.+|..|..|-. ...+++..|++|...||..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655544433 3344466666666666644
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.73 E-value=48 Score=27.06 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..+.-|+.+...++.+- ..|.+++..-.+++++|++|-.....+.
T Consensus 18 eti~~Lq~e~eeLke~n-------~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 18 ETIALLQMENEELKEKN-------NELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444443 3444777777788888988887766543
No 39
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.41 E-value=24 Score=33.04 Aligned_cols=57 Identities=32% Similarity=0.407 Sum_probs=36.7
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
...+.++.++++.++..++.++.++. .=+.=++||...+++.+.|++|++.|+.+-.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665552 2233347777888888888888888876653
No 40
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=59.08 E-value=71 Score=31.02 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=43.8
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC------------CCCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------------SPKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT------------aPkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+++.-+.|.. +....+++|.|.++.++.=.+... ...-|-|-|..=-|+||+...+.
T Consensus 28 v~l~~TRvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lR 98 (236)
T PRK11385 28 VVVGGTRFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLR 98 (236)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEE
Confidence 456667788876 445789999999998654444221 11249999999999999999988
No 41
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=58.67 E-value=36 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.0
Q ss_pred EEEEcCCCCeE-EEEEeeCCCCceeeeCCceeeCCCCeEEEee
Q 015735 27 IQLGNKSDQCV-AFKVKTTSPKKYCVRPNVSIIKPKAISDFTG 68 (401)
Q Consensus 27 L~L~N~Sd~~V-AFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~ 68 (401)
.+++|.+++++ -.+|+|+ =+-..+......|.||++..|.+
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKV 43 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEE
Confidence 57889998865 5666554 57777788888999999998873
No 42
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=56.96 E-value=9.9 Score=26.25 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=8.9
Q ss_pred ccccccCcchhhHHHHHHHHHH
Q 015735 366 LRRVQVGFPLLFVCMVALIGLV 387 (401)
Q Consensus 366 ~~~~~~Gf~llfv~~v~llg~~ 387 (401)
.++.|.||.|+=++++-.|+.+
T Consensus 9 ~~~~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 9 RRRRQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp ---------HHHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHHH
Confidence 3457789999988766655544
No 43
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.43 E-value=35 Score=34.25 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=44.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+....++...+|.+.+.++.+.+.-|..|+.+...++++++.|+++++...++-
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566677777888888888899999999999999999999999998766554
No 44
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.15 E-value=88 Score=28.32 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=44.7
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchh
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 376 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~ll 376 (401)
+.++-+-...+......+...+.+....+.+++++-..+-.++++++....-||.++ ...+.|-+
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~----~~~~~P~l 143 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG----GLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcHH
Confidence 344444555555566667777777777888888888888888888888888887654 22456655
No 45
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.86 E-value=35 Score=36.89 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhc
Q 015735 333 EHTIRKLMEAR----------KLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 333 ~~~I~kL~Ee~----------~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..++.+|+|+- ..+-|++++++++|+.|+|+-
T Consensus 430 gEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 430 GELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666543 356789999999999999875
No 46
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=55.03 E-value=23 Score=28.61 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=29.7
Q ss_pred EEEEEEEcCCCCeEEEEEee-----CCCCceeeeCCceeeCCCCeEEEe
Q 015735 24 TCVIQLGNKSDQCVAFKVKT-----TSPKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 24 t~~L~L~N~Sd~~VAFKVKT-----TaPkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
.-.|+|.|.....+.|.|.. ..|..|.|.| |++..+.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~v~a-------g~~~~~~ 62 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYTVAA-------GQTVSLT 62 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEEECC-------CCEEEEE
Confidence 67899999999999999987 4566666655 7777766
No 47
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.60 E-value=66 Score=27.37 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 340 MEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 340 ~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+|.++-...-....+||..||++.
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhh
Confidence 3566666666777889999999875
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=53.05 E-value=80 Score=28.87 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=28.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+-+|.+.....+-.+....+-+.+.|..|.++-...+++++.|..||+.||+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333444444455566666666666666666666666666643
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.91 E-value=64 Score=32.19 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=27.4
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..+.+++.++.....++.+.+.-+..|.++......++.+++.|+.-+.+..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555556666666665555443
No 50
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.24 E-value=61 Score=28.78 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=34.4
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEAR---KLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~---~~a~~e~~~Lq~El~~lrr~ 363 (401)
....++..+..++..-.+|..-|.+|+++. +....+...|++|+.-|..+
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666777777777777777665 56667777888888877754
No 51
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.99 E-value=32 Score=34.81 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=25.5
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-+.-||-+|.++++.+.+...-+.+..-|-..--+..+.|+.|++.||-..
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443333333344445555666666666443
No 52
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=50.83 E-value=43 Score=27.84 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.1
Q ss_pred CceeEEEEEEEcCCCCeEEEEEeeC
Q 015735 20 KKQSTCVIQLGNKSDQCVAFKVKTT 44 (401)
Q Consensus 20 ~k~~t~~L~L~N~Sd~~VAFKVKTT 44 (401)
....+-.|+|+|.+++.+.|++.-.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~ 31 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHV 31 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeE
Confidence 3446789999999999999987654
No 53
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=50.44 E-value=1.4e+02 Score=28.54 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=45.9
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC--------CCceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS--------PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa--------PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
-+.+.|.-+.|... .....++|.|.++.++.-...+.. -.-|-|-|..--|+||+...|.
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lR 90 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLR 90 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEE
Confidence 36677888888874 446799999998887665554322 1239999999999999999888
No 54
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.96 E-value=72 Score=28.07 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=35.6
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
..++..+++.|+.++...+.++.-+..-...|..+-+.+......++.|+.-++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777776666666666666666666666666666666666665553
No 55
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.25 E-value=79 Score=25.30 Aligned_cols=33 Identities=42% Similarity=0.547 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
...+++|.||+.-...|. ++.+.|+.||+.+|.
T Consensus 28 ~~~e~kLqeaE~rn~eL~-------~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELE-------QEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 345566666654444443 556677777777764
No 56
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=48.91 E-value=1.5e+02 Score=28.82 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=45.2
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC------CCC----ceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------SPK----KYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT------aPk----kYcVRPN~GiI~Pg~s~~I~ 67 (401)
-+.|.+.-+.|.. +....+++|.|.++.++.=.+... .|. -|-|-|..=.|+||+.-.+.
T Consensus 11 ~v~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lR 80 (233)
T PRK15246 11 AVNIDRTRIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLR 80 (233)
T ss_pred EEEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEE
Confidence 3567778888886 345689999999988654444222 121 49999999999999999888
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.65 E-value=58 Score=36.01 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=53.9
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcch
Q 015735 309 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPL 375 (401)
Q Consensus 309 ~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~l 375 (401)
..+.+|+.-.+.-+++|+++...-...+.+|.+|-..-..|+++||+|-+-|++.... .||+.
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~----Q~iS~ 331 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL----QGISG 331 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCH
Confidence 3467889888889999999999999999999999999999999999999999988732 36664
No 58
>PRK11637 AmiB activator; Provisional
Probab=48.45 E-value=79 Score=32.41 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 327 SQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 327 ~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
.++.+.+.-|.+|.++-..+-.+.+.++.+|.
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.70 E-value=71 Score=30.21 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=23.7
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTI-------RKLMEARKLATREKDMLKHELEV 359 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I-------~kL~Ee~~~a~~e~~~Lq~El~~ 359 (401)
.+..||..+..|..+....+..+ .+|+|.=..+.+++..|+++|..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444444 44455455555555555555543
No 60
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=47.59 E-value=1.3e+02 Score=24.17 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=34.1
Q ss_pred CceeEEEEEEEcCCCCeEE-EEEeeCCCCceeee--CCc-eeeCCCCeEEEe
Q 015735 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PNV-SIIKPKAISDFT 67 (401)
Q Consensus 20 ~k~~t~~L~L~N~Sd~~VA-FKVKTTaPkkYcVR--PN~-GiI~Pg~s~~I~ 67 (401)
..+....+...|+++.++. |.+.-..|+-+.++ |-. ..|.||+.+.-.
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~ 68 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQV 68 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEE
Confidence 4567788899999988774 88887778766665 443 378888754433
No 61
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=47.21 E-value=1.7e+02 Score=28.15 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=44.1
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC-------CCceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa-------PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
-+.+.+.-+.|... .....++|.|.++.++.=...+.. ..-|-|-|..=-|+||+.-.|.
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lR 86 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIR 86 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEE
Confidence 35677778888773 346799999999886443332321 1249999999999999999988
No 62
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=47.20 E-value=49 Score=29.89 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
.+-.+.++.....-..|..|+-|+++-.+||++|+.||
T Consensus 82 K~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 82 KKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33345555555666789999999999999999999997
No 63
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=46.27 E-value=90 Score=27.86 Aligned_cols=55 Identities=25% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 309 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 309 ~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
..-+|+++.|=..|-..+.--++=.+.|.+|.+|.+.+-+|+.+.-.|-+.|.++
T Consensus 79 i~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 79 IRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888776555557788888888888877777777777766654
No 64
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=46.03 E-value=50 Score=27.34 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDML 353 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~L 353 (401)
...+..|+..=-+-.-|..+|.||..||+.+.++..+|
T Consensus 32 ~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 32 DQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 33333333333333446779999998888877666554
No 65
>PRK11637 AmiB activator; Provisional
Probab=45.59 E-value=1.1e+02 Score=31.28 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=23.7
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
.+..+..++...+.++.+++.-|..+..+-....++.+.++.+++.++..
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444445555555555555555555555544433
No 66
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.38 E-value=54 Score=39.33 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhc
Q 015735 333 EHTIRKLMEAR----------KLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 333 ~~~I~kL~Ee~----------~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..++.+|+|+- ..+-||+.+++++|+.|+||-
T Consensus 1200 gellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1200 GELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666543 346789999999999999885
No 67
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=45.02 E-value=1.8e+02 Score=28.14 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=43.7
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC------CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa------PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+.+.-+.|.. +....+++|.|.+++++.-...... .--|-|-|..=.|+||+...|.
T Consensus 24 v~l~~TRvIy~~---~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lR 88 (229)
T PRK15211 24 FVLNGTRFIYDE---GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIR 88 (229)
T ss_pred EEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 456666777875 3456899999999887554443311 1249999999999999999988
No 68
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=44.56 E-value=29 Score=26.45 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=27.7
Q ss_pred EEEEcCCCCeEEEE-EeeCCCCceeeeCCceeeCCCCeEEEe
Q 015735 27 IQLGNKSDQCVAFK-VKTTSPKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 27 L~L~N~Sd~~VAFK-VKTTaPkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
|++.|+|.-+|.|- ++....++=..-.+.++|.|+++..+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~ 42 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFP 42 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEE
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEe
Confidence 68999999999885 555544443333555599999999999
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.20 E-value=1.5e+02 Score=31.84 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHHHHHHHH
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLV 387 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~~ 387 (401)
...+.+.++++..+++.++.+..+....|..|+.+-..|.+..++++..|..++|...++ .-.|.|=-|.-+..-+.--
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~-~lpgip~~y~~~~~~~~~~ 456 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS-NLPGLPEDYLEMFFEVSDE 456 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHH
Confidence 455667788888889999999899999999999999999999999999999999877444 4479999888887766655
Q ss_pred HHHhcccCC
Q 015735 388 VGYLSHPQN 396 (401)
Q Consensus 388 lGyl~~~~n 396 (401)
+.-+.+..+
T Consensus 457 i~~l~~~L~ 465 (569)
T PRK04778 457 IEALAEELE 465 (569)
T ss_pred HHHHHHHhc
Confidence 555544433
No 70
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.14 E-value=57 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=16.8
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKH 355 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~ 355 (401)
+...++..+...+..+.+.+.-+.++..+|.....++.+|++
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444433333333333
No 71
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.98 E-value=88 Score=28.11 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=19.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
+.+|...++++-.++.+-+.-+.-|.||...-.-||++|+.-|
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 3334344444444444444445555554444444444444433
No 72
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.31 E-value=88 Score=26.55 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
+.=|++.+.++++|-.....-+.-+...|..-.+++++||+|-..-
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334455555555544444444444555555666777777776543
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.59 E-value=66 Score=32.74 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=34.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++..++.+++.+....+..+..|.++.+...++..+|++|++.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555566677777778888888888888888888888887774
No 74
>smart00340 HALZ homeobox associated leucin zipper.
Probab=42.30 E-value=45 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 015735 345 LATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 345 ~a~~e~~~Lq~El~~lrr~~ 364 (401)
+-+.||+.||+|+..||.-.
T Consensus 16 ~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 16 SLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44578899999999999643
No 75
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.27 E-value=1.2e+02 Score=26.62 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 015735 319 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDM-------LKHELEVL 360 (401)
Q Consensus 319 k~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~-------Lq~El~~l 360 (401)
..|-+.+.++|.+-+..|+|+..|-.+-.-.|+. ||.||+..
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677888888899999999998877666655 56666644
No 76
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.04 E-value=68 Score=25.12 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARK-LATREKDMLKHELEVLR 361 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~-~a~~e~~~Lq~El~~lr 361 (401)
++.+..+...+..+.||+.+|..+.-|-+ ....++..++..|...|
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr 67 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYR 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34556667777888899988888854433 33345555544444433
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.55 E-value=1e+02 Score=33.45 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=13.6
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLME 341 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~E 341 (401)
..++++.++..++.++.++..-+..|.+
T Consensus 224 ~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 224 KYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444
No 78
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.43 E-value=1.8e+02 Score=31.36 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=71.7
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHHHHHHH
Q 015735 307 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGL 386 (401)
Q Consensus 307 ~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~ 386 (401)
..+.+...++++...|...+.+..+-...+..|+.+=..|-++.++++++|-.++|+..++ .=.|.|==|.-+.....-
T Consensus 373 ~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~-nLPGlp~~y~~~~~~~~~ 451 (560)
T PF06160_consen 373 PYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS-NLPGLPEDYLDYFFDVSD 451 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3456667778888888889999999999999999999999999999999999999988655 457999888877777666
Q ss_pred HHHHhcccCC
Q 015735 387 VVGYLSHPQN 396 (401)
Q Consensus 387 ~lGyl~~~~n 396 (401)
-+.-+..-.|
T Consensus 452 ~i~~l~~~L~ 461 (560)
T PF06160_consen 452 EIEELSDELN 461 (560)
T ss_pred HHHHHHHHHh
Confidence 6665554433
No 79
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=41.14 E-value=2.2e+02 Score=27.89 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=44.4
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCC-CeEEEEEeeCCC----C---ceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTSP----K---KYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd-~~VAFKVKTTaP----k---kYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+++.-+.|+. +....+++|.|.++ .++.-.+..... + -|-|-|..--|+||+.-.+.
T Consensus 39 v~l~~TRvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lR 105 (243)
T PRK15290 39 VVIGGTRVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLR 105 (243)
T ss_pred EEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEE
Confidence 567777888886 34467999999986 456655554411 1 39999999999999999888
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.04 E-value=2.9e+02 Score=28.50 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 336 IRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
+..|..+...+.+..+.|.+-++..
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.02 E-value=63 Score=36.21 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
...+-.|++.||..|.-+...=.|.+..|..|+...+..-.+.+.||+|.|.|..|.
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999998888889999999999977788889999999999887654
No 82
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=40.85 E-value=1.6e+02 Score=24.86 Aligned_cols=51 Identities=25% Similarity=0.205 Sum_probs=43.7
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+--.+|+.+|+.-+..+..-..+|.-|+..=..-++-+.+|+.++..+++.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334578889988888888888999999999888999999999999998874
No 83
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.80 E-value=40 Score=30.70 Aligned_cols=52 Identities=33% Similarity=0.402 Sum_probs=28.4
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR 368 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~ 368 (401)
...+-++..+++..++..-.+-+=|+- .|| .|+-|||..||+.+....+..+
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkw--aKl-------~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKW--AKL-------NRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544444333332 122 4777888888888877665443
No 84
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=40.49 E-value=1.2e+02 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015735 318 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 318 lk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~ 366 (401)
+|..+..-..+..|..+-|.-|..|+..-.++..+|++|+..||+-...
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455567788888999999999999999999999999986544
No 85
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=40.43 E-value=41 Score=27.56 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHH-----HHHHHHHH--------HHHHHHHHHHHh
Q 015735 326 DSQLREAEHTIRKLMEA-----RKLATREK--------DMLKHELEVLRR 362 (401)
Q Consensus 326 ~~k~~Ea~~~I~kL~Ee-----~~~a~~e~--------~~Lq~El~~lrr 362 (401)
++.+-+|...|++|.|+ ||.|.++- +-||.||+.|-.
T Consensus 11 der~~~AN~Ai~~L~~~DSI~NRR~AQR~VNK~~~D~~~~~QK~LD~i~A 60 (69)
T PF11621_consen 11 DERVMSANDAISKLQQKDSIQNRRAAQREVNKAPMDSKNHFQKQLDQINA 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Confidence 45677888899999864 66666664 457889887653
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.20 E-value=78 Score=24.24 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 336 IRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
|..|..+-....++++.|++|++.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444555555555555
No 87
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=39.35 E-value=72 Score=30.99 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=35.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
..|+.++.++...|.+|.+++...-.|...||+++...|..
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999988874
No 88
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=39.14 E-value=49 Score=26.00 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccccccccCcchhhHHHHHHHHHHHHHh
Q 015735 352 MLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 391 (401)
Q Consensus 352 ~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~~lGyl 391 (401)
+=++|+..+|.-+-.++.=...-+.-.++++++|.++|++
T Consensus 25 ~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~ 64 (121)
T PF02687_consen 25 ERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGIL 64 (121)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999877666322233334445556666666543
No 89
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=38.28 E-value=23 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhcccC
Q 015735 377 FVCMVALIGLVVGYLSHPQ 395 (401)
Q Consensus 377 fv~~v~llg~~lGyl~~~~ 395 (401)
.|++.|||++.+||++|..
T Consensus 9 ii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRW 27 (62)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4678899999999999853
No 90
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=37.16 E-value=1.1e+02 Score=34.59 Aligned_cols=67 Identities=27% Similarity=0.282 Sum_probs=53.3
Q ss_pred ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 299 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 299 ~l~~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
+.+||-+++...+..-+.||...-..|...+.-+...=-||.|.-+.--+|.+++++|++.-|++.+
T Consensus 315 etKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~ 381 (832)
T KOG2077|consen 315 ETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAK 381 (832)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6688888877777777778877777778887777777778777777777889999999999988864
No 91
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=36.48 E-value=37 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.3
Q ss_pred ccCcchhhHHHHHHHHHHHHHhcccCC
Q 015735 370 QVGFPLLFVCMVALIGLVVGYLSHPQN 396 (401)
Q Consensus 370 ~~Gf~llfv~~v~llg~~lGyl~~~~n 396 (401)
.+|.+.+|+.++.++=.++-|+++|..
T Consensus 50 ~~~~~~~~~~~~w~~~A~~ly~~RP~s 76 (103)
T PF11027_consen 50 DGGNSMFMMMMLWMVLAMALYLLRPSS 76 (103)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCchh
Confidence 356888999999999999999999874
No 92
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.31 E-value=2.8e+02 Score=24.74 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=47.8
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 305 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 305 ~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
...+..+....+..|..-.++..+-.+-++....|+.++.+..+-...||-+++-+|+...
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777777777778888999999999999999999999888876543
No 93
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=36.29 E-value=97 Score=32.10 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
..++.+....+.-+.+|.++.+...+|..+++.|++.|+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556666667777777777777888888888888764
No 94
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=36.11 E-value=2e+02 Score=25.48 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 015735 373 FPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 373 f~llfv~~v~llg~~lGyl~~ 393 (401)
-|+-=|-+-|-+|++||.||-
T Consensus 82 ~PWq~VGvaAaVGlllGlLls 102 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHh
Confidence 688888899999999999985
No 95
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=35.78 E-value=2.8e+02 Score=27.05 Aligned_cols=59 Identities=8% Similarity=0.175 Sum_probs=42.3
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC--------CC----CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT--------SP----KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT--------aP----kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.++..-+.|+. +....+++|.|.++.+..=..... .+ .-|-|-|..--|+||+...+.
T Consensus 24 i~l~~TRvIy~~---~~k~~sv~l~N~~~~p~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lR 94 (234)
T PRK15192 24 VVIGGTRFIYHA---GAPALSVPVSNHSEASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMR 94 (234)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEE
Confidence 456666777876 345679999999988643333211 11 139999999999999999988
No 96
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=35.76 E-value=1.3e+02 Score=24.93 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=23.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 343 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~ 343 (401)
+++|+.++-....++-.|+.++..-+.+++++.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677666666667777777777777777776
No 97
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=35.46 E-value=2.9e+02 Score=26.49 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=42.9
Q ss_pred CceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeCCC-----CceeeeCCceeeCCCCeEEEe
Q 015735 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 5 lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTTaP-----kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
-+.+.|.-+.|... .....++|.|.+++ ++.....+... .-|-|-|..--|+||+.-.|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lR 87 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLR 87 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEE
Confidence 36677888888873 44679999999864 33332222111 129999999999999999888
No 98
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.97 E-value=55 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 336 IRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
..+++-+.+...++.+++++|++.||
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566666667778888888887765
No 99
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=34.90 E-value=1.3e+02 Score=30.57 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=33.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 322 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 322 l~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.-.++-||++-.+.-+.|.-.++.|+.-+++||.+|+.|+||.
T Consensus 25 vlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~ 67 (277)
T PF15030_consen 25 VLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQ 67 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355677777777778888888888888888888888888765
No 100
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.44 E-value=29 Score=29.92 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhccc
Q 015735 379 CMVALIGLVVGYLSHP 394 (401)
Q Consensus 379 ~~v~llg~~lGyl~~~ 394 (401)
.+|||+||++||=+-|
T Consensus 32 AlvGllGilvGeq~~p 47 (93)
T COG4317 32 ALVGLLGILVGEQIVP 47 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999996543
No 101
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.44 E-value=3.3e+02 Score=26.29 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=46.8
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC---C----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT---S----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT---a----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|... .....++|.|.+++++.-.+..- . ...|-|-|..=.|+||+.-.|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vR 94 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLR 94 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEE
Confidence 4566677778764 44679999998888998886655 2 3459999999999999999888
No 102
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=33.43 E-value=69 Score=26.56 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=32.8
Q ss_pred ceeEEEEEEEcCCCCeE-EEEEeeCCC-----------------CceeeeCCc--eeeCCCCeEEEe
Q 015735 21 KQSTCVIQLGNKSDQCV-AFKVKTTSP-----------------KKYCVRPNV--SIIKPKAISDFT 67 (401)
Q Consensus 21 k~~t~~L~L~N~Sd~~V-AFKVKTTaP-----------------kkYcVRPN~--GiI~Pg~s~~I~ 67 (401)
..-...|+|+|.++..| -++|+=+-| ..|.|+|.. +.|.||+++.|-
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~G 79 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFG 79 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEE
Confidence 34456788888887765 244433333 468898764 799999999877
No 103
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.25 E-value=33 Score=28.90 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=15.9
Q ss_pred cchhhHHHHH-HHHHHHHHhccc
Q 015735 373 FPLLFVCMVA-LIGLVVGYLSHP 394 (401)
Q Consensus 373 f~llfv~~v~-llg~~lGyl~~~ 394 (401)
|-+.|++++. ++|+.+||++++
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 4566776654 568999999874
No 104
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=33.14 E-value=53 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHH
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHTI 336 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~I 336 (401)
.+|+.+++.||+++|+|.+.+.+-|
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988876543
No 105
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.12 E-value=1.9e+02 Score=21.77 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 335 TIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 335 ~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
--..|+.+-++-.+|++.|+.|+..|+.+.
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888899999999999988664
No 106
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=33.06 E-value=88 Score=27.22 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHhc
Q 015735 377 FVCMVALIGLVVGYLS 392 (401)
Q Consensus 377 fv~~v~llg~~lGyl~ 392 (401)
+.-++||+|+++|.+.
T Consensus 64 ~aP~lGLlGTv~Gmi~ 79 (139)
T PF01618_consen 64 IAPLLGLLGTVIGMIE 79 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457899999999753
No 107
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.80 E-value=1.1e+02 Score=28.75 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=34.1
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.-...+.|+.++..++.++.+....|..+..+|... .+|..+-+||+.|+.+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~ 119 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKEL 119 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666665555444 67777777777777654
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.75 E-value=2.5e+02 Score=24.54 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 333 EHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 333 ~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+.-..|.+.+.+-..++..|+.|+..+.++.
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667778889999998887654
No 109
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.14 E-value=50 Score=27.41 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhcccCC
Q 015735 376 LFVCMVALIGLVVGYLSHPQN 396 (401)
Q Consensus 376 lfv~~v~llg~~lGyl~~~~n 396 (401)
+|+++||.+.+++-|..|...
T Consensus 12 vf~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 12 VFMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 599999999999999988543
No 110
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.90 E-value=1.3e+02 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 327 SQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 327 ~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
..+...+.-+..+.++.....+..+++++|+..||++
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555556666666666666654
No 111
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.75 E-value=1.2e+02 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=36.3
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
|..++..-+.-...++.++...+..|..+.+...++.++|++||..|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444555666777888888888888888888888888888887765
No 112
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=31.47 E-value=2.6e+02 Score=25.39 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=35.3
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 015735 305 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA 346 (401)
Q Consensus 305 ~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a 346 (401)
+..+..+.+|+++|+..|...+.+..+|...|..+++--+.+
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~ 69 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPR 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 345677899999999999999999999999998888764444
No 113
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.45 E-value=2.1e+02 Score=25.45 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++.|.+.+.-++..+.-...-|.+|..+|+.+.+|.=+|-.|.+.++.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666777777777666666666666655543
No 114
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.26 E-value=4.6e+02 Score=26.51 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------------
Q 015735 305 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN------------------- 365 (401)
Q Consensus 305 ~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~------------------- 365 (401)
......+..+++.++.+++.++.++++.+.-+.++... ..+...|++|++.-|..-+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~~~~~ 378 (444)
T TIGR03017 303 KKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQSNQTD 378 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q ss_pred ---------ccccccCcchhhHHHHHHHHHHHHHhc
Q 015735 366 ---------LRRVQVGFPLLFVCMVALIGLVVGYLS 392 (401)
Q Consensus 366 ---------~~~~~~Gf~llfv~~v~llg~~lGyl~ 392 (401)
+.....==..+++++.+++|+++|..+
T Consensus 379 ~~Vi~~a~~P~~P~~P~~~~~l~~~~~~Gl~lg~~~ 414 (444)
T TIGR03017 379 ISILNPAVPPLEPSSPRLLLNLVLSIFLGMLLGIGF 414 (444)
T ss_pred eEeeCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
No 115
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=31.12 E-value=1.9e+02 Score=28.76 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.0
Q ss_pred CcchhhH
Q 015735 372 GFPLLFV 378 (401)
Q Consensus 372 Gf~llfv 378 (401)
||-.+|+
T Consensus 153 gi~aml~ 159 (230)
T PF03904_consen 153 GIGAMLF 159 (230)
T ss_pred hHHHHHH
Confidence 5444333
No 116
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.03 E-value=1.4e+02 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
..+++|...|-.+|.-|.=|-.---.+|..|.+|.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887777766544333333444444433
No 117
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.87 E-value=2e+02 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=7.9
Q ss_pred hHHHHHHhhhhhhhhhHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAE 333 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~ 333 (401)
.+++.+.++..+..++....
T Consensus 85 ~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 85 RIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 118
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.14 E-value=65 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=20.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHH
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHT 335 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~ 335 (401)
.+|+.++..||+++|+|.+-..+-
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E 34 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGE 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999998876653
No 119
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.87 E-value=2.9e+02 Score=22.06 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR 348 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~ 348 (401)
..++..|++.|+.|.+.+.....-...-+....+|-..|-+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988877777666666655555444433
No 120
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.80 E-value=1.6e+02 Score=31.95 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=3.5
Q ss_pred EEEEEcC
Q 015735 26 VIQLGNK 32 (401)
Q Consensus 26 ~L~L~N~ 32 (401)
.|+|.|-
T Consensus 5 ~l~l~nf 11 (650)
T TIGR03185 5 QLTLENF 11 (650)
T ss_pred EEEEece
Confidence 3455554
No 121
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=29.77 E-value=2.2e+02 Score=27.78 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHHHHHHHHHHH
Q 015735 330 REAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGY 390 (401)
Q Consensus 330 ~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~~lGy 390 (401)
.-....+.++++.+. ++.++.++|++.--++...-+..+=|+=+|=.+++.++++.|-
T Consensus 18 ~~~~~~~~~~~~~~~---~~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 18 KSKKEQIERASEAQE---KKAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 333455666666655 5566666666654443322212233777776666666666665
No 122
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.62 E-value=1.9e+02 Score=29.61 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcc
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFP 374 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~ 374 (401)
.++..+...+.++..|--.-|..|+++|+......+.|.++..-++++.+-.+ .+|-|
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~ 108 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCC
Confidence 34444444555555555556667777777766667777777777777765442 34433
No 123
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.55 E-value=1.6e+02 Score=25.36 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
..+..+++++.++..-+.+|+.+-....++..+|++|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555555555555555555555553
No 124
>smart00637 CBD_II CBD_II domain.
Probab=29.36 E-value=1.5e+02 Score=23.88 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=28.6
Q ss_pred EEEEEEEcCCCCeE-----EEEEee-------------CCCCceeeeCCc--eeeCCCCeEEEe
Q 015735 24 TCVIQLGNKSDQCV-----AFKVKT-------------TSPKKYCVRPNV--SIIKPKAISDFT 67 (401)
Q Consensus 24 t~~L~L~N~Sd~~V-----AFKVKT-------------TaPkkYcVRPN~--GiI~Pg~s~~I~ 67 (401)
...++|+|+++.++ .|.+-- ..-..|.|+|.. +.|.||+++.|-
T Consensus 9 ~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~g 72 (92)
T smart00637 9 TANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFG 72 (92)
T ss_pred EEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEE
Confidence 46778888766533 333311 123369999643 899999998876
No 125
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.11 E-value=2.8e+02 Score=26.21 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=44.5
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.++++.-|..|..+.+++.+.+.-|..|.-|-..-.|...++++|-+.|.++-.
T Consensus 78 L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 78 LKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888888888999999999999999999999999998887654
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.09 E-value=2.6e+02 Score=30.94 Aligned_cols=49 Identities=29% Similarity=0.489 Sum_probs=26.6
Q ss_pred hhHHHHHHhhhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 313 KDFEELKLKLNVMDSQLREAEH-------TIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~-------~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+..++|+..|..+..++.+.+. .+.++.+|......++..|++|+.+.+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444 445555555555566666666665444
No 127
>PHA00727 hypothetical protein
Probab=29.05 E-value=1.5e+02 Score=29.51 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=39.0
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEH--TIRKLMEARK--LATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~--~I~kL~Ee~~--~a~~e~~~Lq~El~~lrr~~ 364 (401)
+.+-++.++|||.+-++.+.|...... -+-|..|.|. ...||-++|+.||+.-+++-
T Consensus 13 elrkaqsleelkqkyee~qkqi~dgk~lkrlykvyekrefelk~~qf~qlkael~kkkkk~ 73 (278)
T PHA00727 13 ELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKF 73 (278)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788999888888888776543 2334455554 45688999999998655543
No 128
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.71 E-value=52 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=14.2
Q ss_pred cchhh-HHHHHHHHHHHHHhcc
Q 015735 373 FPLLF-VCMVALIGLVVGYLSH 393 (401)
Q Consensus 373 f~llf-v~~v~llg~~lGyl~~ 393 (401)
.|+.. +++..++|+++|+++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 45544 4555678999998864
No 129
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.60 E-value=2.4e+02 Score=28.73 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
.++++...+..++.+.+|-..-+.++++.......|.+.||.+|.
T Consensus 120 ~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 120 KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444555555555555555555543
No 130
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=28.30 E-value=3.7e+02 Score=23.78 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=39.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
++..+..|+....++..-.-+-.+--..|+++=+.--+..++++||++.|.-+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~Fr 55 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFR 55 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665666667789999888889999999999987643
No 131
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=28.28 E-value=2.1e+02 Score=30.82 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccccccccCcchhhHH
Q 015735 307 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVC 379 (401)
Q Consensus 307 ~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~-------~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~ 379 (401)
++.++.++-+++-.||+. -+.|+-.-++...||- ...+.+-|+.-|. ++.|. ++.|||...++
T Consensus 201 lL~~l~~~W~~~s~KL~k---~l~~Tl~sfr~~Nee~~~k~~~~~~~lk~~dk~Ck~--il~K~-----~~~~c~w~~l~ 270 (469)
T PF10151_consen 201 LLKHLDDEWKESSKKLSK---SLKETLKSFRLKNEELLKKGKAKDESLKECDKACKV--ILGKM-----SGSSCPWTRLL 270 (469)
T ss_pred HHHHHHHhHHhhhHHHHH---HHHHHHHHHHHhHHHHHhccccchHHHHHHHHHHHH--HHHhh-----cCCCCchHHHH
Confidence 456677777777777753 5777766666666654 1233444555554 34432 12467655443
Q ss_pred HHHHHHHHHHHhcccCCc
Q 015735 380 MVALIGLVVGYLSHPQNR 397 (401)
Q Consensus 380 ~v~llg~~lGyl~~~~n~ 397 (401)
+ -++.++.|++.+-.++
T Consensus 271 l-lllvliaG~l~yDv~~ 287 (469)
T PF10151_consen 271 L-LLLVLIAGFLAYDVRS 287 (469)
T ss_pred H-HHHHHHHHHHHHhhhc
Confidence 3 3334444666665543
No 132
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=28.27 E-value=4.7e+02 Score=25.45 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=42.0
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeCC-----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTTa-----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+.+.-+.|.. +....+++|.|.+++ +..-...+.. ..-|-|-|..--|+||+.-.+.
T Consensus 29 i~l~~TRvIy~~---~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lR 93 (228)
T PRK15188 29 IALGATRVIYPQ---GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILR 93 (228)
T ss_pred EEECcEEEEEcC---CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 556777788876 344679999999865 3332222211 1249999999999999999988
No 133
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.27 E-value=1.8e+02 Score=30.14 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.8
Q ss_pred EEEEcC
Q 015735 27 IQLGNK 32 (401)
Q Consensus 27 L~L~N~ 32 (401)
|+|.|-
T Consensus 7 l~l~nf 12 (562)
T PHA02562 7 IRYKNI 12 (562)
T ss_pred EEEEcc
Confidence 444444
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.13 E-value=2.6e+02 Score=25.06 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=24.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEH--TIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~--~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.....+++.....+++.+....+ +...|.++-..-.+|+..|+..|+.||.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433322 1233344444444566666666666665
No 135
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.00 E-value=2.2e+02 Score=29.65 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 334 HTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 334 ~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
..+.+|.+.+....++..+|+.++..|+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666655543
No 136
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=27.97 E-value=2.3e+02 Score=30.25 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=32.8
Q ss_pred CceeEEEEEEEcCCCCeEEEEEeeC------CC-CceeeeCCce--------------eeCCCCeEEEee
Q 015735 20 KKQSTCVIQLGNKSDQCVAFKVKTT------SP-KKYCVRPNVS--------------IIKPKAISDFTG 68 (401)
Q Consensus 20 ~k~~t~~L~L~N~Sd~~VAFKVKTT------aP-kkYcVRPN~G--------------iI~Pg~s~~I~~ 68 (401)
.+..+-.++++|+++++|-.+==|| +| ..|...|+.. =|.||+|-+|.+
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v 350 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKM 350 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEE
Confidence 5677788999999999887663333 33 3333333332 289999999983
No 137
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.78 E-value=3.3e+02 Score=25.01 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
.+..|.++-|.-+..++.++.+..+-+..|..|-.+-..+++.|-++|...+.
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555555555555555555555554443
No 138
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.72 E-value=3.7e+02 Score=22.59 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+..++.....=|..-+.+...|...+.+=...+..-..+..+|+.+|+.|+....
T Consensus 43 ~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 43 ELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566667777777777776666777777888888888888886653
No 139
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=2e+02 Score=32.67 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=43.8
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
+.+-+..|+.+++..+.++.+...-+..+..|..--.+.+..|+.|++-||++-.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777888888778888888888888888999999999998753
No 140
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.45 E-value=1.3e+02 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=26.4
Q ss_pred ceeEEEEEEEcCCCCeE-EEEEeeCCCCcee--eeCCc-eeeCCCCeEEEe
Q 015735 21 KQSTCVIQLGNKSDQCV-AFKVKTTSPKKYC--VRPNV-SIIKPKAISDFT 67 (401)
Q Consensus 21 k~~t~~L~L~N~Sd~~V-AFKVKTTaPkkYc--VRPN~-GiI~Pg~s~~I~ 67 (401)
...+-.++++|..+..+ ..++.-..|.-+. +.|.. +-|.||++..++
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~ 55 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVT 55 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEE
Confidence 45667899999976542 3455545587766 55554 379999999988
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.36 E-value=3.5e+02 Score=26.06 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 015735 309 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR-------EKDMLKHELEVLRR 362 (401)
Q Consensus 309 ~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~-------e~~~Lq~El~~lrr 362 (401)
.++..++++++.|+.........++..|.+|+.+-..++. +.+.|+.||+++++
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666665666666667777666555444 34556666666664
No 142
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=27.19 E-value=1.4e+02 Score=21.61 Aligned_cols=26 Identities=38% Similarity=0.658 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 337 RKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 337 ~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
.||.-|+..--+.+..|+|-|+.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666778889999999985
No 143
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.14 E-value=98 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 335 TIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 335 ~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+|..|+||...--++.+||..||..++|.
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36778888888888889998898888876
No 144
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=26.77 E-value=3.7e+02 Score=22.58 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=30.1
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 367 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~ 367 (401)
.++..++++......-|.|=..+-..+-+..+.|..|+..|+...++.
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334444444444444455555555566677888999999998876543
No 145
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.60 E-value=1.9e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 329 LREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 329 ~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
.+....-|.++..+......|++.|+.|...|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455566666666666677777777776654
No 146
>PF15456 Uds1: Up-regulated During Septation
Probab=26.51 E-value=3.9e+02 Score=23.89 Aligned_cols=54 Identities=30% Similarity=0.429 Sum_probs=40.8
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKL------------------MEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL------------------~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+..=++-++.|++ ++.|+++|-..+.+| .||.....+-.+.+.+||..+.++.
T Consensus 33 ~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 33 SLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555666777776 889999998888888 4666677778888889988877654
No 147
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=26.50 E-value=52 Score=29.84 Aligned_cols=21 Identities=57% Similarity=0.936 Sum_probs=16.0
Q ss_pred ccCcchhhHHHHHHHHHHHHHh
Q 015735 370 QVGFPLLFVCMVALIGLVVGYL 391 (401)
Q Consensus 370 ~~Gf~llfv~~v~llg~~lGyl 391 (401)
|+-| |+|+-+|||||.+-|.|
T Consensus 67 ~v~f-LvfmTlVaLIgTMCgIL 87 (130)
T PF02960_consen 67 QVHF-LVFMTLVALIGTMCGIL 87 (130)
T ss_pred Eeee-eHHHHHHHHHHHHHHHH
Confidence 3433 67888999999988765
No 148
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.50 E-value=1.8e+02 Score=31.60 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=21.9
Q ss_pred HhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 320 LKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~-------Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++|.+.+.+..|.+.-|.+|+ -.+....++.++|+.|+..|+.+.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443 233333444556667777776653
No 149
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.12 E-value=2.6e+02 Score=28.11 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=50.4
Q ss_pred CchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHH
Q 015735 302 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMV 381 (401)
Q Consensus 302 ~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v 381 (401)
++-++....-.+..+.++..|++++++. ++-+.+|..+=...-...++.+.||-+|+.-. +.+||.--|.+.
T Consensus 52 ~~i~~le~~~~~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk-----D~EYPvK~vqIa 123 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK-----DHEYPVKAVQIA 123 (258)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHH
Confidence 3344444455566666777666666553 45678888887777888888888888888642 357888777766
Q ss_pred HH
Q 015735 382 AL 383 (401)
Q Consensus 382 ~l 383 (401)
.|
T Consensus 124 ~L 125 (258)
T PF15397_consen 124 NL 125 (258)
T ss_pred HH
Confidence 55
No 150
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=3e+02 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 335 TIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 335 ~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++.+=.+++.-..|+..-+|+|||+||+..
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~ 109 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNL 109 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344456677888888999888754
No 151
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=25.95 E-value=98 Score=27.23 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=26.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Q 015735 324 VMDSQLREAEHTIRKLMEARKLAT-REKDMLKHELEVLRRKSNL 366 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~-~e~~~Lq~El~~lrr~~~~ 366 (401)
.+-..+.-.-.-|+.|.++.+... .+.+.+++|++.|||+...
T Consensus 18 ~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~l 61 (130)
T PF11026_consen 18 VLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARL 61 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHH
Confidence 344455555667777777766432 2334558888888887654
No 152
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.73 E-value=72 Score=30.85 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=15.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHH
Q 015735 318 LKLKLNVMDSQLREAEHTIRK 338 (401)
Q Consensus 318 lk~kl~~~~~k~~Ea~~~I~k 338 (401)
|+..|.+||++++.++....+
T Consensus 101 LkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777888888877665543
No 153
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.57 E-value=2.7e+02 Score=27.92 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=21.2
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE 349 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e 349 (401)
....++++++.++.+++.++.+-...|..+++++.....+
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444333
No 154
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=25.34 E-value=1.1e+02 Score=28.89 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=30.1
Q ss_pred eeEEeccc-CceeEEEEEEEcC---CCCeEEEEEee------CCCCceeeeCCc
Q 015735 12 ELKFTFEV-KKQSTCVIQLGNK---SDQCVAFKVKT------TSPKKYCVRPNV 55 (401)
Q Consensus 12 EL~F~~p~-~k~~t~~L~L~N~---Sd~~VAFKVKT------TaPkkYcVRPN~ 55 (401)
-|.|.-.. .+-..|.|+|.-- ....|+|++|- ..|..||+|||-
T Consensus 101 ~Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 101 LLRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred eEEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 35665432 3466799998753 34469999983 346779999984
No 155
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.31 E-value=2.6e+02 Score=26.38 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 325 MDSQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 325 ~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
+.+++++|......|+++-...+++-..|++||+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888888888888888876
No 156
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=25.30 E-value=6.1e+02 Score=24.81 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=42.6
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeC--C--C-CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S--P-KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTT--a--P-kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+++.-+.|.. +....+++|.|.++. ++-=..... . + .-|-|-|..=-|+||+.-.|.
T Consensus 18 v~l~~TRvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lR 82 (239)
T PRK15254 18 VNVDRTRIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVR 82 (239)
T ss_pred EEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEE
Confidence 556677788876 345679999999864 544333321 1 1 249999999999999999988
No 157
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.20 E-value=3.6e+02 Score=21.63 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhh
Q 015735 352 MLKHELEVLRRK 363 (401)
Q Consensus 352 ~Lq~El~~lrr~ 363 (401)
.|+++=..+++.
T Consensus 42 ~L~~~a~~F~k~ 53 (89)
T PF00957_consen 42 ELSDNAKQFKKN 53 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 344444444433
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.02 E-value=3.2e+02 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 344 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~ 344 (401)
.+..+++..+.++.+++.++.+-...|...++++.
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444443
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.82 E-value=2.5e+02 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 332 AEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 332 a~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-+.+|..+.+||+...+..+++..|+.-|+...
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444333333
No 160
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.60 E-value=1.9e+02 Score=31.89 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=35.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.-..|+.+++++.-+..-|.+|.+|.+...+|+..|+.+|..+|.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3345667777777777888888888888888888888888877775
No 161
>smart00338 BRLZ basic region leucin zipper.
Probab=24.38 E-value=2.4e+02 Score=21.60 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 331 EAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 331 Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+.+.-+..|+.+...-..+.+.|++|+..|+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555554
No 162
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.27 E-value=2.4e+02 Score=28.71 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 015735 345 LATREKDMLKHELEVLRRK 363 (401)
Q Consensus 345 ~a~~e~~~Lq~El~~lrr~ 363 (401)
.-.-++++|.+||+++|..
T Consensus 122 ~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 122 SLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 3345667777888887754
No 163
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.10 E-value=1.6e+02 Score=27.17 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++..++..++.++.+-...|..|+.++..-.++...|..||...++
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 164
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=1.8e+02 Score=33.94 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 325 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 325 ~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++.+|+.-+.+-+.=.|||+..+.++..-++|||..|+
T Consensus 373 lekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 373 LEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333345555556555555666655543
No 165
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=23.90 E-value=50 Score=31.62 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+|.++-.++..++.++....-.-..--++.-...+++.+|++|+..||++.
T Consensus 215 ~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l 265 (268)
T PF13234_consen 215 EFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQL 265 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444221111223466677788889999999999875
No 166
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.89 E-value=1.9e+02 Score=24.71 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 332 AEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 332 a~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+.-|.+|..+-.....|++-|++-++..|++.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 344567777777777788888998888888764
No 167
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.61 E-value=2.4e+02 Score=23.92 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 325 MDSQLREAEHTIR-------KLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 325 ~~~k~~Ea~~~I~-------kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++.|...|-.+|. .|+|+.++-++|-+.+|+--+-|++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 3445555544443 3344444444444444444444443
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.49 E-value=1.9e+02 Score=31.73 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhh
Q 015735 349 EKDMLKHELEVLRRK 363 (401)
Q Consensus 349 e~~~Lq~El~~lrr~ 363 (401)
|++.+++|||.||-.
T Consensus 303 e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 303 ENETSRKELEQLRVA 317 (575)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566677888888854
No 169
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.40 E-value=2.7e+02 Score=28.54 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=40.6
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..++.+.+++.|+..|-. .+..++|.|+.+.=....++.+.|+++++-|+...
T Consensus 52 ~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888877754 46778888888887777777788888888777655
No 170
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.37 E-value=1.9e+02 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 328 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 328 k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++.+...-...|+..=.....++..++.|+..+++..
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444455555555555555433
No 171
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=23.07 E-value=4.1e+02 Score=28.32 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=35.7
Q ss_pred eEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCc----------------------eeeeCCceeeCCCCeE
Q 015735 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKK----------------------YCVRPNVSIIKPKAIS 64 (401)
Q Consensus 7 ~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkk----------------------YcVRPN~GiI~Pg~s~ 64 (401)
.++-..-.|.-| .+..+-.++++|+++++|-..==+|+.=+ -.|.||. =|.||++.
T Consensus 250 ~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI~PGETr 327 (381)
T PF04744_consen 250 KVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PIAPGETR 327 (381)
T ss_dssp EEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-EE
T ss_pred EEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-CcCCCceE
Confidence 333344455544 67888999999999999877633333222 2345554 48999999
Q ss_pred EEeec
Q 015735 65 DFTGI 69 (401)
Q Consensus 65 ~I~~~ 69 (401)
+++++
T Consensus 328 tl~V~ 332 (381)
T PF04744_consen 328 TLTVE 332 (381)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99943
No 172
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=23.07 E-value=4.3e+02 Score=21.71 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=32.0
Q ss_pred CceeEEEEEEEcCCCCeEE-EEEeeCCCCceee--eCC-ceeeCCCCeEEEe
Q 015735 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCV--RPN-VSIIKPKAISDFT 67 (401)
Q Consensus 20 ~k~~t~~L~L~N~Sd~~VA-FKVKTTaPkkYcV--RPN-~GiI~Pg~s~~I~ 67 (401)
..+..-.++.+|++...+. |.+.-..|+.|.+ .|. ...|.|+..+.-.
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~ 74 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQV 74 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEE
Confidence 5677888999999998775 7777666665554 455 4588898777655
No 173
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=23.00 E-value=2.9e+02 Score=22.43 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=30.4
Q ss_pred CceeEEEEEEEcCCCCeEE-----EEEeeCCCCceeeeC---------CceeeCCCCeEEEeec
Q 015735 20 KKQSTCVIQLGNKSDQCVA-----FKVKTTSPKKYCVRP---------NVSIIKPKAISDFTGI 69 (401)
Q Consensus 20 ~k~~t~~L~L~N~Sd~~VA-----FKVKTTaPkkYcVRP---------N~GiI~Pg~s~~I~~~ 69 (401)
.+-..-.++++|.+++.+. |++.+..-+.|.... ..+-|.||+++...+.
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~ 98 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLV 98 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEE
Confidence 4456678999999998775 788877767776443 4589999999987743
No 174
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.98 E-value=1.6e+02 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=18.9
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLME 341 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~E 341 (401)
.+...+..++.++.++.+|...|..|..
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777777777777777766
No 175
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=22.89 E-value=24 Score=30.00 Aligned_cols=64 Identities=9% Similarity=0.243 Sum_probs=1.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchhhHHHHHHHHHHHHHhcc
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~llfv~~v~llg~~lGyl~~ 393 (401)
.++..+......+..+..+-+.....-+..++.++-.+++ -.-|+++.++++.+++++=-|++|
T Consensus 116 ~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~------i~~~si~~~~vli~~~~~Qv~~lk 179 (183)
T PF01105_consen 116 PLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSR------IMWWSIIQIVVLILVSVWQVYYLK 179 (183)
T ss_dssp --------------------------------------------------------------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe------EEhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333333333322 246777777777777766556555
No 176
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=22.79 E-value=55 Score=30.76 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHhcccCCcC
Q 015735 374 PLLFVCMVALIGLVVGYLSHPQNRL 398 (401)
Q Consensus 374 ~llfv~~v~llg~~lGyl~~~~n~~ 398 (401)
+++=++.|||+|.+-+|+..+.+++
T Consensus 119 GIvsav~valvGAvsSyiaYqkKKl 143 (169)
T PF12301_consen 119 GIVSAVVVALVGAVSSYIAYQKKKL 143 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567789999999999999877775
No 177
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.47 E-value=2.6e+02 Score=27.56 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=26.0
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
+-++.++...+|+..+.+-.+-..-...+..|=+....++++||.+++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555566666665544
No 178
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.46 E-value=3.6e+02 Score=28.04 Aligned_cols=53 Identities=28% Similarity=0.430 Sum_probs=29.1
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA-------------RKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee-------------~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+.+.+++|+..+..++.++.+.+..|.+|... .....+...+|.+++..|+.+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 397 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEE 397 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666542 223344445555555555544
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.91 E-value=3.4e+02 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 336 IRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
+..|.-|-..+.++...|..||.-|
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444444444444444433
No 180
>PRK09039 hypothetical protein; Validated
Probab=21.89 E-value=2.8e+02 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=23.1
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 359 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~ 359 (401)
.+++-|+..+..++.|+...++.|.-+.+..+.+..+.+.|+++|+.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444444444555554443
No 181
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.76 E-value=72 Score=24.52 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=17.2
Q ss_pred Ccc-hhhHHHHHHHHHHHHHhcc
Q 015735 372 GFP-LLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 372 Gf~-llfv~~v~llg~~lGyl~~ 393 (401)
||. .+|+++.+.+|..+|+.+.
T Consensus 28 GF~~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 28 GFWKTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 543 6788889999999998753
No 182
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.43 E-value=4.8e+02 Score=25.98 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015735 336 IRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
+.++.++.....+++..|..+|
T Consensus 151 ~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 151 VAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555555555544
No 183
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.26 E-value=3.8e+02 Score=20.50 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 329 LREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 329 ~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.+-+..+..|..+...-..+.+.|++|+.-|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555566666666666666666666666654
No 184
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=8.2e+02 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=14.7
Q ss_pred cCcchhhHHHHHHHHHHHHHhc
Q 015735 371 VGFPLLFVCMVALIGLVVGYLS 392 (401)
Q Consensus 371 ~Gf~llfv~~v~llg~~lGyl~ 392 (401)
-|--.+.+++||++|++|-.++
T Consensus 213 ~~~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 213 CSQWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred ccchhHHHHHHHHHHHHHHHhc
Confidence 3445566678888888876543
No 185
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.06 E-value=3.6e+02 Score=20.60 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=16.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 356 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~E 356 (401)
..|+.+..+-......|.++-....++.+.|+.|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444445555555555555555544
No 186
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=21.06 E-value=2.5e+02 Score=29.42 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhccccccccCcchh
Q 015735 319 KLKLNVMDSQLREAEHTIRKLMEARK--------------LATREKDMLKHELEVLRRKSNLRRVQVGFPLL 376 (401)
Q Consensus 319 k~kl~~~~~k~~Ea~~~I~kL~Ee~~--------------~a~~e~~~Lq~El~~lrr~~~~~~~~~Gf~ll 376 (401)
++.|..|-.+.++|...++.++|.-+ .-..+..+++||||. ++. + ...|-||.
T Consensus 272 NnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe---~G~-~-msDGaplv 338 (384)
T KOG0972|consen 272 NNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE---QGA-K-MSDGAPLV 338 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH---hcc-c-ccCCchHH
Confidence 34444555556666666665555433 334566677777763 332 1 33688875
No 187
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=1.6e+02 Score=28.57 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=32.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.||--++||+++|.| -..++.+..+.+.++|++||-+.+
T Consensus 121 MlEY~leEAeaLLkk---nl~sa~k~l~~~~~DldfLrdQvT 159 (187)
T KOG3313|consen 121 MLEYDLEEAEALLKK---NLTSAVKSLDVLEEDLDFLRDQVT 159 (187)
T ss_pred EEEecHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhce
Confidence 356678999988654 567889999999999999998765
No 188
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.02 E-value=3.9e+02 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 015735 326 DSQLREAEHTIRKLMEARKL 345 (401)
Q Consensus 326 ~~k~~Ea~~~I~kL~Ee~~~ 345 (401)
+.++..+.+.|..|.+|.+.
T Consensus 33 E~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 189
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.89 E-value=2.1e+02 Score=31.21 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 015735 345 LATREKDMLKHELEVLRRK 363 (401)
Q Consensus 345 ~a~~e~~~Lq~El~~lrr~ 363 (401)
.--.|++.|+.+|+-++.+
T Consensus 108 eLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 108 KLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 3345677888888766654
No 190
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.53 E-value=3.1e+02 Score=26.98 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccccccccCcch-hhHHHHHHHHHHHHHhc
Q 015735 328 QLREAEHTIRKLMEARKLATREKDMLKH---ELEVLRRKSNLRRVQVGFPL-LFVCMVALIGLVVGYLS 392 (401)
Q Consensus 328 k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~---El~~lrr~~~~~~~~~Gf~l-lfv~~v~llg~~lGyl~ 392 (401)
|++-++.-++||.+--.+-..+---||+ ||.-+-++.|.| . .-||+ .|+|++|+-|.=+-||=
T Consensus 135 klep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsr-v-~~fSi~Sl~v~~~va~~QvlyLK 201 (210)
T KOG1691|consen 135 KLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSR-V-AWFSILSLVVLLSVAGWQVLYLK 201 (210)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444444444444444 454444445444 2 23664 36777888887777763
No 191
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=20.49 E-value=7.8e+02 Score=23.75 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=41.8
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC--eEEEEEeeCC----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTS----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~--~VAFKVKTTa----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.+++.-+.|... .....++|.|.+++ ++.+.--.+. ..-|-|-|..=-|+||+.-.|.
T Consensus 27 i~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lR 91 (229)
T PRK15195 27 IALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLR 91 (229)
T ss_pred EEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 5677778888763 33489999999865 4433211111 1249999999999999999988
No 192
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=20.33 E-value=3.3e+02 Score=30.25 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred cccccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 015735 296 DASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK--------------LATREKDMLKHELEVLR 361 (401)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~--------------~a~~e~~~Lq~El~~lr 361 (401)
++..|+-.+..++..+.|||+.-..|-...+..+.+++.++.|-.-++. ..+++++.++++++.+-
T Consensus 18 ~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E 97 (604)
T KOG3564|consen 18 DIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLE 97 (604)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred hhc
Q 015735 362 RKS 364 (401)
Q Consensus 362 r~~ 364 (401)
.+.
T Consensus 98 ~~i 100 (604)
T KOG3564|consen 98 TQI 100 (604)
T ss_pred HHH
No 193
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=20.22 E-value=88 Score=30.62 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=11.3
Q ss_pred HHHHHHHHhhcccc
Q 015735 354 KHELEVLRRKSNLR 367 (401)
Q Consensus 354 q~El~~lrr~~~~~ 367 (401)
++|+-.||.-+..+
T Consensus 296 ~rEigilralG~~~ 309 (411)
T TIGR02212 296 QGDIAILRTLGATP 309 (411)
T ss_pred hhHHHHHHHcCCCh
Confidence 57999999887655
No 194
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.15 E-value=2e+02 Score=26.60 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 015735 348 REKDMLKHELEVL 360 (401)
Q Consensus 348 ~e~~~Lq~El~~l 360 (401)
+|...|++.|..+
T Consensus 96 kEI~~Lr~kL~e~ 108 (143)
T PRK11546 96 KEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 195
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=20.12 E-value=65 Score=35.31 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 015735 373 FPLLFVCMVALIGLVVGYLSH 393 (401)
Q Consensus 373 f~llfv~~v~llg~~lGyl~~ 393 (401)
=+++||||++|+|++|-|...
T Consensus 193 s~y~~v~Y~lllGv~LPy~v~ 213 (610)
T COG5407 193 SMYAFVMYSLLLGVFLPYWVY 213 (610)
T ss_pred CceeHHHHHHHHHHHHHHHHH
Confidence 368999999999999999864
No 196
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=20.02 E-value=3.1e+02 Score=22.48 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=33.8
Q ss_pred ccCceeEEEEEEEcCCCCe--------EEEEEeeCCCCc----eeeeCCceeeCCCCeEEEe
Q 015735 18 EVKKQSTCVIQLGNKSDQC--------VAFKVKTTSPKK----YCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 18 p~~k~~t~~L~L~N~Sd~~--------VAFKVKTTaPkk----YcVRPN~GiI~Pg~s~~I~ 67 (401)
..++.....++++|+++.. -++-|- -++. ...+-..+-|.||++..+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~--ytG~~~~~~~~~~~~~~l~p~~~~~~~ 71 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVE--YTGLTRDQFKKEKFEVTLKPGETKSVE 71 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEE--CTTTEEEEEEEEEEEEEE-TTEEEEEE
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEE--ECCcccccEeEEEcceeeCCCCEEEEE
Confidence 3577889999999999887 444443 3343 4577888999999999988
No 197
>PRK06285 chorismate mutase; Provisional
Probab=20.02 E-value=5.2e+02 Score=21.52 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=37.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhccccccccCcchhhH
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE--------------LEVLRRKSNLRRVQVGFPLLFV 378 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~E--------------l~~lrr~~~~~~~~~Gf~llfv 378 (401)
.+|.++..++.+-..-|.+|=++|....++.-.+|.+ ++.++... .+.|++--|+
T Consensus 7 ~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~~v~dp~RE~~vl~~~~~~a----~~~~l~~~~i 75 (96)
T PRK06285 7 KRLNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKSLGMPIFDPEREDYIHEKIRKLC----EEHNIDENIG 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh----hhCCCCHHHH
Confidence 3455566667777777888888888888888888776 34444332 3478876664
Done!