BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015736
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 161/249 (64%), Gaps = 6/249 (2%)
Query: 146 LQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRV 205
+ ++P+ L K V + SL+ F ++ + G PVI+ HWP W+ L+Y++ +
Sbjct: 4 MGLIPDVKLE-KTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEI 61
Query: 206 AGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRN 265
AG RTVPVEVG Y ++W Q L+ ++F+ + N YLAQHQLFDQI EL+
Sbjct: 62 AGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQ 119
Query: 266 DICIPDYCFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSE 323
DI IPDYC +G GE ++NAWFGP GT++PLH DP N L QV+G+KYIRLY S
Sbjct: 120 DISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESG 179
Query: 324 ELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSI 383
LYP+ +L N+SQVD++N D KFPK F CIL GE+L+IP K+WHYVR+L +
Sbjct: 180 ALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDL 239
Query: 384 SFSVSFWWS 392
SFSVSFWWS
Sbjct: 240 SFSVSFWWS 248
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 157/242 (64%), Gaps = 5/242 (2%)
Query: 153 SLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVP 212
S+ K V + SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVP
Sbjct: 1 SMLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVP 59
Query: 213 VEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDY 272
VEVG Y ++W Q L+ ++F+ + N YLAQHQLFDQI EL+ DI IPDY
Sbjct: 60 VEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDY 117
Query: 273 CFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSE 330
C +G GE ++NAWFGP GT++PLH DP N L QV+G+KYIRLY S LYP+
Sbjct: 118 CSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDT 177
Query: 331 TMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFW 390
+L N+SQVD++N D KFPK F CIL GE+L+IP K+WHYVR+L +SFSVSFW
Sbjct: 178 HLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 237
Query: 391 WS 392
WS
Sbjct: 238 WS 239
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 5/229 (2%)
Query: 166 SLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWK 225
SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVPVEVG Y ++W
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWS 68
Query: 226 QELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELR--SL 283
Q L+ ++F+ + N YLAQHQLFDQI EL+ DI IPDYC +G GE ++
Sbjct: 69 QTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITI 126
Query: 284 NAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDN 343
NAWFGP GT++PLH DP N L QV+G+KYIRLY S LYP+ +L N+SQVD++N
Sbjct: 127 NAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVEN 186
Query: 344 IDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 392
D KFPK F CIL GE+L+IP K+WHYVR+L +SFSVSFWWS
Sbjct: 187 PDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 235
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 150/229 (65%), Gaps = 5/229 (2%)
Query: 166 SLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWK 225
SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVPVEVG Y ++W
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCXQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWS 68
Query: 226 QELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELR--SL 283
Q L ++F+ + N YLAQHQLFDQI EL+ DI IPDYC +G GE ++
Sbjct: 69 QTLXTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITI 126
Query: 284 NAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDN 343
NAWFGP GT++PLH DP N L QV G+KYIRLY S LYP+ +L N+SQVD++N
Sbjct: 127 NAWFGPQGTISPLHQDPQQNFLVQVXGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVEN 186
Query: 344 IDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 392
D KFPK F CIL GE+L+IP K+WHYVR+L +SFSVSFWWS
Sbjct: 187 PDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 235
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 29/240 (12%)
Query: 180 PVIITDCMAHWPARTNWNDLDYLKRV--AGDRTVPVEVGKNYLCQDWKQ----------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 61 PVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKXANFQNFKPRS 118
Query: 227 --ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV-------G 276
E F +F+E++Q Q L D + ++ D ++ ++ G
Sbjct: 119 NREEXKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGGKIVXDFLGFNWNWINKQQGKRG 178
Query: 277 GGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN- 335
G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 179 WGQLTSNLLLIGXEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDR 238
Query: 336 SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWWS 392
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 239 QSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPXYWWHHIESLLNGGITITVNFWYK 298
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 46 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 103
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 104 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 163
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN 335
G G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 164 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCD 223
Query: 336 -SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 391
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 224 RQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 283
Query: 392 S 392
Sbjct: 284 K 284
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN 335
G G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCD 237
Query: 336 -SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 391
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 238 RQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
Query: 392 S 392
Sbjct: 298 K 298
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 62 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 119
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 120 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 179
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN 335
G G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 180 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCD 239
Query: 336 -SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 391
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 240 RQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 299
Query: 392 S 392
Sbjct: 300 K 300
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 29/240 (12%)
Query: 180 PVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ----------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 64 PVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 121
Query: 227 --ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV-------G 276
E + F +F+E++Q Q L D + ++ D ++ ++ G
Sbjct: 122 NREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRG 181
Query: 277 GGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN- 335
G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 182 WGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDR 241
Query: 336 SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWWS 392
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 242 QSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 301
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRV--AGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN 335
G G+L S G G VTP H+D N AQ+ G K L+P E LYPY C+
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCD 237
Query: 336 S-SQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 391
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 238 RHSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
Query: 392 S 392
Sbjct: 298 K 298
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 29/241 (12%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN 335
G G+L S G G VTP H+ N AQ+ G K L+P E LYPY C+
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCD 237
Query: 336 -SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 391
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 238 RQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
Query: 392 S 392
Sbjct: 298 K 298
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 29/240 (12%)
Query: 180 PVIITDCMAHWPARTNWNDLDYLKRVAG--DRTVPVEVGKNYLCQDWKQ----------- 226
PV++TD +PA W DL+YL+ G D +V +L D K+
Sbjct: 61 PVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 118
Query: 227 --ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV-------G 276
E + F +F+E++Q Q L D + ++ D ++ ++ G
Sbjct: 119 NREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRG 178
Query: 277 GGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCN- 335
G+L S G G VTP H+ N AQ+ G K L+P E LYPY C+
Sbjct: 179 WGQLTSNLLLIGMEGNVTPAHYAEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDR 238
Query: 336 SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWWS 392
SQVD DN D +FP +++ ++ ++ G++LYIP WWH++ SL I+ +V+FW+
Sbjct: 239 QSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 26/252 (10%)
Query: 159 VVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGK- 217
V + +S E F+ + P+++ + + P + W +DYL +V G + V + V
Sbjct: 31 VPRLEGVSREQFMQHLYPQRKPLVL-EGIDLGPCTSKWT-VDYLSQVGGKKEVKIHVAAV 88
Query: 218 ---NYLCQDWKQELIPFSQFLERIQSNGS-----SASVPTYLAQ---------HQLFDQI 260
+++ +++ +PF Q ++R S YL + Q
Sbjct: 89 AQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQF 148
Query: 261 NELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPAS 320
L+ DI P+ F + S G H+D N+L QV GKK + L+
Sbjct: 149 PLLKGDIKFPE--FFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPR 206
Query: 321 LSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRS 380
++ LY S +++DN D K+P ++C L+ G++L+IP W+H V S
Sbjct: 207 DAQYLYLKG----TKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVIS 262
Query: 381 LSISFSVSFWWS 392
V+ +W
Sbjct: 263 EEFGVGVNIFWK 274
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 22/239 (9%)
Query: 165 LSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDW 224
LS+E F+ Y PV++ + W A+ W L+ LKR R + G++
Sbjct: 54 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT-LERLKRKY--RNQKFKCGEDNDGYSV 110
Query: 225 KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIP-----DYCFVGGGE 279
K ++ + +++E + + + +H + +L D +P D G +
Sbjct: 111 KMKMKYYIEYMESTRDDSPLYIFDSSYGEH---PKRRKLLEDYKVPKFFTDDLFQYAGEK 167
Query: 280 LRSLNAWF--GPAGTVTPLHHDPHHNIL--AQVVGKKYIRLYPASLSEELYPYSETMLCN 335
R WF GP + T +H DP A V G K L+P S EL + N
Sbjct: 168 RRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 227
Query: 336 SSQVDLDNIDETKFPKVR------DLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVS 388
+ + +P+ + + + + + GE +++P WWH V +L + +++
Sbjct: 228 QQDEAITWFN-VIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 22/239 (9%)
Query: 165 LSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDW 224
LS+E F+ Y PV++ + W A+ W L+ LKR R + G++
Sbjct: 55 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT-LERLKRKY--RNQKFKCGEDNDGYSV 111
Query: 225 KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIP-----DYCFVGGGE 279
K + + ++ E + + + +H + +L D +P D G +
Sbjct: 112 KXKXKYYIEYXESTRDDSPLYIFDSSYGEH---PKRRKLLEDYKVPKFFTDDLFQYAGEK 168
Query: 280 LRSLNAWF--GPAGTVTPLHHDPHHNIL--AQVVGKKYIRLYPASLSEELYPYSETMLCN 335
R WF GP + T +H DP A V G K L+P S EL + N
Sbjct: 169 RRPPYRWFVXGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 228
Query: 336 SSQVDLDNIDETKFPKVR------DLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVS 388
+ + +P+ + + + + + GE +++P WWH V +L + +++
Sbjct: 229 QQDEAITWFN-VIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 286
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural
Genomics Consortium Target Pr6
Length = 240
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 142 TAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSP----VIITDCMAHWPARTNWN 197
AKA Q +P ++ +KR++ S EG LSE G +II +CM P RT N
Sbjct: 53 NAKA-QNMPKDNIDA--AIKRAS-SKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIAN 108
Query: 198 DLDYLKRVAGDRTVP 212
Y + G VP
Sbjct: 109 LKSYFNKTQGASIVP 123
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 181 VIITDCMAHWPARTNWNDLDYLKR 204
V+ MAHWP R N DL++ R
Sbjct: 134 VVTVSSMAHWPGRINLEDLNWRSR 157
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 305 LAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILD 363
L+ +GKKY+ LY YP T +C S + LD ++ K R++E C +D
Sbjct: 25 LSDFIGKKYVLLY-------FYPLDFTFVCPSEIIALDKALDS--FKERNVELLGCSVD 74
>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|B Chain B, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|C Chain C, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|D Chain D, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|E Chain E, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|F Chain F, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|G Chain G, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|H Chain H, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|I Chain I, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|J Chain J, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2I81|A Chain A, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|B Chain B, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|C Chain C, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|D Chain D, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|E Chain E, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
Length = 213
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 305 LAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILD 363
L Q +GKKY+ LY YP T +C S + LD + R++E C +D
Sbjct: 46 LTQFIGKKYVLLY-------FYPLDFTFVCPSEIIALDKALDAFHE--RNVELLGCSVD 95
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 292 TVTPLHHDPHHNILAQVVGKKYIRLYPASLS 322
T T D H IL +VVG K L+P SL+
Sbjct: 225 TATFEREDGRHEILKEVVGGKVFELFPDSLA 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,428,196
Number of Sequences: 62578
Number of extensions: 458771
Number of successful extensions: 1259
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 21
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)