Query 015735
Match_columns 401
No_of_seqs 206 out of 580
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.4E-35 4.9E-40 256.6 17.4 125 3-175 12-137 (147)
2 1wic_A Hypothetical protein ri 100.0 7.2E-36 2.5E-40 261.2 13.6 131 3-182 16-149 (152)
3 1z9l_A Vesicle-associated memb 100.0 6.3E-35 2.2E-39 245.9 16.6 118 4-169 9-127 (128)
4 1msp_A MSP, major sperm protei 100.0 3.1E-32 1E-36 231.2 15.2 119 3-169 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 5.8E-28 2E-32 202.4 14.2 104 6-167 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 4.3E-27 1.5E-31 200.3 15.3 106 4-167 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.0 4.9E-05 1.7E-09 62.6 10.5 62 4-68 24-86 (122)
8 3qbt_B Inositol polyphosphate 97.3 0.0016 5.3E-08 55.9 9.8 69 4-72 25-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.2 0.0013 4.4E-08 52.3 8.4 69 4-72 8-80 (112)
10 3qis_A Inositol polyphosphate 96.3 0.014 4.8E-07 56.7 9.6 69 4-72 28-103 (366)
11 2qsv_A Uncharacterized protein 90.4 1.1 3.6E-05 40.2 8.6 63 6-69 3-66 (220)
12 3efg_A Protein SLYX homolog; x 86.6 1.9 6.6E-05 34.3 6.8 51 317-367 11-61 (78)
13 2qsv_A Uncharacterized protein 85.9 3 0.0001 37.3 8.6 61 5-68 119-181 (220)
14 3i00_A HIP-I, huntingtin-inter 79.4 8.6 0.00029 32.9 8.4 59 303-364 12-84 (120)
15 3hnw_A Uncharacterized protein 77.7 6.2 0.00021 34.2 7.1 34 311-344 66-99 (138)
16 3hnw_A Uncharacterized protein 76.4 9.6 0.00033 33.0 7.9 42 317-358 93-134 (138)
17 1nlw_A MAD protein, MAX dimeri 70.1 9 0.00031 30.3 5.8 37 328-364 41-77 (80)
18 2eqb_B RAB guanine nucleotide 68.6 12 0.00042 31.2 6.5 47 315-361 7-60 (97)
19 3m9b_A Proteasome-associated A 67.9 4.8 0.00017 38.5 4.4 39 324-362 58-96 (251)
20 2oqq_A Transcription factor HY 66.1 10 0.00034 27.7 4.7 35 323-357 6-40 (42)
21 3q48_A Chaperone CUPB2; IG fol 64.7 35 0.0012 31.9 9.6 59 6-67 30-98 (257)
22 2qyw_A Vesicle transport throu 61.5 25 0.00085 28.7 7.0 48 316-363 45-100 (102)
23 1gd2_E Transcription factor PA 61.2 9.8 0.00034 29.9 4.3 44 313-362 21-64 (70)
24 2co7_B SAFB chaperone, putativ 60.6 53 0.0018 29.9 9.8 59 6-67 14-77 (221)
25 1nkp_B MAX protein, MYC proto- 54.4 26 0.0009 27.1 5.8 38 328-365 41-78 (83)
26 2xg5_A PAPD, chaperone protein 54.2 86 0.0029 28.4 10.0 59 6-67 2-68 (218)
27 3vkg_A Dynein heavy chain, cyt 53.5 26 0.00087 43.7 8.1 54 311-364 2019-2072(3245)
28 1yew_A Particulate methane mon 53.4 67 0.0023 32.5 9.8 61 6-68 250-332 (382)
29 2jee_A YIIU; FTSZ, septum, coi 52.9 31 0.001 28.0 6.0 16 323-338 9-24 (81)
30 2fxo_A Myosin heavy chain, car 52.6 52 0.0018 27.6 7.7 51 311-361 74-124 (129)
31 4djm_A DRAB; chaperone, PILI; 52.0 85 0.0029 29.0 9.8 59 6-67 24-87 (239)
32 3nmd_A CGMP dependent protein 51.1 37 0.0013 27.0 6.1 45 317-361 23-67 (72)
33 1lwu_C Fibrinogen gamma chain; 50.9 33 0.0011 33.5 7.1 54 311-364 3-56 (323)
34 3onj_A T-snare VTI1; helix, HA 49.9 42 0.0014 27.0 6.5 39 316-354 30-71 (97)
35 1wt6_A Myotonin-protein kinase 49.4 41 0.0014 27.4 6.3 36 322-364 40-75 (81)
36 1klf_A FIMC chaperone, chapero 49.4 1.1E+02 0.0036 27.6 9.7 59 6-67 2-66 (205)
37 1l8d_A DNA double-strand break 48.8 30 0.001 27.6 5.4 42 321-362 4-45 (112)
38 1vcs_A Vesicle transport throu 48.0 38 0.0013 27.5 6.0 29 316-344 34-62 (102)
39 2r39_A FIXG-related protein; s 47.8 79 0.0027 25.5 7.9 46 22-67 32-78 (118)
40 4emc_A Monopolin complex subun 47.7 17 0.00057 33.7 4.2 39 325-363 11-49 (190)
41 3m91_A Proteasome-associated A 46.3 50 0.0017 24.5 5.8 38 324-361 13-50 (51)
42 3t97_C Nuclear pore glycoprote 45.1 50 0.0017 25.5 5.9 41 323-363 1-41 (64)
43 1nkp_A C-MYC, MYC proto-oncoge 44.3 45 0.0015 26.6 5.8 36 329-364 47-82 (88)
44 3htk_A Structural maintenance 44.1 73 0.0025 23.0 6.5 46 311-356 10-55 (60)
45 2w6a_A ARF GTPase-activating p 44.0 80 0.0027 24.7 6.8 41 314-361 14-54 (63)
46 3hhm_B NISH2 P85alpha; PI3KCA, 43.5 61 0.0021 32.0 7.7 62 303-364 195-256 (373)
47 1ic2_A Tropomyosin alpha chain 43.1 98 0.0034 24.0 7.4 48 313-360 13-60 (81)
48 4h22_A Leucine-rich repeat fli 42.5 1.2E+02 0.0043 25.5 8.3 56 310-365 27-82 (103)
49 1ykh_B RNA polymerase II holoe 42.2 73 0.0025 27.2 7.1 54 311-364 69-122 (132)
50 2jee_A YIIU; FTSZ, septum, coi 40.2 1.3E+02 0.0044 24.4 7.8 48 315-362 22-69 (81)
51 3na7_A HP0958; flagellar bioge 39.9 90 0.0031 28.6 7.8 23 311-333 95-117 (256)
52 3l4q_C Phosphatidylinositol 3- 39.7 56 0.0019 29.6 6.2 61 304-364 87-147 (170)
53 1yke_B RNA polymerase II holoe 39.4 78 0.0027 27.8 7.0 53 312-364 70-122 (151)
54 4etp_A Kinesin-like protein KA 38.8 73 0.0025 31.5 7.5 50 312-361 9-58 (403)
55 2dfs_A Myosin-5A; myosin-V, in 38.7 60 0.0021 36.2 7.5 35 317-351 981-1015(1080)
56 3s4r_A Vimentin; alpha-helix, 38.6 65 0.0022 26.0 5.9 38 326-363 55-92 (93)
57 1ic2_A Tropomyosin alpha chain 38.1 96 0.0033 24.1 6.7 45 319-363 5-49 (81)
58 1l4i_A SFAE protein; periplasm 38.1 2.2E+02 0.0075 25.4 10.4 59 6-67 2-66 (206)
59 2fxo_A Myosin heavy chain, car 36.2 1.1E+02 0.0038 25.6 7.2 46 314-359 14-59 (129)
60 3q0x_A Centriole protein; cent 35.8 70 0.0024 30.1 6.5 45 320-364 171-215 (228)
61 1go4_E MAD1 (mitotic arrest de 35.3 2E+02 0.0067 24.1 8.5 26 340-365 67-92 (100)
62 3rfr_A PMOB; membrane, oxidore 33.8 1.8E+02 0.0063 29.8 9.5 59 7-68 285-364 (419)
63 1gd2_E Transcription factor PA 33.6 63 0.0022 25.2 4.9 37 325-361 34-70 (70)
64 3na7_A HP0958; flagellar bioge 32.9 1.5E+02 0.0053 27.0 8.2 16 348-363 90-105 (256)
65 3u59_A Tropomyosin beta chain; 32.9 1.2E+02 0.0041 24.4 6.7 42 321-362 10-51 (101)
66 3hd7_B Syntaxin-1A; membrane p 32.4 2E+02 0.007 23.4 8.2 50 311-360 26-75 (109)
67 3qc1_A Immunoglobulin-binding 32.0 95 0.0032 29.0 6.7 50 313-362 184-241 (243)
68 3oja_B Anopheles plasmodium-re 31.9 1.4E+02 0.0047 29.5 8.2 10 349-358 566-575 (597)
69 1uix_A RHO-associated kinase; 31.4 1.5E+02 0.0052 23.5 6.8 35 311-345 2-36 (71)
70 1m1j_C Fibrinogen gamma chain; 31.1 1.1E+02 0.0037 30.9 7.3 36 307-342 32-67 (409)
71 3ol1_A Vimentin; structural ge 30.3 2.4E+02 0.0081 23.4 8.3 57 306-362 41-104 (119)
72 3q8t_A Beclin-1; autophagy, AT 30.0 1.9E+02 0.0065 23.4 7.4 47 316-362 7-53 (96)
73 3u1c_A Tropomyosin alpha-1 cha 29.6 1.4E+02 0.005 24.1 6.7 33 326-358 29-61 (101)
74 2wg5_A General control protein 29.3 54 0.0018 27.0 4.1 27 336-362 9-35 (109)
75 1s1c_X RHO-associated, coiled- 28.6 1.7E+02 0.0058 23.2 6.6 47 311-357 4-52 (71)
76 2v0p_A TAP42, type 2A phosphat 28.5 1.3E+02 0.0044 27.6 6.9 50 312-363 170-232 (234)
77 3mq7_A Bone marrow stromal ant 27.9 1.6E+02 0.0056 25.5 6.9 30 335-364 72-101 (121)
78 2e7s_A RAB guanine nucleotide 27.4 63 0.0022 28.4 4.3 20 342-361 61-80 (135)
79 3u06_A Protein claret segregat 26.9 1.3E+02 0.0046 29.9 7.1 51 311-361 8-58 (412)
80 3ghg_C Fibrinogen gamma chain; 26.2 1.7E+02 0.006 29.6 7.9 37 306-342 31-67 (411)
81 4fm3_A Uncharacterized hypothe 26.1 1E+02 0.0035 25.7 5.2 35 323-357 60-94 (98)
82 2dfs_A Myosin-5A; myosin-V, in 25.9 1.7E+02 0.0059 32.6 8.4 12 348-359 1063-1074(1080)
83 2v4h_A NF-kappa-B essential mo 25.9 2.1E+02 0.0073 24.4 7.2 23 342-364 84-106 (110)
84 3cl3_D NF-kappa-B essential mo 25.3 14 0.00048 32.4 -0.1 42 322-363 11-52 (130)
85 3gfu_C Chaperone protein FAEE; 24.9 3.7E+02 0.013 24.7 9.3 59 6-67 2-67 (224)
86 3hn9_A Lamin-B1; structural ge 24.8 75 0.0025 26.8 4.2 42 25-67 25-72 (123)
87 2q6q_A Spindle POLE BODY compo 24.6 2.2E+02 0.0075 22.8 6.6 49 317-365 7-55 (74)
88 2zvf_A Alanyl-tRNA synthetase; 23.6 1.6E+02 0.0054 24.8 6.1 48 330-377 28-77 (171)
89 3swk_A Vimentin; cytoskeleton, 23.5 2.4E+02 0.0083 22.3 6.8 52 311-362 26-84 (86)
90 1wt6_A Myotonin-protein kinase 23.2 2.7E+02 0.0091 22.7 6.9 22 344-365 48-69 (81)
91 4fla_A Regulation of nuclear P 22.8 3.8E+02 0.013 23.4 8.5 56 309-364 71-130 (152)
92 3htk_A Structural maintenance 22.6 2.1E+02 0.007 20.5 5.8 39 324-362 9-47 (60)
93 1m1j_C Fibrinogen gamma chain; 22.1 2.2E+02 0.0074 28.7 7.7 53 311-363 82-134 (409)
94 4ay0_A Chaperone protein CAF1M 21.9 4.5E+02 0.015 23.8 10.6 59 6-67 14-79 (218)
95 1i84_S Smooth muscle myosin he 21.9 82 0.0028 35.0 4.9 52 312-363 856-907 (1184)
96 1naf_A ADP-ribosylation factor 21.7 1.5E+02 0.0052 26.2 5.8 37 328-364 33-69 (158)
97 1oxz_A ADP-ribosylation factor 21.3 1.5E+02 0.0051 26.9 5.8 36 329-364 50-85 (186)
98 1m1j_B Fibrinogen beta chain; 21.3 2.7E+02 0.0092 28.6 8.2 32 308-339 95-126 (464)
99 2w6a_A ARF GTPase-activating p 21.2 1.7E+02 0.0058 22.8 5.2 26 337-362 37-62 (63)
100 4b4t_J 26S protease regulatory 21.2 95 0.0032 31.0 4.8 41 322-362 27-67 (405)
101 3o0z_A RHO-associated protein 21.2 3.1E+02 0.011 24.8 7.7 55 310-364 31-85 (168)
102 3ghg_B Fibrinogen beta chain; 21.0 2.2E+02 0.0075 29.4 7.5 38 306-343 88-125 (461)
103 2i1j_A Moesin; FERM, coiled-co 20.5 23 0.00079 36.6 0.3 40 324-363 409-448 (575)
104 1hlo_A Protein (transcription 20.5 2.3E+02 0.0079 21.6 5.9 54 310-364 26-80 (80)
105 2v66_B Nuclear distribution pr 20.2 3.4E+02 0.012 23.0 7.3 41 310-353 14-54 (111)
106 1go4_E MAD1 (mitotic arrest de 20.2 1.7E+02 0.0057 24.5 5.3 29 335-363 13-41 (100)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-35 Score=256.59 Aligned_cols=125 Identities=35% Similarity=0.588 Sum_probs=115.0
Q ss_pred CCCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH 81 (401)
Q Consensus 3 ~~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~ 81 (401)
+.+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++||||||.|+|+||++++|.
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~-------------- 77 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVS-------------- 77 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEE--------------
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEE--------------
Confidence 369999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceee
Q 015735 82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEE 161 (401)
Q Consensus 82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e 161 (401)
|+|||+++. |+++|+|||+||++.+|++.++ + .++|++..+..+++
T Consensus 78 ------------------------------V~l~~~~~~-p~~~~kDKFlVqs~~~~~~~~d--~-~~~wk~~~~~~i~e 123 (147)
T 2cri_A 78 ------------------------------VMLQPFDYD-PNEKSKHKFMVQTIFAPPNISD--M-EAVWKEAKPDELMD 123 (147)
T ss_dssp ------------------------------EEECCCCCC-TTCCSCCCEEEEEEECCTTCCC--H-HHHHHHSCTTTCEE
T ss_pred ------------------------------EEECCCcCC-ccccCCCEEEEEEEEcCCCccc--H-HHHhhcCCCCceEE
Confidence 999998765 5689999999999999987543 3 68999999999999
Q ss_pred EEEEEEEeCCCCCC
Q 015735 162 KKLRVILMSPPQSP 175 (401)
Q Consensus 162 ~KLrVvf~~p~~~p 175 (401)
+||||+|+.|++.+
T Consensus 124 ~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 124 SKLRCVFEMPNEND 137 (147)
T ss_dssp EEEEEEEECSCCSS
T ss_pred EEEEEEEecCCCCc
Confidence 99999999987664
No 2
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=7.2e-36 Score=261.16 Aligned_cols=131 Identities=30% Similarity=0.413 Sum_probs=119.3
Q ss_pred CCCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH 81 (401)
Q Consensus 3 ~~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~ 81 (401)
+.+|.|+|. +|.|.++++++.+|.|+|+|+++++||||||||+|++||||||.|+|.||++++|.
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~-------------- 81 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDII-------------- 81 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEE--------------
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEE--------------
Confidence 469999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeC--CCCCCcchhhhhhccCCCCce
Q 015735 82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYV 159 (401)
Q Consensus 82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp--~~~sd~di~~~mwkk~~~~~v 159 (401)
|+||++.+ .+|+|||+||++.++ .+.+..|+ .++|++..+..+
T Consensus 82 ------------------------------V~lq~~~~----~~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i 126 (152)
T 1wic_A 82 ------------------------------VSPHGGLT----VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKV 126 (152)
T ss_dssp ------------------------------EEECSSSC----CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTC
T ss_pred ------------------------------EEecCccc----CCCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCce
Confidence 99999864 378999999999999 56566676 489999999999
Q ss_pred eeEEEEEEEeCCCCCCCcCCCCC
Q 015735 160 EEKKLRVILMSPPQSPVLLPRNG 182 (401)
Q Consensus 160 ~e~KLrVvf~~p~~~p~~~~~~~ 182 (401)
+++||||+|+.+++|+++...+.
T Consensus 127 ~e~kLrv~f~~~~~p~s~~~~g~ 149 (152)
T 1wic_A 127 MEHRLRCHTVESSKPNSLMLSGP 149 (152)
T ss_dssp EEEEECBCCCCSCSSSSSCCCCC
T ss_pred EEEEEEEEECCCCCCCCccccCC
Confidence 99999999999999988766544
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=6.3e-35 Score=245.93 Aligned_cols=118 Identities=35% Similarity=0.590 Sum_probs=109.8
Q ss_pred CCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhccc
Q 015735 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHL 82 (401)
Q Consensus 4 ~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~ 82 (401)
.+|.|+|. +|.|.+++++++++.|+|+|+|+++||||||||+|++||||||.|+|+||++++|.
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~--------------- 73 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVS--------------- 73 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEE---------------
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEE---------------
Confidence 69999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceeeE
Q 015735 83 TLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEK 162 (401)
Q Consensus 83 ~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e~ 162 (401)
|+|||+++. |+++|+|||+||++.+|++.++ + .++|++.++..++++
T Consensus 74 -----------------------------V~~~~~~~~-p~~~~~dkF~V~s~~~~~~~~~--~-~~~w~~~~~~~i~e~ 120 (128)
T 1z9l_A 74 -----------------------------VMLQPFDYD-PNEKSKHKFMVQTIFAPPNISD--M-EAVWKEAKPDELMDS 120 (128)
T ss_dssp -----------------------------EEECCCCCC-TTCCCCCEEEEEEEECCTTCSC--H-HHHHHSCCGGGCEEE
T ss_pred -----------------------------EEECcCcCC-cccccCCEEEEEEEECCCCcch--H-HHHhhcCCCCceEEE
Confidence 999998765 5679999999999999987643 3 689999999999999
Q ss_pred EEEEEEe
Q 015735 163 KLRVILM 169 (401)
Q Consensus 163 KLrVvf~ 169 (401)
||||+|.
T Consensus 121 kLrv~f~ 127 (128)
T 1z9l_A 121 KLRCVFE 127 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.98 E-value=3.1e-32 Score=231.21 Aligned_cols=119 Identities=21% Similarity=0.352 Sum_probs=106.0
Q ss_pred CCCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH 81 (401)
Q Consensus 3 ~~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~ 81 (401)
...|.|+|. +|.|++|++++.+|.|+|+|+|+++||||||||+|++||||||+|+|+||+++.|.
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~-------------- 71 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMA-------------- 71 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEE--------------
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEE--------------
Confidence 357999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceee
Q 015735 82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEE 161 (401)
Q Consensus 82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e 161 (401)
|+||++++.|++.+ +|||+||++.+|++.+ +|+...|| ..+ ..+..
T Consensus 72 ------------------------------V~~q~~~~~~~~~~-kDKf~Vq~~~~p~~~~-~~~~~~wf-~~d-~~~~~ 117 (126)
T 1msp_A 72 ------------------------------VSCDTFNAATEDLN-NDRITIEWTNTPDGAA-KQFRREWF-QGD-GMVRR 117 (126)
T ss_dssp ------------------------------EEECCCCGGGSCCS-SCEEEEEEEECCTTCC-SSCCTHHH-HSS-SCCEE
T ss_pred ------------------------------EEecCCCCCCCccC-CCEEEEEEEECCCCcc-hhhhHHhh-cCC-CceEE
Confidence 99999998876654 9999999999998874 57765555 433 46889
Q ss_pred EEEEEEEe
Q 015735 162 KKLRVILM 169 (401)
Q Consensus 162 ~KLrVvf~ 169 (401)
++|+|.|.
T Consensus 118 k~L~V~Yn 125 (126)
T 1msp_A 118 KNLPIEYN 125 (126)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=5.8e-28 Score=202.37 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=89.6
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcccccc
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLL 85 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~~~~ 85 (401)
|.|+|.+|.|.++ ..+|.|+|+|+|+++||||||||+|++||||||.|+|+||++++|.
T Consensus 3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~------------------ 61 (109)
T 1row_A 3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVV------------------ 61 (109)
T ss_dssp CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEE------------------
T ss_pred EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEE------------------
Confidence 8999999999987 3479999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceeeEEEE
Q 015735 86 ECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLR 165 (401)
Q Consensus 86 ~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e~KLr 165 (401)
|+||++ ..++|||+||++.++++..+. .++|++..+ ..+.+|+
T Consensus 62 --------------------------I~~q~~------~~~~dKflvq~~~~~~~~~d~---~~~fk~~~~--~g~~~i~ 104 (109)
T 1row_A 62 --------------------------ITRTAG------APKEDKLVVHFASAPADATDA---QAAFVAVAP--AGTVTIP 104 (109)
T ss_dssp --------------------------EEECSC------CCEEEEEEEEEEECCTTCSCH---HHHHTTCCC--CEEEEEE
T ss_pred --------------------------EEeCCC------CCCCCEEEEEEEECCCCCCCH---HHHhhcCCC--CceEEEE
Confidence 999984 137999999999998765432 589999755 3455665
Q ss_pred EE
Q 015735 166 VI 167 (401)
Q Consensus 166 Vv 167 (401)
+.
T Consensus 105 l~ 106 (109)
T 1row_A 105 MS 106 (109)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=4.3e-27 Score=200.33 Aligned_cols=106 Identities=24% Similarity=0.373 Sum_probs=93.0
Q ss_pred CCceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcccc
Q 015735 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLT 83 (401)
Q Consensus 4 ~lL~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~~ 83 (401)
.++.++|.+|.|+++ +.+|.|+|+|+|+++||||||||+|++||||||.|+|+||++++|.
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~---------------- 69 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLD---------------- 69 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEE----------------
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEE----------------
Confidence 578999999999875 4599999999999999999999999999999999999999999999
Q ss_pred cchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceeeEE
Q 015735 84 LLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKK 163 (401)
Q Consensus 84 ~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e~K 163 (401)
|+|||+ | .++|||+||++.++++..+. .++|++..+ .++.+
T Consensus 70 ----------------------------I~~q~~---~---~k~DKflVq~~~~~~d~~d~---~~~fk~~~~--~g~~~ 110 (116)
T 1m1s_A 70 ----------------------------INRLPG---P---PKEDKIVIQYAEVPAEETDP---MAPFKAGAQ--QGEII 110 (116)
T ss_dssp ----------------------------EEECSC---C---SCEEEEEEEEEEECTTCCCT---THHHHTTCC--CEEEE
T ss_pred ----------------------------EEeCCC---C---CCCCEEEEEEEECCCCCCCH---HHHHhcCCC--CceEE
Confidence 999986 2 47999999999999765443 579999765 57778
Q ss_pred EEEE
Q 015735 164 LRVI 167 (401)
Q Consensus 164 LrVv 167 (401)
|++.
T Consensus 111 i~l~ 114 (116)
T 1m1s_A 111 VKLI 114 (116)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=4.9e-05 Score=62.59 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=52.8
Q ss_pred CCceEecCeeEEec-ccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEee
Q 015735 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTG 68 (401)
Q Consensus 4 ~lL~I~P~EL~F~~-p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~ 68 (401)
..|++ |..|.|.. +.+...+..+.|+|.++.++.|++++.+ -|.|.|+.|.|.||+++.|.+
T Consensus 24 ~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 24 AILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEV 86 (122)
T ss_dssp CCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEE
T ss_pred cEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEE
Confidence 34555 66788864 5577889999999999999999999854 699999999999999999993
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.26 E-value=0.0016 Score=55.89 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCceEecCeeEEec-ccCceeEEEEEEEcCCCCeEEEEEeeC------CCCceeeeCCceeeCCCCeEEEeecccc
Q 015735 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTGINCV 72 (401)
Q Consensus 4 ~lL~I~P~EL~F~~-p~~k~~t~~L~L~N~Sd~~VAFKVKTT------aPkkYcVRPN~GiI~Pg~s~~I~~~~c~ 72 (401)
+-+.+++.+|.|-- .+....+..|+|+|.+.-+..|++.-. .+.-+.|.|..|.|.||+++.|.++.++
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56788889999973 567788999999999999999998742 2345779999999999999999987665
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.23 E-value=0.0013 Score=52.31 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=56.1
Q ss_pred CCceEecCeeEEec-ccCceeEEEEEEEcCCCCeEEEEEeeCC-C--CceeeeCCceeeCCCCeEEEeecccc
Q 015735 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS-P--KKYCVRPNVSIIKPKAISDFTGINCV 72 (401)
Q Consensus 4 ~lL~I~P~EL~F~~-p~~k~~t~~L~L~N~Sd~~VAFKVKTTa-P--kkYcVRPN~GiI~Pg~s~~I~~~~c~ 72 (401)
+.+.+++..|.|-. .++...+..++|+|.++.++.|+++... + ..|.|.|..|.|.||++..|.+.+|.
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 45778888888854 4567788999999999999999996422 1 46999999999999999999966544
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=96.33 E-value=0.014 Score=56.74 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=57.5
Q ss_pred CCceEecCeeEEe-cccCceeEEEEEEEcCCCCeEEEEEeeCCC-Cc-----eeeeCCceeeCCCCeEEEeecccc
Q 015735 4 ELLDIQPLELKFT-FEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-KK-----YCVRPNVSIIKPKAISDFTGINCV 72 (401)
Q Consensus 4 ~lL~I~P~EL~F~-~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaP-kk-----YcVRPN~GiI~Pg~s~~I~~~~c~ 72 (401)
+-+.+++.++.|- -.+....+..|+|+|.+.-+..|++.-... .. +.|.|..|+|.||+++.|.++.|+
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 5678899999995 367889999999999999999999875422 23 459999999999999999977555
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=90.38 E-value=1.1 Score=40.25 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=52.9
Q ss_pred ceEecCeeEEec-ccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeec
Q 015735 6 LDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGI 69 (401)
Q Consensus 6 L~I~P~EL~F~~-p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~ 69 (401)
|.++|..+.|.- +..+..+..++++|.++.++-++.-.. |.....++..+.|.||++..|.+.
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt 66 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLS 66 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEE
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEE
Confidence 788899999964 335566779999999999999987544 888888999999999999999954
No 12
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.59 E-value=1.9 Score=34.29 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=43.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 367 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~~~ 367 (401)
++..++..+|.|+.-.+.+|..|.+.=-..-++.++|+.+|..|+.+-...
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355678889999999999999999999999999999999999999886443
No 13
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=85.93 E-value=3 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=50.4
Q ss_pred CceEecCeeEEe-cccCceeEEEEEEEcCCCCeEEE-EEeeCCCCceeeeCCceeeCCCCeEEEee
Q 015735 5 LLDIQPLELKFT-FEVKKQSTCVIQLGNKSDQCVAF-KVKTTSPKKYCVRPNVSIIKPKAISDFTG 68 (401)
Q Consensus 5 lL~I~P~EL~F~-~p~~k~~t~~L~L~N~Sd~~VAF-KVKTTaPkkYcVRPN~GiI~Pg~s~~I~~ 68 (401)
-+.++ ..+.|- .+ ....+..++++|..+.++.+ +|+|+. +-..+.++.+.|.||++..|.+
T Consensus 119 ~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v 181 (220)
T 2qsv_A 119 VMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRI 181 (220)
T ss_dssp CEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEE
T ss_pred EEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEE
Confidence 45667 777775 34 67788999999999999887 888764 7888889999999999999993
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.44 E-value=8.6 Score=32.88 Aligned_cols=59 Identities=31% Similarity=0.437 Sum_probs=39.1
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhc
Q 015735 303 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME--------------ARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 303 ~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~E--------------e~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-.|....++.++++.|+..+..+ ..||...|..|+. .+..|.-+++.|+.|++.||+..
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777776544333 5566666665554 35566777899999999998654
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.66 E-value=6.2 Score=34.24 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=13.7
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 344 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~ 344 (401)
++.|.-.++.+...++.++.+-..-|..|.+|-.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333333
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.37 E-value=9.6 Score=33.03 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
.||.+|...+.+++++..-+.+|.++.+.-.++..+|+.||+
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555554455555554444
No 17
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=70.05 E-value=9 Score=30.28 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 328 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 328 k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-|..|..-|..|.++.....++++.|+.|.+.|+++-
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999998764
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.56 E-value=12 Score=31.25 Aligned_cols=47 Identities=30% Similarity=0.501 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~-------Ee~~~a~~e~~~Lq~El~~lr 361 (401)
++.++.++..+++++...+.-+.+|+ ..|..|-+++.++.+||+-|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444 346678889999999999875
No 19
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=67.91 E-value=4.8 Score=38.53 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=32.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+++.++.....-..+|.++.+.+.+|..+||.|++.|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666667788999999999999999999999984
No 20
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.09 E-value=10 Score=27.68 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
+++|++-.+-++....|.|--.+-..||++|+|=|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34444555555555555554455557888888844
No 21
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=64.66 E-value=35 Score=31.92 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=45.6
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC------C----CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa------P----kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.|.-+.|... +...+|+|.|.++.++.-.+.... | .-|-|-|..-.|+||+.-.|.
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lR 98 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLR 98 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEE
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEE
Confidence 5677888888864 335799999999988776665432 1 139999999999999999888
No 22
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=61.50 E-value=25 Score=28.70 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=33.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHhh
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARK-LATREKDM-------LKHELEVLRRK 363 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~-~a~~e~~~-------Lq~El~~lrr~ 363 (401)
++.|..+...+..+.||+.+|..+.-|-+ ....++.+ -|+||+-|+++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677788888999999999999976644 33344444 35566666553
No 23
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.23 E-value=9.8 Score=29.85 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=21.3
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.|-+.|.+ .+.+.+.-+..|..+......|++.|+++++.|+.
T Consensus 21 RafReRK~~------~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 21 RAFRKRKED------HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 23333444444444444445555555555555554
No 24
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=60.61 E-value=53 Score=29.85 Aligned_cols=59 Identities=8% Similarity=0.218 Sum_probs=46.3
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCC-----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTa-----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|.... ...+|+|.|.++.++.-.+.... -.-|-|-|..-.|+||+.-.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lR 77 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLR 77 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEE
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEE
Confidence 56778888998743 45699999999987766654421 1249999999999999999988
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.35 E-value=26 Score=27.11 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 328 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 328 k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
-|..|-.-|..|.++...-.++.+.|++|.+.|+.+..
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999998888888899999999998887653
No 26
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=54.25 E-value=86 Score=28.43 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=45.6
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeCC-------CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTTa-------PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|... ....+|+|.|.++. ++.-.+.... -.-|-|-|..-.|+||+.-.|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lR 68 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVR 68 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEE
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEE
Confidence 4567778888874 34679999999988 7766654432 1249999999999999999988
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.54 E-value=26 Score=43.69 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=45.8
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+.+..++.+.+|++.++++.+.+.-|.+|+++-..+++|+++|+.|++...+|-
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888888999999999999999999999999999999877664
No 28
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=53.39 E-value=67 Score=32.54 Aligned_cols=61 Identities=8% Similarity=0.173 Sum_probs=41.9
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCce----------------------eeeCCceeeCCCCe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKY----------------------CVRPNVSIIKPKAI 63 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkY----------------------cVRPN~GiI~Pg~s 63 (401)
+.+.-..-.|.-| .+..+-.++++|+++++|-..==+|+.=+| .|.||.- |.||+|
T Consensus 250 V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~p-I~PGET 327 (382)
T 1yew_A 250 VSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSP-LAPGET 327 (382)
T ss_dssp EEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSC-BCTTCE
T ss_pred eEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCC-cCCCce
Confidence 3444444555544 678889999999999998877545554444 4445443 899999
Q ss_pred EEEee
Q 015735 64 SDFTG 68 (401)
Q Consensus 64 ~~I~~ 68 (401)
.+|.+
T Consensus 328 r~~~v 332 (382)
T 1yew_A 328 RTVDV 332 (382)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99983
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.90 E-value=31 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.4
Q ss_pred hhhhhhhHHHHHHHHH
Q 015735 323 NVMDSQLREAEHTIRK 338 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~k 338 (401)
+.+++|...|-.+|.-
T Consensus 9 eqLE~KIq~avdtI~l 24 (81)
T 2jee_A 9 EKLEAKVQQAIDTITL 24 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666555
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.58 E-value=52 Score=27.61 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+...-.+|-.++..+.+.+.+-+.....|+.+++..-++.+.|+..++-+-
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666677777777777777777777777777777777766553
No 31
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=52.00 E-value=85 Score=29.05 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=44.8
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC-----CCCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT-----SPKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT-----aPkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|... ....+|+|+|.++.++.-.+... ...-|-|-|..-.|+||+.-.|.
T Consensus 24 v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lR 87 (239)
T 4djm_A 24 LHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLR 87 (239)
T ss_dssp CEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEE
T ss_pred EEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 5677888888874 33579999999988765554421 12249999999999999999888
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.14 E-value=37 Score=27.04 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+|+.-|..-++++++-+..|..|..+=..--.+.+.||-||+.+|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 343344444555666666777776666666666778888888775
No 33
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=50.90 E-value=33 Score=33.54 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=41.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+++....|..++..++..+..++..|..|.+.-...-.+.+.|++.+..|+.+-
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777778888888888899998887777788888998888887654
No 34
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=49.86 E-value=42 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLA---TREKDMLK 354 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a---~~e~~~Lq 354 (401)
++.|..+...+..+.||..+|..+.-|-++. ..++.+++
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~ 71 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYK 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4677888888999999999999997776665 34444444
No 35
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.40 E-value=41 Score=27.40 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=20.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 322 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 322 l~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.-..+++|.||++-...| ..|..+|+.+|+.||..+
T Consensus 40 ni~~eskL~eae~rn~eL-------~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 40 NQNFASQLREAEARNRDL-------EAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccc
Confidence 334555666666555544 344667777777776544
No 36
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=49.36 E-value=1.1e+02 Score=27.58 Aligned_cols=59 Identities=10% Similarity=0.191 Sum_probs=45.4
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeCC-----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTTa-----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|... ....+|+|.|.+++ ++.-.+.... -.-|-|-|..-.|+||+.-.|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lR 66 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLR 66 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEE
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 4567778888874 34679999999987 7666654321 2349999999999999999988
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.78 E-value=30 Score=27.62 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=28.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 321 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 321 kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++...+.++.+...-|.+|.+++..-..+...+++.|.+|..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566666777777777777777777777777777753
No 38
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.01 E-value=38 Score=27.55 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARK 344 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~ 344 (401)
++.|..+...+..+.||+.+|..+.-|-+
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788889999999999877644
No 39
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=47.83 E-value=79 Score=25.54 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=35.0
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCceee-eCCceeeCCCCeEEEe
Q 015735 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVSIIKPKAISDFT 67 (401)
Q Consensus 22 ~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcV-RPN~GiI~Pg~s~~I~ 67 (401)
...-.|+|.|++.+...|.++-.....+.+ .|..=.|+||+...+.
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~ 78 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLP 78 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEE
Confidence 456789999999999999988876544654 3554567888888777
No 40
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.73 E-value=17 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 325 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 325 ~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
++++++.|..+|++|.-|...-.+|.+...+|++.|+++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888776665555555555555555543
No 41
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.28 E-value=50 Score=24.54 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+++.++....+-=.||.+.-+.|-+|..+|+.||+.|-
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444445556677777888888889999988763
No 42
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=45.06 E-value=50 Score=25.48 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=33.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
|..|..|-+-..-|++|.++-..+.++.+.|-|+|+.+-..
T Consensus 1 n~WD~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~Q 41 (64)
T 3t97_C 1 NAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQ 41 (64)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999987643
No 43
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.30 E-value=45 Score=26.57 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 329 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 329 ~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
|..|-.-|..|.++.....++.+.|++|-+.|+++.
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788887777776666666666666666543
No 44
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.13 E-value=73 Score=22.96 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=22.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 356 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~E 356 (401)
+-+++.+.+.+.+..++.+.++..-+.+++++-+.+..+..+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544444555555555555555555555554444444443
No 45
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.98 E-value=80 Score=24.66 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
.|-|+|.-|... ++-|..|+.-.++--+|.+.||.++-.|.
T Consensus 14 eylevK~ALaaS-------eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 14 EYLELKKALATS-------EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-------HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 344555555444 44455555555554454444444444443
No 46
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=43.47 E-value=61 Score=32.03 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=51.5
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 303 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 303 ~~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++++....+....+.||++|.++......-+.-+..-.++-+..-++.+.|+=||..||+..
T Consensus 195 ~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~r 256 (373)
T 3hhm_B 195 GNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTR 256 (373)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 34455667888899999999999888888888888888888888899999999999999843
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.11 E-value=98 Score=24.01 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=34.1
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 313 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
.|.++...++..++.++.+++....++.+|-.+-.+..+.|+.||+..
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777777777777777777644
No 48
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.47 E-value=1.2e+02 Score=25.54 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=34.4
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+.=-++-||-+|.++++.+.+...-.....-+-..-.+..+.|+.+++.||....
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566676776776666665544444444444555667778888888886553
No 49
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.23 E-value=73 Score=27.16 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=43.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-+|+++.|=..|-+.+.--++-.+.|.+|-+|.+.+-+|+.+.-+|-+.|.++.
T Consensus 69 k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 69 KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888888888866666678899999998888888888888887776654
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.16 E-value=1.3e+02 Score=24.40 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 315 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 315 ~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
++=|+..+.+++.|-.....-..-++..|..-.+|+++|++|......
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555566666677788888888766554
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.92 E-value=90 Score=28.57 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=9.6
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAE 333 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~ 333 (401)
+.+.++.++.+...++..+.|+.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 52
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=39.73 E-value=56 Score=29.55 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=50.7
Q ss_pred hhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 304 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 304 ~~~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+++....+....+-|+++|.++.+.......-+....++-+..-++.+.|+=||-.||+..
T Consensus 87 ~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 87 NEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp CSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444456777888899999999888888888888888888888899999999999999765
No 53
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.37 E-value=78 Score=27.78 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=40.6
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
+|+++.|=..|-+.+.--++-.+.|.+|.+|.+.+-+|+.+.-+|-+.|.++.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888766666677888888888887777777777777666543
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.83 E-value=73 Score=31.52 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=34.4
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
....++|+.+...++.++.+++.-+..|.+.=...-+++++|..++..||
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455566666666666666666666666666666677888888888776
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.66 E-value=60 Score=36.21 Aligned_cols=35 Identities=6% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 351 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~ 351 (401)
+++.++..++.++.+.+..+.++..|++..-+..+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566666655555444333
No 56
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.58 E-value=65 Score=26.03 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 326 DSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 326 ~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+..++++...|..++-|+....-|.+.|+.+++.+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777888888888888888888899888888865
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.09 E-value=96 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 319 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 319 k~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
|.|+..|+.....|..-...+...-+.+-+...++-+|+..|.|+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444443333333333344444444555555555544
No 58
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=38.06 E-value=2.2e+02 Score=25.43 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=44.9
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCC-CeEEEEEeeCC-----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd-~~VAFKVKTTa-----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.+.-+.|... ....+|+|.|.++ .++.-.+.... -.-|-|-|..-.|+||+.-.|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lR 66 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLR 66 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEE
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEE
Confidence 4567778888874 3467999999986 77666654321 1249999999999999999988
No 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.18 E-value=1.1e+02 Score=25.56 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=31.8
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 314 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 359 (401)
Q Consensus 314 d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~ 359 (401)
.+..+..++..++.++...++....|.+......+++..|+..|..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777777777777877788888888777766653
No 60
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.81 E-value=70 Score=30.06 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=34.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 320 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 320 ~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+++.+++++..-+.-+.+.++|+++.+-+...-+|.+..+|..-
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666777888899999999999999999888653
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.33 E-value=2e+02 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 340 MEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 340 ~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
.+.+..+-++.++||.|++-||.+..
T Consensus 67 ~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 67 SVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666888999999999998763
No 62
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=33.83 E-value=1.8e+02 Score=29.75 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=41.2
Q ss_pred eEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCcee--------------------e-eCCceeeCCCCeEE
Q 015735 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC--------------------V-RPNVSIIKPKAISD 65 (401)
Q Consensus 7 ~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYc--------------------V-RPN~GiI~Pg~s~~ 65 (401)
.++-..-.|.-| .+..+-.++++|+++++|-+.==+|+.-+|. + .|| -|.||+|.+
T Consensus 285 ~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETrt 361 (419)
T 3rfr_A 285 TTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESKE 361 (419)
T ss_dssp EEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEEE
T ss_pred EEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcceE
Confidence 333344455544 6788899999999999998875555544443 1 234 599999999
Q ss_pred Eee
Q 015735 66 FTG 68 (401)
Q Consensus 66 I~~ 68 (401)
|++
T Consensus 362 ~~V 364 (419)
T 3rfr_A 362 IVV 364 (419)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.58 E-value=63 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 325 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 325 ~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
|+.++.+.+.....|..|...--++...|+.|+..||
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455566666666788888888888999999988765
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.89 E-value=1.5e+02 Score=26.98 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 015735 348 REKDMLKHELEVLRRK 363 (401)
Q Consensus 348 ~e~~~Lq~El~~lrr~ 363 (401)
+|.+.|++|++.+.++
T Consensus 90 kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 90 RELRSLNIEEDIAKER 105 (256)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554443
No 65
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.86 E-value=1.2e+02 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=16.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 321 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 321 kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
|++.|......|..-...+....+.+-+.+.++-+|+.-|.|
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~k 51 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333344444444444433
No 66
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=32.37 E-value=2e+02 Score=23.37 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=21.8
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 360 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~l 360 (401)
+.++..||..=...|-.-..+=..+|.....-=..+...-++=.+||..-
T Consensus 26 Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 26 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333444455555444444444455555566433
No 67
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=31.97 E-value=95 Score=29.00 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=35.3
Q ss_pred hhHHHHHHhhhhhhhhhH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 313 KDFEELKLKLNVMDSQLR------EA--EHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 313 ~d~~elk~kl~~~~~k~~------Ea--~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
|.-.||+.||..++...+ |. +-.+..|+----.+.++.+.+.+|+++|+.
T Consensus 184 K~eKeLe~kL~~L~~~~e~~~~DeE~~Re~yL~~L~l~~~~s~~~Lesi~~EleiL~~ 241 (243)
T 3qc1_A 184 KQKKEVEHRLSALKSAVESGQADDERVREYHLLHLRRWIAVSLEELESIDQEIKILKE 241 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566678888877765432 21 224555566666789999999999999985
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.85 E-value=1.4e+02 Score=29.46 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 015735 349 EKDMLKHELE 358 (401)
Q Consensus 349 e~~~Lq~El~ 358 (401)
|++.+++|+.
T Consensus 566 e~~~~~~~~~ 575 (597)
T 3oja_B 566 ETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 69
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=31.41 E-value=1.5e+02 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=22.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 345 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~ 345 (401)
+++|++++.....++-.++.++..-+.++.+|...
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~ 36 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEIS 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666777777666666655544
No 70
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.15 E-value=1.1e+02 Score=30.89 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 015735 307 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 342 (401)
Q Consensus 307 ~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee 342 (401)
.+..|-+|+++|+.-|.+++...+++..+|..+.+-
T Consensus 32 ~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777666555443
No 71
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.27 E-value=2.4e+02 Score=23.44 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 015735 306 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 362 (401)
Q Consensus 306 ~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~-------~e~~~Lq~El~~lrr 362 (401)
....++-.+.+.+|.|..+--.+-..++.-|..|+..-..++ .+.+-|+.||.+||+
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
No 72
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.02 E-value=1.9e+02 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=24.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 316 ~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.+..+|..++..=.++..-+.+|..++...-.+...++.|.+.|..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444555556666666666666666666555543
No 73
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.59 E-value=1.4e+02 Score=24.11 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 326 DSQLREAEHTIRKLMEARKLATREKDMLKHELE 358 (401)
Q Consensus 326 ~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~ 358 (401)
+.++.+++.--.++-+|-.+-.+.++.|..||+
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444443
No 74
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.31 E-value=54 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 336 IRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 336 I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
...|.++++.+.+|.++|+.|++.|+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456888888899999999999999985
No 75
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=28.59 E-value=1.7e+02 Score=23.17 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT--REKDMLKHEL 357 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~--~e~~~Lq~El 357 (401)
+++|++++.....++-.++.++..-+.++.+|....+ +-..+|++|-
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776667777777777766776665554422 2234555554
No 76
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=28.45 E-value=1.3e+02 Score=27.57 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=34.2
Q ss_pred hhhHHHHHHhhhhhhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 312 AKDFEELKLKLNVMDSQ-------------LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k-------------~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
.|.-.||+.||..++.. .+|. .+..|+----.+.++.+.+.+|+++|+..
T Consensus 170 fK~eKel~~kL~~L~~~~~~~~~D~~deE~~Re~--~l~~L~~~~~~s~~~Lesi~~ElemL~~~ 232 (234)
T 2v0p_A 170 FQRNKEISTKLHCLELELKNNDEDHDHDELLREL--YLMRLHHFSLDTINNIEQNLFECEMLSNF 232 (234)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777888777433 2222 34444555557899999999999999864
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.88 E-value=1.6e+02 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 335 TIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 335 ~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+.+|..|-..-.|+.+..-.|++.||+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555556666666667776654
No 78
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.44 E-value=63 Score=28.38 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015735 342 ARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 342 e~~~a~~e~~~Lq~El~~lr 361 (401)
-|..|-+++.++.+|||-|-
T Consensus 61 ~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999775
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.87 E-value=1.3e+02 Score=29.88 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=33.6
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 361 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lr 361 (401)
+-....+++.+...++.+..+....+..+.|+-.....++++|..++..||
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666666666666666666666666666666667777777777665
No 80
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.15 E-value=1.7e+02 Score=29.59 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 015735 306 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 342 (401)
Q Consensus 306 ~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee 342 (401)
.++..|-+|+++|+..|..+.....+|...|..|+.-
T Consensus 31 kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 4567788999999999999999999999988877664
No 81
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=26.08 E-value=1e+02 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 323 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 357 (401)
Q Consensus 323 ~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El 357 (401)
.+++..|.||++...|=.+.-+..-+-.+.|+|||
T Consensus 60 Ae~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 60 AELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777776665554444444444455544
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.90 E-value=1.7e+02 Score=32.61 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 015735 348 REKDMLKHELEV 359 (401)
Q Consensus 348 ~e~~~Lq~El~~ 359 (401)
+++.+|+.|++.
T Consensus 1063 ~~~~~~~~~~~~ 1074 (1080)
T 2dfs_A 1063 EETKQLELDLND 1074 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.90 E-value=2.1e+02 Score=24.38 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 015735 342 ARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 342 e~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.|..+-.+++.|+++|+.|.++.
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Confidence 44456667777777777777654
No 84
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.31 E-value=14 Score=32.42 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=1.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 322 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 322 l~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
|.+..++|.+|+.+-.+|.+.-+++.++...+..||+.++++
T Consensus 11 LqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq 52 (130)
T 3cl3_D 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ 52 (130)
T ss_dssp ----------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456778889999888888888888888888888888877754
No 85
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=24.88 E-value=3.7e+02 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=41.5
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCC-eEEEEEeeC--C----CCceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S----PKKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~-~VAFKVKTT--a----PkkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.++..-+.|... ....+|+|.|.++. ++.-.+... . ..-|-|-|..-.|+||+.-.|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lR 67 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLR 67 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEE
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEE
Confidence 3455567788764 33579999999876 443333321 1 1249999999999999999888
No 86
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=24.84 E-value=75 Score=26.76 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCC---ceeeeCCceeeCCCCeEEEe
Q 015735 25 CVIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 25 ~~L~L~N~Sd~~VA---FKVKTTaPk---kYcVRPN~GiI~Pg~s~~I~ 67 (401)
-.++|.|.+++.+. |+++=...+ .|.. |..=+|+||+++.|-
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 37899999887664 778755443 4665 444489999999988
No 87
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.63 E-value=2.2e+02 Score=22.77 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=26.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015735 317 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 317 elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
||..+|.+-+..+.+...+|--|+-.--.-+.-+.||+.++..+++.++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~ 55 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKIS 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3445555555555555555554544444445566677777666665543
No 88
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.64 E-value=1.6e+02 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccCcchhh
Q 015735 330 REAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN--LRRVQVGFPLLF 377 (401)
Q Consensus 330 ~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~~--~~~~~~Gf~llf 377 (401)
.+....|.+|.+|.+..-+|.++|++++....-+.- ....-.|+.+++
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~ 77 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVA 77 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEE
Confidence 466678899999999999999999999876642211 111225777654
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.49 E-value=2.4e+02 Score=22.31 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=29.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 362 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~-------~e~~~Lq~El~~lrr 362 (401)
+..+.+.+|.|...=-..-.+|+.-|..|+..-..++ .+.+-|+.||.+||+
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555554333334455666666655544443 455677888888874
No 90
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.23 E-value=2.7e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 015735 344 KLATREKDMLKHELEVLRRKSN 365 (401)
Q Consensus 344 ~~a~~e~~~Lq~El~~lrr~~~ 365 (401)
+-+-.+|+.|.+||+.||.+..
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999998763
No 91
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.84 E-value=3.8e+02 Score=23.41 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHhhhHHHHHHhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 309 LKLAKDFEELKLKLNV----MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 309 ~~~~~d~~elk~kl~~----~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
..+.+.|++--..|++ ++..+.+=..++..|.+-...-.++..+-++.++--|++.
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444443 3444444455666666655555555555555555555543
No 92
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.64 E-value=2.1e+02 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
.++.++.+....+..++.+...+....+.+..+|...|-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444555555555555555555555554443
No 93
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.14 E-value=2.2e+02 Score=28.69 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=40.2
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 311 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 311 ~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
+++...++..++..++..+...++.|..|.+.-...-...+.|++.+..|..+
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36667777777788888888888888888876666666777888888777654
No 94
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=21.94 E-value=4.5e+02 Score=23.81 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=43.3
Q ss_pred ceEecCeeEEecccCceeEEEEEEEcCCCCeEEEEEeeC------CC-CceeeeCCceeeCCCCeEEEe
Q 015735 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------SP-KKYCVRPNVSIIKPKAISDFT 67 (401)
Q Consensus 6 L~I~P~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTT------aP-kkYcVRPN~GiI~Pg~s~~I~ 67 (401)
+.|.-.-+.|+.. ....+|+|+|.++.++.-.+... .+ .-|-|-|..-.|+||+.-.|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lR 79 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLR 79 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEE
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEE
Confidence 4455566777653 33578999999998876655431 11 239999999999999999988
No 95
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.86 E-value=82 Score=35.01 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 312 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 312 ~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
.+.+++++.++..++.++...+..+..|.++.....++.+.++++|...++.
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~ 907 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 96
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.74 E-value=1.5e+02 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 328 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 328 k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
-|.+|..+|.-+..+-....++..++..||+.+|...
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv 69 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNV 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 3778888888777666666888999999999988754
No 97
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.30 E-value=1.5e+02 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 329 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 329 ~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
|.+|..+|.-+..+-....++..++..||+.+|...
T Consensus 50 L~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv 85 (186)
T 1oxz_A 50 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNV 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 678888887776665666788888999999888654
No 98
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.27 E-value=2.7e+02 Score=28.62 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=24.3
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHH
Q 015735 308 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 339 (401)
Q Consensus 308 ~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL 339 (401)
+..|-+|+++|+.+|..+..+..+|...|..|
T Consensus 95 q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~I 126 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMI 126 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677889999999988888888877665433
No 99
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.25 E-value=1.7e+02 Score=22.83 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 337 RKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 337 ~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
..|.+|-|..-.+.++||.|=--||+
T Consensus 37 ~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34555666666677777777777774
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.23 E-value=95 Score=31.04 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=29.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015735 322 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 362 (401)
Q Consensus 322 l~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr 362 (401)
+.+++.++.+-..-+.+|..+|+..-++.+.++.|+..|+.
T Consensus 27 i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 27 IQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445555565667788888888877888888888887764
No 101
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.17 E-value=3.1e+02 Score=24.80 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=41.3
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
++-|-..|+...+..++...+|-...+..|..+|..--++...||-.|+.=|+..
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777888888888888888888888888888888887777643
No 102
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.04 E-value=2.2e+02 Score=29.43 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 015735 306 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 343 (401)
Q Consensus 306 ~~~~~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~ 343 (401)
.++..|-+|+++|+..|..+....++|...|..|+..-
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~ 125 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLW 125 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999988887643
No 103
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.55 E-value=23 Score=36.64 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=5.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 324 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 324 ~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
.|+.+++|+...|.+|.+|+.....|..+||+|+...|+.
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ---------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999877764
No 104
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.48 E-value=2.3e+02 Score=21.65 Aligned_cols=54 Identities=15% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015735 310 KLAKDFEELKLKLNVMD-SQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 364 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~-~k~~Ea~~~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~~ 364 (401)
.+-.-|.+|+.-+-.+. .|++.|. ++.+-.+-=+.-.++++.|++|++.||++.
T Consensus 26 ~in~~f~~Lr~lvP~~~~~k~sK~~-iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQGEKASRAQ-ILDKATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHSGGGTTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHCcCCCCCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 105
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.23 E-value=3.4e+02 Score=22.95 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015735 310 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDML 353 (401)
Q Consensus 310 ~~~~d~~elk~kl~~~~~k~~Ea~~~I~kL~Ee~~~a~~e~~~L 353 (401)
.+.-+++++|.|+.. ...|+.+.|+.|..|-......++.|
T Consensus 14 ~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~El~~lr~~~~~l 54 (111)
T 2v66_B 14 RLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888877744 33455555555554444444433333
No 106
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.16 E-value=1.7e+02 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015735 335 TIRKLMEARKLATREKDMLKHELEVLRRK 363 (401)
Q Consensus 335 ~I~kL~Ee~~~a~~e~~~Lq~El~~lrr~ 363 (401)
.+.+|+++-.+-.+|+++|++|.+.|.-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555544433
Done!