BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015738
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 119/288 (41%), Gaps = 49/288 (17%)
Query: 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEI 88
L A +T LHI E V +E + C + KG TPLH+AAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 89 VRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP 148
+L+ER D P + T LH AV N+D+VK+L
Sbjct: 162 AELLLER-------DAHPNAA-----------GKNGLTPLHVAVHHNNLDIVKLLLPRG- 202
Query: 149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD------------------MV 190
G P+S G TPL++AA+ +N+ ++ R LL+ SA+ + MV
Sbjct: 203 GSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYA 250
LL + + +G T LH A T + G+TP+H A
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
++YGN + V LL+ Q+ N A + LH AA +G V ++
Sbjct: 319 SHYGNIKLVKFLLQ-HQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 127/311 (40%), Gaps = 62/311 (19%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIE-RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
N K +TPLH+AA+ GH E+ + L++ +AK+ + ++ T L
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-------------------QTPL 84
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS---- 184
H A G+ ++VK+L E+ P A G TPL++AA E + + LLE S
Sbjct: 85 HCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACM 142
Query: 185 -----------ASFDMVLA---LLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXX 230
A + V LLE + G NG T LH A + +D
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NLDIVKLLLPR 201
Query: 231 XXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD 290
+ G+TP+H AA LL+ SA+ A+ + +T LHLAA +G
Sbjct: 202 GGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGH 257
Query: 291 ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG---DA 347
A V ++S L + G LH HV P+A LI G DA
Sbjct: 258 AEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHV----------PVADVLIKHGVMVDA 306
Query: 348 E---GNTPLHV 355
G TPLHV
Sbjct: 307 TTRMGYTPLHV 317
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
V+E+L P+LLLQ + G PLH + F EI L+ + + D +SG PF
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
H A S GN++VVK L + P P N G T L++A
Sbjct: 77 --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
F++ L+EN SV +
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
D++ P+H AA G+ + + LL +SA N DK H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
+ ++ Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSL 341
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 342 IDEGDAEGNTPLHVLAAVRPKE-FHDVMNRSTQANYDAVNKQNVSVRHV 389
D D G TP H+ +V E + +R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
V+E+L P+LLLQ + G PLH + F EI L+ + + D +SG PF
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
H A S GN++VVK L + P P N G T L++A
Sbjct: 77 --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
F++ L+EN SV +
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
D++ P+H AA G+ + + LL +SA N DK H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
+ ++ Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSL 341
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 342 IDEGDAEGNTPLHVLAAVRPKE-FHDVMNRSTQANYDAVNKQNVSVRHV 389
D D G TP H+ +V E + +R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
V+E+L P+LLLQ + G PLH + F EI L+ + + D +SG PF
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
H A S GN++VVK L + P P N G T L++A
Sbjct: 77 --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
F++ L+EN SV +
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
D++ P+H AA G+ + + LL +SA N DK H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
+ ++ Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSL 341
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 342 IDEGDAEGNTPLHVLAAVRPKE-FHDVMNRSTQANYDAVNKQNVSVRHV 389
D D G TP H+ +V E + +R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 33/176 (18%)
Query: 59 LEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL----AQRGDEEPESGVEPFR 114
L K AL+ +A+G T LHLAAK GH+E+V+ L+ ++ G P ++
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 115 QM------------IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL 162
+ I + +NE+N LH A G VD+ +IL ++ N +G +PL
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPL 181
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS 218
++AA ENR +D V+ L + V+ + G+T L A++ S
Sbjct: 182 HIAAR-ENR---------------YDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 34/211 (16%)
Query: 75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPES---------GVEPFRQMIRM------ 119
+PLH AA+ GH +I +L++ E+ + +E + +I+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
+ E +T LH A +G+ +VV+ L ++ G TP+ A EY++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH--------- 123
Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXET 239
D+V LL + ++ LH AA S VD A
Sbjct: 124 -------VDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHA--V 173
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSAS 270
+ +G +P+H AA Y V L L D +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 23/187 (12%)
Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
+M + K + LH A G+VD+ +L + + + +TPL AAE +
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNH------- 56
Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXX 237
+ V L++ V + G T LH AA +
Sbjct: 57 ---------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY--EVVQYLLSNGQMDVN 105
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
D GWTP+ +A Y + V LLL + S NI D + + LH AA G E +
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENI-CLHWAAFSGCVDIAEIL 163
Query: 298 ISGNPKC 304
++ KC
Sbjct: 164 LAA--KC 168
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 27 RLLTAKAKNTILHINIISSERENVSTKF--------VEEILEKCPALLLQVNAKGDTPLH 78
+LL +K + INI +E EN+ + + EIL L VN GD+PLH
Sbjct: 128 KLLLSKGSD----INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 79 LAAKFGHFEIVRVLIER 95
+AA+ ++ V + + R
Sbjct: 183 IAARENRYDCVVLFLSR 199
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 203 EGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLL 262
E N ++ LHAAA + VD DQ TP+ AA + V L
Sbjct: 7 EHQNKRSPLHAAA-EAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYL 63
Query: 263 LETDQSASNIADKDRK-MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMV 321
+ ++ + + KD + T LHLAA KG V+ ++S D+ G + +A
Sbjct: 64 I---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 322 SFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNK 381
HV ++ LL S I+ D E N LH A + +++ + + + AVN
Sbjct: 121 YKHVDLVKLLLSKG----SDINIRDNEENICLHWAAFSGCVDIAEIL-LAAKCDLHAVNI 175
Query: 382 QNVSVRHV 389
S H+
Sbjct: 176 HGDSPLHI 183
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
EN + V+++LE A + ++ G TPLHLAA+ GH E+V++L+ +
Sbjct: 13 ENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ------------ 59
Query: 108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
G +P + +++ T LH A G+ +VVK+L + P + ++ GKTPL++AAE
Sbjct: 60 -GADPNAK-----DSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAE 112
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
S++ + L+E + + D V LLEN V+ +GKT LH AA
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH---KEVVKLLLS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V LLL + + N D D K T LHLAA G
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHK 116
Query: 292 RTVERIIS 299
V+ ++S
Sbjct: 117 EVVKLLLS 124
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLR 176
+ +++ T LH A G+ +VVK+L + P + ++ GKTPL++AAE ++
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHK----- 83
Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXX 236
++V LL + + +GKT LH AA
Sbjct: 84 -----------EVVKLLLSQGADPNAKDSDGKTPLHLAAENGH---KEVVKLLLSQGADP 129
Query: 237 XETDQYGWTPIHYAAYYGNYRTVNLL 262
+D G TP+ A +GN V LL
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 18/77 (23%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
++ G TPLHLAA+ GH E+V++L+ + G +P +++ T L
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQ-------------GADP-----NTSDSDGRTPLD 141
Query: 130 EAVSQGNVDVVKILTRE 146
A GN +VVK+L ++
Sbjct: 142 LAREHGNEEVVKLLEKQ 158
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYEL 307
AA GN V LLE N +D D K T LHLAA G V+ ++S +P
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK-- 66
Query: 308 VDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
D+ G LH A + H ++ LL +P A+ D++G TPLH+ A KE
Sbjct: 67 -DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK------DSDGKTPLHLAAENGHKEV 118
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 37/144 (25%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAA+ GH E+V++L+ E+G + + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
G+++VVK+L + G +A + G+TPL++AA + ++V
Sbjct: 44 RNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAAR----------------NGHLEVVK 85
Query: 192 ALLENSTSVSHEGPNGKTALHAAA 215
LLE V+ + NG+T LH AA
Sbjct: 86 LLLEAGADVNAKDKNGRTPLHLAA 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 206 NGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLET 265
NG+T LH AA R+ ++ D+ G TP+H AA G+ V LLLE
Sbjct: 1 NGRTPLHLAA-RNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 266 DQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV 325
N DK+ + T LHLAA G V+ ++ D G LH A + H+
Sbjct: 58 GADV-NAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHL 114
Query: 326 GQLRNLLE 333
++ LLE
Sbjct: 115 EVVKLLLE 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 21/78 (26%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLHLAA+ GH E+V++L+E +G + + +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE-------------AGAD-----VNAKDKNGR 102
Query: 126 TALHEAVSQGNVDVVKIL 143
T LH A G+++VVK+L
Sbjct: 103 TPLHLAARNGHLEVVKLL 120
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIE 94
VNAK G TPLHLAA+ GH E+V++L+E
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 38/146 (26%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNA+ G TPLHLAA FGH EIV VL++ D GV P
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD---SLGVTP------------- 83
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
LH A +G++++V++L + S +++G TPL++AA+ RG LE
Sbjct: 84 --LHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAK--------RGHLE----- 127
Query: 186 SFDMVLALLENSTSVSHEGPNGKTAL 211
+V LL+N V+ + GKTA
Sbjct: 128 ---IVEVLLKNGADVNAQDKFGKTAF 150
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARTVERII 298
D GWTP+H AA++G+ V +LL ++ +++ KD +T LHLAA +G VE ++
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
N D+ G LH A H+ + LL+N
Sbjct: 101 K-NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A ++ G TPL++AA +
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNARDFTGWTPLHLAAHF----------------GH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+N V+ + G T LH AA R +D +G+TP
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH---LEIVEVLLKNGADVNASDSHGFTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAAKRGHLEIVEVLLK 134
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 27/120 (22%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
+ E+L K A VNAK G TPLHLAA+ GH EIV VL+ + G + S
Sbjct: 62 IVEVLLKNGA---DVNAKDSLGVTPLHLAARRGHLEIVEVLL------KNGADVNASDSH 112
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYEN 170
F T LH A +G++++V++L + G +A + +GKT ++ + N
Sbjct: 113 GF------------TPLHLAAKRGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGN 158
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V +LL+ + A T LHLAA +G
Sbjct: 69 NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN--ASDSHGFTPLHLAAKRGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ R LLE + D V L+ N V+ G T LH AA ++
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA---YSGHLEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
+D +G+TP+H AAY+G+ V +LL+ N D D MT LHLAA G
Sbjct: 69 HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T LH+ S E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
+ + G TPLHLAA +GH EIV VL+ ++G + + ++++
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLL-------------KNGAD-----VNAMDSDG 113
Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
T LH A G +++V++L + G +A + +GKT ++ + N
Sbjct: 114 MTPLHLAAKWGYLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L EA G D V+IL +A+N G TPL++AA S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAA----------------YSGHL 60
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
++V LL++ V G T LH AA ++ ++D G TP+
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGH-LEIVEVLLKNGADVNAMDSD--GMTPL 117
Query: 248 HYAAYYGNYRTVNLLLE 264
H AA +G V +LL+
Sbjct: 118 HLAAKWGYLEIVEVLLK 134
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N DN G LH A S H+ + LL++ + +D D G TPLH+
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG----ADVDASDVFGYTPLHL 86
Query: 356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHV-FNYGYTEL 397
A E +V+ ++ A+ +A++ ++ H+ +GY E+
Sbjct: 87 AAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEI 128
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
+D GWTP+H AAY+G+ V +LL+ + AD +T LHLAA +G VE ++
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYA 319
N D+ G LH A
Sbjct: 101 K-NGADVNANDHNGFTPLHLA 120
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 37/140 (26%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAA FGH EIV VL++ D GV P LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADD---SLGVTP---------------LHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
+G+++VV++L + G +AN++ G TPL++AA ++V
Sbjct: 89 DRGHLEVVEVLLKN--GADVNANDHNGFTPLHLAANI----------------GHLEIVE 130
Query: 192 ALLENSTSVSHEGPNGKTAL 211
LL++ V+ + GKTA
Sbjct: 131 VLLKHGADVNAQDKFGKTAF 150
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V +LL+ + A+ T LHLAA G
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN--ANDHNGFTPLHLAANIGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + ++ G TPLHLAA GH E+V VL++ D +G P
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND---HNGFTP-- 116
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
LH A + G++++V++L + G +A + +GKT ++ + N
Sbjct: 117 -------------LHLAANIGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ E +GKT LH AA++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D+ G TP+H AA YG+ V +LL+ + A T LHLAA G
Sbjct: 69 HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN--ATDTYGFTPLHLAADAGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + + T LH+ I E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
+ + GDTPLHLAA +GH EIV VL+ ++G + + +
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLL-------------KNGAD-----VNATDTYG 113
Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYENR 171
T LH A G++++V++L + Y N +GKT ++ + N
Sbjct: 114 FTPLHLAADAGHLEIVEVLLK----YGADVNAQDKFGKTAFDISIDNGNE 159
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A ++ GKTPL++AA ++G LE
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNAEDDSGKTPLHLAA--------IKGHLE------ 61
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
+V LL++ V+ G T LH AA+ TD YG+TP
Sbjct: 62 --IVEVLLKHGADVNAADKMGDTPLHLAALYGH---LEIVEVLLKNGADVNATDTYGFTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAADAGHLEIVEVLLK 134
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 45/224 (20%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
GDTPLH+A G+ V L+ L Q+G E + + NN + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRE-----------LDIYNNLRQTPLHLAV 54
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
VV++L P + + +G+T ++A E+ + + LR LL++ + D+
Sbjct: 55 ITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPT-CLRALLDSAAPGTLDL--- 109
Query: 193 LLENSTSVSHEGPN--GKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETD----QYGWTP 246
E N G TALH AV+T + D + G +P
Sbjct: 110 ----------EARNYDGLTALH------VAVNTECQETVQLLLERGADIDAVDIKSGRSP 153
Query: 247 IHYAAYYGNYRTVNLLLETDQSASNI-ADKDRKMTALHLAAGKG 289
+ +A + V LLL Q +N+ A +ALH A+G+G
Sbjct: 154 LIHAVENNSLSMVQLLL---QHGANVNAQMYSGSSALHSASGRG 194
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD--KDRKMTALHLAAGKGDARTVERI 297
D+ G TP+H A GN V+ L+ Q D + + T LHLA V +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 298 ISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
++ L D G H A LR LL++ ++ + +G T LHV
Sbjct: 66 VTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF--------RQMIRM-- 119
N G T LH+A E V++L+ER A + +SG P M+++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERG--ADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 120 -----VNNE---KNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENR 171
VN + ++ALH A +G + +V+ L R N + TPL M A
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPL-MVARSRRV 228
Query: 172 SDMLRG 177
D+LRG
Sbjct: 229 IDILRG 234
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 40/148 (27%)
Query: 68 QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
VNA+ GDTPLHLAA+ GH EIV VL+ ++G + + ++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLL-------------KNGAD-----VNALDFSG 80
Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRT 183
+T LH A +G++++V++L + G +A++ G TPL++AA+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLK--YGADVNADDTIGSTPLHLAAD---------------- 122
Query: 184 SASFDMVLALLENSTSVSHEGPNGKTAL 211
+ ++V LL+ V+ + GKTA
Sbjct: 123 TGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 25/120 (20%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + ++ G TPLHLAAK GH EIV VL++ +
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK------------------YG 103
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYENR 171
+ + +T LH A G++++V++L + Y N +GKT ++ + N
Sbjct: 104 ADVNADDTIGSTPLHLAADTGHLEIVEVLLK----YGADVNAQDKFGKTAFDISIDNGNE 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ E G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V +LL+ A AD T LHLAA G
Sbjct: 69 NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK--YGADVNADDTIGSTPLHLAADTGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A + YG TPL++AA
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNAEDTYGDTPLHLAARV----------------GH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+N V+ +G T LH AA R D G TP
Sbjct: 60 LEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH---LEIVEVLLKYGADVNADDTIGSTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAADTGHLEIVEVLLK 134
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 44/131 (33%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
D YG TP+H AA G+ V +LL+ D +A + + T LHLAA +G VE +
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS----TPLHLAAKRGHLEIVEVL 99
Query: 298 ISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA 357
L Y + ++ D G+TPLH+ A
Sbjct: 100 ------------------LKYG--------------------ADVNADDTIGSTPLHLAA 121
Query: 358 AVRPKEFHDVM 368
E +V+
Sbjct: 122 DTGHLEIVEVL 132
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAAK GH EIV VL++ + + +N T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLK------------------YGADVNAWDNYGATPLHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLE 180
G++++V++L + G +A +Y G TPL++AA Y+ +++ LL+
Sbjct: 89 DNGHLEIVEVLLKH--GADVNAKDYEGFTPLHLAA-YDGHLEIVEVLLK 134
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGD 290
D YG TP+H AA G+ V +LL + +++ KD + T LHLAA G
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLL---KHGADVNAKDYEGFTPLHLAAYDGH 125
Query: 291 ARTVERII 298
VE ++
Sbjct: 126 LEIVEVLL 133
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T +T LH+ + E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIV------EVLLKYGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
+ + G TPLHLAA GH EIV VL++ D E G P
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE---GFTP------------ 116
Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYENRS 172
LH A G++++V++L + Y N +GKT ++ + N
Sbjct: 117 ---LHLAAYDGHLEIVEVLLK----YGADVNAQDKFGKTAFDISIDNGNED 160
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A ++ G TPL++AA+ +
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNATDWLGHTPLHLAAK----------------TGH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+ V+ G T LH AA D G+TP
Sbjct: 60 LEIVEVLLKYGADVNAWDNYGATPLHLAADNGH---LEIVEVLLKHGADVNAKDYEGFTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AAY G+ V +LL+
Sbjct: 117 LHLAAYDGHLEIVEVLLK 134
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
EN + V++++E A + ++ G TPLH AAK GH EIV++LI + D +
Sbjct: 13 ENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 108 SGV-----EPFRQMIRMV----------NNEKNTALHEAVSQGNVDVVKILTREDPGYPY 152
+ + E +++++++ +++ T LH A +G+ ++VK+L +
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 153 SANNYGKTPLYMAAEYEN 170
S ++ G+TPL +A E+ N
Sbjct: 132 SDSD-GRTPLDLAREHGN 148
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
S++ + L+E + + D V L+EN V+ +G+T LH AA
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH---KEIVKLLIS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+HYAA G+ V LL+ + + N D D + T LH AA +G
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGR-TPLHYAAKEGHK 116
Query: 292 RTVERIIS 299
V+ +IS
Sbjct: 117 EIVKLLIS 124
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLH AAK GH EIV++LI + + +++
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG------------------ADVNTSDSDGR 137
Query: 126 TALHEAVSQGNVDVVKILTRE 146
T L A GN ++VK+L ++
Sbjct: 138 TPLDLAREHGNEEIVKLLEKQ 158
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLL 179
+++ T LH A +G+ ++VK+L + G +A + G+TPL+ AA+ ++
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISK--GADVNAKDSDGRTPLHYAAKEGHK-------- 83
Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXET 239
++V L+ V+ + +G+T LH AA +
Sbjct: 84 --------EIVKLLISKGADVNAKDSDGRTPLHYAAKEGH---KEIVKLLISKGADVNTS 132
Query: 240 DQYGWTPIHYAAYYGNYRTVNLL 262
D G TP+ A +GN V LL
Sbjct: 133 DSDGRTPLDLAREHGNEEIVKLL 155
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD 309
AA GN V L+E N +D D + T LH AA +G V+ +IS D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKD 67
Query: 310 NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
+ G LHYA H ++ L+ + ++ D++G TPLH A KE
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKG----ADVNAKDSDGRTPLHYAAKEGHKEI 118
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 37/141 (26%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G TPLHLAA GH EIV VL++ + + + T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGA------------------DVNARDTDGWTPLHLA 87
Query: 132 VSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
G++++V++L + G +A + YG TPL++AA+ RG LE +V
Sbjct: 88 ADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAAD--------RGHLE--------IV 129
Query: 191 LALLENSTSVSHEGPNGKTAL 211
LL++ V+ + GKTA
Sbjct: 130 EVLLKHGADVNAQDKFGKTAF 150
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHP-EIVEVLLKHG 70
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
+TD GWTP+H AA G+ V +LL+ A A +T LHLAA +G
Sbjct: 71 ADVNARDTD--GWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAADRGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + + G TPLHLAA GH EIV VL+ K + + G+ P
Sbjct: 62 IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL---KYGADVNAQDAYGLTP-- 116
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRS 172
LH A +G++++V++L + G +A + +GKT ++ + N
Sbjct: 117 -------------LHLAADRGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNED 160
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A ++ G TPL++AA +
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNAHDDQGSTPLHLAAWIGHP--------------- 60
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL++ V+ +G T LH AA D YG TP
Sbjct: 61 -EIVEVLLKHGADVNARDTDGWTPLHLAADNGH---LEIVEVLLKYGADVNAQDAYGLTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAADRGHLEIVEVLLK 134
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 20/120 (16%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
EN + V+++LE A ++ G TPLH AA+ GH EIV++L+ +
Sbjct: 13 ENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSK------------ 59
Query: 108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
G +P + +++ T LH A G+ ++VK+L + P + ++ G+TPL+ AAE
Sbjct: 60 -GADPNAK-----DSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAE 112
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L EA GN D VK L E+ P ++++ G+TPL+ AAE ++
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHK---------------- 50
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
++V LL + + +G+T LH AA D G TP+
Sbjct: 51 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGH---KEIVKLLLSKGADPNAKDSDGRTPL 107
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
HYAA G+ V LLL + + N +D D + T L LA G+ V+
Sbjct: 108 HYAAENGHKEIVKLLL-SKGADPNTSDSDGR-TPLDLAREHGNEEIVK 153
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
S++ + L+E + + D V LLEN + +G+T LH AA
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGH---KEIVKLLLS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+HYAA G+ V LLL + + N D D + T LH AA G
Sbjct: 59 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGR-TPLHYAAENGHK 116
Query: 292 RTVERIIS 299
V+ ++S
Sbjct: 117 EIVKLLLS 124
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 107 ESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAA 166
E+G +P +++ T LH A G+ ++VK+L + P + ++ G+TPL+ AA
Sbjct: 25 ENGADP-----NASDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAA 78
Query: 167 EYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXX 226
E ++ ++V LL + + +G+T LH AA
Sbjct: 79 ENGHK----------------EIVKLLLSKGADPNAKDSDGRTPLHYAAENGH---KEIV 119
Query: 227 XXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLL 262
+D G TP+ A +GN V LL
Sbjct: 120 KLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 18/77 (23%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
++ G TPLH AA+ GH EIV++L+ + G +P +++ T L
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSK-------------GADP-----NTSDSDGRTPLD 141
Query: 130 EAVSQGNVDVVKILTRE 146
A GN ++VK+L ++
Sbjct: 142 LAREHGNEEIVKLLEKQ 158
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYEL 307
AA GN V LLE + + N +D D + T LH AA G V+ ++S +P
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAK-- 66
Query: 308 VDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
D+ G LHYA + H ++ LL +P A+ D++G TPLH A KE
Sbjct: 67 -DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK------DSDGRTPLHYAAENGHKEI 118
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 37/140 (26%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLH+AA GH EIV VL+ +G + + V+ T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-------------RNGAD-----VNAVDTNGTTPLHLAA 76
Query: 133 SQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
S G++++V++L + G +A + G TPLY+AA + ++V
Sbjct: 77 SLGHLEIVEVLLKY--GADVNAKDATGITPLYLAAYW----------------GHLEIVE 118
Query: 192 ALLENSTSVSHEGPNGKTAL 211
LL++ V+ + GKTA
Sbjct: 119 VLLKHGADVNAQDKFGKTAF 138
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A ++YG+TPL+MAA
Sbjct: 6 LLEAARAGQDDEVRILMAN--GADANAYDHYGRTPLHMAA----------------AVGH 47
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL N V+ NG T LH AA D G TP
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH---LEIVEVLLKYGADVNAKDATGITP 104
Query: 247 IHYAAYYGNYRTVNLLLE 264
++ AAY+G+ V +LL+
Sbjct: 105 LYLAAYWGHLEIVEVLLK 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L + A + V+ G TPLHLAA GH EIV VL+ K + + +G+ P
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL---KYGADVNAKDATGITP-- 104
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
L+ A G++++V++L + G +A + +GKT ++ + N
Sbjct: 105 -------------LYLAAYWGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDIGNE 147
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D YG TP+H AA G+ V +LL + + T LHLAA G VE ++
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV--DTNGTTPLHLAASLGHLEIVEVLL 88
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH-AAAMRSFAVDTAXXXXXXX 231
D+ + LLE + D V L+ N + G+T LH AAA+ +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEI----VEVLLR 56
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGD 290
D G TP+H AA G+ V +LL + +++ KD +T L+LAA G
Sbjct: 57 NGADVNAVDTNGTTPLHLAASLGHLEIVEVLL---KYGADVNAKDATGITPLYLAAYWGH 113
Query: 291 ARTVERII 298
VE ++
Sbjct: 114 LEIVEVLL 121
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPES----------GVEPFRQMIR 118
++ +G + +HLAA+FGH IV LI + + D+ + V+P R ++
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 119 M---VN----NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYEN 170
VN KNTALH AV GN V+ +L + G A N G++ L +A + +N
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL--EAGANVDAQNIKGESALDLAKQRKN 222
Query: 171 RSDMLRGLLENRTSASFD 188
M+ L E R + +D
Sbjct: 223 VW-MINHLQEARQAKGYD 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 26/216 (12%)
Query: 83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKI 142
+ ++IV+ + + +R E E+G + +R + E T LH A +D+VK
Sbjct: 8 YSTWDIVKA--TQYGIYERCRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 143 LTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH 202
+ + TPL+ A MV+ L++ S
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATR----------------QGHLSMVVQLMKYGADPSL 104
Query: 203 EGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLL 262
G + +H AA T+ DQ G TP+ +AAY + L
Sbjct: 105 IDGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Query: 263 LETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
L T + N+ DK K TALH A G+ + ++
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 38/162 (23%)
Query: 75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ 134
TPLH A + GH +V L++ G +P +++ E + +H A
Sbjct: 78 TPLHWATRQGHLSMVVQLMKY-------------GADP-----SLIDGEGCSCIHLAAQF 119
Query: 135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE-----------NRT 183
G+ +V L + N G TPL AA + D R LL ++
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 184 SASFDMVLA--------LLENSTSVSHEGPNGKTALHAAAMR 217
+A VLA LLE +V + G++AL A R
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 37/143 (25%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
+A G TPLHLAA GH EIV VL++ D +G+ P R
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD---HAGMTPLRL-------------- 86
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
A G++++V++L + G +AN+ G TPL++AA + +
Sbjct: 87 -AALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMF----------------GHLE 127
Query: 189 MVLALLENSTSVSHEGPNGKTAL 211
+V LL+N V+ + GKTA
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAF 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ E +G T LH AA F
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA---FNGHLEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+ AA +G+ V +LL+ + A+ T LHLAA G
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN--ANDMEGHTPLHLAAMFGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
D GWTP+H AA+ G+ V +LL+ + + MT L LAA G VE ++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
N D G LH A + H+ + LL+N
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + V+ G TPL LAA FGH EIV VL++ D
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM---------- 111
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
E +T LH A G++++V++L + G +A + +GKT ++ + N
Sbjct: 112 --------EGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLAR 339
T LHLAA G VE ++ N VD+ G L A + H+ + LL+N
Sbjct: 49 TPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---- 103
Query: 340 SLIDEGDAEGNTPLHVLAAVRPKEFHDVM 368
+ ++ D EG+TPLH+ A E +V+
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 27/120 (22%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
E+L K A VNAK G TPLHLAA+ GH EIV VL+ ++G +
Sbjct: 52 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-- 93
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRS 172
+ + + T LH A +G++++V++L + G +A + +GKTP +A + N
Sbjct: 94 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTPFDLAIDNGNED 148
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
D+ + LLE + D V L+ N V+ + +G T LH AA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGH---LEIVEVLLKA 57
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
D+ G+TP+H AA G+ V +LL+ N DKD T LHLAA +G
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLE 115
Query: 293 TVERIIS 299
VE ++
Sbjct: 116 IVEVLLK 122
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 24/102 (23%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLHLAA+ GH EIV VL+ ++G + + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 69
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAA 166
T LH A +G++++V++L + G +A + G TPL++AA
Sbjct: 70 TPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAA 109
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A + G TPL++AA
Sbjct: 6 LLEAARAGQDDEVRILMAN--GADVNAKDKDGYTPLHLAAR----------------EGH 47
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+ V+ + +G T LH AA D+ G+TP
Sbjct: 48 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH---LEIVEVLLKAGADVNAKDKDGYTP 104
Query: 247 IHYAAYYGNYRTVNLLLET 265
+H AA G+ V +LL+
Sbjct: 105 LHLAAREGHLEIVEVLLKA 123
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ + +G T LH AA R ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAG 70
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
+ D G+TP+H AA G+ V +LL+ N DKD T LHLAA +G
Sbjct: 71 ADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 40/147 (27%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLHLAA+ GH EIV VL+ ++G + + + +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 81
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTS 184
T LH A +G++++V++L + G +A + G TPL++AA
Sbjct: 82 TPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAR----------------E 123
Query: 185 ASFDMVLALLENSTSVSHEGPNGKTAL 211
++V LL+ V+ + GKTA
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAF 150
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 27/118 (22%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
E+L K A VNAK G TPLHLAA+ GH EIV VL+ ++G +
Sbjct: 64 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-- 105
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYEN 170
+ + + T LH A +G++++V++L + G +A + +GKT ++ + N
Sbjct: 106 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTAFDISIDNGN 158
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A + G TPL++AA
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNAKDKDGYTPLHLAAR----------------EGH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+ V+ + +G T LH AA R ++ + D G+TP
Sbjct: 60 LEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDKD--GYTP 116
Query: 247 IHYAAYYGNYRTVNLLLET 265
+H AA G+ V +LL+
Sbjct: 117 LHLAAREGHLEIVEVLLKA 135
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAA+ GH E+V++L+ E+G + + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAA 166
G+++VVK+L + G +A + G+TPL++AA
Sbjct: 44 RNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAA 76
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR 217
G+TPL++AA + ++V LLE V+ + NG+T LH AA R
Sbjct: 2 GRTPLHLAAR----------------NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-R 44
Query: 218 SFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLET 265
+ ++ D+ G TP+H AA G+ V LLLE
Sbjct: 45 NGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 206 NGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLET 265
NG+T LH AA R+ ++ D+ G TP+H AA G+ V LLLE
Sbjct: 1 NGRTPLHLAA-RNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 266 DQSASNIADKDRKMTALHLAAGKGDARTVERII 298
N DK+ + T LHLAA G V+ ++
Sbjct: 58 GADV-NAKDKNGR-TPLHLAARNGHLEVVKLLL 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 27/113 (23%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
E+L K A VNAK G TPLHLAA+ GH EIV VL+ ++G +
Sbjct: 52 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-- 93
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMA 165
+ + + T LH A +G++++V++L + G +A + +GKTP +A
Sbjct: 94 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTPFDLA 141
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
D+ + LLE + D V L+ N V+ + +G T LH AA R ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGA 59
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
+ D G+TP+H AA G+ V +LL+ N DKD T LHLAA +G
Sbjct: 60 DVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLE 115
Query: 293 TVERIIS 299
VE ++
Sbjct: 116 IVEVLLK 122
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 24/102 (23%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLHLAA+ GH EIV VL+ ++G + + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 69
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAA 166
T LH A +G++++V++L + G +A + G TPL++AA
Sbjct: 70 TPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAA 109
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A + G TPL++AA
Sbjct: 6 LLEAARAGQDDEVRILMAN--GADVNAKDKDGYTPLHLAAR----------------EGH 47
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL+ V+ + +G T LH AA R ++ + D G+TP
Sbjct: 48 LEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDKD--GYTP 104
Query: 247 IHYAAYYGNYRTVNLLLET 265
+H AA G+ V +LL+
Sbjct: 105 LHLAAREGHLEIVEVLLKA 123
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 30/206 (14%)
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPL 162
EE + + + + + + TALH A S G+ ++V+ L + G P + ++ G +PL
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---F 219
++AA ++ ++V ALL V+ NG T LH AA ++
Sbjct: 78 HIAA----------------SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 220 AVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM 279
AV D Y T +H AA GN + +++LL ++++NI D +
Sbjct: 122 AV------MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGN- 173
Query: 280 TALHLAAGKGDARTVERIISGNPKCY 305
T LHLA + + ++S Y
Sbjct: 174 TPLHLACDEERVEEAKLLVSQGASIY 199
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFEIVRVLIERA----KLAQRGDEEPESG 109
EI+E L + VN K D +PLH+AA G EIV+ L+ + + Q G
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 113
Query: 110 VEPFRQMIRMV-----------NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN--- 155
R I ++ ++ + TA+H A ++GN+ ++ IL Y S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQD 169
Query: 156 NYGKTPLYMAAEYE 169
G TPL++A + E
Sbjct: 170 TEGNTPLHLACDEE 183
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+ D GW+P+H AA G V LL + A A T LH AA K +
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 298 ISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
+ G NP + D+ +H A ++ + LL ++ + D EGNTPLH+
Sbjct: 126 LEGGANP---DAKDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHL 178
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
EN + V++++E A + ++ G TPLH AA+ GH E+V++LI + D +
Sbjct: 13 ENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-- 69
Query: 108 SGVEPF--------RQMIRMV----------NNEKNTALHEAVSQGNVDVVKILTREDPG 149
G P +++++++ +++ T LH A G+ +VVK+L +
Sbjct: 70 -GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 150 YPYSANNYGKTPLYMAAEYEN 170
S ++ G+TPL +A E+ N
Sbjct: 129 VNTS-DSDGRTPLDLAREHGN 148
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
S++ + L+E + + D V L+EN V+ +G+T LH AA
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGH---KEVVKLLIS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H+AA G+ V LL+ + + N D D + T LH AA G
Sbjct: 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGR-TPLHHAAENGHK 116
Query: 292 RTVERIIS 299
V+ +IS
Sbjct: 117 EVVKLLIS 124
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTS 184
T LH A G+ +VVK+L + G +A + G+TPL+ AAE ++
Sbjct: 39 TPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHK------------- 83
Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGW 244
++V L+ V+ + +G+T LH AA +D G
Sbjct: 84 ---EVVKLLISKGADVNAKDSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGR 137
Query: 245 TPIHYAAYYGNYRTVNLL 262
TP+ A +GN V LL
Sbjct: 138 TPLDLAREHGNEEVVKLL 155
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNAK G TPLH AA+ GH E+V++LI + + +++
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKG------------------ADVNTSDSDGR 137
Query: 126 TALHEAVSQGNVDVVKILTRE 146
T L A GN +VVK+L ++
Sbjct: 138 TPLDLAREHGNEEVVKLLEKQ 158
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD 309
AA GN V L+E N +D D + T LH AA G V+ +IS D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGR-TPLHHAAENGHKEVVKLLISKGADVN-AKD 67
Query: 310 NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
+ G LH+A + H ++ L+ + ++ D++G TPLH A KE
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKG----ADVNAKDSDGRTPLHHAAENGHKEV 118
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 52 TKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA---KLAQRGDEEP-- 106
TK V+EIL+ + +V+ +G+TPL++A EI + LI+R L + P
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL 77
Query: 107 ----ESGVEPFRQMIRMVNNEKN-------TALHEAVSQGNVDVVKIL---TREDPGYPY 152
+ E M++ + N AL A +G++D VK+L RED +
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ- 136
Query: 153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH 212
N++G T L A GL E D+V L+EN S + +G+TA+
Sbjct: 137 --NDFGYTALIEAV----------GLREGNQLYQ-DIVKLLMENGADQSIKDNSGRTAMD 183
Query: 213 AAAMRSF 219
A + +
Sbjct: 184 YANQKGY 190
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 30/206 (14%)
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPL 162
EE + + + + + + TALH A S G+ ++V+ L + G P + ++ G +PL
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---F 219
++AA ++ ++V ALL V+ NG T LH AA ++
Sbjct: 79 HIAA----------------SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 220 AVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM 279
AV D Y T +H AA GN + +++LL ++++NI D +
Sbjct: 123 AV------MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGN- 174
Query: 280 TALHLAAGKGDARTVERIISGNPKCY 305
T LHLA + + ++S Y
Sbjct: 175 TPLHLACDEERVEEAKLLVSQGASIY 200
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFEIVRVLIERA----KLAQRGDEEPESG 109
EI+E L + VN K D +PLH+AA G EIV+ L+ + + Q G
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 114
Query: 110 VEPFRQMIRMV-----------NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN--- 155
R I ++ ++ + TA+H A ++GN+ ++ IL Y S N
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQD 170
Query: 156 NYGKTPLYMAAEYE 169
G TPL++A + E
Sbjct: 171 TEGNTPLHLACDEE 184
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+ D GW+P+H AA G V LL + A A T LH AA K +
Sbjct: 69 DKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Query: 298 ISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
+ G NP + D+ +H A ++ + LL ++ + D EGNTPLH+
Sbjct: 127 LEGGANP---DAKDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHL 179
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA++G+ V +LL+ + A D +T LHLAA +G
Sbjct: 69 NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN--AKDDNGITPLHLAANRGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + + G TPLHLAA FGH EIV VL++ D ++G+ P
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD---DNGITP-- 116
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPL 162
LH A ++G++++V++L + Y N +GKT
Sbjct: 117 -------------LHLAANRGHLEIVEVLLK----YGADVNAQDKFGKTAF 150
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 35/139 (25%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAA +GH EIV VL++ + V + + +T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG-----------ADVNAYDTL-------GSTPLHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
G++++V++L + +N G TPL++AA RG LE +V
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAAN--------RGHLE--------IVEV 131
Query: 193 LLENSTSVSHEGPNGKTAL 211
LL+ V+ + GKTA
Sbjct: 132 LLKYGADVNAQDKFGKTAF 150
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D GWTP+H AAY+G+ V +LL+ + A T LHLAA G VE ++
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
N D+ G LH A H+ + LL+
Sbjct: 101 K-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
T LH A G++++V++L + G +A + G TPL++AA +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKN--GADVNAYDTLGSTPLHLAAHF---------------- 90
Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS 218
++V LL+N V+ + NG T LH AA R
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + ++ G TPLHLAA GH EIV VL++
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA----------------- 104
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
+ V+ +T LH A G++++V++L + G +A + +GKT ++ + N
Sbjct: 105 -DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVER 296
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA G VE
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEIVEV 98
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN 335
++ VD G LH A + H+ + LL++
Sbjct: 99 LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ +G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V +LL+ A A T LHLAA G
Sbjct: 69 HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 279 MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA 338
+T LHLAA G VE ++ +D G LH A + H+ + LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNA-IDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 339 RSLIDEGDAEGNTPLHVLAAVRPKEFHDVM 368
++ D G+TPLH+ A + E +V+
Sbjct: 107 NAV----DTWGDTPLHLAAIMGHLEIVEVL 132
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRS 172
+ + + + TALH A S G+ ++V+ L + G P + ++ G +PL++AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAA------ 81
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---FAVDTAXXXXX 229
++ ++V ALL V+ NG T LH AA ++ AV
Sbjct: 82 ----------SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV------ML 125
Query: 230 XXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA 286
D Y T +H AA GN + V++LL ++++NI D + T LHLA
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN-TPLHLAC 180
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
VN G TPLH AA EI +L+E G P++ ++ TA+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLE-------GGANPDAK-----------DHYDATAM 143
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYE 169
H A ++GN+ +V IL Y S N G TPL++A + E
Sbjct: 144 HRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACDEE 183
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+ D GW+P+H AA G V LL + A A T LH AA K +
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 298 ISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
+ G NP + D+ +H A ++ + LL ++ + D EGNTPLH+
Sbjct: 126 LEGGANP---DAKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHL 178
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 37/140 (26%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHL GH EI+ VL++ A D +SG P LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD---KSGWTP---------------LHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
+G++++V++L + G +A +Y G TPL++AAE ++V
Sbjct: 89 YRGHLEIVEVLLK--YGADVNAMDYQGYTPLHLAAE----------------DGHLEIVE 130
Query: 192 ALLENSTSVSHEGPNGKTAL 211
LL+ V+ + GKTA
Sbjct: 131 VLLKYGADVNAQDKFGKTAF 150
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA----------MRSFAV 221
SD+ + LLE + D V L+ N V+ G T LH + +A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 222 DTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKM 279
D +D+ GWTP+H AAY G+ V +LL+ D +A + +
Sbjct: 72 DV-------------NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGY 114
Query: 280 TALHLAAGKGDARTVERII 298
T LHLAA G VE ++
Sbjct: 115 TPLHLAAEDGHLEIVEVLL 133
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM 116
E+L K A + + G TPLHLAA GH EIV VL++ +
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK------------------YGAD 105
Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTR 145
+ ++ + T LH A G++++V++L +
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
+ E+L K A + ++ +G TPLHLAA+ GH EIV VL++
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +AN++ G TPL++ +
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNANDWFGITPLHLVV----------------NNGH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
+++ LL+ + V+ +G T LH AA R D G+TP
Sbjct: 60 LEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH---LEIVEVLLKYGADVNAMDYQGYTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAAEDGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + ++ G TPLHLAA GH EIV VL++ G +
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH-------------GAD--- 105
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
+ V+ +T LH A G++++V++L + G +A + +GKT ++ + N
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVER 296
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA G VE
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEIVEV 98
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN 335
++ VD G LH A + H+ + LL++
Sbjct: 99 LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ +G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G TP+H AA G+ V +LL+ A A T LHLAA G
Sbjct: 69 HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 279 MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA 338
+T LHLAA G VE ++ +D G LH A + H+ + LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNA-IDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 339 RSLIDEGDAEGNTPLHVLAAVRPKEFHDVM 368
++ D G+TPLH+ A + E +V+
Sbjct: 107 NAV----DTWGDTPLHLAAIMGHLEIVEVL 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRS 172
+ + + + TALH A S G+ ++V+ L + G P + ++ G +PL++AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAA------ 81
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---FAVDTAXXXXX 229
++ ++V ALL V+ NG T LH AA ++ AV
Sbjct: 82 ----------SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV------ML 125
Query: 230 XXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA 286
D Y T +H AA GN + V++LL ++++NI D + T LHLA
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN-TPLHLAC 180
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFEIVRVLIERA----KLAQRGDEEPESG 109
EI+E L + VN K D +PLH+AA G EIV+ L+ + + Q G
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 110 VEPFRQMIRMVNNEKN-----------TALHEAVSQGNVDVVKILTREDPGYPYSAN--- 155
R I ++ E TA+H A ++GN+ +V IL Y S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQD 169
Query: 156 NYGKTPLYMAAEYE 169
G TPL++A + E
Sbjct: 170 TEGNTPLHLACDEE 183
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+ D GW+P+H AA G V LL + A A T LH AA K +
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 298 ISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
+ G NP + D+ +H A ++ + LL ++ + D EGNTPLH+
Sbjct: 126 LEGGANP---DAKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHL 178
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 25/102 (24%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
V+ G TPLHLAA GH EIV VL+ + G + + V F T L
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLL------KHGADVDAADVYGF------------TPL 84
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNY---GKTPLYMAAE 167
H A G++++V++L + Y N + G TPL++AA+
Sbjct: 85 HLAAMTGHLEIVEVLLK----YGADVNAFDMTGSTPLHLAAD 122
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKG 289
D YG+TP+H AA G+ V +LL+ D +A ++ T LHLAA +G
Sbjct: 69 HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEG 124
Query: 290 DARTVERII 298
VE ++
Sbjct: 125 HLEIVEVLL 133
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER 95
T LH+ +S E V E+L K A + + G TPLHLAA GH EIV VL++
Sbjct: 49 TPLHLAAVSGHLEIV------EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK- 101
Query: 96 AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN 155
+ + + +T LH A +G++++V++L + G +A
Sbjct: 102 -----------------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY--GADVNAQ 142
Query: 156 N-YGKTPLYMAAEYENR 171
+ +GKT ++ + N
Sbjct: 143 DKFGKTAFDISIDNGNE 159
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N VDN G LH A VS H+ + LL++ + +D D G TPLH+
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG----ADVDAADVYGFTPLHL 86
Query: 356 LAAVRPKEFHDVM 368
A E +V+
Sbjct: 87 AAMTGHLEIVEVL 99
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +A +N G TPL++AA S
Sbjct: 18 LLEAARAGQDDEVRILIAN--GADVNAVDNTGLTPLHLAA----------------VSGH 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTP 246
++V LL++ V G T LH AAM D G TP
Sbjct: 60 LEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH---LEIVEVLLKYGADVNAFDMTGSTP 116
Query: 247 IHYAAYYGNYRTVNLLLE 264
+H AA G+ V +LL+
Sbjct: 117 LHLAADEGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLR 176
+ V+N T LH A G++++V++L + +A+ YG TPL++AA +
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAA--------MT 90
Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
G LE +V LL+ V+ G T LH AA
Sbjct: 91 GHLE--------IVEVLLKYGADVNAFDMTGSTPLHLAA 121
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 85/239 (35%), Gaps = 65/239 (27%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
N G T LH A + ++V+ L+E I +NE LH
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGA------------------NINQPDNEGWIPLH 111
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYM----------------------AAE 167
A S G +D+ + L + + + N+ G TPL + AA
Sbjct: 112 AAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 168 YENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXX 227
E MLR + S + V H +G TALH AA + + T
Sbjct: 171 KEEERIMLRDARQWLNSGHIN----------DVRH-AKSGGTALHVAAAKGY---TEVLK 216
Query: 228 XXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE----------TDQSASNIADKD 276
D GWTP+H AA++G +L+E Q+A ++AD+D
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
D+ + LLE + D V L+ N V+ NG T LH AA
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG---QLEIVEVLLKN 61
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDA 291
+D G TP+H AAY G+ V +LL + +++ DR T LHLAA G
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAALSGQL 118
Query: 292 RTVERII 298
VE ++
Sbjct: 119 EIVEVLL 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L EA + G D V+IL + +N G TPL++AA +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAA----------------ANGQL 52
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
++V LL+N V+ G T LH AA D+ GWTP+
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGH---LEIVEVLLKHGADVNAYDRAGWTPL 109
Query: 248 HYAAYYGNYRTVNLLLE 264
H AA G V +LL+
Sbjct: 110 HLAALSGQLEIVEVLLK 126
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA+AG + + + + + T T LH+ + + E V E+L K A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIV------EVLLKNGA 63
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA 96
+ ++ G TPLHLAA GH EIV VL++
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2 DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
D +AA AG+ E K + RD+ R ++T LH ++ VS
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 57
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
VE +L+ V+AK G PLH A +GH+E+ +L++
Sbjct: 58 VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 98
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
++ + + K T LHEA ++G ++ K+L + P N G TPL + + + +
Sbjct: 99 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 154
Query: 171 RSDMLRG 177
D+LRG
Sbjct: 155 IQDLLRG 161
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
M N+E + L EA G+V+ VK L TPL+ AA Y
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---------- 52
Query: 179 LENRTSASFDMVLALLENSTSVSHEGPNGKTALH-AAAMRSFAVDTAXXXXXXXXXXXXX 237
NR S +V LL++ V + G LH A + + V
Sbjct: 53 --NRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV----AELLVKHGAVVN 102
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D + +TP+H AA G Y LLL+
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQ 129
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2 DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
D +AA AG+ E K + RD+ R ++T LH ++ VS
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 61
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
VE +L+ V+AK G PLH A +GH+E+ +L++
Sbjct: 62 VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 102
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
++ + + K T LHEA ++G ++ K+L + P N G TPL + + + +
Sbjct: 103 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 158
Query: 171 RSDMLRG 177
D+LRG
Sbjct: 159 IQDLLRG 165
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLR 176
I + N+E + L EA G+V+ VK L TPL+ AA Y
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-------- 56
Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH-AAAMRSFAVDTAXXXXXXXXXXX 235
NR S +V LL++ V + G LH A + + V
Sbjct: 57 ----NRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV----AELLVKHGAV 104
Query: 236 XXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D + +TP+H AA G Y LLL+
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2 DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
D +AA AG+ E K + RD+ R ++T LH ++ VS
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 59
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
VE +L+ V+AK G PLH A +GH+E+ +L++
Sbjct: 60 VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 100
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
++ + + K T LHEA ++G ++ K+L + P N G TPL + + + +
Sbjct: 101 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 156
Query: 171 RSDMLRG 177
D+LRG
Sbjct: 157 IQDLLRG 163
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
D+ G P+H A YG+Y LL++ + N+AD K T LH AA KG
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADL-WKFTPLHEAAAKG 121
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
N+E + L EA G+V+ VK L TPL+ AA Y
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY------------ 54
Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALH-AAAMRSFAVDTAXXXXXXXXXXXXXET 239
NR S +V LL++ V + G LH A + + V
Sbjct: 55 NRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV----AELLVKHGAVVNVA 106
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLE 264
D + +TP+H AA G Y LLL+
Sbjct: 107 DLWKFTPLHEAAAKGKYEICKLLLQ 131
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 21/92 (22%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF--------RQMIRMV- 120
NA PLHLA + GHF++V+ L++ + D SG P +++ ++
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD---LSGNTPLIYACSGGHHELVALLL 172
Query: 121 ---------NNEKNTALHEAVSQGNVDVVKIL 143
NN+ NTALHEAV + +V VV++L
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 38/161 (23%)
Query: 59 LEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQ 115
L K PA L VN G +PLH+AA G +++ +L++ A G
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG--ANAGAR----------- 115
Query: 116 MIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDML 175
N ++ LH A QG+ VVK L + P + G TPL A
Sbjct: 116 -----NADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYAC--------- 160
Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAM 216
+ ++V LL++ S++ G TALH A +
Sbjct: 161 -------SGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
T Q G +P+H AA +G + LLL+ +A A + LHLA +G + V+ ++
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH 354
N K + D G L YA H + LL++ + I+ + +GNT LH
Sbjct: 140 DSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALH 190
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
TD G +P+H AA YG++ T +LL S DR T LH+AA +G A VE ++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 21/100 (21%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G +PLHLAA++GHF VL+ RA +++ + + T LH A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVD-----------------RTPLHMAA 75
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGK-TPLYMAAEYENR 171
S+G+ ++V++L + G +A + K T L+ A E+ ++
Sbjct: 76 SEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQ 113
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
D+ + LLE + D V L+ N + + G + LH AA T
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDA 291
+ D+ TP+H AA G+ V +LL + +++ KD KMTALH A
Sbjct: 60 RDARTKVDR---TPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 292 RTVERII 298
VE +I
Sbjct: 114 EVVELLI 120
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEY 168
L EA G D V+IL G P++ + G +PL++AA+Y
Sbjct: 6 LLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQY 44
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ E+L K A + + G TPLHLAA GH EIV VL++
Sbjct: 62 IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA----------------- 104
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
+ +N+ +T LH A G++++V++L + G +A + +GKT ++ + N
Sbjct: 105 -DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVER 296
TD G+TP+H AA G+ V +LL+ D +AS++ +T LHLAA G VE
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT----GITPLHLAAATGHLEIVEV 98
Query: 297 II--SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
++ + Y DN G LH A H+ + LL++
Sbjct: 99 LLKHGADVNAY---DNDGHTPLHLAAKYGHLEIVEVLLKH 135
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ +G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
+D G TP+H AA G+ V +LL+ N D D T LHLAA G
Sbjct: 69 NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGH-TPLHLAAKYGHL 126
Query: 292 RTVERII 298
VE ++
Sbjct: 127 EIVEVLL 133
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N DN G LH A + H+ + LL+N + ++ D G TPLH+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG----ADVNASDLTGITPLHL 86
Query: 356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHV-FNYGYTEL 397
AA E +V+ + A+ +A + + H+ YG+ E+
Sbjct: 87 AAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEI 128
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGD 103
+SE E + + + + + +L Q + G+T LHLAA++ + + L+E + A
Sbjct: 28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--- 84
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLY 163
+ +N T LH AVS V +IL R + + G TPL
Sbjct: 85 ---------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT 223
+AA + G+LE+ L+ + V+ GK+ALH AA +
Sbjct: 130 LAARL-----AVEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 224 AXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
++ TP+ AA G+Y T +LL+
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 211
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V +I
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQI 108
Query: 298 ISGN 301
+ N
Sbjct: 109 LIRN 112
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGD 103
+SE E + + + + + +L Q + G+T LHLAA++ + + L+E + A
Sbjct: 29 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--- 85
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLY 163
+ +N T LH AVS V +IL R + + G TPL
Sbjct: 86 ---------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 130
Query: 164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT 223
+AA + G+LE+ L+ + V+ GK+ALH AA +
Sbjct: 131 LAARL-----AVEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 224 AXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
++ TP+ AA G+Y T +LL+
Sbjct: 175 VVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 212
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V +I
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQI 109
Query: 298 ISGN 301
+ N
Sbjct: 110 LIRN 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 32/136 (23%)
Query: 28 LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPLHLAAKFG 84
+ +K NT LH + +N + V+++L K VNA+ G+TPLHLAAK G
Sbjct: 3 MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNG 53
Query: 85 HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT 144
H EIV++L LA+ D + + + NT H A G+ ++VK+L
Sbjct: 54 HAEIVKLL-----LAKGAD-------------VNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Query: 145 REDPGYPYSANNYGKT 160
+ G +A ++G +
Sbjct: 96 AK--GADVNARSWGSS 109
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 96/252 (38%), Gaps = 43/252 (17%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
LLLQ V+AK G PLH A +GH+E+ +L++ +
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA------------------CV 117
Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM--- 174
++ + T LHEA S+ V+V +L P N +GK+ + MA E R +
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYE 176
Query: 175 LRG--LLENRTSASF-----DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXX 227
+G LL+ A + L ++ SHE TALH A
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE-----TALHCAVASLHPKRKQVAE 231
Query: 228 XXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAG 287
E ++ TP+H AA + + +L A A TALH AA
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL--HKHGAKMNALDSLGQTALHRAAL 289
Query: 288 KGDARTVERIIS 299
G +T ++S
Sbjct: 290 AGHLQTCRLLLS 301
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLI 93
V E+L K A + +++ G T LH AA GH + R+L+
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
++ G TPLHLAA+ GH EIV VL+ K + E G+ P L
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLL---KYGADVNAEDNFGITP---------------L 84
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRS 172
H A +G++++V++L + G +A + +GKT ++ + N
Sbjct: 85 HLAAIRGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNED 127
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G TP+H AA G+ V +LL+ + A+ + +T LHLAA +G VE ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVN--AEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ +G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D +G TP+H AA G+ V +LL+
Sbjct: 69 YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERA 96
EI+E VNA+ G TPLHLAA GH EIV VL++
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + K T LH+ ++ E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIV------EVLLKNGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA 96
+ ++A G+TPLHL A +GH EIV VL++
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ E G T LH AAM
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D G TP+H A YG+ V +LL+
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N D G LH A ++ H+ + LL+N ++ DA G TPLH+
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI----DAIGETPLHL 86
Query: 356 LAAVRPKEFHDVM 368
+A E +V+
Sbjct: 87 VAMYGHLEIVEVL 99
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 41/157 (26%)
Query: 68 QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
Q A G+T LH+AA + + E VL+E A PE EP + E TA
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAA---------PELVFEPMTSELY----EGQTA 78
Query: 128 LHEAVSQGNVDVVKILTREDPGY------------PYSANNYGKTPLYMAAEYENRSDML 175
LH AV NV++V+ L P++ YG+ PL AA
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA--------- 129
Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH 212
S ++V L+E+ + + G T LH
Sbjct: 130 -------CVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ + + + +L Q + G+T LHLAA++ + + L+E + A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAX-------------- 49
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
+ +N T LH AVS V +IL R + + G TPL +AA
Sbjct: 50 ----IQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA----- 100
Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXX 234
L G+LE+ L+ + V+ GK+ALH AA +
Sbjct: 101 LEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 149
Query: 235 XXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
++ TP+ AA G+Y T +LL+
Sbjct: 150 MQNNKEE---TPLFLAAREGSYETAKVLLD 176
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 37/217 (17%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
E+ + + + ++L + L ++ G+T LHLAA+F + + L+ +
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL-------------D 72
Query: 108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
+G + Q +N T LH AV+ + V +IL R + + G TPL +AA
Sbjct: 73 AGADANSQ-----DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR 127
Query: 168 YENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXX 227
+ G++E+ +A D+ A +NS GKTALH AA + +T
Sbjct: 128 LA-----IEGMVEDLITADADINAA--DNS---------GKTALHWAAAVN---NTEAVN 168
Query: 228 XXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D TP+ AA G+Y LL+
Sbjct: 169 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGD 103
+SE E + + + + + +L Q + G T LHLAA + + + L+E + A
Sbjct: 28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN--- 84
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLY 163
+ +N T LH AVS V +IL R + + G TPL
Sbjct: 85 ---------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT 223
+AA + G+LE+ L+ + V+ GK+ALH AA +
Sbjct: 130 LAARL-----AVEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 224 AXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
++ TP+ AA G+Y T +LL+
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 211
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V +I
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQI 108
Query: 298 ISGN 301
+ N
Sbjct: 109 LIRN 112
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
+ E+L K A + ++ G TPLHLAA GH EIV VL+E
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA R
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
+D +G TP+H AA G+ V +LLE
Sbjct: 69 HGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 24/106 (22%)
Query: 69 VNAKGD---TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNA D TPLHLAAK GH EIV VL++ D +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD------------------SWGR 81
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYEN 170
T LH A + G++++V++L + G +A + +GKT ++ + N
Sbjct: 82 TPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGN 125
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N +D+ G LH A H+ + LL++ + ++ D+ G TPLH+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDSWGRTPLHL 86
Query: 356 LAAVRPKEFHDVM 368
A V E +V+
Sbjct: 87 AATVGHLEIVEVL 99
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + + NT LH+ +++ +++ + E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL---AADYDHLE---IVEVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA 96
+ + G TPLHLAA FGH EIV VL++
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
L EA G D V+IL G +AN+ G TPL++AA+Y++
Sbjct: 18 LLEAARAGQDDEVRILMAN--GADVNANDRKGNTPLHLAADYDH---------------- 59
Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAM 216
++V LL++ V+ +G T LH AA+
Sbjct: 60 LEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D G TP+H AA +G+ V +LL+
Sbjct: 69 HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 18/71 (25%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLH A GH ++V +L++ + ++ + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH------------------KALVNTTGYQNDSPLHDAA 84
Query: 133 SQGNVDVVKIL 143
G+VD+VK+L
Sbjct: 85 KNGHVDIVKLL 95
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 207 GKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
G+T LH A+++ D D GWTP+H A +G+ + V LLL+
Sbjct: 10 GETLLHIASIKG---DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 267 QSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
+ ++ + LH AA G V+ ++S
Sbjct: 67 ALVNTTGYQND--SPLHDAAKNGHVDIVKLLLS 97
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLI 93
V E+L + AL+ + D+PLH AAK GH +IV++L+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
R T LH+A+ KGD +VE ++ N + D+ G LH A H+ + LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-- 65
Query: 337 LARSLIDEGDAEGNTPLH 354
++L++ + ++PLH
Sbjct: 66 --KALVNTTGYQNDSPLH 81
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNN--------EK 124
G P+HLA ++V L+E AK +RG + PES + + R VN +
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAK--ERG-QXPESLLNECDE--REVNEIGSHVKHCKG 138
Query: 125 NTALHEAVSQGN--VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRS--DMLRGLLE 180
TALH V G ++ +KIL + P + + +TPL A E+ NR D+ +
Sbjct: 139 QTALHWCVGLGPEYLEXIKILVQLG-ASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 181 NRTSASFD 188
+++S D
Sbjct: 198 SKSSLRLD 205
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG V+ ++
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 89
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN 335
E N G L YA+ HV ++ LLE+
Sbjct: 90 DCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLESG 125
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G TPL AA G +V L++ +G +P +++ + +AL A
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQ-------------NGADP-----QLLGKGRESALSLA 76
Query: 132 VSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
S+G D+VK+L D G + ++ G TPL A + N ++ LLE+ + +
Sbjct: 77 CSKGYTDIVKMLL--DCGVDVNEYDWNGGTPLLYAV-HGNHVKCVKMLLESGADPTIE 131
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
E D G TP+ YA + + + V +LLE+ A + D ++ LA G R+V+++
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALG-YRSVQQV 153
Query: 298 I 298
I
Sbjct: 154 I 154
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
+ + + + +L Q + G+T LHLAA++ + + L+E + A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------- 52
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
+ +N T LH AVS V +IL R + + G TPL +AA
Sbjct: 53 ----IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA----- 103
Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXX 234
+ G+LE+ L+ + V+ GK+ALH AA +
Sbjct: 104 VEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152
Query: 235 XXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
++ TP+ AA G+Y T +LL+
Sbjct: 153 MQNNREE---TPLFLAAREGSYETAKVLLD 179
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
+TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V +I
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQI 76
Query: 298 ISGN 301
+ N
Sbjct: 77 LIRN 80
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG V+ ++
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 87
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
E N G L YA+ HV ++ LLE+
Sbjct: 88 DCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 122
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G TPL AA G +V L++ +G +P +++ + +AL A
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQ-------------NGADP-----QLLGKGRESALSLA 74
Query: 132 VSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
S+G D+VK+L D G + ++ G TPL A + N ++ LLE+ + +
Sbjct: 75 CSKGYTDIVKMLL--DCGVDVNEYDWNGGTPLLYAV-HGNHVKCVKMLLESGADPTIE 129
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
E D G TP+ YA + + + V +LLE+ A + D ++ LA G R+V+++
Sbjct: 95 EYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALG-YRSVQQV 151
Query: 298 I 298
I
Sbjct: 152 I 152
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG V+ ++
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 105
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
E N G L YA+ HV ++ LLE+
Sbjct: 106 DCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 140
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 22/111 (19%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G TPL AA G +V L++ +G +P +++ + +AL A
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQ-------------NGADP-----QLLGKGRESALSLA 92
Query: 132 VSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLEN 181
S+G D+VK+L D G + ++ G TPL + A + N ++ LLE+
Sbjct: 93 CSKGYTDIVKMLL--DCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKMLLES 140
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
E D G TP+ YA + + + V +LLE+ A + D ++ LA G R+V+++
Sbjct: 113 EYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALG-YRSVQQV 169
Query: 298 I 298
I
Sbjct: 170 I 170
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIE 94
+ E+L K A VNA+ G TPLHLAA GH EIV VL+E
Sbjct: 62 IVEVLLKHGA---DVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA R
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
D +G TP+H AA G+ V +LLE
Sbjct: 69 HGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIE 94
G TPLHLAAK GH EIV VL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK 68
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 21/99 (21%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G TPLHLAA GH EIV VL+ ++G + + N T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-------------KNGAD-----VNATGNTGRTPLHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYEN 170
++++V++L + G +A + +GKT ++ + N
Sbjct: 89 WADHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGN 125
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 55 VEEILEKCPALLLQVNAKGDT---PLHLAAKFGHFEIVRVLIERA 96
+ E+L K A VNA G+T PLHLAA H EIV VL++
Sbjct: 62 IVEVLLKNGA---DVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L N V+ G T LH AAM
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
T G TP+H AA+ + V +LL+
Sbjct: 69 NGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ G T LH AA R
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
+D +G TP+H AA G+ V +LLE
Sbjct: 69 HGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
+ E+L K A + + G TPLHLAA GH EIV VL+E
Sbjct: 62 IVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 69 VNAKGD---TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
VNA D TPLHLAAK GH EIV VL++ D
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR------------------ 81
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYEN 170
T LH A + G++++V++L + G +A + +GKT ++ + N
Sbjct: 82 TPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGN 125
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
RI+ N +D+ G LH A H+ + LL++ + ++ D G TPLH+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDIWGRTPLHL 86
Query: 356 LAAVRPKEFHDVM 368
A V E +V+
Sbjct: 87 AATVGHLEIVEVL 99
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA 96
+ E+L K A + V+A G TPLHLAA GH EI VL++
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
SD+ + LLE + D V L+ N V+ + G T L+ A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
D G+TP+H AA+ G+ +LL+ N DK K TA ++ G G+
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGK-TAFDISIGNGNE 126
Query: 292 RTVE 295
E
Sbjct: 127 DLAE 130
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIE 94
VNAK G TPL+LA GH EIV VL++
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLK 68
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+YG TP++ A +G+ V +LL+ + + T LHLAA G E ++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
+N DTPLHLAA GH +IV+ L++ ++ I VN N L
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQ------------------YKADINAVNEHGNVPL 104
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL 162
H A G V + L + N YG+ P+
Sbjct: 105 HYACFWGQDQVAEDLV-ANGALVSICNKYGEMPV 137
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIE 94
G TPLHLAA+ GH E+V++L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLET 265
D+ G TP+H AA G+ V LLLE
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
SD+ + LLE + D V L+ N V+ + NG T LH AA
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 47
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
+N DTPLHLAA GH +IV+ L++ ++ I VN N L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQ------------------YKADINAVNEHGNVPL 109
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL 162
H A G V + L + N YG+ P+
Sbjct: 110 HYACFWGQDQVAEDLV-ANGALVSICNKYGEMPV 142
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIE 94
G TPLHLAA+ GH E+V++L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
SD+ + LLE + D V L+ N V+ + NG T LH AA
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 65
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIE 94
VNAK G TPLHLAA+ GH EIV VL++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLET 265
D+ G+TP+H AA G+ V +LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKA 57
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
++E L K L+ + + +G TPL A+ FG E VR L+E G +P
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-------------GADP-- 62
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY---GKTPLYMA 165
++ E+ +AL A + G D+V +L D N Y G TPL A
Sbjct: 63 ---HILAKERESALSLASTGGYTDIVGLLLERD----VDINIYDWNGGTPLLYA 109
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
D+ G+TP+ +A+ +G TV LLE + +I K+R+ +AL LA+ G V ++
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSLASTGGYTDIVGLLLE 90
Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
+ + D G L YA+ HV + LL L E D+ G TP+ + A+
Sbjct: 91 RDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADS-GYTPMDLAVAL 145
Query: 360 RPKEFHDVM 368
++ V+
Sbjct: 146 GYRKVQQVI 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
++E L K L+ + + +G TPL A+ FG E VR L+E G +P
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-------------GADP-- 62
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY---GKTPLYMA 165
++ E+ +AL A + G D+V +L D N Y G TPL A
Sbjct: 63 ---HILAKERESALSLASTGGYTDIVGLLLERD----VDINIYDWNGGTPLLYA 109
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
D+ G+TP+ +A+ +G TV LLE + +I K+R+ +AL LA+ G V ++
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSLASTGGYTDIVGLLLE 90
Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
+ + D G L YA+ HV + LL L E D+ G TP+ + A+
Sbjct: 91 RDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLAR---GADLTTEADS-GYTPMDLAVAL 145
Query: 360 RPKEFHDVM 368
++ V+
Sbjct: 146 GYRKVQQVI 154
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G+TPLHLA + G V VL + +++ N +T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPH------------LHSILKATNYNGHTCLHLA 121
Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
G + +V++L G+T L++A + +N D++ LL+
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN-PDLVSLLLK 169
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 64 ALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE 123
++L N G T LHLA+ G+ IV +L+ A +EP +G
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLG--ADVNAQEPCNG-------------- 148
Query: 124 KNTALHEAVSQGNVDVVKILTR 145
TALH AV N D+V +L +
Sbjct: 149 -RTALHLAVDLQNPDLVSLLLK 169
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R VE ++
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 77 LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGN 136
+H AA+ G + ++ L+E F+ + + +NE N LH A +G+
Sbjct: 74 IHDAARAGQLDTLQTLLE------------------FQADVNIEDNEGNLPLHLAAKEGH 115
Query: 137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEY 168
+ VV+ L + N+ G T +A Y
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L A ++G+V V+ L + +P + N +GKT L + M+ G S
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---------MMFG--------ST 54
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
+ L LL+ S + + +G + +H AA F +DT D G PI
Sbjct: 55 AIALELLKQGASPNVQDTSGTSPVHDAARTGF-LDTLKVLVEHGADVNV--PDGTGALPI 111
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKD-RKMTALHLAAGKGDARTVERIISGN 301
H A G+ V+ L + S++ +D R +T L LA +G A+ + I+ G+
Sbjct: 112 HLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRG-AQDLVDILQGH 161
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 51 STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGV 110
ST E+L++ + +Q + G +P+H AA+ G + ++VL+E D +G
Sbjct: 53 STAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD---GTGA 108
Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE--Y 168
P +H AV +G+ VV L E + A G TPL +A +
Sbjct: 109 LP---------------IHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGA 151
Query: 169 ENRSDMLRG 177
++ D+L+G
Sbjct: 152 QDLVDILQG 160
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
+G+TPLHLA + G V VL + +++ N +T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPH------------LHSILKATNYNGHTCLHLA 124
Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
G + +V++L G+T L++A + +N D++ LL+
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN-PDLVSLLLK 172
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 64 ALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE 123
++L N G T LHLA+ G+ IV +L+ A +EP +G
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLG--ADVNAQEPCNG-------------- 151
Query: 124 KNTALHEAVSQGNVDVVKILTR 145
TALH AV N D+V +L +
Sbjct: 152 -RTALHLAVDLQNPDLVSLLLK 172
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXX 237
LL++ FD+V ++ S G TALH A A T
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC---AGHTEIVKFLVQFGVNVN 97
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA 281
D GWTP+H AA N + L+E+ + + D + A
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
+ N+E TALH AV G+ ++VK L + +A++ G TPL+ AA N + + L
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASC-NNVQVCKFL 122
Query: 179 LENRTSASFDMVLALLENSTSVSHEGPNGKT 209
+E+ +A F M + ++ + E G T
Sbjct: 123 VES-GAAVFAMTYSDMQTAADKCEEMEEGYT 152
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
N +G T LH A GH EIV+ L++ F + +++ T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ------------------FGVNVNAADSDGWTPLH 108
Query: 130 EAVSQGNVDVVKILT 144
A S NV V K L
Sbjct: 109 CAASCNNVQVCKFLV 123
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G+ IH AA G T+ LLE +Q+ NI D + + LHLAA +G R VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXX 237
LL++ FD+V ++ S G TALH A A T
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC---AGHTEIVKFLVQFGVNVN 97
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA 281
D GWTP+H AA N + L+E+ + + D + A
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
N+E TALH AV G+ ++VK L + +A++ G TPL+ AA N + + L+E
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASC-NNVQVCKFLVE 124
Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKT 209
+ +A F M + ++ + E G T
Sbjct: 125 S-GAAVFAMTYSDMQTAADKCEEMEEGYT 152
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
N +G T LH A GH EIV+ L++ F + +++ T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ------------------FGVNVNAADSDGWTPLH 108
Query: 130 EAVSQGNVDVVKILT 144
A S NV V K L
Sbjct: 109 CAASCNNVQVCKFLV 123
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 80/225 (35%), Gaps = 29/225 (12%)
Query: 106 PESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMA 165
P+ G P R E N L +AV +VD+V+ L + G TPL+ A
Sbjct: 9 PQEG--PTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 66
Query: 166 AEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAX 225
+ D+V LL + NG T AA+ A
Sbjct: 67 VQMSRE----------------DIVELLLRHGADPVLRKKNGATPFILAAI---AGSVKL 107
Query: 226 XXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS----NIADKDR---- 277
E D YG+T AA YG + + L + + + D++R
Sbjct: 108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 278 KMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVS 322
TAL AA KG ++ ++ DN G N L +A++S
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
TAL +A +G+V+V+KIL E + +N G+ L A LL + S
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA------------LLSSDDSD 217
Query: 186 SFDMVLALLENSTSVSHEGPNGKTAL 211
+ LL++ V+ G GKT L
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPL 243
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L A ++G+V V+ L + +P + N +GKT L + M+ G S
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---------MMFG--------ST 48
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
+ L LL+ S + + +G + +H AA F +DT D G PI
Sbjct: 49 AIALELLKQGASPNVQDTSGTSPVHDAARTGF-LDTLKVLVEHGADVNV--PDGTGALPI 105
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKD-RKMTALHLAAGKGDARTVERIISGN 301
H A G+ V+ L + S++ +D R +T L LA +G A+ + I+ G+
Sbjct: 106 HLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRG-AQDLVDILQGH 155
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 51 STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGV 110
ST E+L++ + +Q + G +P+H AA+ G + ++VL+E D +G
Sbjct: 47 STAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD---GTGA 102
Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE--Y 168
P +H AV +G+ VV L E + A G TPL +A +
Sbjct: 103 LP---------------IHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGA 145
Query: 169 ENRSDMLRG 177
++ D+L+G
Sbjct: 146 QDLVDILQG 154
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 76/211 (36%), Gaps = 33/211 (15%)
Query: 123 EKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
E N L +AV +VD+V+ L + G TPL+ A +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----------- 52
Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQY 242
D+V LL + NG T AA+ A E D Y
Sbjct: 53 -----DIVELLLRHGADPVLRKKNGATPFLLAAI---AGSVKLLKLFLSKGADVNECDFY 104
Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSASNI-------ADKDR----KMTALHLAAGKGDA 291
G+T AA YG + + L + +N+ D++R TAL AA KG
Sbjct: 105 GFTAFMEAAVYGKVKALKFLY---KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 292 RTVERIISGNPKCYELVDNRGCNFLHYAMVS 322
++ ++ DN G N L +A++S
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLS 192
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
TAL +A +G+V+V+KIL E + +N G+ L A LL + S
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA------------LLSSDDSD 197
Query: 186 SFDMVLALLENSTSVSHEGPNGKTAL 211
+ LL++ V+ G GKT L
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPL 223
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G +H AA+ G + ++ L+E F+ + + +NE N LH A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE------------------FQADVNIEDNEGNLPLHLAA 111
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEY 168
+G++ VV+ L + N+ G T +A Y
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 76 PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG 135
PLH AA +IV++L+ SG++ +++ NTAL+ AV G
Sbjct: 65 PLHQAATLEDTKIVKILLF-------------SGLDD-----SQFDDKGNTALYYAVDSG 106
Query: 136 NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL 193
N VK+ +++ + KT Y A + S + L E ++FD+ + L
Sbjct: 107 NXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE--IPSTFDLAILL 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 77 LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGN 136
+H AA+ G + ++ L+E F+ + + +NE N LH A +G+
Sbjct: 74 IHDAARAGFLDTLQTLLE------------------FQADVNIEDNEGNLPLHLAAKEGH 115
Query: 137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEY 168
+ VV+ L + N+ G T +A Y
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR--------------- 114
++ G+T LH + +F +V+ L++ + D++ +G P
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 115 --QMIRMVN-NEK-----NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAA 166
Q+ R+ N N K TAL AVS G VDVVK L + ++ G T L A
Sbjct: 166 VLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCAC 224
Query: 167 EYENRSDMLRGLL 179
E+ ++ + GLL
Sbjct: 225 EHGHKE--IAGLL 235
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHINII----SSERENVSTKFVEEILEK----CPALLLQ--VNAKGDTPLHLAAKFG 84
NT+LH ++ S E + + +L+ CP + L+ N +G TPL LAAK G
Sbjct: 186 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 245
Query: 85 HFEIVRVLIER 95
EI R +++R
Sbjct: 246 KIEIFRHILQR 256
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE-KNTAL--- 128
G+ PL LAA +++V L+E + G ++ + +N +N+AL
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 208
Query: 129 -HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
++ + Q + + E+ +N+ G TPL +AA+ E + ++ R +L+ S +
Sbjct: 209 MYDGLLQMGARLCPTVQLEE-----ISNHQGLTPLKLAAK-EGKIEIFRHILQREFSGPY 262
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
+A G +P+H AA+ G + ++VL+E G + + +++ + +H
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEH-------------GAD-----VNALDSTGSLPIH 112
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE--YENRSDMLRG 177
A+ +G+ VV L E + A+ G TPL +A + +N D+L+G
Sbjct: 113 LAIREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNLMDILQG 160
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L A ++G+V V+ L + +P + N +GKT L + M+ G S
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---------MMFG--------SP 54
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
+ L LL+ S + + +G + +H AA F +DT D G PI
Sbjct: 55 AVALELLKQGASPNVQDASGTSPVHDAARTGF-LDT--LKVLVEHGADVNALDSTGSLPI 111
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERIISGN 301
H A G+ V+ L S++ +D +T L LA +G A+ + I+ G+
Sbjct: 112 HLAIREGHSSVVSFL----APESDLHHRDASGLTPLELARQRG-AQNLMDILQGH 161
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
+A G +P+H AA+ G + ++VL+E G + + +++ + +H
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEH-------------GAD-----VNALDSTGSLPIH 114
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE--YENRSDMLRG 177
A+ +G+ VV L E + A+ G TPL +A + +N D+L+G
Sbjct: 115 LAIREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNLMDILQG 162
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
L A ++G+V V+ L + +P + N +GKT L + M+ G S
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---------MMFG--------SP 56
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
+ L LL+ S + + +G + +H AA F +DT D G PI
Sbjct: 57 AVALELLKQGASPNVQDASGTSPVHDAARTGF-LDT--LKVLVEHGADVNALDSTGSLPI 113
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERIISGN 301
H A G+ V+ L S++ +D +T L LA +G A+ + I+ G+
Sbjct: 114 HLAIREGHSSVVSFL----APESDLHHRDASGLTPLELARQRG-AQNLMDILQGH 163
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHINII----SSERENVSTKFVEEILEK----CPALLLQ--VNAKGDTPLHLAAKFG 84
NT+LH ++ S E + + +L+ CP + L+ N +G TPL LAAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232
Query: 85 HFEIVRVLIER 95
EI R +++R
Sbjct: 233 KIEIFRHILQR 243
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 30 TAKAKNTILH--INIISSERENVS--TKFVEEILEK----CPALLLQ--VNAKGDTPLHL 79
T NT+LH + I + EN++ T + +L+ CP + L+ N + TPL L
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 80 AAKFGHFEIVRVLIER 95
AAK G EI R +++R
Sbjct: 233 AAKEGKIEIFRHILQR 248
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
D+ G IH AA G T+ LLE Q+ NI D + + LHLAA +G R VE ++
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFEIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
G+ +H AA+ G + ++ L+E F+ + + +NE N LH A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLE------------------FQADVNIEDNEGNLPLHLAA 111
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEY 168
+G++ VV+ L + N+ G T +A Y
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK--MTALHLAAGKGDARTVER 296
D+ G T + + A G+ + V LL E + +++ +D + +TALH+AAG VE
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
++ E+ D RG L A R +L+ P
Sbjct: 129 LVELGADI-EVEDERGLTALELA---------REILKTTP 158
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRV 91
KA +T L+ ++ V F + +E L Q N GDT LH AA G+ +IV++
Sbjct: 104 KAGSTALYWACHGGHKDIVEXLFTQPNIE-----LNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 92 LIERA 96
L+ +
Sbjct: 159 LLAKG 163
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 27/124 (21%)
Query: 30 TAKAKNTILHINIISSERENVSTKFVE-------EILEKCPALLLQVNA---KGDTPLHL 79
T+K + ++ N ++ + E++ E L +C + VN G T L+
Sbjct: 53 TSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYW 112
Query: 80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDV 139
A GH +IV L + + + N +TALH A +G D+
Sbjct: 113 ACHGGHKDIVEXLFTQPNIE-----------------LNQQNKLGDTALHAAAWKGYADI 155
Query: 140 VKIL 143
V++L
Sbjct: 156 VQLL 159
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVEE----ILEKCPALLLQVNAK------GDTPLHLAAKFG 84
NT+LH + ++ +TKFV + +L KC L N + G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 85 HFEIVRVLIER 95
I + +I R
Sbjct: 237 KIGIFQHIIRR 247
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 70 NAKGDTPLHLAAKFGHFEIVRVLIE 94
N +G+TPL +A+K+G EIV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVEE----ILEKCPALLLQ------VNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKFV + +L KC L +N G +PL +AAK G
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 85 HFEIVRVLIER 95
I + +I R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK--MTALHLAAGKGDARTVER 296
D+ G T + + A G+ + V LL E + +++ +D + +TALH+AAG VE
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
++ E+ D RG L A R +L+ P
Sbjct: 130 LVELGADI-EVEDERGLTALELA---------REILKTTP 159
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC 304
TP+ A G++ VNLLL Q +++ + + +H AA +G V +I+
Sbjct: 71 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 305 YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
+ + G L+ A + ++ LLE+ + +++G + ++PLH +A +E
Sbjct: 128 DHKISHLG-TPLYLACENQQRACVKKLLESG----ADVNQGKGQ-DSPLHAVARTASEEL 181
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
TALH A N +VK L E + GKTP+ +AA+ E R +++ L++ S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQ-EGRIEVVXYLIQQGAS 338
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVE----EIL----EKCPALLLQ--VNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKFV EIL + P L L+ N KG TPL LAA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 85 HFEIVRVLIER 95
++ +++R
Sbjct: 245 KIGVLAYILQR 255
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 244 W-TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
W TP+ A G++ VNLLL Q +++ + + +H AA +G V +I+
Sbjct: 125 WHTPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIA 178
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 56 EEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQ 115
EE++E C ++ +A LH A FG + +++ R L++R PE G + +
Sbjct: 692 EELVEACAIIIWTASA-----LHAAVNFGQYPYGGLILNRPTLSRRF--MPEKGSAEYEE 744
Query: 116 MIRMVNNEK---NTALHEAVSQGNVDVVKILTR 145
+ + N +K T + + ++ V++IL+R
Sbjct: 745 LRK--NPQKAYLKTITPKFQTLIDLSVIEILSR 775
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 56 EEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQ 115
EE++E C ++ +A LH A FG + +++ R L++R PE G + +
Sbjct: 692 EELVEACAIIIWTASA-----LHAAVNFGQYPYGGLILNRPTLSRRF--MPEKGSAEYEE 744
Query: 116 MIRMVNNEK---NTALHEAVSQGNVDVVKILTR 145
+ + N +K T + + ++ V++IL+R
Sbjct: 745 LRK--NPQKAYLKTITPKFQTLIDLSVIEILSR 775
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNN 122
L + V+ G+TPLH + E+V+ L++ GD ES + + ++ VNN
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL---VKAVKSVNN 177
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAA 166
N E TALH A+ N +V L S +++G TPL+ AA
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAA 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,102,029
Number of Sequences: 62578
Number of extensions: 429852
Number of successful extensions: 1754
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 465
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)