Query 015737
Match_columns 401
No_of_seqs 137 out of 1421
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 2.3E-76 5E-81 623.6 38.0 359 25-383 50-408 (600)
2 PTZ00114 Heat shock protein 60 100.0 5.8E-75 1.3E-79 610.8 37.7 359 25-385 8-415 (555)
3 PRK12849 groEL chaperonin GroE 100.0 2E-74 4.3E-79 604.5 39.2 354 30-385 1-402 (542)
4 PRK12850 groEL chaperonin GroE 100.0 2.7E-74 5.9E-79 604.1 38.5 354 30-385 2-403 (544)
5 PRK00013 groEL chaperonin GroE 100.0 4E-74 8.7E-79 602.2 38.3 354 30-385 1-402 (542)
6 PRK12852 groEL chaperonin GroE 100.0 4.9E-74 1.1E-78 602.9 38.9 354 30-385 2-403 (545)
7 TIGR02348 GroEL chaperonin Gro 100.0 6.9E-74 1.5E-78 599.3 38.5 352 32-385 2-401 (524)
8 cd03344 GroEL GroEL_like type 100.0 2.5E-73 5.3E-78 594.4 39.0 352 32-385 1-400 (520)
9 PRK12851 groEL chaperonin GroE 100.0 2.5E-73 5.4E-78 596.5 38.2 354 30-385 2-403 (541)
10 CHL00093 groEL chaperonin GroE 100.0 4.1E-73 8.9E-78 594.1 37.6 354 30-385 1-402 (529)
11 PRK14104 chaperonin GroEL; Pro 100.0 7.5E-72 1.6E-76 585.5 37.9 354 31-386 3-357 (546)
12 KOG0356 Mitochondrial chaperon 100.0 3.7E-66 8.1E-71 518.5 27.1 358 26-386 12-371 (550)
13 TIGR02339 thermosome_arch ther 100.0 7.5E-63 1.6E-67 516.8 33.7 322 33-384 10-392 (519)
14 cd03343 cpn60 cpn60 chaperonin 100.0 1.7E-62 3.6E-67 514.1 32.4 334 33-396 9-412 (517)
15 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6.4E-62 1.4E-66 510.4 32.5 334 40-396 7-413 (527)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 2E-61 4.3E-66 506.7 34.0 317 40-384 26-403 (532)
17 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.4E-61 5.3E-66 506.0 33.6 322 33-384 17-399 (526)
18 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.3E-61 7.1E-66 504.7 33.3 320 40-384 15-391 (522)
19 TIGR02347 chap_CCT_zeta T-comp 100.0 8.5E-61 1.8E-65 501.4 35.0 318 40-385 15-399 (531)
20 TIGR02340 chap_CCT_alpha T-com 100.0 7.3E-61 1.6E-65 503.2 33.9 323 40-385 11-395 (536)
21 TIGR02344 chap_CCT_gamma T-com 100.0 6.6E-61 1.4E-65 502.7 32.3 318 40-385 15-394 (525)
22 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.9E-61 6.2E-66 500.5 29.2 312 40-385 11-356 (484)
23 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.6E-60 3.5E-65 498.9 33.5 319 40-385 7-389 (515)
24 TIGR02345 chap_CCT_eta T-compl 100.0 3.9E-60 8.4E-65 496.3 33.4 324 34-385 13-393 (522)
25 TIGR02342 chap_CCT_delta T-com 100.0 6.3E-60 1.4E-64 494.2 34.0 319 40-385 8-390 (517)
26 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.8E-59 6E-64 489.4 35.6 317 40-385 12-387 (517)
27 PTZ00212 T-complex protein 1 s 100.0 4.3E-59 9.4E-64 489.4 34.2 317 40-385 21-399 (533)
28 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.1E-59 2.3E-64 488.5 29.1 301 40-385 15-353 (480)
29 TIGR02346 chap_CCT_theta T-com 100.0 2.5E-59 5.5E-64 490.7 28.8 316 40-385 17-391 (531)
30 cd00309 chaperonin_type_I_II c 100.0 2.6E-58 5.5E-63 476.7 33.3 305 33-384 2-338 (464)
31 COG0459 GroL Chaperonin GroEL 100.0 2.5E-58 5.4E-63 478.6 31.7 326 30-385 2-387 (524)
32 KOG0361 Chaperonin complex com 100.0 2.3E-59 5.1E-64 451.0 22.1 320 40-384 19-395 (543)
33 TIGR02341 chap_CCT_beta T-comp 100.0 1.1E-57 2.4E-62 477.1 35.3 316 40-384 13-387 (519)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.5E-57 3.2E-62 471.5 31.1 302 40-385 7-343 (472)
35 KOG0358 Chaperonin complex com 100.0 3.1E-57 6.8E-62 435.6 19.1 323 40-385 25-407 (534)
36 KOG0363 Chaperonin complex com 100.0 3.3E-54 7.2E-59 413.1 21.6 318 40-386 17-393 (527)
37 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.6E-53 7.9E-58 439.3 27.6 317 53-397 1-381 (485)
38 KOG0360 Chaperonin complex com 100.0 2.1E-51 4.5E-56 404.5 17.6 323 40-385 18-401 (545)
39 KOG0362 Chaperonin complex com 100.0 1.8E-49 4E-54 393.1 28.1 316 39-384 24-393 (537)
40 KOG0364 Chaperonin complex com 100.0 2.3E-49 5.1E-54 386.9 17.1 315 41-383 19-392 (527)
41 KOG0359 Chaperonin complex com 100.0 9.8E-44 2.1E-48 347.1 10.6 327 41-395 17-411 (520)
42 KOG0357 Chaperonin complex com 100.0 1.8E-35 3.8E-40 281.8 11.7 232 31-385 20-268 (400)
43 cd03333 chaperonin_like chaper 99.9 2.7E-25 5.9E-30 206.8 17.8 172 172-384 3-202 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 2E-24 4.3E-29 207.8 18.7 181 183-386 19-248 (261)
45 KOG0230 Phosphatidylinositol-4 99.3 3.7E-11 8.1E-16 133.4 13.4 187 183-393 333-576 (1598)
46 COG0459 GroL Chaperonin GroEL 96.7 0.00016 3.4E-09 76.4 -3.4 95 266-365 237-331 (524)
47 PRK14104 chaperonin GroEL; Pro 57.7 14 0.0003 39.6 4.7 30 356-385 374-403 (546)
48 PLN03167 Chaperonin-60 beta su 37.2 43 0.00093 36.4 4.4 27 358-384 430-456 (600)
49 PRK13600 putative ribosomal pr 34.0 1.8E+02 0.0039 23.1 6.4 55 264-328 20-74 (84)
50 TIGR03659 IsdE heme ABC transp 31.8 79 0.0017 30.4 5.0 58 266-328 84-141 (289)
51 PF01113 DapB_N: Dihydrodipico 30.9 1.4E+02 0.003 25.1 5.8 42 250-293 70-111 (124)
52 COG2129 Predicted phosphoester 30.2 4.8E+02 0.01 24.8 9.6 66 258-327 15-88 (226)
53 PF12554 MOZART1: Mitotic-spin 29.4 69 0.0015 22.8 2.9 26 125-150 19-44 (48)
54 PF13788 DUF4180: Domain of un 29.0 2.3E+02 0.0051 23.9 6.6 51 246-296 5-70 (113)
55 cd01143 YvrC Periplasmic bindi 28.6 1.1E+02 0.0025 26.9 5.2 58 266-328 53-111 (195)
56 TIGR01101 V_ATP_synt_F vacuola 28.5 1.7E+02 0.0038 24.6 5.8 67 258-327 44-115 (115)
57 COG4148 ModC ABC-type molybdat 27.8 72 0.0016 31.6 3.7 44 243-286 143-192 (352)
58 PRK13601 putative L7Ae-like ri 23.0 3.3E+02 0.0071 21.5 6.1 53 265-328 16-69 (82)
59 cd01141 TroA_d Periplasmic bin 22.9 1.8E+02 0.0039 25.6 5.4 55 266-326 62-119 (186)
60 PF01230 HIT: HIT domain; Int 22.8 1.1E+02 0.0023 24.3 3.4 33 40-72 45-77 (98)
61 TIGR01166 cbiO cobalt transpor 22.8 83 0.0018 28.1 3.1 41 244-284 143-188 (190)
62 TIGR02345 chap_CCT_eta T-compl 22.4 28 0.00061 37.0 -0.1 59 273-332 247-314 (522)
63 PF01497 Peripla_BP_2: Peripla 22.3 2.2E+02 0.0049 25.8 6.0 59 266-328 53-112 (238)
64 COG1712 Predicted dinucleotide 21.4 3.3E+02 0.0072 26.1 6.7 110 258-393 69-192 (255)
65 PF08708 PriCT_1: Primase C te 20.3 2.8E+02 0.006 20.6 5.1 52 128-182 15-67 (71)
66 cd03232 ABC_PDR_domain2 The pl 20.1 1.5E+02 0.0032 26.6 4.2 42 244-285 124-170 (192)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.3e-76 Score=623.64 Aligned_cols=359 Identities=70% Similarity=1.042 Sum_probs=346.0
Q ss_pred CCccccceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHH
Q 015737 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (401)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll 104 (401)
.+.+.|+|++.||.+-+||+.+++||+.++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|+
T Consensus 50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll 129 (600)
T PLN03167 50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV 129 (600)
T ss_pred CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence 44567799999993117999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchhhhHhhhhhccCCc
Q 015737 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184 (401)
Q Consensus 105 ~~~a~~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~ 184 (401)
+++|++||+++||||||++||+++||+++.++++.|+||..|++||++|.+.+++.|++++.|+++.+|.++|++|++++
T Consensus 130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~ 209 (600)
T PLN03167 130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN 209 (600)
T ss_pred HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999997668999999999999
Q ss_pred hhHHHHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHH
Q 015737 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK 264 (401)
Q Consensus 185 ~~la~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~ 264 (401)
+.|+++++||+.+++++|.|++++|++++|++++++|++|+++|.||||++++++|+++++||+|+++|++|++++++.+
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999988999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCC
Q 015737 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE 344 (401)
Q Consensus 265 ~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~ 344 (401)
++|++.+.|+|+||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|+++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred CceeeeEEEEEcCeEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737 345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383 (401)
Q Consensus 345 ~LG~~~~v~v~~~~~tIi~~g~~~~~l~e~~~~l~~~l~ 383 (401)
+||+|++|+++++.|+|+.+.++++.+++++..|+..++
T Consensus 370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~ 408 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIE 408 (600)
T ss_pred HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999998874
No 2
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.8e-75 Score=610.82 Aligned_cols=359 Identities=45% Similarity=0.757 Sum_probs=342.9
Q ss_pred CCccccceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHH
Q 015737 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (401)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll 104 (401)
+..++|.+++.|+ +++|..|+++|..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||.+|+||+|+
T Consensus 8 ~~~~~~~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll 85 (555)
T PTZ00114 8 SRYRFKGKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLI 85 (555)
T ss_pred hHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHH
Confidence 3457788889999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCC
Q 015737 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGN 183 (401)
Q Consensus 105 ~~~a~~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~ 183 (401)
+++|++||+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|+||+++
T Consensus 86 ~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~ 165 (555)
T PTZ00114 86 RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG 165 (555)
T ss_pred HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999766 899999999999
Q ss_pred chhHHHHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHH
Q 015737 184 DYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMF 263 (401)
Q Consensus 184 ~~~la~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~ 263 (401)
++.+++++++|+..++++|.|.+++|++++|++++++|++|+++|.+|||+++.++|+++++||+|+++|++|++++++.
T Consensus 166 ~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~ 245 (555)
T PTZ00114 166 DVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSIL 245 (555)
T ss_pred hHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHH
Confidence 99999999999999999899999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecC-CCCcccCCC
Q 015737 264 KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE-MGLTLDKAG 342 (401)
Q Consensus 264 ~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~-~g~~~~~~~ 342 (401)
++++++.+.|+||||++++|+++|+++|..|+++|+++|+|||+|++|++++++|+|||++|||+++++. .|..+++++
T Consensus 246 ~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~ 325 (555)
T PTZ00114 246 PILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFD 325 (555)
T ss_pred HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 677788999
Q ss_pred CCCceeeeEEEEEc-----------------------------------------------CeEEEEccCCCHHHHHHHH
Q 015737 343 KEVLGTAIKVVITK-----------------------------------------------DSTLIVTDGSTRAAVEKRI 375 (401)
Q Consensus 343 ~~~LG~~~~v~v~~-----------------------------------------------~~~tIi~~g~~~~~l~e~~ 375 (401)
+++||+|++|++++ ..+||++||+++..++|++
T Consensus 326 ~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~ 405 (555)
T PTZ00114 326 PSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKK 405 (555)
T ss_pred HHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHH
Confidence 99999999998753 3779999999999999999
Q ss_pred HHHHHHHHHH
Q 015737 376 SEIRSLAEVV 385 (401)
Q Consensus 376 ~~l~~~l~~~ 385 (401)
|.++|++..+
T Consensus 406 r~i~Dal~~~ 415 (555)
T PTZ00114 406 DRIEDALNAT 415 (555)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-74 Score=604.48 Aligned_cols=354 Identities=46% Similarity=0.780 Sum_probs=339.6
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|+|.|.|| ++++..|++++.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 46899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+||+++||||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766 89999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~ 268 (401)
+++++|+..++++|.+.++.|++++|++++++|++|+++|.+|||.++.++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999888888889999998669999999999999999999888999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (401)
Q Consensus 269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~ 348 (401)
+.+.|+||||++++|+++|+++|+.|+++|.++|++||+|+++++++++|+|||++|||++++++.+.+++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred eeEEEEEc-----------------------------------------------CeEEEEccCCCHHHHHHHHHHHHHH
Q 015737 349 AIKVVITK-----------------------------------------------DSTLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 349 ~~~v~v~~-----------------------------------------------~~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
|+.|++++ ..+||++||+++..++|++|.++|+
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99988752 2679999999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
+..+
T Consensus 399 l~~~ 402 (542)
T PRK12849 399 LNAT 402 (542)
T ss_pred HHHH
Confidence 9743
No 4
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.7e-74 Score=604.08 Aligned_cols=354 Identities=46% Similarity=0.794 Sum_probs=337.6
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|.|+++|| +++|+.+++||++++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 67999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+||+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++++++. +|.++|++|+++++.++
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999765 89999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~ 268 (401)
++++||+..++++|.|.++.+....+++++++|++|+++|.+|||.++.++++.+++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888888776655666669999999999999999999888999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (401)
Q Consensus 269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~ 348 (401)
+.+.|+||||++++|+|+++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEEcC-----------------------------------------------eEEEEccCCCHHHHHHHHHHHHHH
Q 015737 349 AIKVVITKD-----------------------------------------------STLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 349 ~~~v~v~~~-----------------------------------------------~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
|++|+++++ .+||++||+++..++|++|.++|+
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 999987631 589999999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
|..+
T Consensus 400 l~~~ 403 (544)
T PRK12850 400 LHAT 403 (544)
T ss_pred HHHH
Confidence 9743
No 5
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-74 Score=602.17 Aligned_cols=354 Identities=49% Similarity=0.805 Sum_probs=335.2
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|+|++.|| +++|..|++++++++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 56899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|.||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766 89999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~ 268 (401)
+++++|+..++++|.|.++.+....|.+++++|++|+++|.+|||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888777765444444449999999999999999999998999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (401)
Q Consensus 269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~ 348 (401)
+.+.|+||||++++|+++++++|+.|+++|+++|++||+|+||+.++++|+|||++|||++++++.|.+++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred eeEEEEEc----------C-------------------------------------eEEEEccCCCHHHHHHHHHHHHHH
Q 015737 349 AIKVVITK----------D-------------------------------------STLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 349 ~~~v~v~~----------~-------------------------------------~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
|+.|++++ + .+||++||+++..++|++|.++|+
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99998762 1 578999999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
|..+
T Consensus 399 l~~v 402 (542)
T PRK00013 399 LHAT 402 (542)
T ss_pred HHHH
Confidence 9743
No 6
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.9e-74 Score=602.95 Aligned_cols=354 Identities=46% Similarity=0.793 Sum_probs=338.4
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|+|+|.|| +++|+.+++|+.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 57999999 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+||+++||||||+++||++||+++.+|+++|+||..|++||++|.+.+++.|+++++|+++. ++.++|++|+++++.++
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766 89999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~ 268 (401)
+++++|+..++++|.|+++.|++..+.+++++|+.|+++|.+|||++++++|+.+++||+|+++|++|++++++++++++
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999999989988755559999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (401)
Q Consensus 269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~ 348 (401)
+.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|.+++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEEc-----------------------------------------------CeEEEEccCCCHHHHHHHHHHHHHH
Q 015737 349 AIKVVITK-----------------------------------------------DSTLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 349 ~~~v~v~~-----------------------------------------------~~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
|+.|++++ ..+||++||+++..++|++|.++|+
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999863 2378999999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
+..+
T Consensus 400 l~a~ 403 (545)
T PRK12852 400 LNAT 403 (545)
T ss_pred HHHH
Confidence 9743
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=6.9e-74 Score=599.32 Aligned_cols=352 Identities=47% Similarity=0.786 Sum_probs=337.0
Q ss_pred eeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhcc
Q 015737 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (401)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 111 (401)
|+++|| +++|+.|++|+++++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 679999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHHHH
Q 015737 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (401)
Q Consensus 112 d~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la~l 190 (401)
|+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|+++++.++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999766 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHHHH
Q 015737 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (401)
Q Consensus 191 i~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~i~ 270 (401)
+++|+..++++|.|.++.|+..+|++++++|++|+++|.+|||.+++++++++++||+|+++|++|++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999988888888898887766999999999999999999998999999999999999999999999999999999
Q ss_pred HcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeee
Q 015737 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (401)
Q Consensus 271 ~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~ 350 (401)
+.|+||||++++|+++|+++|+.|+++|+++|++||+|++|+.++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred EEEEEc-------C----------------------------------------eEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737 351 KVVITK-------D----------------------------------------STLIVTDGSTRAAVEKRISEIRSLAE 383 (401)
Q Consensus 351 ~v~v~~-------~----------------------------------------~~tIi~~g~~~~~l~e~~~~l~~~l~ 383 (401)
.|++++ . .+||++||+++..++|++|.++|++.
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 998762 1 47799999999999999999999997
Q ss_pred HH
Q 015737 384 VV 385 (401)
Q Consensus 384 ~~ 385 (401)
.+
T Consensus 400 ~~ 401 (524)
T TIGR02348 400 AT 401 (524)
T ss_pred HH
Confidence 43
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-73 Score=594.36 Aligned_cols=352 Identities=49% Similarity=0.807 Sum_probs=337.7
Q ss_pred eeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhcc
Q 015737 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (401)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 111 (401)
|++.|| ++++..|+++|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+++||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 468899 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHHHH
Q 015737 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (401)
Q Consensus 112 d~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la~l 190 (401)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. ++.++|+||+++++.++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999766 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHHHH
Q 015737 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (401)
Q Consensus 191 i~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~i~ 270 (401)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|||..++++|+++++||+|+++|++|++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999888889999999999999999999999999999999
Q ss_pred HcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeee
Q 015737 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (401)
Q Consensus 271 ~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~ 350 (401)
+.|+||||++++|+++++++|..|+++|.++|++||+|++|++++++|+|||++|||++++++.|.+++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEEc-----------------------------------------------CeEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737 351 KVVITK-----------------------------------------------DSTLIVTDGSTRAAVEKRISEIRSLAE 383 (401)
Q Consensus 351 ~v~v~~-----------------------------------------------~~~tIi~~g~~~~~l~e~~~~l~~~l~ 383 (401)
.|++++ ..+||++||+++..++|++|.++|++.
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 998751 378999999999999999999999997
Q ss_pred HH
Q 015737 384 VV 385 (401)
Q Consensus 384 ~~ 385 (401)
.+
T Consensus 399 ~~ 400 (520)
T cd03344 399 AT 400 (520)
T ss_pred HH
Confidence 43
No 9
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-73 Score=596.48 Aligned_cols=354 Identities=47% Similarity=0.788 Sum_probs=334.3
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|+|++.|| +++++.+++++++++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 67899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+||+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|+++++.++
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766 79999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~ 268 (401)
+++++|+..++++|.+.++.+....+++++++|++|+++|.+|||.++.++|+++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888777655444444459999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (401)
Q Consensus 269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~ 348 (401)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEEc----------C-------------------------------------eEEEEccCCCHHHHHHHHHHHHHH
Q 015737 349 AIKVVITK----------D-------------------------------------STLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 349 ~~~v~v~~----------~-------------------------------------~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
|+.|++++ + .+||++||+++..++|++|.++|+
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99988762 1 568999999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
|..+
T Consensus 400 l~a~ 403 (541)
T PRK12851 400 LHAT 403 (541)
T ss_pred HHHH
Confidence 9743
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4.1e-73 Score=594.10 Aligned_cols=354 Identities=47% Similarity=0.805 Sum_probs=335.6
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
|.|+|.|| ++||+.+++||..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++|++|++++|.
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 57899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la 188 (401)
+|++++||||||++||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.++|++|+++++.++
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766 89999999999999999
Q ss_pred HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCH-HHHHHHHH
Q 015737 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNP-KDMFKILD 267 (401)
Q Consensus 189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~-~~i~~~le 267 (401)
+++++|+..++++|.|+++.|+..++.+++++|+.|+++|.+|||++++++|+.+++||+|+++|++|+.. ++++++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999889888877766666669999999999999999999988999999999999999999987 78999999
Q ss_pred HHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCce
Q 015737 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG 347 (401)
Q Consensus 268 ~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG 347 (401)
++.+.|+|+||++++|+++++++|+.|+.+|.++|+|||+|++++.++++|+|||++|||++++++.|.+++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred eeeEEEEEc----------------------------------------------CeEEEEccCCCHHHHHHHHHHHHHH
Q 015737 348 TAIKVVITK----------------------------------------------DSTLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 348 ~~~~v~v~~----------------------------------------------~~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
+|++|++++ ..+||++||+++..++|++|.++|+
T Consensus 319 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DA 398 (529)
T CHL00093 319 QARRIIVTKDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDA 398 (529)
T ss_pred cceEEEEecCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHH
Confidence 999998642 2566888999999999999999999
Q ss_pred HHHH
Q 015737 382 AEVV 385 (401)
Q Consensus 382 l~~~ 385 (401)
+..+
T Consensus 399 l~a~ 402 (529)
T CHL00093 399 INAT 402 (529)
T ss_pred HHHH
Confidence 9743
No 11
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=7.5e-72 Score=585.51 Aligned_cols=354 Identities=46% Similarity=0.786 Sum_probs=340.4
Q ss_pred ceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhc
Q 015737 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (401)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 110 (401)
+|++.|| +++|+.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|++++|.+++||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 4789999 79999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred cccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHHH
Q 015737 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGK 189 (401)
Q Consensus 111 qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la~ 189 (401)
||+++||||||+++||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. ++.++|++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999766 799999999999999999
Q ss_pred HHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHHH
Q 015737 190 MISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269 (401)
Q Consensus 190 li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~i 269 (401)
++++|+..++++|.|.++.+++.+|++++++|++|+++|.||||+++++.++.++++|+|+++|.+++++++++++++++
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999999888888766699999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceee
Q 015737 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA 349 (401)
Q Consensus 270 ~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~ 349 (401)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|.+++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred eEEEEEcCeEEEEccCCCHHHHHHHHHHHHHHHHHHh
Q 015737 350 IKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVL 386 (401)
Q Consensus 350 ~~v~v~~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~~ 386 (401)
++|+++++.++++.+.++.+.+.+|++.|+.+++++.
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~ 357 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETT 357 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999878889999999999999998754
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-66 Score=518.46 Aligned_cols=358 Identities=46% Similarity=0.755 Sum_probs=348.5
Q ss_pred CccccceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHH
Q 015737 26 VPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVR 105 (401)
Q Consensus 26 ~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~ 105 (401)
..| +.|+|.|| .++|...++|+..+||+|.+|+||+|||++|.+.+|.|.|||||.|+++++++.++.+|+||++++
T Consensus 12 ~~r-~ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq 88 (550)
T KOG0356|consen 12 CVR-YAKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQ 88 (550)
T ss_pred ccc-cccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHH
Confidence 345 79999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCc
Q 015737 106 QAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGND 184 (401)
Q Consensus 106 ~~a~~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~ 184 (401)
+++.+.++.+||||||+++|++++..++.+-+.+|.+|.++++|+.++.+.+.+.|++++++++.. ++.+||.+|+|+|
T Consensus 89 ~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD 168 (550)
T KOG0356|consen 89 DVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGD 168 (550)
T ss_pred HHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999977 9999999999999
Q ss_pred hhHHHHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHH
Q 015737 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK 264 (401)
Q Consensus 185 ~~la~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~ 264 (401)
..+++++.+|+.++|++|+|+++.|.+++|++++++||.|++||.+|||+++++...+++++|++++.+.+|+++++|.|
T Consensus 169 ~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp 248 (550)
T KOG0356|consen 169 KEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVP 248 (550)
T ss_pred HHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCC-CcccCCCC
Q 015737 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG-LTLDKAGK 343 (401)
Q Consensus 265 ~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g-~~~~~~~~ 343 (401)
.+|...+...|++|++++|+.++|++|+.|++++.++|+|||+|+||+.++..+.||+.+|||+++.++.+ +++++.+.
T Consensus 249 ~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~ 328 (550)
T KOG0356|consen 249 ALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKL 328 (550)
T ss_pred HHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred CCceeeeEEEEEcCeEEEEccCCCHHHHHHHHHHHHHHHHHHh
Q 015737 344 EVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVL 386 (401)
Q Consensus 344 ~~LG~~~~v~v~~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~~ 386 (401)
++||.|+++.++++.++++.++++++.+++|++++++.++.+.
T Consensus 329 ~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~ 371 (550)
T KOG0356|consen 329 EDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETT 371 (550)
T ss_pred hhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998776443
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.5e-63 Score=516.79 Aligned_cols=322 Identities=25% Similarity=0.393 Sum_probs=294.6
Q ss_pred eeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccc
Q 015737 33 EVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112 (401)
Q Consensus 33 ~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 112 (401)
+-..| .+++..|+++|.+++++++|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||
T Consensus 10 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd 83 (519)
T TIGR02339 10 QRTKG--RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 83 (519)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHH
Confidence 34455 789999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch--h-hhHhhhhhccCCc-----
Q 015737 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGND----- 184 (401)
Q Consensus 113 ~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~~----- 184 (401)
+++||||||+++|+++||+++.+++++|+||+.|++||++|.+.++++|++++++++. . .|.++|+|+++++
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~ 163 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEV 163 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccch
Confidence 9999999999999999999999999999999999999999999999999999999864 3 7999999999865
Q ss_pred --hhHHHHHHHHHHhhcc---CCc---------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEE
Q 015737 185 --YTVGKMISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (401)
Q Consensus 185 --~~la~li~~Av~~v~~---~g~---------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Il 250 (401)
+.|++++++|+..+++ +|. |...+|++++|+ ++++|++|+++|.+| +|+++++||+|+
T Consensus 164 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIl 235 (519)
T TIGR02339 164 TKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIA 235 (519)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEE
Confidence 8899999999999985 453 334799999999 999999999999987 488999999999
Q ss_pred Eeccc-------------CCCHHHHHHHHH-----------HHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEe
Q 015737 251 LVDKK-------------IKNPKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306 (401)
Q Consensus 251 l~d~~-------------I~~~~~i~~~le-----------~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk 306 (401)
+++++ +++++++.++++ ++++.|+||||++++|++.++++|..++ +++|
T Consensus 236 ll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v- 308 (519)
T TIGR02339 236 LLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAV- 308 (519)
T ss_pred EEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEE-
Confidence 99997 678888877765 8899999999999999999999998775 4666
Q ss_pred cCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHH
Q 015737 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAV 371 (401)
Q Consensus 307 ~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l 371 (401)
+++++++|+|||++|||+++++ +++++++.||+|+.|++. +..+||++||+++..+
T Consensus 309 ----~~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l 379 (519)
T TIGR02339 309 ----RRVKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVV 379 (519)
T ss_pred ----ecCCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHH
Confidence 4678999999999999999994 888888999999998874 4678999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015737 372 EKRISEIRSLAEV 384 (401)
Q Consensus 372 ~e~~~~l~~~l~~ 384 (401)
+|.+|.++|+|..
T Consensus 380 ~E~~r~i~DAl~~ 392 (519)
T TIGR02339 380 DELERSIQDALHV 392 (519)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999973
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.7e-62 Score=514.15 Aligned_cols=334 Identities=25% Similarity=0.379 Sum_probs=300.7
Q ss_pred eeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccc
Q 015737 33 EVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112 (401)
Q Consensus 33 ~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 112 (401)
+..+| ++++..|+++|.+++++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 9 ~~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 9 QRTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 34556 789999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc--hh-hhHhhhhhccCCc-----
Q 015737 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND----- 184 (401)
Q Consensus 113 ~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~~----- 184 (401)
+++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++.+++ +. .+.++|++|++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999986 33 7999999999875
Q ss_pred -hhHHHHHHHHHHhhccCCc---------EEe--eCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEe
Q 015737 185 -YTVGKMISDALQQVGRNGV---------VTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLV 252 (401)
Q Consensus 185 -~~la~li~~Av~~v~~~g~---------I~i--~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~ 252 (401)
+.+++++++|+.++++++. |++ .+|++++|| ++++|++|+++|.+|+ |++.++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEE
Confidence 8999999999999976532 554 799999999 9999999999999986 6788899999999
Q ss_pred ccc-------------CCCHHHHHHHH-----------HHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecC
Q 015737 253 DKK-------------IKNPKDMFKIL-----------DSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAP 308 (401)
Q Consensus 253 d~~-------------I~~~~~i~~~l-----------e~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p 308 (401)
+++ +++++++.+++ +++++.|+||||++++|++.++++|.+++ +++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE--
Confidence 998 57888777654 48899999999999999999999998765 46764
Q ss_pred CccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHH
Q 015737 309 AFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEK 373 (401)
Q Consensus 309 ~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e 373 (401)
++++++|+|||++|||+++++ ++++++++||+|+.|++. +..+||++||+++..++|
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e 378 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDE 378 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHH
Confidence 678999999999999999994 888999999999998865 357899999999999999
Q ss_pred HHHHHHHHHHHHh-----------cccceeeehh
Q 015737 374 RISEIRSLAEVVL-----------LVSFYIVLVH 396 (401)
Q Consensus 374 ~~~~l~~~l~~~~-----------~~~~~~~~~~ 396 (401)
+++.++|+|..+- .|.+|..+++
T Consensus 379 ~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~ 412 (517)
T cd03343 379 LERALEDALRVVADALEDGKVVAGGGAVEIELAK 412 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHH
Confidence 9999999997332 5556665554
No 15
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.4e-62 Score=510.45 Aligned_cols=334 Identities=22% Similarity=0.310 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
+++|..|++||.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhc-cccccc--hh-hhHhhhhhccCC------chhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVE--DH-ELADVAAVSAGN------DYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~--~~-~l~~va~ts~~~------~~~la~ 189 (401)
||++||+++||+++.+|+++|+||+.|++||++|.+.+++.|++ ++++++ +. .|.++|+|++++ .+.+++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899986 44 799999999873 489999
Q ss_pred HHHHHHHhhcc---CCc---------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC
Q 015737 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (401)
Q Consensus 190 li~~Av~~v~~---~g~---------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~ 257 (401)
++++|+..++. +|. |.+.+|++++|+ ++++|++|+++|.+| +|+++++||+|++++++|+
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 335689999999 999999999999887 5899999999999999864
Q ss_pred C-------------HHHH-----------HHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 258 N-------------PKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 258 ~-------------~~~i-----------~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
. ++++ .++++++.+.|+||||++++|++.++++|..++ |+++ +++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v-----~~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAV-----RRV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEE-----EeC
Confidence 3 2333 345778889999999999999999999999985 5776 467
Q ss_pred ccccHHHHHHHhCCeEEecCCCCc-ccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISE 377 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~~-~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~ 377 (401)
++++|+|||++|||+++++..+++ .+++++++||+|+.|++. +..|||++||++...++|.+|.
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~ 383 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERS 383 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHH
Confidence 899999999999999999754432 244566789999999843 4679999999999999999999
Q ss_pred HHHHHHHHh-----------cccceeeehh
Q 015737 378 IRSLAEVVL-----------LVSFYIVLVH 396 (401)
Q Consensus 378 l~~~l~~~~-----------~~~~~~~~~~ 396 (401)
++|++..+- .|.+|..+++
T Consensus 384 i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~ 413 (527)
T cd03335 384 LHDALCVVKRTLESNSVVPGGGAVETALSI 413 (527)
T ss_pred HHHHHHHHHHHhhCCCEeeCCCHHHHHHHH
Confidence 999997332 5556665544
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-61 Score=506.74 Aligned_cols=317 Identities=27% Similarity=0.427 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
+++++.|+++|.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch----h-hhHhhhhhccCC------chhHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN------DYTVG 188 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~------~~~la 188 (401)
||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++. . .|.++|+|++++ .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998743 2 799999999875 47899
Q ss_pred HHHHHHHHhhcc-C-C-----c--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc----
Q 015737 189 KMISDALQQVGR-N-G-----V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK---- 255 (401)
Q Consensus 189 ~li~~Av~~v~~-~-g-----~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~---- 255 (401)
+++++|+..+.. + + . |.+.+|++++|+ ++++|++|+++|.+|+ |++.++||+|++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeecccc
Confidence 999999998853 1 1 2 445699999999 9999999999999986 7788899999999874
Q ss_pred ---------CCCHHHH-----------HHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccc
Q 015737 256 ---------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (401)
Q Consensus 256 ---------I~~~~~i-----------~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~ 315 (401)
+++++|+ .++++++++.|+|||||+++|++.++++|..|++ .+|| ++++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i------~~v~-----~~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL------PAVR-----WVGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc------EEEE-----cCCH
Confidence 4667766 5678899999999999999999999999999974 6775 4567
Q ss_pred ccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE-----------------cCeEEEEccCCCHHHHHHHHHHH
Q 015737 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----------------KDSTLIVTDGSTRAAVEKRISEI 378 (401)
Q Consensus 316 ~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~-----------------~~~~tIi~~g~~~~~l~e~~~~l 378 (401)
++|+|||++|||+++++ ++++++++||+|++|++. +..+||++||+++..++|.+|.+
T Consensus 323 ~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l 397 (532)
T TIGR02343 323 HELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSI 397 (532)
T ss_pred HHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 88999999999999994 889999999999988721 45789999999999999999999
Q ss_pred HHHHHH
Q 015737 379 RSLAEV 384 (401)
Q Consensus 379 ~~~l~~ 384 (401)
+|+|..
T Consensus 398 ~DAl~~ 403 (532)
T TIGR02343 398 HDALCV 403 (532)
T ss_pred HHHHHH
Confidence 999973
No 17
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-61 Score=505.97 Aligned_cols=322 Identities=24% Similarity=0.374 Sum_probs=290.2
Q ss_pred eeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccc
Q 015737 33 EVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112 (401)
Q Consensus 33 ~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 112 (401)
+..+| +++++.|+++|.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 17 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~ 90 (526)
T cd03339 17 KRLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90 (526)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhh
Confidence 47778 789999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch----h-hhHhhhhhccCC----
Q 015737 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN---- 183 (401)
Q Consensus 113 ~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~---- 183 (401)
+++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.+++.|++++++++. . .|.++|+||+++
T Consensus 91 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999998852 3 799999999875
Q ss_pred --chhHHHHHHHHHHhhccC-------Cc--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEe
Q 015737 184 --DYTVGKMISDALQQVGRN-------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLV 252 (401)
Q Consensus 184 --~~~la~li~~Av~~v~~~-------g~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~ 252 (401)
.+.|++++++|+..+... .. |.+.+|++++|| ++++|++|+++|.+|+ |++.++||+|+++
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~-------m~~~~~n~kI~ll 242 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQ-------MPKEVKDAKIAIL 242 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCC-------CCceecCCCEEEE
Confidence 378999999999988531 12 445699999999 9999999999999986 6778889999999
Q ss_pred ccc-------------CCCHHH-----------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecC
Q 015737 253 DKK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAP 308 (401)
Q Consensus 253 d~~-------------I~~~~~-----------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p 308 (401)
+++ ++++++ +.++++++++.|+|+||++++|++.++++|..|++ +|||+
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I------~av~~- 315 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGL------PAVRW- 315 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC------EEEEe-
Confidence 874 456666 55668899999999999999999999999999874 67754
Q ss_pred CccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE-----------------cCeEEEEccCCCHHHH
Q 015737 309 AFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----------------KDSTLIVTDGSTRAAV 371 (401)
Q Consensus 309 ~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~-----------------~~~~tIi~~g~~~~~l 371 (401)
+++++|+|||++|||++++ +++++++++||+|+.|++. +..+||++||+++..+
T Consensus 316 ----v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l 386 (526)
T cd03339 316 ----VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMII 386 (526)
T ss_pred ----CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHH
Confidence 5678899999999999999 4889999999999998731 3568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015737 372 EKRISEIRSLAEV 384 (401)
Q Consensus 372 ~e~~~~l~~~l~~ 384 (401)
+|.+|.++|+|..
T Consensus 387 ~E~er~l~DAl~~ 399 (526)
T cd03339 387 EEAKRSLHDALCV 399 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999973
No 18
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-61 Score=504.72 Aligned_cols=320 Identities=22% Similarity=0.362 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
.+++..|+.+|.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch------h-hhHhhhhhccC------Cchh
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED------H-ELADVAAVSAG------NDYT 186 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~------~-~l~~va~ts~~------~~~~ 186 (401)
||+++|+++||+++.+++++|+||+.|++||++|.+.+++.|+++++++++ . .|.++|+|+++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999987 4689
Q ss_pred HHHHHHHHHHhhccCC---c--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC-----
Q 015737 187 VGKMISDALQQVGRNG---V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI----- 256 (401)
Q Consensus 187 la~li~~Av~~v~~~g---~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I----- 256 (401)
|++++++|+..+++++ . |...+|++++|+ ++++|++|+++|.+|+|. +|++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 3 334589999999 899999999999999764 467889999999999874
Q ss_pred --------CCHHH-----------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccccc
Q 015737 257 --------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (401)
Q Consensus 257 --------~~~~~-----------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~ 317 (401)
+++++ +.+.++++++.|+++|+++++|+|.++++|..+++ +++ +++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I------~~~-----~~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDI------FCA-----GRVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCc------EEE-----EeCCHHH
Confidence 45554 34457788899999999999999999999998864 665 5678999
Q ss_pred HHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHH
Q 015737 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLA 382 (401)
Q Consensus 318 Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l 382 (401)
|+|||++|||+++++ ++++++++||+|+.|++. +..+||++||++...++|.+|.++|++
T Consensus 315 l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal 389 (522)
T cd03340 315 LKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAI 389 (522)
T ss_pred HHHHHHHHCCEEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999994 888999999999999842 578999999999999999999999999
Q ss_pred HH
Q 015737 383 EV 384 (401)
Q Consensus 383 ~~ 384 (401)
..
T Consensus 390 ~~ 391 (522)
T cd03340 390 MI 391 (522)
T ss_pred HH
Confidence 73
No 19
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.5e-61 Score=501.39 Aligned_cols=318 Identities=22% Similarity=0.349 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++++..|+.+|.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcccccc---chh-hhHhhhhhccCC------chhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV---EDH-ELADVAAVSAGN------DYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v---~~~-~l~~va~ts~~~------~~~la~ 189 (401)
||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++++ .+. .|.++|+|++++ +++|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999764 233 799999999875 789999
Q ss_pred HHHHHHHhhccCCc------EE--eeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC----
Q 015737 190 MISDALQQVGRNGV------VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (401)
Q Consensus 190 li~~Av~~v~~~g~------I~--i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~---- 257 (401)
++++|+..++++|. |. ...|++..|+ ++++|++|+++|.+|+ |+++++||+|+++|++|+
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999987643 33 3578999999 9999999999999986 788899999999999864
Q ss_pred ---------CHHHH-----------HHHHHHHHHcCC-------C---EEEEecCcchHHHHHHHHhcccCcceEEEEec
Q 015737 258 ---------NPKDM-----------FKILDSAVKEKY-------P---IVIVAEDIEQQALALLIRNKLRGVLKAAAIKA 307 (401)
Q Consensus 258 ---------~~~~i-----------~~~le~i~~~g~-------~---lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~ 307 (401)
+++++ ...++++++.|. + +|+++++|++.++++|.+++ |+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~------I~~i-- 314 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG------IMAL-- 314 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC------ceEE--
Confidence 33333 334667777651 4 89999999999999999876 5786
Q ss_pred CCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHH
Q 015737 308 PAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVE 372 (401)
Q Consensus 308 p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~ 372 (401)
+++++++|+|||++|||+++++ ++++++++||+|+.|++. +..+||++||+++..++
T Consensus 315 ---~rv~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~ 386 (531)
T TIGR02347 315 ---RRAKRRNMERLTLACGGEALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIK 386 (531)
T ss_pred ---ccCCHHHHHHHHHHhCCEEecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHH
Confidence 4677899999999999999984 889999999999999432 45789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015737 373 KRISEIRSLAEVV 385 (401)
Q Consensus 373 e~~~~l~~~l~~~ 385 (401)
|++|.++|++..+
T Consensus 387 E~er~l~DAl~v~ 399 (531)
T TIGR02347 387 QIKDAVRDGLRAV 399 (531)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999743
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.3e-61 Score=503.24 Aligned_cols=323 Identities=23% Similarity=0.324 Sum_probs=287.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
+++|+.|++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcc-ccccc--hh-hhHhhhhhccC------CchhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT-SREVE--DH-ELADVAAVSAG------NDYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~-s~~v~--~~-~l~~va~ts~~------~~~~la~ 189 (401)
||+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++ ++|++ +. ++.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88886 44 79999999987 5689999
Q ss_pred HHHHHHHhhc---cCCc---------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC
Q 015737 190 MISDALQQVG---RNGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (401)
Q Consensus 190 li~~Av~~v~---~~g~---------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~ 257 (401)
++++|+..++ .+|. |...+|+++.|+ ++++|++|+++|.+| +|+++++||+|++++++|+
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 9999999996 2342 233699999888 999999999999887 5899999999999999864
Q ss_pred CH-------------HHH-----------HHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 258 NP-------------KDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 258 ~~-------------~~i-----------~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
.. +++ .+.++++++.|++||+++++|++.++++|+.++ ++++ +++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i-----~rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGV-----RRC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEE-----ecC
Confidence 33 322 245677889999999999999999999999986 5776 467
Q ss_pred ccccHHHHHHHhCCeEEecCCCC-cccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISE 377 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~-~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~ 377 (401)
++++|+|||++|||+++++..++ ..+++++.+||+|+.|++. +..+||++||+++..++|++|.
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~ 387 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERS 387 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHH
Confidence 89999999999999999975544 3355677889999999943 3579999999999999999999
Q ss_pred HHHHHHHH
Q 015737 378 IRSLAEVV 385 (401)
Q Consensus 378 l~~~l~~~ 385 (401)
++|+|..+
T Consensus 388 i~DAl~~~ 395 (536)
T TIGR02340 388 LHDALCVV 395 (536)
T ss_pred HHHHHHHH
Confidence 99999743
No 21
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.6e-61 Score=502.75 Aligned_cols=318 Identities=21% Similarity=0.307 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++++..|+.+|.+++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch--h-hhHhhhhhccCC------chhHHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGN------DYTVGKM 190 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~la~l 190 (401)
||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|++++++++. . .|.++|+|++++ ++.++++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999863 3 799999988765 5899999
Q ss_pred HHHHHHhhccCC-----------c--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC
Q 015737 191 ISDALQQVGRNG-----------V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (401)
Q Consensus 191 i~~Av~~v~~~g-----------~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~ 257 (401)
+++|+..+++++ + |.+.+|++++|| ++++|++|++++.++ +|+++++||+|++++++|+
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998643 1 334579999998 999999999998775 5899999999999999864
Q ss_pred C-------------HHHHHHHHH-----------HHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 258 N-------------PKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 258 ~-------------~~~i~~~le-----------~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
. ++++.++++ ++.+.|++|||++++|++.++++|..++ |+|+ +++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av-----~~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAI-----RRV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEE-----ecC
Confidence 3 567766544 7888999999999999999999998865 6785 688
Q ss_pred ccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee-eeEEEEE---------------cCeEEEEccCCCHHHHHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVIT---------------KDSTLIVTDGSTRAAVEKRISE 377 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~-~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~ 377 (401)
++++|+|||++|||+++++ ++++++++||+ |+.|++. +..|||++||++...++|.+|.
T Consensus 312 ~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~ 386 (525)
T TIGR02344 312 RKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERN 386 (525)
T ss_pred CHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHH
Confidence 9999999999999999994 88899999999 9987762 4689999999999999999999
Q ss_pred HHHHHHHH
Q 015737 378 IRSLAEVV 385 (401)
Q Consensus 378 l~~~l~~~ 385 (401)
++|+|..+
T Consensus 387 l~DAl~~v 394 (525)
T TIGR02344 387 LQDAMAVA 394 (525)
T ss_pred HHHHHHHH
Confidence 99999733
No 22
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-61 Score=500.47 Aligned_cols=312 Identities=22% Similarity=0.359 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc---hh-hhHhhhhhccCCc------hhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE---DH-ELADVAAVSAGND------YTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~---~~-~l~~va~ts~~~~------~~la~ 189 (401)
||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++.+++ +. .+.++|++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 7999999999875 89999
Q ss_pred HHHHHHHhhccCC-c-------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHH
Q 015737 190 MISDALQQVGRNG-V-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD 261 (401)
Q Consensus 190 li~~Av~~v~~~g-~-------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~ 261 (401)
++++|+..+++++ . |...+|+++.|+ ++++|++|+++|.+|+ |+++++||+|+++|++|+...+
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCcc
Confidence 9999999998765 2 334589999999 9999999999999986 6888999999999999986643
Q ss_pred -HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccC
Q 015737 262 -MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340 (401)
Q Consensus 262 -i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~ 340 (401)
+... .-.+||||+++|++.++++|..|+ |+||| ++++++|+|||++|||++++ ++++
T Consensus 239 ~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~~l~~ia~~tGa~ii~-----~l~~ 296 (484)
T cd03342 239 EVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMN-----SVDD 296 (484)
T ss_pred ccCcE------EEEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHHHHHHHHHHhCCEEec-----cccc
Confidence 2211 114699999999999999999986 68875 46789999999999999999 4899
Q ss_pred CCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 015737 341 AGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVV 385 (401)
Q Consensus 341 ~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~ 385 (401)
+++++||+|+.|++. +..+||++||+++..++|.+|.++|+|..+
T Consensus 297 ~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~v 356 (484)
T cd03342 297 LSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAV 356 (484)
T ss_pred CChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999532 357899999999999999999999999743
No 23
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-60 Score=498.86 Aligned_cols=319 Identities=21% Similarity=0.311 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 578999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc--hh-hhHhhhhhccC------CchhHHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAG------NDYTVGKM 190 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~la~l 190 (401)
||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++++++ +. +|.++|+||++ +++.++++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 79999999998 46889999
Q ss_pred HHHHHHhhccCCc----------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC----
Q 015737 191 ISDALQQVGRNGV----------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (401)
Q Consensus 191 i~~Av~~v~~~g~----------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I---- 256 (401)
+++|+.++++++. |.++.|++++|+ ++++|++|+++|.+|+ .+|+.++||++++++++|
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~------~~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKA------GGPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcC------CCCccccCCcEEEEeccccccc
Confidence 9999999987653 556789999999 9999999999999975 247778899999988864
Q ss_pred ---------CCH-----------HHHHHHHHHHHHcCCCEEEEecCc-----chHHHHHHHHhcccCcceEEEEecCCcc
Q 015737 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDI-----EQQALALLIRNKLRGVLKAAAIKAPAFG 311 (401)
Q Consensus 257 ---------~~~-----------~~i~~~le~i~~~g~~lvIi~~~I-----~~~al~~L~~n~~~g~~~v~aVk~p~~~ 311 (401)
+++ +++.++++++++.|+|||||+++| ++.++++|..+ +|+||+
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~------~I~av~----- 304 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKL------KIMVVK----- 304 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHC------CceEEe-----
Confidence 333 334566888999999999999998 67777777654 478874
Q ss_pred ccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE----------------cCeEEEEccCCCHHHHHHHH
Q 015737 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----------------KDSTLIVTDGSTRAAVEKRI 375 (401)
Q Consensus 312 ~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~----------------~~~~tIi~~g~~~~~l~e~~ 375 (401)
++++++|+|||++|||++++ +++++++++||+|+.|++. +..|||++||+++..++|++
T Consensus 305 ~~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~ 379 (515)
T cd03338 305 DIEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAE 379 (515)
T ss_pred cCCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHH
Confidence 77899999999999999999 4888899999999998864 25789999999999999999
Q ss_pred HHHHHHHHHH
Q 015737 376 SEIRSLAEVV 385 (401)
Q Consensus 376 ~~l~~~l~~~ 385 (401)
|.++|+|..+
T Consensus 380 r~i~Dal~~~ 389 (515)
T cd03338 380 RSLHDALCVI 389 (515)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-60 Score=496.35 Aligned_cols=324 Identities=22% Similarity=0.324 Sum_probs=290.0
Q ss_pred eecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhcccc
Q 015737 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (401)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 113 (401)
...| .+++..|+.+|.+++++|+|||||+||+|||+++.| ++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 13 ~~~~--~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~ 85 (522)
T TIGR02345 13 TSQG--KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDS 85 (522)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHH
Confidence 3445 689999999999999999999999999999999999 99999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc-----hh-hhHhhhhhccC-----
Q 015737 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAG----- 182 (401)
Q Consensus 114 ~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~----- 182 (401)
++||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|++ +. .+.++|+|+++
T Consensus 86 ~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~ 165 (522)
T TIGR02345 86 EVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIA 165 (522)
T ss_pred HhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999987 32 79999999987
Q ss_pred -CchhHHHHHHHHHHhhccCC------cEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc
Q 015737 183 -NDYTVGKMISDALQQVGRNG------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255 (401)
Q Consensus 183 -~~~~la~li~~Av~~v~~~g------~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~ 255 (401)
++++|++++++|+..+++++ .|...+|++++|+ ++++|++|+++|.+|||. .|+++++||+|+++|++
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~ 240 (522)
T TIGR02345 166 HEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVE 240 (522)
T ss_pred chHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecC
Confidence 46899999999999998652 2334589999999 899999999999999864 46788999999999987
Q ss_pred CC-------------CHHHHH-----------HHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcc
Q 015737 256 IK-------------NPKDMF-----------KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFG 311 (401)
Q Consensus 256 I~-------------~~~~i~-----------~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~ 311 (401)
|+ +++++. ..++++.+.|+++|+|+++|++.++++|..++ |+++ +
T Consensus 241 Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~------I~~~-----~ 309 (522)
T TIGR02345 241 LELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHN------IFCA-----G 309 (522)
T ss_pred cccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCC------cEEE-----e
Confidence 63 444433 34566788899999999999999999998886 4775 6
Q ss_pred ccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHH
Q 015737 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRIS 376 (401)
Q Consensus 312 ~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~ 376 (401)
++.++++++||++|||+++++ ++++++++||+|+.|+.. +..|||++||+++..++|++|
T Consensus 310 ~v~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r 384 (522)
T TIGR02345 310 RVSDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAER 384 (522)
T ss_pred cCCHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHH
Confidence 778999999999999999994 888899999999998864 247999999999999999999
Q ss_pred HHHHHHHHH
Q 015737 377 EIRSLAEVV 385 (401)
Q Consensus 377 ~l~~~l~~~ 385 (401)
.++|+|..+
T Consensus 385 ~i~DAl~~~ 393 (522)
T TIGR02345 385 SLHDAIMIV 393 (522)
T ss_pred HHHHHHHHH
Confidence 999999733
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.3e-60 Score=494.24 Aligned_cols=319 Identities=21% Similarity=0.319 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc--hh-hhHhhhhhccCC------chhHHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~la~l 190 (401)
||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++ +. +|.++|+||+++ .+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 799999999875 4678999
Q ss_pred HHHHHHhhcc---CCc-----E--EeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC---
Q 015737 191 ISDALQQVGR---NGV-----V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--- 257 (401)
Q Consensus 191 i~~Av~~v~~---~g~-----I--~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~--- 257 (401)
+++|+..+++ +|. | ....|+++.|+ ++++|++|+++|.++. +||+.++||+|++++++|+
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCc
Confidence 9999999975 232 2 23489999999 9999999999998742 5888899999999998642
Q ss_pred ----------CHH-----------HHHHHHHHHHHcCCCEEEEecCc-----chHHHHHHHHhcccCcceEEEEecCCcc
Q 015737 258 ----------NPK-----------DMFKILDSAVKEKYPIVIVAEDI-----EQQALALLIRNKLRGVLKAAAIKAPAFG 311 (401)
Q Consensus 258 ----------~~~-----------~i~~~le~i~~~g~~lvIi~~~I-----~~~al~~L~~n~~~g~~~v~aVk~p~~~ 311 (401)
+++ ++.++++++++.|+|||||+++| ++.++++|..+ +|+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~------~I~av~----- 305 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKM------KIMVVK----- 305 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhC------CceEEe-----
Confidence 332 34567888999999999999999 67777777654 578875
Q ss_pred ccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEE-E---------------cCeEEEEccCCCHHHHHHHH
Q 015737 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI-T---------------KDSTLIVTDGSTRAAVEKRI 375 (401)
Q Consensus 312 ~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v-~---------------~~~~tIi~~g~~~~~l~e~~ 375 (401)
++++++|+|||++|||+++++ ++++++++||+|+.|++ + ...+||++||+++..++|++
T Consensus 306 ~v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~e 380 (517)
T TIGR02342 306 DIEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAE 380 (517)
T ss_pred cCCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHH
Confidence 678999999999999999994 88899999999999883 2 25789999999999999999
Q ss_pred HHHHHHHHHH
Q 015737 376 SEIRSLAEVV 385 (401)
Q Consensus 376 ~~l~~~l~~~ 385 (401)
|.++|++..+
T Consensus 381 r~i~DAl~~v 390 (517)
T TIGR02342 381 RSLHDALCVI 390 (517)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 26
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-59 Score=489.38 Aligned_cols=317 Identities=21% Similarity=0.315 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCC
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~--~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 117 (401)
+++++.|+.+|.+++++|+|||||+||+|||+++ +|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 6899999999999999999999999999999998 59999999999999999999998 99999999999999999
Q ss_pred CcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc-----hh-hhHhhhhhccCC------ch
Q 015737 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAGN------DY 185 (401)
Q Consensus 118 GTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~~------~~ 185 (401)
||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|++++++++ +. +|.++|+|++++ ++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999884 12 789999987764 58
Q ss_pred hHHHHHHHHHHhhccC---C--cEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC---
Q 015737 186 TVGKMISDALQQVGRN---G--VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--- 257 (401)
Q Consensus 186 ~la~li~~Av~~v~~~---g--~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~--- 257 (401)
.|++++++|+..++.. . .|.+.+|++++|+ ++++|+++++++.++ |+++++||+|+++|++|+
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCccc
Confidence 9999999999999632 2 3445689999999 899999999986542 688999999999999764
Q ss_pred -----------CHHHHHH-----------HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccc
Q 015737 258 -----------NPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (401)
Q Consensus 258 -----------~~~~i~~-----------~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~ 315 (401)
+++|+.. .+++|++.|++++++++.|++.++++|..++ |++||+| ++
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v-----~~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHA-----DF 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecC-----CH
Confidence 5666533 3668889999999999999999999998886 6898765 46
Q ss_pred ccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHH
Q 015737 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRS 380 (401)
Q Consensus 316 ~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~ 380 (401)
++|+|||++|||++++ +++++++++||+|+.|+.. +..|||++||+++..++|.+|.++|
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~D 382 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHD 382 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHH
Confidence 6799999999999999 4889999999999988753 3689999999999999999999999
Q ss_pred HHHHH
Q 015737 381 LAEVV 385 (401)
Q Consensus 381 ~l~~~ 385 (401)
+|..+
T Consensus 383 al~~~ 387 (517)
T cd03336 383 ALCVL 387 (517)
T ss_pred HHHHH
Confidence 99733
No 27
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.3e-59 Score=489.36 Aligned_cols=317 Identities=20% Similarity=0.297 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC-----CCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK-----YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~-----~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~ 114 (401)
+++|..|+++|..++++|+|||||+||+|||+++ .|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 69999999999999999999998 99999999999999
Q ss_pred cCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch-----h-hhHhhhhhccCC-----
Q 015737 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN----- 183 (401)
Q Consensus 115 ~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~----- 183 (401)
+||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++++++ . +|.++|+|++++
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999998854 3 789999988765
Q ss_pred -chhHHHHHHHHHHhhccC---C--cEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC-
Q 015737 184 -DYTVGKMISDALQQVGRN---G--VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI- 256 (401)
Q Consensus 184 -~~~la~li~~Av~~v~~~---g--~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I- 256 (401)
.+.|++++++|+..+... . .|.+.+|++++|+ ++++|+++++++.+ .|+++++||+|+++|++|
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 488999999999988532 2 3455699999999 89999999998754 378899999999999986
Q ss_pred -------------CCHHHHHH-----------HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccc
Q 015737 257 -------------KNPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGE 312 (401)
Q Consensus 257 -------------~~~~~i~~-----------~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~ 312 (401)
++++++.. .+++|++.|+++++++++|++.++++|.+++ |++|| +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEEe-----c
Confidence 66666543 3667889999999999999999999999886 58875 5
Q ss_pred cccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHH
Q 015737 313 RKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISE 377 (401)
Q Consensus 313 ~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~ 377 (401)
+++++++|||++|||+++++ ++++++++||+|+.|++. +..|||++||++...++|++|.
T Consensus 317 v~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~ 391 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERS 391 (533)
T ss_pred CCHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHH
Confidence 66889999999999999994 888999999999998832 4679999999999999999999
Q ss_pred HHHHHHHH
Q 015737 378 IRSLAEVV 385 (401)
Q Consensus 378 l~~~l~~~ 385 (401)
++|+|..+
T Consensus 392 i~DAl~vv 399 (533)
T PTZ00212 392 LHDALCVL 399 (533)
T ss_pred HHHHHHHH
Confidence 99999743
No 28
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-59 Score=488.47 Aligned_cols=301 Identities=21% Similarity=0.333 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++++..|+.+|.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 689999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccc--hh-hhHhhhhhccC------CchhHHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAG------NDYTVGKM 190 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~la~l 190 (401)
||+++|+++||+++.+++++|+||+.|++||++|.+.++++|++++++++ +. .|.++++|+++ +++.++++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 79999999988 45799999
Q ss_pred HHHHHHhhccC--C---------c--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC
Q 015737 191 ISDALQQVGRN--G---------V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (401)
Q Consensus 191 i~~Av~~v~~~--g---------~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~ 257 (401)
+++|+..++++ + . |...+|+++.|+ ++++|++|++++.|| +|+++++||+|++++++|+
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999754 2 1 334579999998 999999999999886 5899999999999999987
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCc
Q 015737 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (401)
Q Consensus 258 ~~~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~ 337 (401)
. |||++++|++.++++|..|+ |++|+ ++++++|+|||++|||+++++
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~L~rIa~~tGa~ii~~----- 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKAG------ITALR-----RVRKTDNNRIARACGATIVNR----- 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEecc-----
Confidence 5 99999999999999999985 58875 578999999999999999995
Q ss_pred ccCCCCCCcee-eeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 015737 338 LDKAGKEVLGT-AIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVV 385 (401)
Q Consensus 338 ~~~~~~~~LG~-~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~ 385 (401)
++++++++||+ |+.+++. +..+||++||++...++|.+|.++|++..+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~ 353 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVA 353 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 88888999999 4554422 468999999999999999999999999743
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-59 Score=490.72 Aligned_cols=316 Identities=22% Similarity=0.329 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++++..|+.+|..++++|+|||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 469999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcccc-ccch---h-hhHhhhhhccCC-----chhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVED---H-ELADVAAVSAGN-----DYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~-~v~~---~-~l~~va~ts~~~-----~~~la~ 189 (401)
||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++ ++++ . ++.+++++++++ ++.|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7643 3 788998888743 899999
Q ss_pred HHHHHHHhhccCC--c-----E--EeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC----
Q 015737 190 MISDALQQVGRNG--V-----V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (401)
Q Consensus 190 li~~Av~~v~~~g--~-----I--~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I---- 256 (401)
++++|+..+++++ . | .+..|++++|+ ++++|++|++++. .+++.++||+|+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998654 2 2 23489999998 9999999999842 257789999999999863
Q ss_pred ---------CCHHH-----------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccc
Q 015737 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (401)
Q Consensus 257 ---------~~~~~-----------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~ 316 (401)
+++++ +.++++++++.|+||||++++|+|.++++|..++ |+|||+|+ ..
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~------I~av~~~~-----~~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN------IMVLKIPS-----KF 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC------cEEEecCC-----HH
Confidence 44433 4456889999999999999999999999998664 79988775 45
Q ss_pred cHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE----------------cCeEEEEccCCCHHHHHHHHHHHHH
Q 015737 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----------------KDSTLIVTDGSTRAAVEKRISEIRS 380 (401)
Q Consensus 317 ~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~----------------~~~~tIi~~g~~~~~l~e~~~~l~~ 380 (401)
+|+|||++|||+++++ ++++++++||+|++|++. +..+||++||+++..++|++|.++|
T Consensus 312 ~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~D 386 (531)
T TIGR02346 312 ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDD 386 (531)
T ss_pred HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHH
Confidence 8999999999999984 888899999999998864 2468999999999999999999999
Q ss_pred HHHHH
Q 015737 381 LAEVV 385 (401)
Q Consensus 381 ~l~~~ 385 (401)
+|..+
T Consensus 387 Al~~~ 391 (531)
T TIGR02346 387 GVNVI 391 (531)
T ss_pred HHHHH
Confidence 99743
No 30
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.6e-58 Score=476.71 Aligned_cols=305 Identities=36% Similarity=0.538 Sum_probs=281.3
Q ss_pred eeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccc
Q 015737 33 EVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112 (401)
Q Consensus 33 ~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 112 (401)
...++ ++++..|+++|..++++++|||||+||+|||+++.|+++|||||+||+++|+++||. |+|+++++++||
T Consensus 2 ~~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~ 75 (464)
T cd00309 2 EREFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQD 75 (464)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHH
Confidence 34566 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcccccc--chh-hhHhhhhhccC------C
Q 015737 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV--EDH-ELADVAAVSAG------N 183 (401)
Q Consensus 113 ~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v--~~~-~l~~va~ts~~------~ 183 (401)
+++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++++ ++. ++.++|+|+++ +
T Consensus 76 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~ 155 (464)
T cd00309 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGG 155 (464)
T ss_pred hHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999984 444 89999999998 6
Q ss_pred chhHHHHHHHHHHhhcc------CCcEEe--eCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc
Q 015737 184 DYTVGKMISDALQQVGR------NGVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255 (401)
Q Consensus 184 ~~~la~li~~Av~~v~~------~g~I~i--~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~ 255 (401)
++.+++++++|+..+++ .+.|++ .+|++++|| ++++|++|+++|.+|+ |+++++||+|++++++
T Consensus 156 ~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~~~~n~~Ili~~~~ 227 (464)
T cd00309 156 DDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCK 227 (464)
T ss_pred hHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------CceeecCceEEEEecC
Confidence 89999999999999987 455554 489999999 8999999999999986 6889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCC
Q 015737 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG 335 (401)
Q Consensus 256 I~~~~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g 335 (401)
|+. ++|++++|+++++++|..++ |++|+ ++++++|+|||++|||+++++
T Consensus 228 Le~-----------------lIi~~~~I~~~al~~L~~~~------I~~v~-----~~~~~~L~~Ia~~tGa~ii~~--- 276 (464)
T cd00309 228 LEY-----------------VVIAEKGIDDEALHYLAKLG------IMAVR-----RVRKEDLERIAKATGATIVSR--- 276 (464)
T ss_pred cce-----------------EEecCCCcCHHHHHHHHHCC------eEEEE-----eCCHHHHHHHHHHhCCEEecc---
Confidence 986 88888899999999998865 68875 467999999999999999995
Q ss_pred CcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHHHH
Q 015737 336 LTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLAEV 384 (401)
Q Consensus 336 ~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~ 384 (401)
+++++++++|+|+.|++. ...|||++||+++..++|+++.++|++..
T Consensus 277 --~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~ 338 (464)
T cd00309 277 --LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCA 338 (464)
T ss_pred --cccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 788889999999988864 46799999999999999999999999973
No 31
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-58 Score=478.57 Aligned_cols=326 Identities=35% Similarity=0.517 Sum_probs=288.6
Q ss_pred cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (401)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~ 109 (401)
+++...|| ++||..|+.|++.++++|+|||||+||||||+++.|+|+|||||+||+|+|+++||. |||++++|.
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 57888999 899999999999999999999999999999999977999999999999999999998 999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh--hhHhhhhh-----ccC
Q 015737 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAV-----SAG 182 (401)
Q Consensus 110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~l~~va~t-----s~~ 182 (401)
+||+++||||||++||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. +. +++.+ +++
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~ 154 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSAN 154 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999754 22 44443 445
Q ss_pred CchhHHHHHHHHHHhhcc-----CCcEEe-eCCCCccceeEEEeceEEeecccCcccccccccce-eEeeCceEEEeccc
Q 015737 183 NDYTVGKMISDALQQVGR-----NGVVTI-EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRT-VEFHDGKLLLVDKK 255 (401)
Q Consensus 183 ~~~~la~li~~Av~~v~~-----~g~I~i-~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~-~~i~n~~Ill~d~~ 255 (401)
+++++++++++|+..++. ++.+.+ +.|++..|+ ++++||+|+++|.+||| || ++++||+|+++|++
T Consensus 155 ~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~ 227 (524)
T COG0459 155 SDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKK 227 (524)
T ss_pred ChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCC------CCccccccceEEEEccc
Confidence 568999999999999998 676554 466676777 99999999999999986 55 78899999999997
Q ss_pred CCC-------------HHHHH------------HHHHHHHHcCCC-EEEEecCcchHHHHHHHHhcccCcceEEEEecCC
Q 015737 256 IKN-------------PKDMF------------KILDSAVKEKYP-IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (401)
Q Consensus 256 I~~-------------~~~i~------------~~le~i~~~g~~-lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~ 309 (401)
|+. +++++ .+++.+.+.|.+ +++++++|+|.++++|..++ |+++
T Consensus 228 l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~---- 297 (524)
T COG0459 228 LEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTG---- 297 (524)
T ss_pred cccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceec----
Confidence 643 33333 235567789999 88999999999999998875 5774
Q ss_pred ccccccccH-HHHHHHhCCeEEecCCCCcccCCCCCCcee--eeEEEEE-----------------cCeEEEEccCCCHH
Q 015737 310 FGERKSHYL-DDIAILTGGLVIRDEMGLTLDKAGKEVLGT--AIKVVIT-----------------KDSTLIVTDGSTRA 369 (401)
Q Consensus 310 ~~~~~~~~L-e~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~--~~~v~v~-----------------~~~~tIi~~g~~~~ 369 (401)
|++.++++ ++|+.+|||+.++. .++.++..+|. |+.|+.. ...+||++||+++.
T Consensus 298 -~~v~~~dl~~~l~~~~ga~~v~~-----~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~ 371 (524)
T COG0459 298 -RRVKKEDLGERLAKLGGAKIVSV-----LKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEV 371 (524)
T ss_pred -ceecchhhHHHHHHccCceEEee-----cccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHh
Confidence 67889999 89999999999995 89999999999 9999875 24799999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015737 370 AVEKRISEIRSLAEVV 385 (401)
Q Consensus 370 ~l~e~~~~l~~~l~~~ 385 (401)
.++|+++.++|+|..+
T Consensus 372 ~ldE~er~i~DAL~~~ 387 (524)
T COG0459 372 ELDEKERRIEDALNVV 387 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999743
No 32
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-59 Score=450.98 Aligned_cols=320 Identities=23% Similarity=0.350 Sum_probs=292.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
.-..-.|+.+|..+++.++|||||+||||+|++..|+.+|||||+||||-|++.||+ ||.|+++|++||.|+||||
T Consensus 19 k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDaEVGDGT 94 (543)
T KOG0361|consen 19 KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDAEVGDGT 94 (543)
T ss_pred chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccccccCCc
Confidence 346678999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch--h-----hhHhhhhhccCC------chh
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-----ELADVAAVSAGN------DYT 186 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-----~l~~va~ts~~~------~~~ 186 (401)
||||+|++|+|+++..+++.|+||..|+++|++|...+++.|+++++.++. . .|++.|.|++++ +++
T Consensus 95 TSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~f 174 (543)
T KOG0361|consen 95 TSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEF 174 (543)
T ss_pred eeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999988872 1 588899998875 689
Q ss_pred HHHHHHHHHHhhccC---Cc--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc------
Q 015737 187 VGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK------ 255 (401)
Q Consensus 187 la~li~~Av~~v~~~---g~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~------ 255 (401)
|+++++||+..+..+ .. |++++||+++|| .+++|+.|++.|....| +++|+++.||+|+++|.+
T Consensus 175 F~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaE 249 (543)
T KOG0361|consen 175 FAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAE 249 (543)
T ss_pred HHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeeccc
Confidence 999999999999743 11 777899999999 79999999999987654 678999999999999974
Q ss_pred -------CCCHHHHHHH-----------HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccccc
Q 015737 256 -------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (401)
Q Consensus 256 -------I~~~~~i~~~-----------le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~ 317 (401)
+.++++++.+ +++|.++|.++|+..-.|.|.|.|+|+...+ .|| ||++++|
T Consensus 250 kdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----FCA------GRV~~eD 318 (543)
T KOG0361|consen 250 KDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----FCA------GRVPEED 318 (543)
T ss_pred ccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----eec------CcCCHHH
Confidence 5677777654 6788999999999999999999999998875 565 9999999
Q ss_pred HHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHH
Q 015737 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLA 382 (401)
Q Consensus 318 Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l 382 (401)
|.|+..+||+.+.+ +..++.++.||.|+.|+.. .++||+++||+-++.++|.+|+|+|++
T Consensus 319 l~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAI 393 (543)
T KOG0361|consen 319 LNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAI 393 (543)
T ss_pred HHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHH
Confidence 99999999999999 5888999999999999864 579999999999999999999999999
Q ss_pred HH
Q 015737 383 EV 384 (401)
Q Consensus 383 ~~ 384 (401)
..
T Consensus 394 mI 395 (543)
T KOG0361|consen 394 MI 395 (543)
T ss_pred HH
Confidence 74
No 33
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-57 Score=477.11 Aligned_cols=316 Identities=22% Similarity=0.331 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCC
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKY--GPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~--g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 117 (401)
++++..|++++.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 68999999999999999999999999999999985 9999999999999999999998 99999999999999999
Q ss_pred CcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch-----h-hhHhhhhhccCC------ch
Q 015737 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN------DY 185 (401)
Q Consensus 118 GTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~------~~ 185 (401)
||||++||+++||+++.+|+++|+||+.|++||++|.+.++++|+++++++++ . +|.++|+|++++ .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 789999998875 37
Q ss_pred hHHHHHHHHHHhhccC---CcEEe--eCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCC--
Q 015737 186 TVGKMISDALQQVGRN---GVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN-- 258 (401)
Q Consensus 186 ~la~li~~Av~~v~~~---g~I~i--~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~-- 258 (401)
.|++++++|+..+... ..|.+ .+|++++|+ ++++|+++++++.+ .|+++++||+|+++|++|+.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 8999999999988432 23443 489999999 89999999998654 36889999999999997653
Q ss_pred ------------HHHHHH-----------HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccc
Q 015737 259 ------------PKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (401)
Q Consensus 259 ------------~~~i~~-----------~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~ 315 (401)
++++.. .+++|++.|++++++++.|++.++++|..++ |++|+.|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecCC-----H
Confidence 334432 3668889999999999999999999998875 68987654 6
Q ss_pred ccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHH
Q 015737 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRS 380 (401)
Q Consensus 316 ~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~ 380 (401)
++|+|||++|||+++++ ++++++++||+|+.|++. +..+||++||+++..++|++|.++|
T Consensus 309 ~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~D 383 (519)
T TIGR02341 309 EGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHD 383 (519)
T ss_pred HHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 78999999999999994 888899999999988753 3689999999999999999999999
Q ss_pred HHHH
Q 015737 381 LAEV 384 (401)
Q Consensus 381 ~l~~ 384 (401)
+|..
T Consensus 384 al~~ 387 (519)
T TIGR02341 384 ALCV 387 (519)
T ss_pred HHHH
Confidence 9973
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-57 Score=471.49 Aligned_cols=302 Identities=21% Similarity=0.290 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++++..|+++|.+++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDGT 82 (472)
T cd03341 7 EEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDGT 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccc-cch---h-hhHhhhhhccC-----CchhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE-VED---H-ELADVAAVSAG-----NDYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~---~-~l~~va~ts~~-----~~~~la~ 189 (401)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +++ . .+.++++++++ +++++++
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~ 162 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999865 533 2 67788887753 4689999
Q ss_pred HHHHHHHhhccC--Cc-------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHH
Q 015737 190 MISDALQQVGRN--GV-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPK 260 (401)
Q Consensus 190 li~~Av~~v~~~--g~-------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~ 260 (401)
++++|+..++++ |. |.+.+|++++|| ++++|++|++.+. .++++++||+|++++++|+.
T Consensus 163 l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~-- 230 (472)
T cd03341 163 LVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI-- 230 (472)
T ss_pred HHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC--
Confidence 999999999865 43 334589999999 9999999987542 24588999999999999976
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccC
Q 015737 261 DMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340 (401)
Q Consensus 261 ~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~ 340 (401)
|+||||++++|+++++++|..+ +|+|||+|+ +++|+|||++|||+++++ +++
T Consensus 231 ------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~ 282 (472)
T cd03341 231 ------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLPR-----LGA 282 (472)
T ss_pred ------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEecc-----ccc
Confidence 8999999999999999998765 479987664 778999999999999995 888
Q ss_pred CCCCCceeeeEEEEE----------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 015737 341 AGKEVLGTAIKVVIT----------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVV 385 (401)
Q Consensus 341 ~~~~~LG~~~~v~v~----------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~ 385 (401)
+++++||+|+.|++. +..+||++||++...++|++|.++|+|..+
T Consensus 283 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~ 343 (472)
T cd03341 283 PTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVF 343 (472)
T ss_pred CCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 889999999988864 245899999999999999999999999733
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-57 Score=435.60 Aligned_cols=323 Identities=23% Similarity=0.313 Sum_probs=282.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
++.|..|++++++++|+++|||||+||||||+.+.|+++|||||+|||+.|++-||+ |+||++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch--h-hhHhhhhhccCC------chhHHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGN------DYTVGKM 190 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~la~l 190 (401)
||||+|+++||+.+.+|+++|+||+.|.+.|+.|.+.++++|++++.|++- . .|.+-|.||+|+ ...++++
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 999999999999999999999999999999999999999999999998863 3 689999999875 4688999
Q ss_pred HHHHHHhhccCC--------cE--EeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC----
Q 015737 191 ISDALQQVGRNG--------VV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (401)
Q Consensus 191 i~~Av~~v~~~g--------~I--~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I---- 256 (401)
.++|+.++.... .| .++.||.++|+ ++++|++|++..... ..|.++++++|.+..+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 999999985311 13 24689999999 999999999875432 267888999999988743
Q ss_pred ---------CCHHH-----------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccc
Q 015737 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (401)
Q Consensus 257 ---------~~~~~-----------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~ 316 (401)
+++.+ +++++++|++.|+|+++++++|-.++++-|+.|-+ ..++||+|| ++.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL-~klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFL-AKLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHH-HhCcEEEEc-----cccHh
Confidence 34433 45678899999999999999987666665554433 235789985 67899
Q ss_pred cHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE-----------------cCeEEEEccCCCHHHHHHHHHHHH
Q 015737 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----------------KDSTLIVTDGSTRAAVEKRISEIR 379 (401)
Q Consensus 317 ~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~-----------------~~~~tIi~~g~~~~~l~e~~~~l~ 379 (401)
|+|.+|+.+|++++++ ++.++++.||+++.++.. ..+++|+.||+++-.++|.+|+|+
T Consensus 327 diefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlh 401 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLH 401 (534)
T ss_pred hHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhh
Confidence 9999999999999994 999999999999877753 578999999999999999999999
Q ss_pred HHHHHH
Q 015737 380 SLAEVV 385 (401)
Q Consensus 380 ~~l~~~ 385 (401)
|+|..+
T Consensus 402 DALCVi 407 (534)
T KOG0358|consen 402 DALCVI 407 (534)
T ss_pred hhhHHH
Confidence 999843
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-54 Score=413.07 Aligned_cols=318 Identities=22% Similarity=0.331 Sum_probs=280.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCC
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~--~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 117 (401)
++||...+.|+..+.|+|+|||||+||+||+... .|.+.+||||+||||++.+++|+ ||+|++.|+-||.|+||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 7899999999999999999999999999999863 46799999999999999999999 99999999999999999
Q ss_pred CcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccch-----h-hhHhhhhhccCC------ch
Q 015737 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN------DY 185 (401)
Q Consensus 118 GTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~------~~ 185 (401)
|||||+||+++||+++.+|+++.+||+.|++||+.|...+++.|.+.++.-.. . +|.++|+|.+++ ++
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999988876432 1 899999998865 58
Q ss_pred hHHHHHHHHHHhhccCC-----cEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccC----
Q 015737 186 TVGKMISDALQQVGRNG-----VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (401)
Q Consensus 186 ~la~li~~Av~~v~~~g-----~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I---- 256 (401)
+|+++.++|+.++...+ .|.++.||+++|| .+=+|+.+++.+-. ..|++++||+||+-|.++
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 99999999999986543 2445799999999 79999999988643 478899999999988742
Q ss_pred ----------CCH-----------HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccc
Q 015737 257 ----------KNP-----------KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (401)
Q Consensus 257 ----------~~~-----------~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~ 315 (401)
.+. +.+...+++|.++|+|++|..+-|.++..++|...+ |+++. +..-
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag------i~aIE-----HADF 312 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG------IMAIE-----HADF 312 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC------cceee-----cccc
Confidence 222 124556889999999999999999999999998764 68864 4556
Q ss_pred ccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHH
Q 015737 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRS 380 (401)
Q Consensus 316 ~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~ 380 (401)
+-+||++..|||.+++ ++++++...||+|+.++.- ...|||++||++++.+||.+|+|+|
T Consensus 313 dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHD 387 (527)
T KOG0363|consen 313 DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHD 387 (527)
T ss_pred hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHH
Confidence 7799999999999999 6999999999999987731 5799999999999999999999999
Q ss_pred HHHHHh
Q 015737 381 LAEVVL 386 (401)
Q Consensus 381 ~l~~~~ 386 (401)
+|....
T Consensus 388 ALcVLa 393 (527)
T KOG0363|consen 388 ALCVLA 393 (527)
T ss_pred HHHHHH
Confidence 998543
No 37
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=3.6e-53 Score=439.32 Aligned_cols=317 Identities=28% Similarity=0.450 Sum_probs=281.2
Q ss_pred HHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCcchHHHHHHHHHHh
Q 015737 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAE 132 (401)
Q Consensus 53 la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTt~vvLa~~LL~~ 132 (401)
|+++|++||||+||+|||+++.|+++|||||+||+++++++||+ |+++++++++|++++||||||+++|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh--hhHhhhhhccCCc------hhHHHHHHHHHHhhccC---
Q 015737 133 GVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAVSAGND------YTVGKMISDALQQVGRN--- 201 (401)
Q Consensus 133 ~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~l~~va~ts~~~~------~~la~li~~Av~~v~~~--- 201 (401)
+.+++++|+||..|++||+.|.+.+++.|++++++++.. .+.++++|+++++ +.+++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888753 7999999999887 89999999999544321
Q ss_pred Cc--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHH------------------
Q 015737 202 GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD------------------ 261 (401)
Q Consensus 202 g~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~------------------ 261 (401)
+. +....|++++|| ++++|++|++++.++ +|+++++||+|++++++|+...+
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 12 334588888999 999999999999886 48888899999999998876665
Q ss_pred -----HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCC
Q 015737 262 -----MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (401)
Q Consensus 262 -----i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~ 336 (401)
+.++++++.+.|+++||++++|++.++++|..+++ .++ .++++++|+|||++|||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~~---- 293 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIISS---- 293 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBSS----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEecc----
Confidence 78889999999999999999999999999999875 554 6788999999999999999995
Q ss_pred cccCCCCCCceeeeEEEEE-----------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHHh-----------cc
Q 015737 337 TLDKAGKEVLGTAIKVVIT-----------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVVL-----------LV 388 (401)
Q Consensus 337 ~~~~~~~~~LG~~~~v~v~-----------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~~-----------~~ 388 (401)
+++++++.+|+|+.++.. ...+||++||+++..++|+++.++|++...- .|
T Consensus 294 -~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG 372 (485)
T PF00118_consen 294 -LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGG 372 (485)
T ss_dssp -CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTT
T ss_pred -cccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCc
Confidence 788888889999998432 4679999999999999999999999997332 56
Q ss_pred cceeeehhh
Q 015737 389 SFYIVLVHF 397 (401)
Q Consensus 389 ~~~~~~~~~ 397 (401)
.+|..++|+
T Consensus 373 ~~e~~l~~~ 381 (485)
T PF00118_consen 373 ATELHLSKA 381 (485)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhhh
Confidence 677666653
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=404.54 Aligned_cols=323 Identities=22% Similarity=0.322 Sum_probs=285.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCc
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 119 (401)
+.+|..|.-++.+++++|++||||-|+|||++|+.|+..+||||+|||+.+.++||+ +|+|++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhc-cccccchh---hhHhhhhhccCC------chhHHH
Q 015737 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVEDH---ELADVAAVSAGN------DYTVGK 189 (401)
Q Consensus 120 Tt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~---~l~~va~ts~~~------~~~la~ 189 (401)
|+|++++++||+++.+|+..++||+.+++||+.|...+++++++ ++.|++.. -|.++++|++++ .+++++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999986 57777754 689999999875 489999
Q ss_pred HHHHHHHhhcc---CCc---------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc--
Q 015737 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (401)
Q Consensus 190 li~~Av~~v~~---~g~---------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~-- 255 (401)
++++|+..+.- +|. |-+-.|.+..|| .++.|+.+++...+. .|+..++|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999988742 231 334589999999 799999999988764 58999999999999984
Q ss_pred -----------CCCHHHHHHH-----------HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 256 -----------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 256 -----------I~~~~~i~~~-----------le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
+.+++++.++ +++|...|+|+|+++++|||.++.+|+.++ ++|| ||+
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAV-----rR~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAV-----RRC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhh-----HHH
Confidence 4566655432 568899999999999999999999999986 4776 789
Q ss_pred ccccHHHHHHHhCCeEEecCCCCc-ccCCCCCCceeeeEEEEE--------------cCeEEEEccCCCHHHHHHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVVIT--------------KDSTLIVTDGSTRAAVEKRISEI 378 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~~-~~~~~~~~LG~~~~v~v~--------------~~~~tIi~~g~~~~~l~e~~~~l 378 (401)
++++|++||++||++++++..+++ -|.+.+..+|+|+.|... ...+.|++||+|...+||.+|++
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd~~~DEmers~ 394 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGANDFMLDEMERSL 394 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCcccHhhhccch
Confidence 999999999999999999765443 245788999999987653 34799999999999999999999
Q ss_pred HHHHHHH
Q 015737 379 RSLAEVV 385 (401)
Q Consensus 379 ~~~l~~~ 385 (401)
+|+|..+
T Consensus 395 hdaL~Vl 401 (545)
T KOG0360|consen 395 HDALCVL 401 (545)
T ss_pred hhHHHHH
Confidence 9999743
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-49 Score=393.06 Aligned_cols=316 Identities=22% Similarity=0.320 Sum_probs=275.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCC
Q 015737 39 DGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDG 118 (401)
Q Consensus 39 ~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDG 118 (401)
.+++...|+++|+++++++||+|||+|||||++|+.|++++|||.+||+++++++||+ ||||++++++|+++.|||
T Consensus 24 ~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 24 EEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDG 99 (537)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCC
Confidence 4789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccc-cchh-hhHhhhhhcc-----CCchhHHHHH
Q 015737 119 CTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE-VEDH-ELADVAAVSA-----GNDYTVGKMI 191 (401)
Q Consensus 119 TTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~~-~l~~va~ts~-----~~~~~la~li 191 (401)
|+++|+|+++||+++.+||..|++|.+|++||+.|.+.+++.|.++... +.+. +...+++++. .+++++++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lV 179 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLV 179 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998543 2222 3335555543 4579999999
Q ss_pred HHHHHhhccCC-------cEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEeccc---------
Q 015737 192 SDALQQVGRNG-------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK--------- 255 (401)
Q Consensus 192 ~~Av~~v~~~g-------~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~--------- 255 (401)
++|+..+.+.+ .+.+..|++++|| .++.||+|++... +.+.+-+.++|.++.|+
T Consensus 180 a~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 180 AKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred HHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------CcccccccceeEEEecCCCcccccCc
Confidence 99999998763 2445699999999 8999999998743 33456678899999987
Q ss_pred ----CCCHHHHHHH-----------HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHH
Q 015737 256 ----IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDD 320 (401)
Q Consensus 256 ----I~~~~~i~~~-----------le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~ 320 (401)
|++++++..| ++.|...|++++++.+.+++.+|+++ |++ +||++|++ ++.||.|
T Consensus 250 gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~-----Sk~eLrr 318 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQIN-----SKFDLRR 318 (537)
T ss_pred ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEec-----cHhhHHH
Confidence 6788877654 56778899999999999999888875 665 68999876 4899999
Q ss_pred HHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE----------------cCeEEEEccCCCHHHHHHHHHHHHHHHHH
Q 015737 321 IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----------------KDSTLIVTDGSTRAAVEKRISEIRSLAEV 384 (401)
Q Consensus 321 Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~----------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~ 384 (401)
+|+..||+++++ +..+.++.+|+|++|+.. ....|+++||+++..+|+.+|.+.|.+..
T Consensus 319 lcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~t 393 (537)
T KOG0362|consen 319 LCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNT 393 (537)
T ss_pred HHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHH
Confidence 999999999996 777888999999987754 24469999999999999999999999873
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-49 Score=386.92 Aligned_cols=315 Identities=19% Similarity=0.303 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCcc
Q 015737 41 SATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCT 120 (401)
Q Consensus 41 ~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTT 120 (401)
.++..|+++.++++|.++|++||+.|.||+.++.|.++.||||..|+++|++.||+ |+-+.+++.+||+|+|||||
T Consensus 19 kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqdeevgdgtt 94 (527)
T KOG0364|consen 19 KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTT 94 (527)
T ss_pred cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccccccCCce
Confidence 45566789999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh---hhHhhhhhccC------CchhHHHHH
Q 015737 121 TSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH---ELADVAAVSAG------NDYTVGKMI 191 (401)
Q Consensus 121 t~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~l~~va~ts~~------~~~~la~li 191 (401)
||++|++|+|..+..++++|+||+.++++|.+|++.++..++.++.+++.+ .+.++...+.. |++.++++.
T Consensus 95 svi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~la 174 (527)
T KOG0364|consen 95 SVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLA 174 (527)
T ss_pred eeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHH
Confidence 999999999999999999999999999999999999999999888887643 67767665543 578899999
Q ss_pred HHHHHhhccC-Cc---------EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC----
Q 015737 192 SDALQQVGRN-GV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (401)
Q Consensus 192 ~~Av~~v~~~-g~---------I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~---- 257 (401)
.+|+++++.+ |. +.+.+|+.++|| ++++|+.+.++..|| +|+..++||+|.++|+++.
T Consensus 175 l~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hp-------kmrr~IenprivLlD~~LeykkG 246 (527)
T KOG0364|consen 175 LDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHP-------KMRRAIENPRIVLLDCPLEYKKG 246 (527)
T ss_pred HHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcH-------HHHHHhhcCcEEEecCCccCCCC
Confidence 9999999864 43 334699999999 999999999999998 4888999999999999752
Q ss_pred --------------------CHHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccccccc
Q 015737 258 --------------------NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (401)
Q Consensus 258 --------------------~~~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~ 317 (401)
+.+++..+++.|....+++|++.++++|.+.++|.++++ .+ +++.+|.|
T Consensus 247 eSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i------T~-----~rr~rKtD 315 (527)
T KOG0364|consen 247 ESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI------TA-----IRRLRKTD 315 (527)
T ss_pred ccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc------hh-----hhhhhccc
Confidence 113445677888899999999999999999999998874 55 47899999
Q ss_pred HHHHHHHhCCeEEecCCCCcccCCCCCCcee-eeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHH
Q 015737 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSL 381 (401)
Q Consensus 318 Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~-~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~ 381 (401)
..||+++|||+++++ ++++.+.+.|+ |+.|++. ++.|||++||+++++++|.+|.|+|+
T Consensus 316 n~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda 390 (527)
T KOG0364|consen 316 NNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDA 390 (527)
T ss_pred cchhhhhcCceeccC-----hhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhH
Confidence 999999999999996 99999999995 8899875 68899999999999999999999999
Q ss_pred HH
Q 015737 382 AE 383 (401)
Q Consensus 382 l~ 383 (401)
+.
T Consensus 391 ~~ 392 (527)
T KOG0364|consen 391 MG 392 (527)
T ss_pred HH
Confidence 85
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-44 Score=347.09 Aligned_cols=327 Identities=22% Similarity=0.357 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhccccccCCCcc
Q 015737 41 SATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCT 120 (401)
Q Consensus 41 ~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTT 120 (401)
.+...|++++..+.+.+++.+||+|..||++++.|++.+|+||.+.+++|+++||. |-++..++..||+..|||||
T Consensus 17 aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 17 AALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred cceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCcc
Confidence 56778888999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchhhhHhhhhhccCC------chhHHHHHHHH
Q 015737 121 TSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGN------DYTVGKMISDA 194 (401)
Q Consensus 121 t~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~------~~~la~li~~A 194 (401)
|+|+|.++|++++..++..|+||..|.+||+.|.+.++++|+..+.+++.+.|..+++|+++. .+.+.+++++|
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence 999999999999999999999999999999999999999999888777766899999999986 37888999999
Q ss_pred HHhhcc-CCcEEe-------eCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCC---------
Q 015737 195 LQQVGR-NGVVTI-------EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--------- 257 (401)
Q Consensus 195 v~~v~~-~g~I~i-------~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~--------- 257 (401)
+..+.+ ++.|.+ -...+..|+ .+++|+++|+|..|| .||+..+|+.||++|.+++
T Consensus 173 Vl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHp-------dmp~~~e~a~iL~~NvSLEYEK~Einsg 244 (520)
T KOG0359|consen 173 VLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHP-------DMPRRVEDAYILICNVSLEYEKPEINSG 244 (520)
T ss_pred heeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCc-------ccccchhceEEEEeeccccccccccccc
Confidence 998873 333321 245566788 799999999999999 4999999999999998652
Q ss_pred ----CHHHH-----------HHHHHHHHHcCCC----EEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccH
Q 015737 258 ----NPKDM-----------FKILDSAVKEKYP----IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (401)
Q Consensus 258 ----~~~~i-----------~~~le~i~~~g~~----lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~L 318 (401)
+++|- .+-+++|.+.+.. +||.+++|||..|+.|+.++ |+| +||.++..|
T Consensus 245 ffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~g------Ila-----LRRAKRRNm 313 (520)
T KOG0359|consen 245 FFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSG------ILA-----LRRAKRRNM 313 (520)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcc------hHH-----HHHHhhhhH
Confidence 23331 1224566655543 35668899999999999886 477 478899999
Q ss_pred HHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLAE 383 (401)
Q Consensus 319 e~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~ 383 (401)
||+..+|||..++ +++|++++.||+|+.|++. +.+|||+.+|+|++.+.+..+.+||.|.
T Consensus 314 ERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglr 388 (520)
T KOG0359|consen 314 ERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLR 388 (520)
T ss_pred HHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHH
Confidence 9999999999999 5999999999999999864 7999999999999999999999999886
Q ss_pred HH-----------hcccceeeeh
Q 015737 384 VV-----------LLVSFYIVLV 395 (401)
Q Consensus 384 ~~-----------~~~~~~~~~~ 395 (401)
.+ +.|+||+.+.
T Consensus 389 av~ntl~d~~~i~Gaga~~va~~ 411 (520)
T KOG0359|consen 389 AVKNTLEDKCGIPGAGAFEVALG 411 (520)
T ss_pred HHHHHhhhcccccCchHHHHHHH
Confidence 32 2677887654
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=281.79 Aligned_cols=232 Identities=25% Similarity=0.370 Sum_probs=212.0
Q ss_pred ceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhc
Q 015737 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (401)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 110 (401)
.|...+| -++.+.++-+.++++.+++||+||+|++|+.+.+.|++.+|||| .|+. ++++...+..
T Consensus 20 ~~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv~LS~s 84 (400)
T KOG0357|consen 20 RKDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIVILSKS 84 (400)
T ss_pred CCchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHHHhccc
Confidence 3455667 68999999999999999999999999999999999999999999 6788 9999999999
Q ss_pred cccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchhhhHhhhhhccCCchhHHHH
Q 015737 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKM 190 (401)
Q Consensus 111 qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~~~la~l 190 (401)
|+.++|||||.+++|++.+++++..++..|+||..|.+||..+...+.+.|.+.+.+++
T Consensus 85 qd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e--------------------- 143 (400)
T KOG0357|consen 85 QDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE--------------------- 143 (400)
T ss_pred chhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc---------------------
Confidence 99999999999999999999999999999999999999999999999999988765542
Q ss_pred HHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHHHH
Q 015737 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (401)
Q Consensus 191 i~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~i~ 270 (401)
+.+++++++
T Consensus 144 -----------------------------------------------------------------------f~emi~~vK 152 (400)
T KOG0357|consen 144 -----------------------------------------------------------------------FEEMIQQIK 152 (400)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 455688999
Q ss_pred HcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeee
Q 015737 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (401)
Q Consensus 271 ~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~ 350 (401)
++|.+++||+|+|||+|.++|..|++ -||||.| --++|-||.+|||+++++ +++++++.||+|+
T Consensus 153 ~~ga~l~icqwgfddeanhll~~n~l------pavrwVG-----GpEiEliAiaT~grIVpr-----F~eL~~~kLG~ag 216 (400)
T KOG0357|consen 153 ETGANLAICQWGFDDEANHLLLQNNL------PAVRWVG-----GPEIELIAIATGGRIVPR-----FSELTAEKLGFAG 216 (400)
T ss_pred hhCCcEEEEecccCchhhhHHhhcCC------CceeecC-----CcceEEEEeecCCeeecc-----HhhhCHhhccccc
Confidence 99999999999999999999999986 5787765 456899999999999996 9999999999999
Q ss_pred EEEEE-----------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 015737 351 KVVIT-----------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVV 385 (401)
Q Consensus 351 ~v~v~-----------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~ 385 (401)
.|+.. ++..||..||+|+-+++|..|+|+|+|..+
T Consensus 217 lVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvi 268 (400)
T KOG0357|consen 217 LVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVI 268 (400)
T ss_pred eEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHH
Confidence 98863 578899999999999999999999999843
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.93 E-value=2.7e-25 Score=206.84 Aligned_cols=172 Identities=31% Similarity=0.436 Sum_probs=153.4
Q ss_pred hhHhhhhhccC-----CchhHHHHHHHHHHhhcc------CCcE--EeeCCCCccceeEEEeceEEeecccCcccccccc
Q 015737 172 ELADVAAVSAG-----NDYTVGKMISDALQQVGR------NGVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238 (401)
Q Consensus 172 ~l~~va~ts~~-----~~~~la~li~~Av~~v~~------~g~I--~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~ 238 (401)
+|.++|+|+++ +++.+++++++|+..+++ .+.| ...+|++++|| ++++|++|++++.||+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 57889999998 789999999999999987 2444 44689999999 9999999999999985
Q ss_pred cceeEeeCceEEEecccCCCHHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccH
Q 015737 239 KRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (401)
Q Consensus 239 ~~~~~i~n~~Ill~d~~I~~~~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~L 318 (401)
|+++++||+|++++++|+. +|+++++|++.++++|..++ |++|+ ++++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~-----~~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVR-----RVKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEE-----eCCHHHH
Confidence 7899999999999999876 88999999999999998875 58874 5789999
Q ss_pred HHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE---------------cCeEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---------------KDSTLIVTDGSTRAAVEKRISEIRSLAE 383 (401)
Q Consensus 319 e~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~---------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~ 383 (401)
+|||++|||+++++ +++++++.||+|+.|++. +..|||++||++...++|.+|.++|++.
T Consensus 127 ~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~ 201 (209)
T cd03333 127 ERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALC 201 (209)
T ss_pred HHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHH
Confidence 99999999999995 888889999999998875 4679999999999999999999999996
Q ss_pred H
Q 015737 384 V 384 (401)
Q Consensus 384 ~ 384 (401)
.
T Consensus 202 ~ 202 (209)
T cd03333 202 A 202 (209)
T ss_pred H
Confidence 4
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.92 E-value=2e-24 Score=207.79 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=151.8
Q ss_pred CchhHHHHHHHHHHhhccC----------Cc--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEE
Q 015737 183 NDYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (401)
Q Consensus 183 ~~~~la~li~~Av~~v~~~----------g~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Il 250 (401)
|.+.|++++++|+..+.++ .. |.+.+|++++|| ++++|+++++++.++ +||++++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4689999999999998532 12 344689999999 999999999998876 589999999999
Q ss_pred EecccCC------CHHH-----------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 251 LVDKKIK------NPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 251 l~d~~I~------~~~~-----------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
+++++|. ++++ +...+++|++.|+++||++++|++.++++|.+++ |++| +++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v-----~~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLV-----LNV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEE-----Eec
Confidence 9999874 2222 3346789999999999999999999999999886 4776 567
Q ss_pred ccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE--------------------cCeEEEEccCCCHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT--------------------KDSTLIVTDGSTRAAVEK 373 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~--------------------~~~~tIi~~g~~~~~l~e 373 (401)
++++|+|||++|||+++++. .++++++.||+|+.|++. +..+||++||++.+.++|
T Consensus 160 ~~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde 235 (261)
T cd03334 160 KPSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKK 235 (261)
T ss_pred CHHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHH
Confidence 89999999999999999941 347788899999877753 357899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 015737 374 RISEIRSLAEVVL 386 (401)
Q Consensus 374 ~~~~l~~~l~~~~ 386 (401)
.+|.++|++..+-
T Consensus 236 ~eR~i~Dal~v~~ 248 (261)
T cd03334 236 VKRVVEFMVFAAY 248 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997443
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.26 E-value=3.7e-11 Score=133.41 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=146.4
Q ss_pred CchhHHHHHHHHHHhhccC----------Cc--EEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEE
Q 015737 183 NDYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (401)
Q Consensus 183 ~~~~la~li~~Av~~v~~~----------g~--I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Il 250 (401)
|.+.+..++.+|...+.++ +. |+.+.||...|| +++.|+++.+...|. .|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceE
Confidence 4578888999999988764 23 455689999999 999999999998775 588899999999
Q ss_pred EecccC---------CCHHH--------HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCcccc
Q 015737 251 LVDKKI---------KNPKD--------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (401)
Q Consensus 251 l~d~~I---------~~~~~--------i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~ 313 (401)
++.++| .+.+. +...+.+|....++++++.++|++.|.++|-.-.+ ..| -++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I------~lv-----lnv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGI------SLV-----LNV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCe------EEE-----Eec
Confidence 998853 33322 33456788888999999999999999999866543 222 267
Q ss_pred ccccHHHHHHHhCCeEEecCCCCcccCCCCCCceeeeEEEEE--------------------cCeEEEEccCCCHHHHHH
Q 015737 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT--------------------KDSTLIVTDGSTRAAVEK 373 (401)
Q Consensus 314 ~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~~~~v~v~--------------------~~~~tIi~~g~~~~~l~e 373 (401)
+..-|+||+++|||.+++ +++.++...||+|..|++. +.+|||++||++...+.+
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkk 548 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKK 548 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHH
Confidence 788899999999999998 4888999999999998864 689999999999999887
Q ss_pred HHHHHH--------HHHHHHhcccceee
Q 015737 374 RISEIR--------SLAEVVLLVSFYIV 393 (401)
Q Consensus 374 ~~~~l~--------~~l~~~~~~~~~~~ 393 (401)
..+-.+ -+||..-+.+++..
T Consensus 549 VK~Vvq~~v~aay~l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 549 VKHVVQYLVFAAYHLALETSFLADEGAS 576 (1598)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCc
Confidence 665443 34444445555443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00016 Score=76.42 Aligned_cols=95 Identities=40% Similarity=0.555 Sum_probs=84.2
Q ss_pred HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCC
Q 015737 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEV 345 (401)
Q Consensus 266 le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~ 345 (401)
++...+.+.+++++.++..++++..++.|.+++.+++++|+.|+|++.++..|++++.+||.++.+++.| .....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence 4555677778999999999899999999999999999999999999999999999999999999998654 15678
Q ss_pred ceeeeEEEEEcCeEEEEccC
Q 015737 346 LGTAIKVVITKDSTLIVTDG 365 (401)
Q Consensus 346 LG~~~~v~v~~~~~tIi~~g 365 (401)
+|.|..+...++.+++..+.
T Consensus 312 ~~ga~~v~~~~d~t~~~~G~ 331 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLGE 331 (524)
T ss_pred ccCceEEeecccCceeecCc
Confidence 99999999999888888864
No 47
>PRK14104 chaperonin GroEL; Provisional
Probab=57.69 E-value=14 Score=39.59 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=27.1
Q ss_pred cCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 015737 356 KDSTLIVTDGSTRAAVEKRISEIRSLAEVV 385 (401)
Q Consensus 356 ~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~ 385 (401)
+..+||++||+++..++|++|.++|++..+
T Consensus 374 ~~~atI~irG~t~~~l~e~~r~i~Dal~a~ 403 (546)
T PRK14104 374 GGVAVIRVGGATEVEVKERKDRVDDAMHAT 403 (546)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999744
No 48
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=37.20 E-value=43 Score=36.41 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=23.0
Q ss_pred eEEEEccCCCHHHHHHHHHHHHHHHHH
Q 015737 358 STLIVTDGSTRAAVEKRISEIRSLAEV 384 (401)
Q Consensus 358 ~~tIi~~g~~~~~l~e~~~~l~~~l~~ 384 (401)
.++|.+||++...++|++|.++|+|..
T Consensus 430 ~aiI~vgG~t~~~l~E~er~i~DAl~a 456 (600)
T PLN03167 430 VAVIQVGAQTETELKEKKLRVEDALNA 456 (600)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 344449999999999999999999974
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=34.03 E-value=1.8e+02 Score=23.15 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCe
Q 015737 264 KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328 (401)
Q Consensus 264 ~~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~ 328 (401)
+.++.+.+-...+|++++|+++...+.+..--.+-+++++-| | -+++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~--------s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--K--------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--C--------CHHHHHHHhCCC
Confidence 345556556678999999999887764432111112344332 2 267777777754
No 50
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=31.81 E-value=79 Score=30.44 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCe
Q 015737 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328 (401)
Q Consensus 266 le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~ 328 (401)
+|++.+..++|||......++..+.|...++ .|..+......+ -.+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~-~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGV----EATFLNLTSVDG-MKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCC----cEEEEcCCCHHH-HHHHHHHHHHHhCCH
Confidence 6788888888888877777766666655443 454443222111 245677888888754
No 51
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=30.90 E-value=1.4e+02 Score=25.06 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred EEecccCCCHHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 015737 250 LLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIR 293 (401)
Q Consensus 250 ll~d~~I~~~~~i~~~le~i~~~g~~lvIi~~~I~~~al~~L~~ 293 (401)
.+.|+ ++++.....++.+.+.|+|+|+...+++++-++.+..
T Consensus 70 VvIDf--T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDF--TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEE--S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEc--CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 34455 3788888899999999999999999999877776654
No 52
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=30.24 E-value=4.8e+02 Score=24.75 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCcc-------hHHHHHH-HHhcccCcceEEEEecCCccccccccHHHHHHHhCC
Q 015737 258 NPKDMFKILDSAVKEKYPIVIVAEDIE-------QQALALL-IRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327 (401)
Q Consensus 258 ~~~~i~~~le~i~~~g~~lvIi~~~I~-------~~al~~L-~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa 327 (401)
+...+.++++...+..++++++++|+. ..+...+ ...-.+...+|+|| .|+....++-++-+..|-
T Consensus 15 ~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~av----pGNcD~~~v~~~l~~~~~ 88 (226)
T COG2129 15 SEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAV----PGNCDPPEVIDVLKNAGV 88 (226)
T ss_pred chHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEE----cCCCChHHHHHHHHhccc
Confidence 334456667777777899999999998 1112210 11111234577776 356666666666554333
No 53
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=29.44 E-value=69 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHhhHHHHHcCCChhhHHHHH
Q 015737 125 LAQGLIAEGVKVIAAGMNPVQIARGI 150 (401)
Q Consensus 125 La~~LL~~~~~li~~G~~p~~I~~g~ 150 (401)
|-.+-|+-+.+|++.|+||..+..-+
T Consensus 19 Ld~etL~ici~L~e~GVnPeaLA~vI 44 (48)
T PF12554_consen 19 LDRETLSICIELCENGVNPEALAAVI 44 (48)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 44556777888999999998776544
No 54
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=28.99 E-value=2.3e+02 Score=23.87 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=37.9
Q ss_pred CceEEEec---ccCCCHHHHHHHHHHHHHcCCCEEEEec-C-----------cchHHHHHHHHhcc
Q 015737 246 DGKLLLVD---KKIKNPKDMFKILDSAVKEKYPIVIVAE-D-----------IEQQALALLIRNKL 296 (401)
Q Consensus 246 n~~Ill~d---~~I~~~~~i~~~le~i~~~g~~lvIi~~-~-----------I~~~al~~L~~n~~ 296 (401)
+.+|+.+. ..|++.++.+.++-.+..+|++.+++.+ . +.++.||.|+..++
T Consensus 5 ~~~v~~~~s~~~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~i 70 (113)
T PF13788_consen 5 GIRVAEVSSDEPLISDEQDALDLIGTAYEHGADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRI 70 (113)
T ss_pred CeEEEEEeCCCCeecchhHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhce
Confidence 45666654 3589999999999988999998776643 3 34778888877765
No 55
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.65 E-value=1.1e+02 Score=26.90 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCC-ccccccccHHHHHHHhCCe
Q 015737 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA-FGERKSHYLDDIAILTGGL 328 (401)
Q Consensus 266 le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~-~~~~~~~~Le~Ia~~tGa~ 328 (401)
+|++.+.+++|||............|...++ .+..+..+. +. --.+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~-~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGI----PVVVLPAASSLD-EIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCC----cEEEeCCCCCHH-HHHHHHHHHHHHhCCh
Confidence 6778888888888765544445555554443 344443321 11 1245677888888864
No 56
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=28.53 E-value=1.7e+02 Score=24.65 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=44.8
Q ss_pred CHHHHHHHHHH-HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCc----cccccccHHHHHHHhCC
Q 015737 258 NPKDMFKILDS-AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAF----GERKSHYLDDIAILTGG 327 (401)
Q Consensus 258 ~~~~i~~~le~-i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~----~~~~~~~Le~Ia~~tGa 327 (401)
+.+++.+.+++ +.+.+.-++++.+.+.+..-..+...+ ..++ +.|-+|+. .+.+..-++++.+++|.
T Consensus 44 ~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~P-aIieIP~k~~~y~~~~d~i~~~~~~~~~~ 115 (115)
T TIGR01101 44 TVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIP-AVLEIPSKDHPYDASKDSILRRARGMFNP 115 (115)
T ss_pred CHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCC-EEEEECCCCCCCCCcccHHHHHHHHHcCC
Confidence 45788888888 556677889999988887776665533 4444 34567763 33345567788777763
No 57
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.78 E-value=72 Score=31.64 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=36.4
Q ss_pred EeeCceEEEecccCCCH-----HHHHHHHHHHHH-cCCCEEEEecCcchH
Q 015737 243 EFHDGKLLLVDKKIKNP-----KDMFKILDSAVK-EKYPIVIVAEDIEQQ 286 (401)
Q Consensus 243 ~i~n~~Ill~d~~I~~~-----~~i~~~le~i~~-~g~~lvIi~~~I~~~ 286 (401)
-+..|.+|+.|.++.+. .|++|++|.+.+ .+.|++-+.-++++.
T Consensus 143 LLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 143 LLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred HhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 34678999999998765 479999999864 688999999999873
No 58
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.97 E-value=3.3e+02 Score=21.46 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCEEEEecCcchHHHHHHHH-hcccCcceEEEEecCCccccccccHHHHHHHhCCe
Q 015737 265 ILDSAVKEKYPIVIVAEDIEQQALALLIR-NKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328 (401)
Q Consensus 265 ~le~i~~~g~~lvIi~~~I~~~al~~L~~-n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~ 328 (401)
.++.+.+..+.+||++.|.++.....+.. .+.. .+++.- ....++|..++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~-~Vpv~~----------~~t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEK-SIKIVY----------IDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhC-CCCEEE----------eCCHHHHHHHHCCc
Confidence 34556666678999999999877665532 1111 123311 23467788888754
No 59
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.93 E-value=1.8e+02 Score=25.60 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHcCCCEEEEecCcchH-HHHHHHHhcccCcceEEEEecCCcccc--ccccHHHHHHHhC
Q 015737 266 LDSAVKEKYPIVIVAEDIEQQ-ALALLIRNKLRGVLKAAAIKAPAFGER--KSHYLDDIAILTG 326 (401)
Q Consensus 266 le~i~~~g~~lvIi~~~I~~~-al~~L~~n~~~g~~~v~aVk~p~~~~~--~~~~Le~Ia~~tG 326 (401)
+|++.+.+++|+|......+. ....|...++ .+..+..+ +.. ..+.++.++.++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gI----pvv~i~~~--~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGI----PVLYVNEY--PSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCC----CEEEeCCC--CChhhHHHHHHHHHHHcC
Confidence 577888888888876555443 5566655443 45555321 111 1244666777776
No 60
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=22.80 E-value=1.1e+02 Score=24.32 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeec
Q 015737 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQN 72 (401)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~ 72 (401)
++.+..+...+..+++.++..|||.|.+..+.+
T Consensus 45 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 45 PEERAELMQLVQKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeeccccc
Confidence 678899999999999999999999999877654
No 61
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.79 E-value=83 Score=28.10 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=29.4
Q ss_pred eeCceEEEecccCCCH-----HHHHHHHHHHHHcCCCEEEEecCcc
Q 015737 244 FHDGKLLLVDKKIKNP-----KDMFKILDSAVKEKYPIVIVAEDIE 284 (401)
Q Consensus 244 i~n~~Ill~d~~I~~~-----~~i~~~le~i~~~g~~lvIi~~~I~ 284 (401)
+.+|+++++|.+.+.. +.+.++++.+.+.|..++++.-+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 3589999999986543 4566677777666888888776543
No 62
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=22.42 E-value=28 Score=36.97 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=48.2
Q ss_pred CCCEEEEecCcch-----HHHHHHHHhcccCc----ceEEEEecCCccccccccHHHHHHHhCCeEEec
Q 015737 273 KYPIVIVAEDIEQ-----QALALLIRNKLRGV----LKAAAIKAPAFGERKSHYLDDIAILTGGLVIRD 332 (401)
Q Consensus 273 g~~lvIi~~~I~~-----~al~~L~~n~~~g~----~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~ 332 (401)
..++.|..+++++ +++..+..+++++. +++++++.| +++...+.|++...+++.++..+
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 4477888888888 77887888877653 489999999 89999999999999888887765
No 63
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.31 E-value=2.2e+02 Score=25.77 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEEecCc-chHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCe
Q 015737 266 LDSAVKEKYPIVIVAEDI-EQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328 (401)
Q Consensus 266 le~i~~~g~~lvIi~~~I-~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~ 328 (401)
+|++.+.+++|||..... .......+.... ++++.+..+....--.+.++.|+.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~----ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAG----IPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTT----SEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhccc----ceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 588889999999988877 444444444444 47777765432123367788999999976
No 64
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=21.36 E-value=3.3e+02 Score=26.11 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecC-CC
Q 015737 258 NPKDMFKILDSAVKEKYPIVIVA-EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE-MG 335 (401)
Q Consensus 258 ~~~~i~~~le~i~~~g~~lvIi~-~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~-~g 335 (401)
+++-+.+++.++.++|++++++. +.+.|+-| .+-++.+|+.+|+++.--. .=
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l--------------------------~erl~~lak~~~~rv~~pSGAi 122 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGL--------------------------RERLRELAKCGGARVYLPSGAI 122 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHH--------------------------HHHHHHHHhcCCcEEEecCccc
Confidence 45566777888888888887654 33333211 1225667888888776521 10
Q ss_pred CcccCCCCCCceeeeEEEEE------------cCeEEEEccCCCHHHHHHHHHHHHHHHHHHhcccceee
Q 015737 336 LTLDKAGKEVLGTAIKVVIT------------KDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIV 393 (401)
Q Consensus 336 ~~~~~~~~~~LG~~~~v~v~------------~~~~tIi~~g~~~~~l~e~~~~l~~~l~~~~~~~~~~~ 393 (401)
-.+|-+....+|..+.|..+ ++..|++-.|+-.+....-=++++-+..-.+.|.|+=+
T Consensus 123 GGlD~l~aar~g~i~~V~lttrKpp~~lg~dl~~~ktVlfeG~a~eA~k~FPkNiNVAaTlsLA~~~e~v 192 (255)
T COG1712 123 GGLDALAAARVGGIEEVVLTTRKPPAELGIDLEDKKTVLFEGSASEAVKKFPKNINVAATLSLAGGFERV 192 (255)
T ss_pred hhHHHHHHhhcCCeeEEEEEeecChHHhCcCcccCceEEEeccHHHHHHhCcccccHHHHHHhhccccce
Confidence 01455566667777777765 23677888887777777777777777766666665543
No 65
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=20.33 E-value=2.8e+02 Score=20.61 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcc-ccccchhhhHhhhhhccC
Q 015737 128 GLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT-SREVEDHELADVAAVSAG 182 (401)
Q Consensus 128 ~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~l~~va~ts~~ 182 (401)
.|.+.+..+...|+++.. .+...+...+..+++. .-|+++.++..+++.+++
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPPLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455666666777888777 5555555555555543 456666577777766543
No 66
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.08 E-value=1.5e+02 Score=26.62 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=30.2
Q ss_pred eeCceEEEecccCCCH-----HHHHHHHHHHHHcCCCEEEEecCcch
Q 015737 244 FHDGKLLLVDKKIKNP-----KDMFKILDSAVKEKYPIVIVAEDIEQ 285 (401)
Q Consensus 244 i~n~~Ill~d~~I~~~-----~~i~~~le~i~~~g~~lvIi~~~I~~ 285 (401)
+.+|+++++|.+.+.. +.+.++++++.+.|..++++.-+.++
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 3589999999986543 45566677666667888888887654
Done!