Query 015739
Match_columns 401
No_of_seqs 213 out of 885
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 5.2E-12 1.1E-16 97.9 9.4 62 215-276 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 9.8E-12 2.1E-16 96.2 9.2 62 215-276 2-63 (64)
3 KOG4005 Transcription factor X 99.3 3.4E-11 7.4E-16 115.9 13.4 84 213-296 64-147 (292)
4 KOG4343 bZIP transcription fac 99.2 6.3E-11 1.4E-15 123.8 8.3 70 214-283 277-346 (655)
5 KOG0709 CREB/ATF family transc 99.1 1.1E-10 2.3E-15 120.6 6.1 75 214-295 247-321 (472)
6 KOG3584 cAMP response element 99.0 3.3E-10 7.1E-15 111.6 7.2 57 214-270 287-343 (348)
7 PF07716 bZIP_2: Basic region 99.0 2.4E-09 5.2E-14 80.8 8.8 51 216-267 3-53 (54)
8 KOG0837 Transcriptional activa 98.3 2E-06 4.4E-11 84.1 9.0 60 217-290 205-264 (279)
9 PF12498 bZIP_C: Basic leucine 98.1 3.8E-06 8.3E-11 73.2 5.3 102 285-394 1-114 (115)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.1 5E-08 1.1E-12 80.9 -6.4 56 214-269 26-81 (92)
11 KOG4571 Activating transcripti 97.6 0.00052 1.1E-08 68.4 10.2 55 215-269 223-278 (294)
12 KOG4196 bZIP transcription fac 97.5 0.0007 1.5E-08 60.7 9.0 66 215-294 50-115 (135)
13 KOG3863 bZIP transcription fac 97.1 0.00099 2.1E-08 71.9 6.5 65 219-290 491-555 (604)
14 KOG3119 Basic region leucine z 96.9 0.0039 8.4E-08 61.2 8.6 43 222-264 198-240 (269)
15 TIGR02449 conserved hypothetic 95.8 0.091 2E-06 42.2 8.9 56 241-299 2-57 (65)
16 PF06005 DUF904: Protein of un 95.7 0.16 3.4E-06 41.3 10.1 54 239-292 4-57 (72)
17 PF07989 Microtub_assoc: Micro 95.6 0.11 2.5E-06 42.4 8.8 59 241-299 2-68 (75)
18 PF02183 HALZ: Homeobox associ 95.5 0.044 9.6E-07 40.9 5.6 42 250-291 2-43 (45)
19 PF06156 DUF972: Protein of un 95.3 0.11 2.4E-06 45.1 8.6 51 244-294 6-56 (107)
20 PF06156 DUF972: Protein of un 95.0 0.13 2.8E-06 44.7 7.9 50 239-288 8-57 (107)
21 PRK10884 SH3 domain-containing 94.9 0.26 5.7E-06 47.1 10.7 52 239-290 118-169 (206)
22 PRK13169 DNA replication intia 94.9 0.14 3E-06 44.8 7.8 49 244-292 6-54 (110)
23 PRK13729 conjugal transfer pil 94.8 0.065 1.4E-06 56.9 6.9 51 239-289 76-126 (475)
24 COG3074 Uncharacterized protei 94.8 0.21 4.5E-06 41.1 8.2 53 240-292 19-71 (79)
25 PRK13169 DNA replication intia 94.6 0.23 4.9E-06 43.5 8.5 50 239-288 8-57 (110)
26 PF08614 ATG16: Autophagy prot 94.6 0.96 2.1E-05 42.1 13.2 81 214-296 112-192 (194)
27 TIGR02894 DNA_bind_RsfA transc 94.5 0.32 6.9E-06 45.3 9.5 53 247-299 98-150 (161)
28 PRK10884 SH3 domain-containing 94.4 0.77 1.7E-05 44.0 12.3 43 239-281 125-167 (206)
29 PF14197 Cep57_CLD_2: Centroso 94.2 0.52 1.1E-05 38.0 9.1 55 238-292 11-65 (69)
30 TIGR02449 conserved hypothetic 94.1 0.47 1E-05 38.2 8.7 56 239-294 7-62 (65)
31 PF06005 DUF904: Protein of un 93.8 0.76 1.6E-05 37.4 9.4 52 241-292 13-64 (72)
32 PRK11637 AmiB activator; Provi 93.3 1.7 3.6E-05 44.9 13.4 59 232-290 68-126 (428)
33 PRK15422 septal ring assembly 93.3 0.63 1.4E-05 38.9 8.3 51 241-291 20-70 (79)
34 COG4467 Regulator of replicati 93.0 0.5 1.1E-05 41.7 7.7 49 244-292 6-54 (114)
35 PF11559 ADIP: Afadin- and alp 92.9 3.3 7.2E-05 36.8 13.0 74 218-291 45-118 (151)
36 PF07888 CALCOCO1: Calcium bin 92.6 2.3 5E-05 46.3 13.6 81 218-298 150-230 (546)
37 PF11559 ADIP: Afadin- and alp 92.5 1.8 4E-05 38.4 10.8 80 220-299 40-119 (151)
38 PF13851 GAS: Growth-arrest sp 91.7 4.4 9.6E-05 38.4 13.0 85 214-298 68-167 (201)
39 PF04156 IncA: IncA protein; 91.6 6.1 0.00013 36.0 13.3 73 227-299 118-190 (191)
40 PF13747 DUF4164: Domain of un 91.5 5.9 0.00013 33.3 12.1 77 214-290 7-83 (89)
41 PF04880 NUDE_C: NUDE protein, 91.4 0.33 7.2E-06 45.3 5.0 52 241-296 2-53 (166)
42 PF10186 Atg14: UV radiation r 91.4 5.5 0.00012 37.9 13.4 13 279-291 124-136 (302)
43 KOG1414 Transcriptional activa 91.0 0.01 2.2E-07 61.0 -5.8 51 213-263 149-203 (395)
44 COG4942 Membrane-bound metallo 90.8 3.8 8.2E-05 43.4 12.6 73 218-290 38-110 (420)
45 PF05266 DUF724: Protein of un 90.7 5.8 0.00013 37.6 12.7 79 216-294 87-179 (190)
46 PF10224 DUF2205: Predicted co 90.2 2.1 4.4E-05 35.8 8.1 45 242-286 19-63 (80)
47 PF04102 SlyX: SlyX; InterPro 89.8 1.7 3.8E-05 34.6 7.2 48 238-285 3-50 (69)
48 PF04899 MbeD_MobD: MbeD/MobD 89.8 4.9 0.00011 32.7 9.8 59 241-299 9-67 (70)
49 PF09726 Macoilin: Transmembra 89.6 4.8 0.0001 45.0 12.8 38 244-281 543-580 (697)
50 KOG4005 Transcription factor X 89.5 5 0.00011 40.0 11.4 81 214-294 69-152 (292)
51 PF15070 GOLGA2L5: Putative go 89.4 6.1 0.00013 43.6 13.2 75 223-297 106-218 (617)
52 PF02183 HALZ: Homeobox associ 89.1 1.6 3.5E-05 32.6 6.0 40 257-296 2-41 (45)
53 KOG3119 Basic region leucine z 89.1 2.3 5.1E-05 42.0 9.0 61 239-299 194-254 (269)
54 PF06785 UPF0242: Uncharacteri 88.9 2.1 4.5E-05 44.4 8.6 54 233-286 121-174 (401)
55 TIGR03752 conj_TIGR03752 integ 88.9 3.9 8.4E-05 43.9 10.9 53 241-293 75-128 (472)
56 TIGR00219 mreC rod shape-deter 88.8 0.91 2E-05 45.0 6.0 45 247-294 67-111 (283)
57 PF11932 DUF3450: Protein of u 88.6 6.8 0.00015 37.7 11.6 44 236-279 53-96 (251)
58 PF08614 ATG16: Autophagy prot 88.6 3.3 7.2E-05 38.5 9.2 39 249-287 119-157 (194)
59 COG4467 Regulator of replicati 88.0 2.2 4.7E-05 37.8 7.1 52 239-290 8-61 (114)
60 PF07106 TBPIP: Tat binding pr 87.9 2.6 5.7E-05 38.2 7.9 47 240-286 87-135 (169)
61 PF11932 DUF3450: Protein of u 87.7 12 0.00025 36.1 12.6 44 243-286 53-96 (251)
62 PF09304 Cortex-I_coil: Cortex 87.6 8.1 0.00017 34.1 10.3 55 218-272 16-70 (107)
63 PRK11637 AmiB activator; Provi 87.3 13 0.00028 38.4 13.5 67 223-289 182-255 (428)
64 PHA02562 46 endonuclease subun 87.0 10 0.00023 39.7 12.7 43 241-283 360-402 (562)
65 PRK10803 tol-pal system protei 86.9 4.5 9.7E-05 39.7 9.4 49 240-288 55-103 (263)
66 PF12325 TMF_TATA_bd: TATA ele 86.9 7.6 0.00016 34.5 9.9 16 273-288 95-110 (120)
67 PRK09039 hypothetical protein; 86.6 8.5 0.00019 39.3 11.5 52 242-293 133-184 (343)
68 COG3883 Uncharacterized protei 86.5 6.1 0.00013 39.6 10.1 55 238-292 37-91 (265)
69 PRK15422 septal ring assembly 86.3 7.2 0.00016 32.7 8.8 53 239-291 4-63 (79)
70 TIGR02894 DNA_bind_RsfA transc 86.2 6 0.00013 37.1 9.3 55 242-296 100-154 (161)
71 COG4026 Uncharacterized protei 86.2 6.5 0.00014 39.1 9.9 47 241-287 144-190 (290)
72 PRK04406 hypothetical protein; 86.0 6.8 0.00015 32.1 8.5 48 239-293 11-58 (75)
73 PRK02119 hypothetical protein; 85.9 6.5 0.00014 32.0 8.3 48 238-292 8-55 (73)
74 PF10473 CENP-F_leu_zip: Leuci 85.8 26 0.00056 32.0 13.0 66 222-294 35-100 (140)
75 PRK02119 hypothetical protein; 85.8 5 0.00011 32.6 7.6 52 241-299 4-55 (73)
76 PF14197 Cep57_CLD_2: Centroso 85.8 4.6 9.9E-05 32.6 7.3 48 241-288 21-68 (69)
77 PRK09039 hypothetical protein; 85.7 5.2 0.00011 40.8 9.4 50 237-286 135-184 (343)
78 PF09728 Taxilin: Myosin-like 85.3 6.4 0.00014 39.7 9.8 60 240-299 245-304 (309)
79 smart00340 HALZ homeobox assoc 85.3 1.9 4.2E-05 32.3 4.5 27 262-288 7-33 (44)
80 PF09755 DUF2046: Uncharacteri 85.1 5.2 0.00011 40.9 9.0 58 242-299 23-80 (310)
81 PF07888 CALCOCO1: Calcium bin 85.1 12 0.00025 41.1 12.2 42 256-297 420-461 (546)
82 PF14662 CCDC155: Coiled-coil 84.9 6 0.00013 38.0 8.9 51 243-293 5-55 (193)
83 PF10186 Atg14: UV radiation r 84.8 22 0.00049 33.8 12.8 47 235-281 59-105 (302)
84 PF04111 APG6: Autophagy prote 84.3 18 0.00039 36.6 12.4 65 230-294 69-133 (314)
85 PF05266 DUF724: Protein of un 84.3 19 0.00041 34.2 11.8 59 233-291 125-183 (190)
86 PRK00888 ftsB cell division pr 84.2 3.1 6.8E-05 35.8 6.1 23 266-288 40-62 (105)
87 PF08172 CASP_C: CASP C termin 84.0 4.9 0.00011 39.6 8.1 41 239-286 93-133 (248)
88 PF12325 TMF_TATA_bd: TATA ele 83.9 27 0.00057 31.1 11.9 18 281-298 96-113 (120)
89 COG4026 Uncharacterized protei 83.8 7.5 0.00016 38.6 9.2 57 238-294 134-190 (290)
90 PRK13922 rod shape-determining 83.8 7.4 0.00016 37.7 9.2 42 247-292 70-111 (276)
91 KOG1962 B-cell receptor-associ 83.8 3.7 8E-05 40.0 7.0 34 250-283 176-209 (216)
92 PF08317 Spc7: Spc7 kinetochor 83.5 8.7 0.00019 38.6 9.8 60 239-298 209-268 (325)
93 PF05667 DUF812: Protein of un 83.4 8.7 0.00019 42.3 10.5 63 236-298 325-387 (594)
94 PF12711 Kinesin-relat_1: Kine 83.2 6.8 0.00015 33.2 7.5 40 251-290 22-67 (86)
95 PF09738 DUF2051: Double stran 83.2 8.4 0.00018 39.1 9.6 86 214-300 88-173 (302)
96 PF12777 MT: Microtubule-bindi 83.1 8.7 0.00019 38.9 9.7 59 240-298 229-287 (344)
97 PF10805 DUF2730: Protein of u 83.0 13 0.00028 32.0 9.3 48 245-292 48-97 (106)
98 PF07106 TBPIP: Tat binding pr 82.9 5.2 0.00011 36.3 7.3 25 242-266 112-136 (169)
99 PF15058 Speriolin_N: Sperioli 82.8 2.2 4.8E-05 41.0 5.0 33 242-282 8-40 (200)
100 PF06810 Phage_GP20: Phage min 82.6 8.1 0.00018 35.4 8.5 32 237-268 32-66 (155)
101 PRK04325 hypothetical protein; 82.6 9.5 0.00021 31.0 7.9 48 239-293 9-56 (74)
102 PF14915 CCDC144C: CCDC144C pr 82.5 15 0.00032 37.6 10.9 73 227-299 181-253 (305)
103 smart00338 BRLZ basic region l 82.5 5.3 0.00012 30.9 6.3 36 261-296 27-62 (65)
104 PRK02793 phi X174 lysis protei 82.5 8.6 0.00019 31.1 7.6 49 239-294 8-56 (72)
105 PRK00295 hypothetical protein; 82.4 11 0.00024 30.2 8.1 49 239-294 5-53 (68)
106 PF12329 TMF_DNA_bd: TATA elem 82.3 20 0.00042 29.2 9.7 58 238-295 11-68 (74)
107 PF08647 BRE1: BRE1 E3 ubiquit 82.3 29 0.00063 29.2 12.1 69 221-289 6-74 (96)
108 PF02403 Seryl_tRNA_N: Seryl-t 82.3 27 0.00058 29.2 10.9 72 226-297 10-97 (108)
109 PF05278 PEARLI-4: Arabidopsis 82.3 25 0.00054 35.5 12.3 55 238-292 206-260 (269)
110 PF15294 Leu_zip: Leucine zipp 82.2 4.8 0.0001 40.6 7.3 45 244-288 130-174 (278)
111 PHA03162 hypothetical protein; 82.1 4.1 8.8E-05 37.1 6.1 29 235-263 9-37 (135)
112 PF10224 DUF2205: Predicted co 82.1 11 0.00023 31.6 8.2 58 236-293 5-63 (80)
113 KOG1414 Transcriptional activa 82.0 0.27 5.9E-06 50.8 -1.4 46 214-259 281-326 (395)
114 KOG1029 Endocytic adaptor prot 82.0 18 0.00038 41.6 12.1 29 266-294 429-457 (1118)
115 PF14662 CCDC155: Coiled-coil 82.0 18 0.00039 34.9 10.7 40 244-283 100-139 (193)
116 PRK02793 phi X174 lysis protei 81.9 11 0.00024 30.5 8.1 51 242-299 4-54 (72)
117 KOG2264 Exostosin EXT1L [Signa 81.8 15 0.00032 40.9 11.3 53 238-290 92-144 (907)
118 PF11180 DUF2968: Protein of u 81.7 36 0.00078 32.8 12.6 78 221-298 108-185 (192)
119 PF12718 Tropomyosin_1: Tropom 81.6 14 0.00031 33.4 9.5 33 237-269 33-65 (143)
120 PF10805 DUF2730: Protein of u 81.5 14 0.00031 31.7 9.1 58 238-295 34-93 (106)
121 PHA03155 hypothetical protein; 81.4 9.7 0.00021 34.0 8.1 25 240-264 9-33 (115)
122 COG1579 Zn-ribbon protein, pos 81.4 39 0.00084 33.5 13.1 52 242-293 92-143 (239)
123 PRK00846 hypothetical protein; 81.4 13 0.00027 31.0 8.3 49 239-294 13-61 (77)
124 PF12808 Mto2_bdg: Micro-tubul 81.4 4.7 0.0001 31.3 5.4 50 236-288 1-50 (52)
125 PF12718 Tropomyosin_1: Tropom 81.2 15 0.00033 33.2 9.6 28 242-269 31-58 (143)
126 PF05812 Herpes_BLRF2: Herpesv 81.0 14 0.00031 33.0 9.1 28 237-264 1-28 (118)
127 PRK04325 hypothetical protein; 81.0 11 0.00024 30.7 7.8 53 240-299 3-55 (74)
128 TIGR02977 phageshock_pspA phag 80.9 22 0.00048 33.8 11.0 57 238-294 98-154 (219)
129 PF07798 DUF1640: Protein of u 80.5 9.5 0.00021 35.2 8.2 49 242-290 47-96 (177)
130 PF15035 Rootletin: Ciliary ro 80.4 12 0.00026 35.3 9.0 60 240-299 68-127 (182)
131 PF04102 SlyX: SlyX; InterPro 80.3 11 0.00024 30.0 7.5 52 243-294 1-52 (69)
132 TIGR01843 type_I_hlyD type I s 80.3 22 0.00048 35.4 11.3 26 277-302 249-274 (423)
133 COG4942 Membrane-bound metallo 80.1 20 0.00043 38.2 11.3 17 240-256 67-83 (420)
134 KOG3564 GTPase-activating prot 80.1 15 0.00032 40.1 10.4 85 214-301 27-111 (604)
135 PF04111 APG6: Autophagy prote 80.0 46 0.00099 33.7 13.5 78 235-312 60-144 (314)
136 PRK04406 hypothetical protein; 80.0 12 0.00026 30.7 7.7 52 241-299 6-57 (75)
137 PF08172 CASP_C: CASP C termin 80.0 8.9 0.00019 37.8 8.3 55 242-296 82-136 (248)
138 PF07058 Myosin_HC-like: Myosi 79.9 5.8 0.00013 40.8 7.1 49 248-296 2-50 (351)
139 PRK00736 hypothetical protein; 79.8 13 0.00028 29.8 7.7 49 239-294 5-53 (68)
140 PRK00295 hypothetical protein; 79.8 16 0.00035 29.2 8.3 49 244-299 3-51 (68)
141 PF09304 Cortex-I_coil: Cortex 79.6 44 0.00095 29.6 13.2 59 233-291 10-68 (107)
142 PRK00888 ftsB cell division pr 79.5 7.8 0.00017 33.4 6.9 32 235-266 30-61 (105)
143 PF10211 Ax_dynein_light: Axon 79.3 40 0.00087 31.7 12.1 40 241-280 122-161 (189)
144 KOG1962 B-cell receptor-associ 78.6 21 0.00046 34.9 10.2 44 244-287 149-192 (216)
145 PF06785 UPF0242: Uncharacteri 78.6 26 0.00056 36.7 11.2 70 217-290 74-157 (401)
146 PF09744 Jnk-SapK_ap_N: JNK_SA 78.4 50 0.0011 30.7 12.2 41 246-286 96-136 (158)
147 cd07596 BAR_SNX The Bin/Amphip 78.2 51 0.0011 29.6 12.4 65 221-288 113-184 (218)
148 KOG0982 Centrosomal protein Nu 78.2 30 0.00065 37.2 11.8 57 240-296 298-354 (502)
149 COG3883 Uncharacterized protei 78.0 18 0.00039 36.4 9.7 27 240-266 60-86 (265)
150 PF12329 TMF_DNA_bd: TATA elem 77.8 30 0.00066 28.1 9.4 57 240-296 6-62 (74)
151 KOG0250 DNA repair protein RAD 77.7 30 0.00066 40.7 12.6 39 241-279 374-413 (1074)
152 KOG2391 Vacuolar sorting prote 77.6 16 0.00034 38.1 9.4 54 239-292 225-278 (365)
153 COG1579 Zn-ribbon protein, pos 77.2 38 0.00083 33.5 11.6 34 228-261 41-74 (239)
154 PF04977 DivIC: Septum formati 76.9 8.2 0.00018 30.0 5.8 22 241-262 26-47 (80)
155 KOG4196 bZIP transcription fac 76.9 19 0.00042 32.9 8.7 55 237-292 45-99 (135)
156 PF10174 Cast: RIM-binding pro 76.8 14 0.00031 41.9 9.7 63 235-297 297-359 (775)
157 PF07558 Shugoshin_N: Shugoshi 76.6 2.5 5.3E-05 31.6 2.6 40 221-261 4-43 (46)
158 PRK10698 phage shock protein P 76.6 35 0.00075 32.9 11.0 58 239-296 99-156 (222)
159 KOG0243 Kinesin-like protein [ 76.5 21 0.00045 41.9 10.9 69 222-290 414-492 (1041)
160 TIGR02209 ftsL_broad cell divi 76.3 11 0.00023 30.1 6.4 36 253-288 24-59 (85)
161 KOG4571 Activating transcripti 76.1 34 0.00074 34.9 11.2 27 243-269 259-285 (294)
162 KOG0288 WD40 repeat protein Ti 76.0 40 0.00086 36.2 12.0 47 218-264 27-73 (459)
163 COG2433 Uncharacterized conser 75.9 30 0.00064 38.6 11.4 33 238-270 435-467 (652)
164 PF04849 HAP1_N: HAP1 N-termin 75.9 20 0.00043 36.7 9.6 29 254-282 235-263 (306)
165 KOG1103 Predicted coiled-coil 75.7 14 0.0003 39.0 8.5 67 228-294 227-293 (561)
166 PF02403 Seryl_tRNA_N: Seryl-t 75.6 20 0.00044 30.0 8.1 10 279-288 86-95 (108)
167 KOG1318 Helix loop helix trans 75.4 1.1E+02 0.0024 32.8 15.0 80 214-293 225-323 (411)
168 KOG3335 Predicted coiled-coil 75.3 6.5 0.00014 37.4 5.6 43 215-263 88-130 (181)
169 KOG1853 LIS1-interacting prote 75.2 30 0.00066 35.1 10.4 62 231-296 125-186 (333)
170 PF10506 MCC-bdg_PDZ: PDZ doma 75.2 22 0.00048 28.8 7.8 56 243-298 2-57 (67)
171 PRK00736 hypothetical protein; 75.0 24 0.00051 28.3 8.0 49 244-299 3-51 (68)
172 PF14988 DUF4515: Domain of un 75.0 64 0.0014 31.0 12.3 54 242-295 152-205 (206)
173 smart00787 Spc7 Spc7 kinetocho 75.0 42 0.0009 34.2 11.6 57 240-296 205-261 (312)
174 PF05529 Bap31: B-cell recepto 74.9 36 0.00079 31.4 10.4 36 253-288 154-189 (192)
175 PRK10803 tol-pal system protei 74.6 14 0.0003 36.4 7.9 29 239-267 61-89 (263)
176 KOG2077 JNK/SAPK-associated pr 74.3 11 0.00024 41.7 7.7 52 242-293 325-376 (832)
177 PF05103 DivIVA: DivIVA protei 74.2 1.8 4E-05 36.9 1.6 45 239-283 25-69 (131)
178 KOG0250 DNA repair protein RAD 74.1 37 0.0008 40.0 12.1 66 224-289 364-430 (1074)
179 PF15030 DUF4527: Protein of u 74.1 66 0.0014 32.4 12.3 82 215-296 12-94 (277)
180 KOG4403 Cell surface glycoprot 74.0 28 0.0006 37.6 10.3 76 216-295 240-323 (575)
181 PF02388 FemAB: FemAB family; 74.0 17 0.00038 37.6 8.9 58 238-299 241-298 (406)
182 PF06216 RTBV_P46: Rice tungro 74.0 17 0.00036 36.9 8.3 45 225-272 67-111 (389)
183 PF09744 Jnk-SapK_ap_N: JNK_SA 73.9 23 0.00051 32.8 8.8 16 249-264 85-100 (158)
184 PF15619 Lebercilin: Ciliary p 73.5 31 0.00067 32.8 9.7 35 261-295 158-192 (194)
185 PF04977 DivIC: Septum formati 73.5 18 0.0004 28.0 6.9 31 256-286 20-50 (80)
186 KOG1853 LIS1-interacting prote 73.4 20 0.00043 36.3 8.7 31 249-279 94-124 (333)
187 PRK00846 hypothetical protein; 73.1 26 0.00056 29.2 7.9 51 242-299 9-59 (77)
188 KOG3654 Uncharacterized CH dom 73.0 86 0.0019 34.7 13.7 81 208-296 382-462 (708)
189 PRK05431 seryl-tRNA synthetase 72.8 49 0.0011 34.7 11.9 55 245-299 41-98 (425)
190 COG3074 Uncharacterized protei 72.8 41 0.00089 28.0 8.9 31 240-270 5-35 (79)
191 PF10211 Ax_dynein_light: Axon 72.6 40 0.00086 31.8 10.2 60 234-293 122-182 (189)
192 PF04642 DUF601: Protein of un 72.6 4.2 9.2E-05 40.8 3.8 58 239-296 217-274 (311)
193 PF07407 Seadorna_VP6: Seadorn 72.5 13 0.00028 38.8 7.3 13 240-252 47-59 (420)
194 PF04156 IncA: IncA protein; 72.2 78 0.0017 28.8 13.4 53 244-296 128-180 (191)
195 PF09789 DUF2353: Uncharacteri 72.2 32 0.00069 35.4 10.0 46 242-287 68-113 (319)
196 PF08317 Spc7: Spc7 kinetochor 72.0 23 0.0005 35.7 9.0 56 241-296 232-291 (325)
197 COG1196 Smc Chromosome segrega 71.8 51 0.0011 38.8 12.8 59 238-296 438-496 (1163)
198 PF01166 TSC22: TSC-22/dip/bun 71.8 5.1 0.00011 31.9 3.4 26 256-281 17-42 (59)
199 PF00769 ERM: Ezrin/radixin/mo 71.8 66 0.0014 31.5 11.8 56 242-297 64-119 (246)
200 PF05837 CENP-H: Centromere pr 71.6 33 0.0007 29.5 8.6 57 239-296 17-73 (106)
201 KOG0977 Nuclear envelope prote 71.5 40 0.00087 37.1 11.1 50 239-288 141-190 (546)
202 PF09789 DUF2353: Uncharacteri 71.4 31 0.00068 35.5 9.8 25 240-264 87-111 (319)
203 PF10828 DUF2570: Protein of u 71.4 66 0.0014 27.7 10.7 53 241-293 34-86 (110)
204 PHA02562 46 endonuclease subun 71.4 82 0.0018 33.1 13.2 67 222-288 320-386 (562)
205 PLN03188 kinesin-12 family pro 71.3 12 0.00027 44.5 7.7 46 246-291 1173-1242(1320)
206 PF05700 BCAS2: Breast carcino 71.2 35 0.00075 32.7 9.6 33 262-294 177-209 (221)
207 PF04012 PspA_IM30: PspA/IM30 71.2 58 0.0013 30.5 11.0 44 243-286 102-145 (221)
208 PF06548 Kinesin-related: Kine 71.1 16 0.00035 39.3 7.9 46 247-292 404-473 (488)
209 PF05335 DUF745: Protein of un 70.9 45 0.00098 31.8 10.1 64 235-298 63-126 (188)
210 KOG3156 Uncharacterized membra 70.8 22 0.00048 34.8 8.1 49 249-299 97-146 (220)
211 PF00038 Filament: Intermediat 70.5 66 0.0014 31.4 11.5 39 250-288 213-251 (312)
212 PLN02678 seryl-tRNA synthetase 70.4 58 0.0013 34.8 11.9 56 244-299 45-103 (448)
213 PF08826 DMPK_coil: DMPK coile 70.4 36 0.00077 27.2 7.9 38 247-291 19-56 (61)
214 PF07412 Geminin: Geminin; In 70.3 23 0.0005 34.3 8.1 44 253-296 125-168 (200)
215 PF06419 COG6: Conserved oligo 70.2 78 0.0017 34.9 13.1 85 214-299 15-105 (618)
216 TIGR03752 conj_TIGR03752 integ 70.1 14 0.0003 39.9 7.2 54 242-295 83-137 (472)
217 PF09738 DUF2051: Double stran 70.0 27 0.00059 35.5 9.0 53 246-298 112-164 (302)
218 PF09726 Macoilin: Transmembra 69.9 69 0.0015 36.1 12.8 19 246-264 460-478 (697)
219 PF07716 bZIP_2: Basic region 69.8 14 0.0003 27.9 5.3 29 260-288 25-53 (54)
220 PF10482 CtIP_N: Tumour-suppre 69.8 34 0.00074 30.7 8.4 61 230-290 5-65 (120)
221 PF10205 KLRAQ: Predicted coil 69.5 56 0.0012 28.7 9.5 51 243-293 16-66 (102)
222 KOG0709 CREB/ATF family transc 69.5 21 0.00046 38.4 8.4 52 214-265 251-312 (472)
223 PF10473 CENP-F_leu_zip: Leuci 69.4 92 0.002 28.5 12.9 66 223-288 43-115 (140)
224 PF09730 BicD: Microtubule-ass 69.2 53 0.0012 37.3 11.7 50 247-296 98-150 (717)
225 PF05384 DegS: Sensor protein 69.1 1E+02 0.0022 28.8 11.8 78 223-300 18-124 (159)
226 PF05837 CENP-H: Centromere pr 69.0 21 0.00045 30.7 6.8 44 248-291 5-48 (106)
227 PRK13922 rod shape-determining 68.7 45 0.00099 32.3 9.9 46 235-284 65-110 (276)
228 PF04340 DUF484: Protein of un 68.7 20 0.00044 33.9 7.4 52 240-295 41-92 (225)
229 PRK14127 cell division protein 68.6 37 0.00081 29.9 8.4 18 241-258 32-49 (109)
230 PRK13729 conjugal transfer pil 68.5 28 0.0006 37.7 9.0 53 238-290 68-120 (475)
231 PF03961 DUF342: Protein of un 68.2 36 0.00078 35.6 9.7 54 238-291 347-406 (451)
232 PRK04863 mukB cell division pr 67.7 79 0.0017 38.7 13.4 20 219-238 322-341 (1486)
233 PF05700 BCAS2: Breast carcino 67.7 26 0.00056 33.5 7.9 37 257-293 179-215 (221)
234 PF09730 BicD: Microtubule-ass 67.6 52 0.0011 37.4 11.2 48 241-288 71-118 (717)
235 PF04849 HAP1_N: HAP1 N-termin 67.6 47 0.001 34.1 10.0 48 241-288 243-290 (306)
236 TIGR01000 bacteriocin_acc bact 67.6 73 0.0016 33.3 11.8 34 271-304 288-321 (457)
237 KOG1103 Predicted coiled-coil 67.5 55 0.0012 34.7 10.6 49 237-285 130-178 (561)
238 KOG1319 bHLHZip transcription 67.5 59 0.0013 31.7 10.1 32 219-250 59-90 (229)
239 PF15035 Rootletin: Ciliary ro 67.4 38 0.00083 32.0 8.8 39 255-293 76-114 (182)
240 KOG0288 WD40 repeat protein Ti 67.3 56 0.0012 35.1 10.8 26 244-269 46-71 (459)
241 PF00170 bZIP_1: bZIP transcri 67.2 56 0.0012 25.2 9.1 28 264-291 30-57 (64)
242 PRK04863 mukB cell division pr 67.0 90 0.0019 38.3 13.7 17 242-258 358-374 (1486)
243 PF07889 DUF1664: Protein of u 67.0 88 0.0019 28.2 10.6 56 238-293 67-122 (126)
244 PF04728 LPP: Lipoprotein leuc 66.9 62 0.0013 25.6 8.5 30 240-269 4-33 (56)
245 KOG4797 Transcriptional regula 66.9 13 0.00028 33.2 5.2 26 256-281 70-95 (123)
246 PF04999 FtsL: Cell division p 66.8 22 0.00048 29.3 6.4 39 250-288 32-70 (97)
247 PF10146 zf-C4H2: Zinc finger- 66.7 1.3E+02 0.0027 29.6 12.5 54 235-288 28-81 (230)
248 PF13805 Pil1: Eisosome compon 66.6 40 0.00086 34.1 9.2 68 218-289 127-194 (271)
249 PF00769 ERM: Ezrin/radixin/mo 66.5 85 0.0018 30.7 11.3 10 241-250 35-44 (246)
250 PF10481 CENP-F_N: Cenp-F N-te 66.0 81 0.0017 32.3 11.1 50 246-295 60-123 (307)
251 KOG0243 Kinesin-like protein [ 65.9 93 0.002 36.8 13.0 61 236-296 445-519 (1041)
252 KOG0999 Microtubule-associated 65.8 33 0.00071 38.2 9.0 53 246-298 170-225 (772)
253 PF05377 FlaC_arch: Flagella a 65.7 31 0.00067 27.2 6.5 42 241-296 2-43 (55)
254 TIGR02231 conserved hypothetic 65.6 1.1E+02 0.0023 32.7 12.7 43 251-293 129-171 (525)
255 PRK10963 hypothetical protein; 65.6 18 0.00039 34.6 6.4 50 241-294 39-88 (223)
256 PF03980 Nnf1: Nnf1 ; InterPr 65.5 10 0.00022 32.1 4.3 29 237-265 78-106 (109)
257 smart00787 Spc7 Spc7 kinetocho 65.4 1.5E+02 0.0033 30.2 13.2 8 30-37 11-18 (312)
258 KOG0804 Cytoplasmic Zn-finger 65.3 75 0.0016 34.5 11.3 29 266-294 395-423 (493)
259 KOG2391 Vacuolar sorting prote 65.3 35 0.00076 35.7 8.7 69 238-306 231-299 (365)
260 PRK10929 putative mechanosensi 65.0 83 0.0018 37.5 12.6 66 248-313 260-325 (1109)
261 PF01166 TSC22: TSC-22/dip/bun 64.9 11 0.00024 30.1 4.0 21 240-260 22-42 (59)
262 PF09325 Vps5: Vps5 C terminal 64.9 68 0.0015 29.7 9.9 64 222-288 132-202 (236)
263 PF12709 Kinetocho_Slk19: Cent 64.8 32 0.00068 29.4 6.9 49 239-287 27-76 (87)
264 PF08826 DMPK_coil: DMPK coile 64.5 55 0.0012 26.1 7.8 29 241-269 27-55 (61)
265 KOG4343 bZIP transcription fac 64.5 19 0.00041 39.7 6.8 32 257-288 306-337 (655)
266 PF05377 FlaC_arch: Flagella a 64.3 34 0.00075 26.9 6.5 30 240-269 8-37 (55)
267 KOG3650 Predicted coiled-coil 64.3 31 0.00067 30.5 6.9 36 251-286 68-103 (120)
268 PF14817 HAUS5: HAUS augmin-li 64.2 54 0.0012 36.7 10.5 63 236-298 97-166 (632)
269 PRK14127 cell division protein 63.5 20 0.00043 31.6 5.7 34 265-298 35-68 (109)
270 KOG0933 Structural maintenance 63.4 99 0.0021 36.7 12.5 45 250-294 819-863 (1174)
271 PF08537 NBP1: Fungal Nap bind 63.3 1.4E+02 0.003 31.0 12.5 26 216-241 120-145 (323)
272 PF05667 DUF812: Protein of un 63.0 36 0.00079 37.6 8.9 54 239-292 335-388 (594)
273 PF15058 Speriolin_N: Sperioli 63.0 25 0.00054 34.1 6.7 34 263-296 8-41 (200)
274 KOG0995 Centromere-associated 62.9 51 0.0011 36.5 9.8 43 239-281 280-322 (581)
275 KOG0946 ER-Golgi vesicle-tethe 62.5 71 0.0015 37.0 11.0 59 226-284 658-716 (970)
276 KOG0999 Microtubule-associated 62.5 67 0.0015 35.9 10.5 75 214-288 113-191 (772)
277 PF06428 Sec2p: GDP/GTP exchan 62.5 44 0.00096 28.9 7.6 59 239-297 8-67 (100)
278 KOG0946 ER-Golgi vesicle-tethe 62.4 59 0.0013 37.6 10.4 41 229-269 675-715 (970)
279 PF13851 GAS: Growth-arrest sp 62.3 1.5E+02 0.0032 28.3 12.9 32 258-289 91-122 (201)
280 TIGR00414 serS seryl-tRNA synt 62.1 43 0.00093 35.1 8.9 57 243-299 41-101 (418)
281 PF15397 DUF4618: Domain of un 62.0 1.3E+02 0.0028 30.3 11.7 77 215-292 141-225 (258)
282 PF11577 NEMO: NF-kappa-B esse 61.3 89 0.0019 25.4 8.7 56 243-298 3-62 (68)
283 TIGR02209 ftsL_broad cell divi 61.3 30 0.00065 27.6 6.0 31 236-266 28-58 (85)
284 PF04899 MbeD_MobD: MbeD/MobD 61.0 76 0.0016 25.9 8.2 47 246-292 21-67 (70)
285 PF09727 CortBP2: Cortactin-bi 60.9 1.5E+02 0.0032 28.7 11.5 75 217-293 93-181 (192)
286 PF10226 DUF2216: Uncharacteri 60.8 1.5E+02 0.0033 28.8 11.5 82 214-295 19-122 (195)
287 PF11544 Spc42p: Spindle pole 60.3 81 0.0018 26.4 8.4 48 242-289 8-55 (76)
288 KOG0980 Actin-binding protein 60.2 91 0.002 36.4 11.4 33 225-257 452-484 (980)
289 PF13815 Dzip-like_N: Iguana/D 60.1 59 0.0013 28.2 8.1 37 251-287 78-114 (118)
290 KOG0239 Kinesin (KAR3 subfamil 60.0 81 0.0018 35.5 11.0 51 241-291 243-293 (670)
291 KOG0976 Rho/Rac1-interacting s 59.7 97 0.0021 36.2 11.4 77 214-290 101-206 (1265)
292 KOG2129 Uncharacterized conser 59.3 18 0.0004 38.8 5.6 57 242-298 46-102 (552)
293 PF10212 TTKRSYEDQ: Predicted 59.2 1.1E+02 0.0024 33.7 11.4 57 240-296 421-477 (518)
294 PF01486 K-box: K-box region; 59.2 34 0.00073 28.6 6.2 27 257-283 72-98 (100)
295 KOG0161 Myosin class II heavy 58.7 1.2E+02 0.0026 38.2 12.9 55 241-295 1479-1540(1930)
296 PF06632 XRCC4: DNA double-str 58.5 73 0.0016 33.0 9.7 57 239-295 137-208 (342)
297 PF05600 DUF773: Protein of un 58.4 43 0.00093 36.2 8.3 55 239-293 432-486 (507)
298 TIGR01843 type_I_hlyD type I s 58.4 2E+02 0.0044 28.6 13.2 13 283-295 248-260 (423)
299 TIGR03495 phage_LysB phage lys 58.3 1.2E+02 0.0025 27.8 9.8 17 277-293 64-80 (135)
300 PF12808 Mto2_bdg: Micro-tubul 58.3 22 0.00047 27.6 4.5 26 241-266 24-49 (52)
301 COG3352 FlaC Putative archaeal 58.2 71 0.0015 30.0 8.5 52 239-290 79-131 (157)
302 PF03980 Nnf1: Nnf1 ; InterPr 58.1 63 0.0014 27.3 7.8 32 257-288 77-108 (109)
303 PF00261 Tropomyosin: Tropomyo 58.1 1.1E+02 0.0023 29.5 10.3 16 278-293 173-188 (237)
304 PF05911 DUF869: Plant protein 57.9 1.4E+02 0.003 34.4 12.4 29 241-269 136-164 (769)
305 PF00038 Filament: Intermediat 57.9 1.9E+02 0.0041 28.2 13.5 56 240-295 83-138 (312)
306 PF11180 DUF2968: Protein of u 57.6 1E+02 0.0022 29.8 9.8 14 86-99 25-38 (192)
307 COG2900 SlyX Uncharacterized p 57.6 93 0.002 25.8 8.2 49 239-294 8-56 (72)
308 PRK11281 hypothetical protein; 57.5 1.3E+02 0.0027 36.0 12.4 66 248-313 280-345 (1113)
309 PHA03011 hypothetical protein; 57.4 75 0.0016 28.2 8.1 52 239-290 64-115 (120)
310 KOG4360 Uncharacterized coiled 57.4 56 0.0012 36.0 8.9 44 240-283 220-263 (596)
311 TIGR02231 conserved hypothetic 57.2 1.7E+02 0.0036 31.2 12.4 43 256-298 127-169 (525)
312 PF12711 Kinesin-relat_1: Kine 57.2 52 0.0011 28.0 6.9 40 248-289 46-85 (86)
313 PRK14872 rod shape-determining 56.8 35 0.00075 35.4 7.0 19 248-266 59-77 (337)
314 PF11500 Cut12: Spindle pole b 56.8 90 0.002 29.1 9.0 54 216-269 82-135 (152)
315 COG1792 MreC Cell shape-determ 56.7 33 0.00072 34.3 6.7 30 252-281 72-104 (284)
316 KOG0249 LAR-interacting protei 56.6 1.3E+02 0.0028 34.7 11.6 42 247-288 217-258 (916)
317 PF14257 DUF4349: Domain of un 56.6 47 0.001 32.1 7.5 26 277-302 172-197 (262)
318 PF12999 PRKCSH-like: Glucosid 56.5 67 0.0014 30.6 8.3 33 232-264 139-171 (176)
319 PF12709 Kinetocho_Slk19: Cent 56.3 1.3E+02 0.0028 25.8 9.2 36 237-272 40-75 (87)
320 PTZ00454 26S protease regulato 55.9 45 0.00096 34.8 7.7 19 244-262 27-45 (398)
321 KOG0933 Structural maintenance 55.6 1.7E+02 0.0036 34.9 12.6 56 240-295 816-871 (1174)
322 COG2433 Uncharacterized conser 55.3 2E+02 0.0044 32.4 12.7 12 283-294 497-508 (652)
323 PF04728 LPP: Lipoprotein leuc 55.3 1E+02 0.0022 24.4 7.9 23 247-269 4-26 (56)
324 PF04012 PspA_IM30: PspA/IM30 55.0 1E+02 0.0023 28.8 9.4 48 247-294 99-146 (221)
325 KOG2010 Double stranded RNA bi 54.9 66 0.0014 33.7 8.5 76 214-299 123-207 (405)
326 cd07666 BAR_SNX7 The Bin/Amphi 54.9 1.2E+02 0.0026 30.0 10.1 58 221-288 152-209 (243)
327 TIGR03545 conserved hypothetic 54.9 70 0.0015 35.1 9.3 41 214-254 163-206 (555)
328 KOG4643 Uncharacterized coiled 54.9 1.6E+02 0.0034 35.1 12.2 64 217-280 372-435 (1195)
329 PRK11147 ABC transporter ATPas 54.8 62 0.0014 35.3 8.9 54 241-294 570-629 (635)
330 KOG0612 Rho-associated, coiled 54.7 1.4E+02 0.003 36.1 11.9 26 17-42 252-278 (1317)
331 PF12777 MT: Microtubule-bindi 54.7 44 0.00096 33.9 7.4 43 226-268 229-271 (344)
332 PF07558 Shugoshin_N: Shugoshi 54.7 14 0.0003 27.6 2.9 36 248-283 9-44 (46)
333 KOG0161 Myosin class II heavy 54.7 1.5E+02 0.0033 37.4 12.8 63 228-297 1487-1549(1930)
334 PRK10361 DNA recombination pro 54.6 2.3E+02 0.005 30.9 12.9 27 243-269 64-90 (475)
335 PF07200 Mod_r: Modifier of ru 54.5 1.5E+02 0.0033 26.1 11.2 73 222-296 39-111 (150)
336 PRK04778 septation ring format 54.4 1.4E+02 0.0031 32.4 11.5 63 240-302 377-439 (569)
337 PF03670 UPF0184: Uncharacteri 54.3 82 0.0018 26.8 7.6 40 240-286 34-73 (83)
338 PF13094 CENP-Q: CENP-Q, a CEN 54.3 1.2E+02 0.0026 27.3 9.3 28 241-268 43-70 (160)
339 KOG0995 Centromere-associated 54.3 95 0.0021 34.5 10.0 20 244-263 306-325 (581)
340 PF05529 Bap31: B-cell recepto 54.0 78 0.0017 29.2 8.3 9 245-253 131-139 (192)
341 KOG0483 Transcription factor H 53.9 17 0.00038 34.9 4.1 39 256-294 108-146 (198)
342 PF13815 Dzip-like_N: Iguana/D 53.8 51 0.0011 28.6 6.6 37 256-292 76-112 (118)
343 PRK10722 hypothetical protein; 53.8 86 0.0019 31.4 8.9 30 267-296 176-205 (247)
344 KOG4673 Transcription factor T 53.8 1.3E+02 0.0029 34.5 11.2 18 277-294 608-625 (961)
345 COG5570 Uncharacterized small 53.6 19 0.00041 28.4 3.5 51 239-289 5-55 (57)
346 PF08606 Prp19: Prp19/Pso4-lik 53.6 37 0.0008 28.0 5.3 32 262-293 10-41 (70)
347 PLN02320 seryl-tRNA synthetase 53.6 1.8E+02 0.004 31.8 12.0 58 239-296 93-159 (502)
348 PF00261 Tropomyosin: Tropomyo 53.5 2.1E+02 0.0046 27.4 13.6 55 240-294 170-224 (237)
349 TIGR00998 8a0101 efflux pump m 53.0 1.3E+02 0.0029 29.3 10.1 10 243-252 112-121 (334)
350 PRK14160 heat shock protein Gr 52.9 78 0.0017 30.8 8.3 43 241-283 56-98 (211)
351 PF10205 KLRAQ: Predicted coil 52.7 1.5E+02 0.0033 26.1 9.2 52 243-294 23-74 (102)
352 PRK05892 nucleoside diphosphat 52.5 69 0.0015 29.4 7.6 54 240-293 12-73 (158)
353 KOG4643 Uncharacterized coiled 52.4 57 0.0012 38.5 8.3 31 237-267 528-558 (1195)
354 PF12761 End3: Actin cytoskele 52.3 1.5E+02 0.0033 28.7 10.1 23 277-299 163-185 (195)
355 PF04136 Sec34: Sec34-like fam 52.1 1.3E+02 0.0029 27.5 9.3 56 241-296 23-78 (157)
356 cd07591 BAR_Rvs161p The Bin/Am 52.0 73 0.0016 30.7 8.0 56 230-288 114-176 (224)
357 TIGR03185 DNA_S_dndD DNA sulfu 51.7 96 0.0021 34.1 9.8 20 278-297 266-285 (650)
358 COG3879 Uncharacterized protei 51.5 68 0.0015 32.1 7.8 43 242-287 60-102 (247)
359 KOG0977 Nuclear envelope prote 51.4 1.9E+02 0.004 32.2 11.7 32 241-272 164-195 (546)
360 KOG0971 Microtubule-associated 51.3 1E+02 0.0022 36.4 9.9 70 227-296 398-477 (1243)
361 PRK10636 putative ABC transpor 51.2 1.1E+02 0.0024 33.6 10.1 57 238-294 562-625 (638)
362 KOG4674 Uncharacterized conser 51.1 85 0.0018 39.2 9.9 64 231-294 1235-1298(1822)
363 PF14282 FlxA: FlxA-like prote 51.1 1.2E+02 0.0025 26.1 8.3 9 244-252 31-39 (106)
364 KOG4001 Axonemal dynein light 51.0 84 0.0018 31.1 8.1 55 230-284 183-252 (259)
365 COG1382 GimC Prefoldin, chaper 50.9 57 0.0012 29.3 6.5 35 235-269 66-100 (119)
366 PF08232 Striatin: Striatin fa 50.9 1.5E+02 0.0033 26.5 9.3 7 288-294 53-59 (134)
367 COG3937 Uncharacterized conser 50.8 80 0.0017 28.0 7.3 23 275-297 84-106 (108)
368 KOG0804 Cytoplasmic Zn-finger 50.3 98 0.0021 33.6 9.2 49 222-270 368-420 (493)
369 TIGR01554 major_cap_HK97 phage 50.2 1.1E+02 0.0023 31.2 9.2 26 240-265 35-60 (378)
370 PRK11546 zraP zinc resistance 49.8 1.2E+02 0.0025 28.1 8.5 51 238-288 60-110 (143)
371 PRK11091 aerobic respiration c 49.8 3E+02 0.0066 30.2 13.2 57 240-296 104-160 (779)
372 PF05622 HOOK: HOOK protein; 49.8 5.4 0.00012 44.1 0.0 37 235-271 321-357 (713)
373 PRK03992 proteasome-activating 49.7 51 0.0011 33.9 7.0 16 277-292 32-47 (389)
374 PF08232 Striatin: Striatin fa 49.5 1.2E+02 0.0025 27.3 8.4 15 276-290 48-62 (134)
375 KOG3650 Predicted coiled-coil 49.5 71 0.0015 28.3 6.7 32 240-271 71-102 (120)
376 PF10669 Phage_Gp23: Protein g 49.4 1.9E+02 0.0041 25.7 9.3 19 277-295 99-117 (121)
377 TIGR01000 bacteriocin_acc bact 49.2 1.1E+02 0.0025 31.8 9.5 59 241-299 238-309 (457)
378 KOG0612 Rho-associated, coiled 49.2 1.8E+02 0.0039 35.2 11.7 34 246-279 501-534 (1317)
379 PF13118 DUF3972: Protein of u 49.1 71 0.0015 29.0 6.9 44 241-291 80-123 (126)
380 cd07611 BAR_Amphiphysin_I_II T 49.1 86 0.0019 30.5 8.0 56 230-288 109-171 (211)
381 PRK11546 zraP zinc resistance 49.1 1E+02 0.0022 28.5 8.0 16 247-262 90-105 (143)
382 PF11365 DUF3166: Protein of u 49.0 77 0.0017 27.5 6.8 42 242-290 4-45 (96)
383 PF10046 BLOC1_2: Biogenesis o 48.8 1.7E+02 0.0036 24.8 10.5 65 226-291 30-97 (99)
384 PF04859 DUF641: Plant protein 48.7 58 0.0013 29.5 6.3 38 243-280 91-128 (131)
385 KOG1029 Endocytic adaptor prot 48.4 1.7E+02 0.0037 34.2 11.0 16 281-296 486-501 (1118)
386 PF05082 Rop-like: Rop-like; 48.3 1.5E+02 0.0032 24.2 7.9 54 241-294 4-64 (66)
387 KOG2189 Vacuolar H+-ATPase V0 48.2 1.4E+02 0.0031 34.4 10.5 38 257-294 96-133 (829)
388 PF07047 OPA3: Optic atrophy 3 48.0 38 0.00082 30.2 5.0 38 216-259 95-132 (134)
389 COG1340 Uncharacterized archae 47.9 3.3E+02 0.0072 28.0 12.3 55 218-272 26-81 (294)
390 PHA03161 hypothetical protein; 47.9 2.2E+02 0.0048 26.7 10.0 65 226-292 43-107 (150)
391 PLN02939 transferase, transfer 47.9 1.7E+02 0.0036 34.6 11.2 31 265-295 224-254 (977)
392 PRK14474 F0F1 ATP synthase sub 47.7 2.8E+02 0.0061 27.2 12.1 45 217-261 35-79 (250)
393 PF05557 MAD: Mitotic checkpoi 47.7 50 0.0011 36.7 7.0 8 273-280 572-579 (722)
394 PRK05431 seryl-tRNA synthetase 47.6 2.2E+02 0.0049 29.9 11.4 62 238-299 27-91 (425)
395 KOG2751 Beclin-like protein [S 47.5 2.1E+02 0.0046 30.9 11.1 62 229-290 154-220 (447)
396 PF05600 DUF773: Protein of un 47.5 1.2E+02 0.0027 32.8 9.7 58 226-285 435-492 (507)
397 KOG4807 F-actin binding protei 47.2 1.1E+02 0.0025 32.9 9.0 56 235-290 389-458 (593)
398 PF01486 K-box: K-box region; 47.2 1.3E+02 0.0027 25.2 7.8 22 241-262 77-98 (100)
399 PF14645 Chibby: Chibby family 47.2 69 0.0015 28.3 6.4 22 244-265 76-97 (116)
400 PF08912 Rho_Binding: Rho Bind 47.2 93 0.002 25.6 6.7 33 244-276 1-33 (69)
401 KOG2185 Predicted RNA-processi 47.2 1.2E+02 0.0027 32.7 9.2 39 225-263 399-437 (486)
402 PRK03992 proteasome-activating 46.9 73 0.0016 32.8 7.6 36 242-277 11-46 (389)
403 PF10168 Nup88: Nuclear pore c 46.8 2.2E+02 0.0049 32.3 11.8 25 240-264 580-604 (717)
404 KOG2072 Translation initiation 46.8 2.1E+02 0.0045 33.5 11.4 87 216-302 606-705 (988)
405 PF14282 FlxA: FlxA-like prote 46.7 83 0.0018 27.0 6.8 22 239-260 19-40 (106)
406 PTZ00454 26S protease regulato 46.5 80 0.0017 33.0 7.8 13 251-263 27-39 (398)
407 TIGR00414 serS seryl-tRNA synt 46.4 2.2E+02 0.0047 30.0 11.0 61 239-299 30-94 (418)
408 TIGR00606 rad50 rad50. This fa 46.4 2.5E+02 0.0054 33.7 12.7 9 30-38 664-672 (1311)
409 PF07407 Seadorna_VP6: Seadorn 46.2 35 0.00077 35.7 5.1 32 247-280 33-64 (420)
410 PLN02678 seryl-tRNA synthetase 46.1 2.1E+02 0.0045 30.8 10.9 62 238-299 32-96 (448)
411 PF13870 DUF4201: Domain of un 46.1 2.3E+02 0.0051 25.8 13.0 27 268-294 146-172 (177)
412 COG4372 Uncharacterized protei 46.1 2.2E+02 0.0049 30.7 10.9 7 134-140 36-42 (499)
413 cd07596 BAR_SNX The Bin/Amphip 46.0 1.7E+02 0.0036 26.3 9.0 58 230-287 108-172 (218)
414 PRK10698 phage shock protein P 46.0 2.8E+02 0.0062 26.7 13.5 55 245-299 98-152 (222)
415 KOG4378 Nuclear protein COP1 [ 45.9 2.4E+02 0.0052 31.4 11.4 63 231-293 603-669 (673)
416 KOG0964 Structural maintenance 45.7 2.2E+02 0.0047 34.0 11.5 74 226-299 419-499 (1200)
417 PF03962 Mnd1: Mnd1 family; I 45.6 2E+02 0.0042 27.2 9.6 9 242-250 86-94 (188)
418 PF06810 Phage_GP20: Phage min 45.5 2.1E+02 0.0045 26.3 9.5 17 275-291 52-68 (155)
419 COG1730 GIM5 Predicted prefold 45.5 1E+02 0.0022 28.4 7.5 8 262-269 117-124 (145)
420 PF05278 PEARLI-4: Arabidopsis 45.4 3.5E+02 0.0075 27.5 13.4 48 241-288 202-249 (269)
421 PF07767 Nop53: Nop53 (60S rib 45.4 1.4E+02 0.0029 30.8 9.2 37 215-251 273-309 (387)
422 TIGR00219 mreC rod shape-deter 45.3 1.1E+02 0.0023 30.6 8.2 46 237-285 64-109 (283)
423 PRK11281 hypothetical protein; 45.1 2.4E+02 0.0052 33.8 12.1 47 218-264 160-217 (1113)
424 PF10241 KxDL: Uncharacterized 45.1 1.8E+02 0.0039 24.2 10.9 61 239-299 22-82 (88)
425 PF06698 DUF1192: Protein of u 45.0 73 0.0016 25.3 5.6 24 241-264 23-46 (59)
426 PF03245 Phage_lysis: Bacterio 44.8 1.9E+02 0.0042 25.5 8.9 25 266-290 41-65 (125)
427 COG4372 Uncharacterized protei 44.6 4.2E+02 0.0091 28.7 12.6 16 241-256 146-161 (499)
428 PF10883 DUF2681: Protein of u 44.4 79 0.0017 26.9 6.1 12 274-285 53-64 (87)
429 PF15619 Lebercilin: Ciliary p 44.3 2.9E+02 0.0063 26.3 11.2 31 229-259 8-39 (194)
430 KOG3433 Protein involved in me 44.3 2.3E+02 0.0049 27.7 9.8 39 227-265 104-142 (203)
431 PF10359 Fmp27_WPPW: RNA pol I 44.3 72 0.0016 34.0 7.3 48 241-288 172-221 (475)
432 PRK10920 putative uroporphyrin 44.2 2.1E+02 0.0045 30.3 10.4 46 241-286 94-141 (390)
433 PRK14154 heat shock protein Gr 44.1 1.7E+02 0.0036 28.5 9.1 23 241-263 68-90 (208)
434 PF04375 HemX: HemX; InterPro 44.1 1.5E+02 0.0032 30.6 9.3 44 243-286 90-135 (372)
435 PF09403 FadA: Adhesion protei 44.0 2.4E+02 0.0052 25.5 9.4 60 220-281 35-103 (126)
436 PF06216 RTBV_P46: Rice tungro 44.0 1.7E+02 0.0037 30.0 9.3 52 239-290 64-115 (389)
437 PF11853 DUF3373: Protein of u 44.0 19 0.00041 39.1 2.9 14 343-356 117-130 (489)
438 PF15556 Zwint: ZW10 interacto 44.0 3.4E+02 0.0074 27.0 12.8 70 229-298 117-186 (252)
439 KOG4360 Uncharacterized coiled 43.9 1.4E+02 0.0029 33.2 9.2 58 236-293 230-287 (596)
440 PTZ00464 SNF-7-like protein; P 43.9 2.4E+02 0.0052 27.3 10.1 31 241-272 64-94 (211)
441 PF09486 HrpB7: Bacterial type 43.7 2E+02 0.0043 26.9 9.2 26 266-291 85-110 (158)
442 KOG0249 LAR-interacting protei 43.6 1.1E+02 0.0024 35.2 8.7 73 222-295 169-258 (916)
443 PF07111 HCR: Alpha helical co 43.5 3.8E+02 0.0083 30.8 12.7 51 232-282 507-564 (739)
444 PF10481 CENP-F_N: Cenp-F N-te 43.5 1.2E+02 0.0026 31.2 8.2 86 214-299 14-106 (307)
445 PF11068 YlqD: YlqD protein; 43.5 2.5E+02 0.0054 25.4 9.8 24 273-296 66-89 (131)
446 PRK15396 murein lipoprotein; P 43.3 1.7E+02 0.0037 24.4 7.8 31 240-270 26-56 (78)
447 PF03961 DUF342: Protein of un 43.3 2E+02 0.0044 30.2 10.3 60 240-299 342-407 (451)
448 TIGR02680 conserved hypothetic 43.1 3.1E+02 0.0066 33.3 12.8 37 229-265 872-908 (1353)
449 PF15188 CCDC-167: Coiled-coil 43.0 1.3E+02 0.0028 25.6 7.1 27 251-277 41-67 (85)
450 PF13166 AAA_13: AAA domain 43.0 3.7E+02 0.008 29.4 12.5 59 241-299 405-463 (712)
451 KOG4807 F-actin binding protei 42.8 1.4E+02 0.0029 32.4 8.8 54 237-290 416-479 (593)
452 KOG1265 Phospholipase C [Lipid 42.8 3.9E+02 0.0085 31.8 12.8 70 216-285 1026-1100(1189)
453 COG2900 SlyX Uncharacterized p 42.6 1.9E+02 0.004 24.1 7.8 46 242-294 4-49 (72)
454 PF06210 DUF1003: Protein of u 42.4 1.3E+02 0.0029 26.3 7.4 49 223-276 55-103 (108)
455 KOG0239 Kinesin (KAR3 subfamil 42.2 2.5E+02 0.0055 31.7 11.3 10 304-313 320-329 (670)
456 PF13942 Lipoprotein_20: YfhG 42.2 1E+02 0.0022 29.6 7.0 32 265-296 128-159 (179)
457 PF15070 GOLGA2L5: Putative go 42.1 4.3E+02 0.0093 29.6 12.9 28 252-279 86-113 (617)
458 PF06008 Laminin_I: Laminin Do 42.1 2.1E+02 0.0046 27.7 9.6 61 238-298 44-104 (264)
459 PF04568 IATP: Mitochondrial A 41.8 1.5E+02 0.0033 25.8 7.6 44 223-266 53-96 (100)
460 TIGR02971 heterocyst_DevB ABC 41.8 3.3E+02 0.0072 26.6 11.0 30 275-304 180-209 (327)
461 PRK14011 prefoldin subunit alp 41.7 1.4E+02 0.0031 27.2 7.8 13 277-289 123-135 (144)
462 TIGR02977 phageshock_pspA phag 41.7 2.5E+02 0.0054 26.7 9.8 12 258-269 111-122 (219)
463 PF12999 PRKCSH-like: Glucosid 41.7 2E+02 0.0043 27.5 8.9 14 278-291 157-170 (176)
464 PF13805 Pil1: Eisosome compon 41.6 2.5E+02 0.0055 28.5 10.1 54 216-269 142-195 (271)
465 PF11382 DUF3186: Protein of u 41.5 53 0.0012 33.1 5.5 27 240-266 33-59 (308)
466 KOG2264 Exostosin EXT1L [Signa 41.4 2.8E+02 0.006 31.5 11.1 46 243-288 104-149 (907)
467 TIGR00606 rad50 rad50. This fa 41.4 3.2E+02 0.007 32.8 12.6 35 242-276 891-925 (1311)
468 TIGR03689 pup_AAA proteasome A 41.3 55 0.0012 35.6 5.9 29 241-269 3-31 (512)
469 PF10359 Fmp27_WPPW: RNA pol I 41.0 98 0.0021 33.0 7.6 58 242-299 166-225 (475)
470 KOG0495 HAT repeat protein [RN 40.9 66 0.0014 36.8 6.4 66 191-275 88-153 (913)
471 PF13870 DUF4201: Domain of un 40.6 2.9E+02 0.0062 25.2 9.8 61 239-299 56-116 (177)
472 cd07588 BAR_Amphiphysin The Bi 40.6 93 0.002 30.0 6.8 50 234-286 113-169 (211)
473 PF07334 IFP_35_N: Interferon- 40.5 50 0.0011 27.6 4.2 27 269-295 2-28 (76)
474 PRK09841 cryptic autophosphory 40.4 1.6E+02 0.0034 33.0 9.4 73 226-298 254-328 (726)
475 TIGR02132 phaR_Bmeg polyhydrox 40.3 1.9E+02 0.0042 27.9 8.6 65 239-303 79-143 (189)
476 PF09766 FimP: Fms-interacting 40.3 1.3E+02 0.0028 31.0 8.2 50 234-283 103-152 (355)
477 COG1792 MreC Cell shape-determ 40.3 56 0.0012 32.7 5.4 47 246-296 66-112 (284)
478 PF06424 PRP1_N: PRP1 splicing 40.1 19 0.00042 32.7 2.0 46 230-275 74-119 (133)
479 PF14303 NAM-associated: No ap 40.1 2.5E+02 0.0055 24.4 9.8 102 184-286 33-139 (154)
480 KOG4001 Axonemal dynein light 40.1 2E+02 0.0042 28.7 8.8 58 228-285 170-231 (259)
481 TIGR03007 pepcterm_ChnLen poly 39.9 4.3E+02 0.0093 27.6 12.1 84 211-294 271-382 (498)
482 PRK09174 F0F1 ATP synthase sub 39.9 3.4E+02 0.0074 25.9 12.7 78 217-299 83-160 (204)
483 PRK14143 heat shock protein Gr 39.5 1.2E+02 0.0025 30.1 7.4 49 243-291 64-112 (238)
484 PF07989 Microtub_assoc: Micro 39.4 2.1E+02 0.0046 23.4 9.0 60 239-298 7-74 (75)
485 PF10883 DUF2681: Protein of u 39.3 1.8E+02 0.004 24.8 7.5 46 240-285 17-64 (87)
486 KOG0971 Microtubule-associated 39.2 3.6E+02 0.0078 32.2 11.9 75 217-291 282-356 (1243)
487 PF07246 Phlebovirus_NSM: Phle 39.1 2.5E+02 0.0053 28.5 9.6 78 214-299 151-234 (264)
488 KOG1318 Helix loop helix trans 39.0 62 0.0013 34.5 5.7 65 232-296 283-360 (411)
489 TIGR02132 phaR_Bmeg polyhydrox 38.9 2.2E+02 0.0048 27.5 8.8 60 238-297 71-130 (189)
490 PF14523 Syntaxin_2: Syntaxin- 38.6 2E+02 0.0044 23.4 7.7 51 243-293 30-83 (102)
491 PF14723 SSFA2_C: Sperm-specif 38.3 1.8E+02 0.0038 28.0 8.0 48 228-275 108-174 (179)
492 PRK14872 rod shape-determining 38.2 89 0.0019 32.5 6.6 41 239-283 57-97 (337)
493 KOG0996 Structural maintenance 38.2 3.6E+02 0.0078 32.8 11.9 81 214-294 517-597 (1293)
494 KOG0978 E3 ubiquitin ligase in 38.2 1.9E+02 0.0042 32.9 9.6 63 225-287 559-621 (698)
495 cd07614 BAR_Endophilin_A2 The 38.2 3.9E+02 0.0084 26.2 10.6 86 213-298 126-214 (223)
496 PRK00409 recombination and DNA 37.9 2.3E+02 0.005 32.4 10.3 65 231-295 505-569 (782)
497 TIGR01069 mutS2 MutS2 family p 37.8 2.5E+02 0.0054 32.1 10.5 65 231-295 500-564 (771)
498 cd07615 BAR_Endophilin_A3 The 37.7 4.1E+02 0.0088 26.1 11.0 86 213-298 126-214 (223)
499 KOG1850 Myosin-like coiled-coi 37.7 2.2E+02 0.0049 29.9 9.2 61 238-298 249-309 (391)
500 cd07667 BAR_SNX30 The Bin/Amph 37.5 2.9E+02 0.0062 27.5 9.7 59 232-294 153-211 (240)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.35 E-value=5.2e-12 Score=97.92 Aligned_cols=62 Identities=42% Similarity=0.549 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN 276 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN 276 (401)
.++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999987766655554443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.32 E-value=9.8e-12 Score=96.22 Aligned_cols=62 Identities=40% Similarity=0.539 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN 276 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN 276 (401)
.+.|+.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|...+..|..+|
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999988888877777666
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.30 E-value=3.4e-11 Score=115.90 Aligned_cols=84 Identities=27% Similarity=0.346 Sum_probs=78.5
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 213 HPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 213 ~~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
-..|+|-+||||+||.+|+-+|.|||++++++|.+|..|..||+.|..+...|+.+.+.|.++|.+|..+++.|++.+.-
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HHhH
Q 015739 293 AEDV 296 (401)
Q Consensus 293 aE~l 296 (401)
..+.
T Consensus 144 ~~~~ 147 (292)
T KOG4005|consen 144 LKQQ 147 (292)
T ss_pred hHHH
Confidence 5544
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.16 E-value=6.3e-11 Score=123.85 Aligned_cols=70 Identities=39% Similarity=0.418 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.+--||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..+..||.+||---
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps 346 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS 346 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence 7788999999999999999999999999999999999999999999999999999999999999998643
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.09 E-value=1.1e-10 Score=120.61 Aligned_cols=75 Identities=32% Similarity=0.442 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+...||.||||+|++||+.||+|||+|++.||.+|.....||++|.+++. .++.+|+.|-+++..|++.|.+.
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence 56779999999999999999999999999999999999999999998876 56788999999999999888655
Q ss_pred Hh
Q 015739 294 ED 295 (401)
Q Consensus 294 E~ 295 (401)
-.
T Consensus 320 an 321 (472)
T KOG0709|consen 320 AN 321 (472)
T ss_pred cc
Confidence 43
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.05 E-value=3.3e-10 Score=111.65 Aligned_cols=57 Identities=30% Similarity=0.428 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
+...||+-|++||||+||.||+|||+|+++||.+|..|+.+|..|-.+|..|++-|-
T Consensus 287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999999999999999999999988776553
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=2.4e-09 Score=80.83 Aligned_cols=51 Identities=43% Similarity=0.602 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888 9999999999999999999999999999999999888877654
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.33 E-value=2e-06 Score=84.10 Aligned_cols=60 Identities=38% Similarity=0.485 Sum_probs=51.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.|-.|.+++||++|.+||+||.+||..||.+|..|+.+|..|...+. .|+.++.+++++|
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~--------------~l~~~v~e~k~~V 264 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELS--------------KLKEQVAELKQKV 264 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH--------------HHHHHHHHHHHHH
Confidence 34445589999999999999999999999999999999999987774 5777888888877
No 9
>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes. They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.
Probab=98.12 E-value=3.8e-06 Score=73.18 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhHhhhccccccccccccccCCCC-----C-CC---CcccccccCCCCCCCccccccccCCCCcccccC--
Q 015739 285 ALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPV-----L-QP---INSIITSHNNNNNNNNIGRHQLANVSPTLTVPG-- 353 (401)
Q Consensus 285 ~Lrakvk~aE~lv~~~~~t~~~n~l~~~~~s~~-----~-~~---~n~~~s~~~~~~~~~n~~~~~~~~~s~~~~~~g-- 353 (401)
+||+||||+||+|+|. ++++.+++..+..+ . .+ .+...+.. .+.+.+|. .+....++.+++++
T Consensus 1 TLRAKVKMAEe~VkRv---Tg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~P-iq~~~~~~--~~~~~~~~~i~~~~~~ 74 (115)
T PF12498_consen 1 TLRAKVKMAEETVKRV---TGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVP-IQDNSNNY--FHQPNPNPTISVHGNN 74 (115)
T ss_pred ChhHHHHHHHHHHHHH---hccCccccccccCCCCCCCCCCCcccccccccCC-ccCCchhh--ccCCCCCCCcCCCCcc
Confidence 4899999999999993 35666655432111 1 00 11111110 11222344 66788888888877
Q ss_pred CCCCccccccCCCCCCccccCCCCCc-ccCCccccccccccc
Q 015739 354 NGASFSAISSTSGHRSSLGVGLANPD-IHNSNNTAVNDALSC 394 (401)
Q Consensus 354 ~~a~~~~~~~~~~~ns~~~~~~~~~~-~~~~~~~~~~~~~~~ 394 (401)
....++++ ..+.+... ..+|.... |+.+.+|+...+.+|
T Consensus 75 ~~~~~~~~-~~~~~~~~-t~smqrvaslEhlQkri~~g~~~~ 114 (115)
T PF12498_consen 75 DNPEPGGA-FVGGKMGR-TASMQRVASLEHLQKRIRGGPTSS 114 (115)
T ss_pred cccccccc-cccccccC-CccCccchhHHHHHHHhcCCCCCC
Confidence 44556666 56666554 33455544 777778887777666
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.10 E-value=5e-08 Score=80.94 Aligned_cols=56 Identities=34% Similarity=0.488 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
..+.|..||.++||.+|++||.||..++.+||.++..|+.+...|..++..+.+.+
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999988887777776666554443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.55 E-value=0.00052 Score=68.39 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=44.9
Q ss_pred hhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRR-MVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 215 ~e~KR~RR-~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.++|++|| ++.|..+|.|.|+||++..+.|+.++..|+.+|.+|+.++..+.+++
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544 56666779999999999999999999999999999999987665544
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.48 E-value=0.0007 Score=60.70 Aligned_cols=66 Identities=26% Similarity=0.389 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.-.|..||-|+||=.|+-||-|+..+-.+||.+-..|..|...|+ .||..++.++..++.|.+.+.
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~--------------~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK--------------EENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 455777899999999999999999988888877666655554444 456667777777776665443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.06 E-value=0.00099 Score=71.91 Aligned_cols=65 Identities=31% Similarity=0.402 Sum_probs=52.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 219 RIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 219 R~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
-.||+=|||.+|+++|+||..-|..||..|..|+.|-++|.++-..+... =.++|.++..|-++|
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~-------L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST-------LGVMKQQLSELYQEV 555 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999887765543333 356777777776665
No 14
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.91 E-value=0.0039 Score=61.24 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=37.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
|+-+|=+++||||.+++....++..+|..|+.||..|+.++..
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445889999999999999999999999999999888877743
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.79 E-value=0.091 Score=42.21 Aligned_cols=56 Identities=27% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+..||.+|++|-.....|+.+...|.++...+..|++.|+.+.+.-+.+| |.|+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~R 57 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 56788888888888888888888888888888888888888888877765 455554
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.70 E-value=0.16 Score=41.34 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+.++.||.+|.++-.....|..++..|+++...+..+|..|+.+.+.|++....
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888777777777777777777666667777777766666654443
No 17
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.57 E-value=0.11 Score=42.38 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYK--------EANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~--------~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
|.+.|.+++.|+.||=.|+-++-.|.+++. .+..+|-.||.+++.|+..++-...++..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999888876 45889999999999999999888777654
No 18
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.45 E-value=0.044 Score=40.86 Aligned_cols=42 Identities=19% Similarity=0.437 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+|+.+...|+.....|...+..|..||..|++++..|..+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777778888888888888888899999999998887764
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.35 E-value=0.11 Score=45.06 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|=.++..|+.....|..++..|+.+...+..||..|+.+.+.||.++...+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555666666666667777777777777777665554
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.97 E-value=0.13 Score=44.67 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..+.+||.++..|-.+...|+.++..|.++...|..||..||..+..+.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999876
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.95 E-value=0.26 Score=47.05 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
++..+|+.+++.+..+..+|..++..|++++..+..+++.|++++..++..+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555566666666666666665554
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.85 E-value=0.14 Score=44.81 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
|=.+|..|+.....|..++..|+++...+..||..|+.+-+.||.++..
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555556666666666666666665543
No 23
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.85 E-value=0.065 Score=56.94 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
..+++||+|++.|+.|.+.|.++...+++++..++.||+.|+.+++.+.++
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 357899999999999999999999999999999999999999999766554
No 24
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=0.21 Score=41.13 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
-+.-|..+|+.|+.+|..|..+...+++....|..||..||.+-...+.+++.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999998887776653
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.61 E-value=0.23 Score=43.53 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..+..||.++..|-.+-..|+.++..+.++...|..||..||..+..+.+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999999999999999999999999999844
No 26
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.57 E-value=0.96 Score=42.11 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
....++++.+...+..-+.-.......|.+++.-++.|+.|...|.-++..+.+++..+..||+.|-.+.-.. +-+.|
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~--k~~eA 189 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR--KAQEA 189 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3455666677777777777777777889999999999999999999999999999999999999998876543 44445
Q ss_pred HhH
Q 015739 294 EDV 296 (401)
Q Consensus 294 E~l 296 (401)
+.|
T Consensus 190 e~m 192 (194)
T PF08614_consen 190 ERM 192 (194)
T ss_dssp HH-
T ss_pred HHh
Confidence 544
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.45 E-value=0.32 Score=45.33 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
....++.||..|..++..|++++..|..||..|+.++..++...+++=.++.+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888887777666655554
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.40 E-value=0.77 Score=43.95 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
+.+.+++.++..|+.+|++|..++..++.+...+..+|..++.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555544
No 29
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.17 E-value=0.52 Score=38.03 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+.+++-|..++...+.+|..|..+-.....++..+-.+|..||.+++.|+.+++-
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888899999999999887653
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.14 E-value=0.47 Score=38.18 Aligned_cols=56 Identities=27% Similarity=0.280 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+.++.|=..+.+|+.||..|+.++..+...-..+...|..-+.+|+.|=.+++..|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45788888999999999999999999999999999999999999999988887665
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.78 E-value=0.76 Score=37.40 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+..+=..+..|+.|+..|+.+...+.+....|..+|..|+.+......++..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777777777788888888888888887777653
No 32
>PRK11637 AmiB activator; Provisional
Probab=93.32 E-value=1.7 Score=44.90 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 232 RSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.....-+..+..|+.++..++.+...+..++..+++++..+..+=..|+.++..++..+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556666666666666666666666666665555555555555555554444
No 33
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.29 E-value=0.63 Score=38.88 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+.=|..+|+.|+.+|..|..++..+......|..+|..||.+-...+.++.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777788888888888877777664
No 34
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.05 E-value=0.5 Score=41.66 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+=.+|..|+...-.|.+++..+++++..+..||..|+-+.+.||.++..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3446666666666777888888888888899999999999999888765
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.89 E-value=3.3 Score=36.79 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
++..|=..-|+..-....++..-+..|+..++.|+.+++.+..++..++.+...+..+.+.+...+..++..++
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777777777777777776666666655555555555444444444433
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.59 E-value=2.3 Score=46.29 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=60.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
|....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+...+++++..++.-+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666777777777777888888888888888888888888888888888888888888887777777766544
Q ss_pred h
Q 015739 298 S 298 (401)
Q Consensus 298 ~ 298 (401)
.
T Consensus 230 ~ 230 (546)
T PF07888_consen 230 K 230 (546)
T ss_pred H
Confidence 3
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.50 E-value=1.8 Score=38.44 Aligned_cols=80 Identities=19% Similarity=0.371 Sum_probs=39.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 220 IRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 220 ~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+-.+|.-|.--...|.-=...+..|+.....|+..+..|..++..+++++..+..+-+.|+.++..+..+++...+-+.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444444444444444444444455555555555555555555555555555555555555555544444333
No 38
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.73 E-value=4.4 Score=38.42 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA---------------NTNNRV 278 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l---------------~~ENr~ 278 (401)
..+...+++.+.+-+.-+.+=..-+.++..++.++..|+-|++.|..++..+.+....| .-.|-.
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l 147 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL 147 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888887777777777778888888888888777777777665555444 234556
Q ss_pred HHHHHHHHHHHHHHHHhHhh
Q 015739 279 LKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 279 LKaqve~Lrakvk~aE~lv~ 298 (401)
|..++..|...+...+..+.
T Consensus 148 LEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655554433
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.55 E-value=6.1 Score=36.03 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
....+.-++.+++.++.++..++.+..+-..|.+.+.+.+++...+..+-..++.+.+.|.++++..+++..+
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444556666666666666666666666665566666666666666667777777777776666665543
No 40
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=91.48 E-value=5.9 Score=33.28 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+.-.+|+.+.+.+=+++-..|.-+.....+|+.+|+.|..+...|..+|.....++..++.-|+.+..++...-..+
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888999999999888888888889999999999999999999999999999999999998888777655544
No 41
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.45 E-value=0.33 Score=45.30 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
|+++|.++.+--.+|.-|..+| ++...|..+++.||.++..|++.+...+.+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988 456778889999999999998888554443
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.36 E-value=5.5 Score=37.91 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 015739 279 LKSDVEALRAKVR 291 (401)
Q Consensus 279 LKaqve~Lrakvk 291 (401)
++.++..++.++.
T Consensus 124 ~~~~~~~~~~~l~ 136 (302)
T PF10186_consen 124 LQNELEERKQRLS 136 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 43
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=90.99 E-value=0.01 Score=61.05 Aligned_cols=51 Identities=33% Similarity=0.367 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 015739 213 HPIDLKRIRRMVSNRESARR---SRKRKQAHMQELELQVERLK-GENATLYKQFT 263 (401)
Q Consensus 213 ~~~e~KR~RR~lsNRESARR---SR~RKk~~L~eLE~qV~~Le-~EN~~L~~qL~ 263 (401)
.+.+.|+.+|+++|+.+|.+ +|.||+.+...|+.+|+.|+ .++..|..++.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is 203 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS 203 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence 37899999999999999999 99999999999999999999 77766555443
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.84 E-value=3.8 Score=43.40 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=51.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
|+++-+.++=+.-.+.....+.....|+.++..++.+...+..++.........+..+...+...++.|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444444444455556666778888888888888888888888777777777777777777777776555
No 45
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.72 E-value=5.8 Score=37.58 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERL-------KGENATLYKQFTDAAQQYKEA-------NTNNRVLKS 281 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~L-------e~EN~~L~~qL~~L~qq~~~l-------~~ENr~LKa 281 (401)
+.+-.+.+|....+-+-.+.+++.++..||.++..- +.+...|..++..++++...+ ..|...|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888888888877755 444444444444444443323 334444555
Q ss_pred HHHHHHHHHHHHH
Q 015739 282 DVEALRAKVRLAE 294 (401)
Q Consensus 282 qve~Lrakvk~aE 294 (401)
+++.|.+.+..++
T Consensus 167 ~~~~l~~~~~~~e 179 (190)
T PF05266_consen 167 EAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444444
No 46
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.21 E-value=2.1 Score=35.78 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
++|..++..|+..-..|..++..++..+..|..||+.|..=|..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888778888888888888888888888888877777
No 47
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.83 E-value=1.7 Score=34.59 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
.++|.+||.++..++.-...|...+...++++..|..+-+.|+.++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998888888888877666665444444444433333
No 48
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=89.76 E-value=4.9 Score=32.74 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+..||.--+.....-......+..++..+.....+|..|++++..|.++|..+...+.+
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444434444555566777777888888888899999999999999999988777655
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.64 E-value=4.8 Score=45.00 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
+..++.+|+.|...|+.+|...++++..++.|.+.|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666665555544443
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.53 E-value=5 Score=40.01 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHhHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARR--SRKRKQA-HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARR--SR~RKk~-~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..+.||+|-++.---+--| .|+-+-+ .+.+|+.+-+.|+.||..|+.+...|--+.+++..+=..|++++..|.++.
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 5677888866553322222 2333333 478999999999999999999999998888999988889999999988776
Q ss_pred HHHH
Q 015739 291 RLAE 294 (401)
Q Consensus 291 k~aE 294 (401)
++-.
T Consensus 149 ~~~~ 152 (292)
T KOG4005|consen 149 QHNT 152 (292)
T ss_pred HHhh
Confidence 6544
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.36 E-value=6.1 Score=43.63 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=49.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHhH-
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVERLKG------------------------ENATLYKQFTDAAQQYKEANTNNR- 277 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~------------------------EN~~L~~qL~~L~qq~~~l~~ENr- 277 (401)
.++|.+.--+--..++.+|.+||.++..++. +|..|+.+|..++..|..+.++|.
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~e 185 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENME 185 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445554444444677788888876665543 467889999999999999999984
Q ss_pred -------------HHHHHHHHHHHHHHHHHhHh
Q 015739 278 -------------VLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 278 -------------~LKaqve~Lrakvk~aE~lv 297 (401)
.|..++..|+.++......|
T Consensus 186 lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 186 LTSALQSEQHVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444443
No 52
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.11 E-value=1.6 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+|.+....|+..|..|..+|..|+.+.+.|+++|..+...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788899999999999999999999999988766543
No 53
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.09 E-value=2.3 Score=41.97 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+|.+..+.....++.....=+.+..++.++...|+.||..||.+|+.|++.+....+++..
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444556667777788888888888888888887766665444
No 54
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.90 E-value=2.1 Score=44.41 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
-=.|-+.+...||.-|.+++.||..|..+|..+.+++.+.+.|++.|..++.+-
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 445677788889999999999999999999999999999999999886665443
No 55
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.88 E-value=3.9 Score=43.92 Aligned_cols=53 Identities=26% Similarity=0.332 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEAN-TNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~-~ENr~LKaqve~Lrakvk~a 293 (401)
+..|+.+-+.|+.||++|+++...+.+++.... .+..+|..+.+.|..+++.+
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 577888888888999999888887777775443 55555555555555554444
No 56
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.78 E-value=0.91 Score=45.03 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.+.+|+.||++|++++..++++.... ...|++|.++||+-+.+.+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcc
Confidence 45567788888888877664444332 2235555555555554443
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.63 E-value=6.8 Score=37.73 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
.-++.+..|+.+++.|+..|..|.+.+...++++..+..+-..+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555544444333333
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.59 E-value=3.3 Score=38.53 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 249 ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
..|+.++..|..++..+...+......|..|+.++..|+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 59
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=88.03 E-value=2.2 Score=37.77 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA--LRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~--Lrakv 290 (401)
..+.+||.++..|-.|...|++.+..+-++...|.-||..||.++.. +....
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 46889999999999999999999999999999999999999999887 54443
No 60
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.95 E-value=2.6 Score=38.17 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFT--DAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~--~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.+.+|+.++..|+.|-..|...++ +|..++..+..|+..|..+++.|
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444444442 23333444444444444444443
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.75 E-value=12 Score=36.12 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
+|..++..|+.|.+.|...+..++........+=..|+.+++.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333344433333
No 62
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.63 E-value=8.1 Score=34.07 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
-+++-+..-.|..+-|+..=...-++|+..+..|+.++..+.+++..|+.++..+
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777666677777777777777777777777776666544
No 63
>PRK11637 AmiB activator; Provisional
Probab=87.35 E-value=13 Score=38.43 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVERLKGENAT-------LYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~-------L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
+...+......+.+.+..+.+++.+...|+.+-.+ |..++.....++..+..+-..|...+.+|.++
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555565555555554444 44444444555556666666666666665543
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.98 E-value=10 Score=39.66 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
...|+.++..|+.+...+..++..+..++..+..+-..+..+.
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555554443
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.95 E-value=4.5 Score=39.70 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
-+.+|..|++.|+.|..+|+-+++.++.++..+....+.|..++..+..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999998889999988887643
No 66
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.92 E-value=7.6 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHH
Q 015739 273 NTNNRVLKSDVEALRA 288 (401)
Q Consensus 273 ~~ENr~LKaqve~Lra 288 (401)
..++.+|+.++..|+.
T Consensus 95 ~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 95 SEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666554
No 67
>PRK09039 hypothetical protein; Validated
Probab=86.63 E-value=8.5 Score=39.27 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.+...+|..|+.|.+.|+.|+..++..+..++.+.+..+.+++.|++++..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888888888999999999999999999999999999998877655
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.48 E-value=6.1 Score=39.59 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
...+.+|+..+..++.+...|..++..+..+...+..++..+++++..|..++..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555544444444444433
No 69
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.27 E-value=7.2 Score=32.71 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRV-------LKSDVEALRAKVR 291 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~-------LKaqve~Lrakvk 291 (401)
+-++.||.+|.+.-....-|..++..|+++...+..++.. |..+.+.|++...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3578899999887777777777777777777777666666 5555555554443
No 70
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.22 E-value=6 Score=37.07 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
..|+.+.+.|+.|+..|..++..|..++..+..+...++.+.+.|-.-+..+..|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555444444443
No 71
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.16 E-value=6.5 Score=39.08 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
++++..+-..|..++..|..++..++.++..+..||..|......|-
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34444444444455555555555555555666666666655444443
No 72
>PRK04406 hypothetical protein; Provisional
Probab=86.03 E-value=6.8 Score=32.09 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+++.+||.++..++.-...|...+...++++ ..|+.++..|..+++.+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLI-------TKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 3566666666666666666665555443333 56666777776666543
No 73
>PRK02119 hypothetical protein; Provisional
Probab=85.94 E-value=6.5 Score=31.95 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.+++.+||.++..++.-...|...+...++++ ..|+.++..|..+++.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 34677777777777777777766666554444 5566666666666544
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.80 E-value=26 Score=32.04 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
....|++.+-+--.-+++.+..|+.++..+..+...|..+|..+ ..|+..|-..++..+.+|.-++
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l-------~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL-------RSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556666655555555555554444433 3444444444444444444444
No 75
>PRK02119 hypothetical protein; Provisional
Probab=85.79 E-value=5 Score=32.63 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+..||.++..|+....-+...+..|+.-. .....++..|+++++.+.+-+..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v-------~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQAL-------IEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888877766666665553222 22344568888888777555444
No 76
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.79 E-value=4.6 Score=32.63 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.-.+.....|..|+.....++..+-..+..|..||..|+.+++.++.
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556777888888888888888888888888888888888887764
No 77
>PRK09039 hypothetical protein; Validated
Probab=85.71 E-value=5.2 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
....+.-|..||+.|+.+...|..+|..++++......+=..|+.+++.+
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555544444444444444444
No 78
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.31 E-value=6.4 Score=39.75 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.|+.+..++..|+.||..+..+.......+..+..|...+..+++.++.++..++.+|..
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888999999999999999999999999999999999999999999999998754
No 79
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.26 E-value=1.9 Score=32.34 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
...|++.+..|..||+.|+.++++||+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888999999999999999975
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.07 E-value=5.2 Score=40.87 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..|..++..|+.+|..|+.++...+.++..|..+|+.||.....+.+++..-|..|..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN 80 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN 80 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666655555433
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.06 E-value=12 Score=41.06 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.+|+..+..++.....+..|++.|+..+..|++++.+.-+-.
T Consensus 420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 366776777777778899999999999999999998875543
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.94 E-value=6 Score=38.01 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+|=..|+.|+.-|.+|..+...|+.....+...|..|..++..|+.+++..
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444445555555555555555555554444
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.76 E-value=22 Score=33.77 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
...+..+..++.++..|+.+.+.+++++...++++..+..++...+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555555444444443
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.29 E-value=18 Score=36.57 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
..+-+..=.+.+.+|+.+...|+.+-..+.+....++.++..+..+...|+.+++.++.++..++
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444556666666666666666666666666666666667777777776666655444
No 85
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.27 E-value=19 Score=34.21 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
.+.++...+.+||.++-.|+.+...+..+.......+..+..+-..|++++...+.+.+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888999999888888888888888999999999999999999877654
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.16 E-value=3.1 Score=35.79 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 015739 266 AQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+++...+..+|..|+.+++.|+.
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333344445555555555544
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=83.98 E-value=4.9 Score=39.56 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
++..|||.++.+++.+...|+.++. .|.++|-.|-+++..|
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3457788777777776666665553 4556666666655444
No 88
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.89 E-value=27 Score=31.11 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 015739 281 SDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 281 aqve~Lrakvk~aE~lv~ 298 (401)
.++++|+..|....+|++
T Consensus 96 E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666665544
No 89
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.81 E-value=7.5 Score=38.62 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++...++..+++.+..|+..|.++++.++.++..+...=+.|+.+...|..+++.+.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344566677777777777777777777777777776666666666666666665554
No 90
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.79 E-value=7.4 Score=37.71 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
....|+.||.+|++++..|+.+...+ +.|++|.++|++.+.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQEL----EQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 33445555555555555554443322 3455555555554443
No 91
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.76 E-value=3.7 Score=40.00 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.++.+...|.+|.+.++.+|..+..||..|+.++
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.53 E-value=8.7 Score=38.64 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.+|..|..++..+..+...+++++..++.++..+..+-..+.++...|+.+++.++..+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666555566666666666666666666666666666655555443
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.37 E-value=8.7 Score=42.27 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+.++.+.+|+.+|+.|+.+...+..++..+..++..+..+....+.+.++|.++++..+.++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~ 387 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE 387 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777777777777777777777777777777777777777777777777777665543
No 94
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=83.23 E-value=6.8 Score=33.20 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQ------QYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~q------q~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..+|..|..++..|+. +......||..|+.++..|+.-.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555443 44667889999999999987644
No 95
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.20 E-value=8.4 Score=39.09 Aligned_cols=86 Identities=15% Similarity=0.305 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.++|=.|=|+.|-+== --|..=.-+++-|..++..|+.....|.+++......+..+......|+.++..|+.+|+.+
T Consensus 88 evEekyrkAMv~naQLD-Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLD-NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788883210 01112223456667777777777777777777666677777777888999999999999999
Q ss_pred HhHhhhc
Q 015739 294 EDVVSVG 300 (401)
Q Consensus 294 E~lv~~~ 300 (401)
++++.-.
T Consensus 167 deli~kh 173 (302)
T PF09738_consen 167 DELIEKH 173 (302)
T ss_pred HHHHHHC
Confidence 9888774
No 96
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.12 E-value=8.7 Score=38.87 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.+.+.+.++...+.+-..|..++..|+.+|.....+...|+.+++....++..++.|+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 34555556666666666677777777777777778888888888888888888887743
No 97
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.00 E-value=13 Score=31.97 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 245 ELQVERLKGENATL--YKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 245 E~qV~~Le~EN~~L--~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+.++..++.+-..| +..+..|+-....+.-+=+.|.+++..+.+++.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 3333333333333333335555555555555444
No 98
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.90 E-value=5.2 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
++|..++..|+.|+..|..+|..++
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444444444443
No 99
>PF15058 Speriolin_N: Speriolin N terminus
Probab=82.76 E-value=2.2 Score=41.04 Aligned_cols=33 Identities=39% Similarity=0.355 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
+.|..|++.|-.||++|++++.. ..||.+||.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRL--------IRENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 56788899999999999988864 4577887764
No 100
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.60 E-value=8.1 Score=35.40 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKG---ENATLYKQFTDAAQQ 268 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~---EN~~L~~qL~~L~qq 268 (401)
.+.+|.+...++..|+. .|..|..++..|+.+
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAK 66 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33344444444444444 344444444444333
No 101
>PRK04325 hypothetical protein; Provisional
Probab=82.58 E-value=9.5 Score=31.04 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
++|.+||.++..++.-...|...+...++++ ..|+.++..|..+++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 3488888888888888777777776554444 45666666666666543
No 102
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.50 E-value=15 Score=37.58 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
-|+++|-....+.++.++|.....-+..-.....+-..+.+++.++..||-.|+++++....|+...|.+|.-
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vin 253 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVIN 253 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788888888899999999888777777777777778889999999999999999999999988777755443
No 103
>smart00338 BRLZ basic region leucin zipper.
Probab=82.49 E-value=5.3 Score=30.86 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+..|..+...|..+|..|+.++..|+.++..+...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777777777766655543
No 104
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.45 E-value=8.6 Score=31.14 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++|.+||.++..++.-...|...+...++++ ..|+.++..|..+++.++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 5678888888888877777777666554444 556666666666665433
No 105
>PRK00295 hypothetical protein; Provisional
Probab=82.42 E-value=11 Score=30.22 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+++.+||.++..++.-...|...+...++++ ..|+.++..|..+++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 3589999999998888888887776555444 556667777766665443
No 106
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.31 E-value=20 Score=29.17 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.+.|..|-.+-+.|....-.+...+..|+.+...+..+...|+.+++.+..++..+++
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333344444444444444444444455555554444444443
No 107
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.30 E-value=29 Score=29.24 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
.++...++..+..=..|+..+..||.++..|..|-..-..+.-.+.+....+..|++.|+..+..=+.-
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~ 74 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSEL 74 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 356666777777778888889999999999999999999999999999999999999999877654433
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.27 E-value=27 Score=29.24 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQ------AHMQELELQVERLKGENATLYKQFTDAAQQY----------KEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 226 NRESARRSR~RKk------~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~----------~~l~~ENr~LKaqve~Lrak 289 (401)
|.+..+.+-++|. ..+-+|..+...|..+-..|+.+-..+..++ ..+..+=+.|+.++..|..+
T Consensus 10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544442 2334444444444444444444444444443 44555666666666666666
Q ss_pred HHHHHhHh
Q 015739 290 VRLAEDVV 297 (401)
Q Consensus 290 vk~aE~lv 297 (401)
+..++.-+
T Consensus 90 ~~~~e~~l 97 (108)
T PF02403_consen 90 LKELEEEL 97 (108)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 109
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.26 E-value=25 Score=35.47 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+..++.++.++.+.+.+-..++.++.....++..+..+-..|...+..+..||+-
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777777777777777777777777777666653
No 110
>PF15294 Leu_zip: Leucine zipper
Probab=82.19 E-value=4.8 Score=40.57 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|..++..|+.||..|+.++..++.++..+..|+..|..++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777776666677777766666655
No 111
>PHA03162 hypothetical protein; Provisional
Probab=82.08 E-value=4.1 Score=37.13 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
-+|+.-+++|+.++.+|+-||..|++++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667799999999999999999999994
No 112
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=82.06 E-value=11 Score=31.60 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQ-VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 236 RKk~~L~eLE~q-V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
|...-++.++.+ -+.|..+...|...|..|..++..+..||..|+.+-+.|+.-+.-+
T Consensus 5 ~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 5 RNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555553 6778888889999999999999999999999999999998765433
No 113
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.02 E-value=0.27 Score=50.78 Aligned_cols=46 Identities=35% Similarity=0.458 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLY 259 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~ 259 (401)
..++++.|=.++||.+|-|+|.|||..+..|+.+...+..+|..|.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3455665558999999999999999999999999999998887776
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=18 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++.+..+...+..|..++++|.-|++.++
T Consensus 429 qe~iv~~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 429 QEWIVYLNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455566667777777777776665
No 115
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.00 E-value=18 Score=34.86 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
|..+|..|+.||..|..+..-++.++..|..++..|+.++
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 116
>PRK02793 phi X174 lysis protein; Provisional
Probab=81.94 E-value=11 Score=30.45 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+||.++..|+....-+..-+..|++-. .....++..|+++++.+.+-+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v-------~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTV-------TAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888877766666555543222 22344568888888877554443
No 117
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.81 E-value=15 Score=40.90 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
...|.+||.+-+.|..|.+++..+++++++.+.....|=..||-+++.-+.++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 35688999999999999999999999999999888888889999998865544
No 118
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=81.74 E-value=36 Score=32.84 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=62.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
-++..-.+-..|.-..-++++..|...+..-+.+-.....+-..+.++...|..|.+.++.++..|+++|..++....
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666667777777777888888888888887777777777788888899999999999999999999988875543
No 119
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.60 E-value=14 Score=33.38 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
|-..|..|..++..|+.+...|..+|..+...+
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555555444443
No 120
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.51 E-value=14 Score=31.69 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDA--AQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L--~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
++.++.|+.++......-..|..++..+ .+.++.|..+=..++-++..|+++++-.+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445556666665555555555555555 555555555555555555555555544443
No 121
>PHA03155 hypothetical protein; Provisional
Probab=81.45 E-value=9.7 Score=33.97 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
-+++|+.++..|+-||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999999854
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.44 E-value=39 Score=33.49 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
..|+.++..++.+-..|..++..+...+..+..+=..|+.++..++..+..+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444333
No 123
>PRK00846 hypothetical protein; Provisional
Probab=81.39 E-value=13 Score=31.00 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++|.+||.++...+.-...|...+...+ .+-..|+.++..|..|++..+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq-------~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADAR-------LTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777776666666666555433 334667777888877776555
No 124
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=81.37 E-value=4.7 Score=31.27 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|++.+|.|||.++..-+ |...+ .-....+.+..+..||+.|+++++.++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888887776533 21111 2234567778889999999999988753
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.22 E-value=15 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
..+|.+|..|...|..|..+|..+..++
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 126
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.99 E-value=14 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
|..-+++|..++.+|+-||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566899999999999999999999875
No 127
>PRK04325 hypothetical protein; Provisional
Probab=80.97 E-value=11 Score=30.66 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
++..++.++..|+....-+...+..|..-. .....++..|+++++++.+-+..
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv-------~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATV-------ARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888776666665555443222 22334568888888777544433
No 128
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.86 E-value=22 Score=33.78 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.+.+..|+.++..++.....|..++..|++++..+...-..|++++...+++.++.+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~ 154 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRR 154 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777776666667766666666555444
No 129
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.49 E-value=9.5 Score=35.15 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDA-AQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L-~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.+||...-.++....+|+.++..+ +.++..+..++..|+.+++.|++++
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443 3445555666666666666665554
No 130
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.45 E-value=12 Score=35.27 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+|++=..+.+.|..-|.-|+.++.........|..+...|..+...|+.++...|.....
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566777777777888888777777777888888888888888888777765444
No 131
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.34 E-value=11 Score=30.00 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.||.++..|+....-+...+..|++....-..+=..|+.++..|..|++..+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999988888888888877776666666667777777766665443
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.30 E-value=22 Score=35.39 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccc
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSVGSL 302 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~~~~ 302 (401)
..++.++..++.++..++..+....+
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence 34555666666666666554444433
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.13 E-value=20 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENA 256 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~ 256 (401)
+|.+||.++..++.+..
T Consensus 67 ~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 67 QLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 134
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=80.11 E-value=15 Score=40.08 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.+--|++|+... -..+.+|-.+.+.+.+..+..-+.+-..|--+|...+.+......+|+.++.+.+.|+.+.++.
T Consensus 27 e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 27 EDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555566665543 2334445555566667777777888888889999999999999999999999999999999999
Q ss_pred HhHhhhcc
Q 015739 294 EDVVSVGS 301 (401)
Q Consensus 294 E~lv~~~~ 301 (401)
.+|++-+-
T Consensus 104 ~d~l~~~~ 111 (604)
T KOG3564|consen 104 KDMLKCDI 111 (604)
T ss_pred HHHHhccc
Confidence 99987653
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.05 E-value=46 Score=33.72 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHhHhhhcccccccc
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK-------SDVEALRAKVRLAEDVVSVGSLTCGLN 307 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK-------aqve~Lrakvk~aE~lv~~~~~t~~~n 307 (401)
.+..+.+.+||.+.+.|..|...|..+...+.++-...-.+...++ .+...|..++....+.+.+-.-+-++|
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n 139 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 3444555566665555555555555555555444333333333333 444455555444444444433334455
Q ss_pred ccccc
Q 015739 308 QLLQS 312 (401)
Q Consensus 308 ~l~~~ 312 (401)
..|++
T Consensus 140 ~~F~I 144 (314)
T PF04111_consen 140 DTFHI 144 (314)
T ss_dssp TT--E
T ss_pred ceeeE
Confidence 55543
No 136
>PRK04406 hypothetical protein; Provisional
Probab=80.03 E-value=12 Score=30.66 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
++.|+.++..|+....-+...+..|++-. .....++..|+++++++.+-+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v-------~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDAL-------SQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688888888887777666665554322 22344568888888877554443
No 137
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.96 E-value=8.9 Score=37.78 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.=+..|-+.++..|.+|..++..+.++...|..|-..||++-.+|-.|++.+...
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344556777777888888888888888888888888888888888888877644
No 138
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.93 E-value=5.8 Score=40.76 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
|+.|+.+|.+|.+|+..-+++..-|..-||+=-.+|+.|.+-|.-+|+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEa 50 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEA 50 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555555555555666666655555544
No 139
>PRK00736 hypothetical protein; Provisional
Probab=79.81 E-value=13 Score=29.84 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++|.+||.++..++.-...|...+..-++++ ..|+.++..|..+++..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4589999999999888888887776555444 556667777777665443
No 140
>PRK00295 hypothetical protein; Provisional
Probab=79.79 E-value=16 Score=29.25 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
||.++..|+....-+...+..|+... .....++..|+++++++.+-++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v-------~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVL-------VEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766665555554443222 23344568888888877655544
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.56 E-value=44 Score=29.58 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+|.-.+..+..|+..++.++.....|.++-..|......|..+|..+-.++..|+++|.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555544455444444444444455555544444444444443
No 142
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.53 E-value=7.8 Score=33.37 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.+.++++.+++.+++.|+.+|..|..++..|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455567777777777777777777665543
No 143
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.34 E-value=40 Score=31.74 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK 280 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK 280 (401)
..+|+.++..|+.++..|..++..+..++..+...+..++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~ 161 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888887777777777766655555433
No 144
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.60 E-value=21 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
|+.+.+.+..+-..|..+++....++..+..+...|+.|.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444444444444555554444444555555555555544443
No 145
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.58 E-value=26 Score=36.70 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=45.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD--------------AAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~--------------L~qq~~~l~~ENr~LKaq 282 (401)
.-|.|++.-|-|--|.-|.- +++-..+.++|+..|++|..+|.. |+.-...+..||+.|+.+
T Consensus 74 q~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666655543 333344455666666666666554 455556778999999999
Q ss_pred HHHHHHHH
Q 015739 283 VEALRAKV 290 (401)
Q Consensus 283 ve~Lrakv 290 (401)
+..|.+..
T Consensus 150 L~~l~~e~ 157 (401)
T PF06785_consen 150 LDALQQEC 157 (401)
T ss_pred HHHHHHHH
Confidence 99888776
No 146
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.38 E-value=50 Score=30.65 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.+|..|+.+|..|..++..+..+...+......|+.+...|
T Consensus 96 ~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 96 SQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443333
No 147
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.16 E-value=51 Score=29.60 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELE-------LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE-------~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+++..-+.+.+.-.+|++.++.|+ .+|..|+.+...+..++..+...+..+ +..++.++..+..
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~ 184 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHE 184 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455556667777777776666665 367777777777777777777666665 5567777776644
No 148
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.16 E-value=30 Score=37.25 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.++.|+.++++|+.||..|+..+..|.-.+..+..+-..+-.+++.|+-++.-..++
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l 354 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL 354 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345566789999999999999999999999888888888888888887666544333
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.98 E-value=18 Score=36.36 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.++++-.+++.++.++.++..++..++
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.77 E-value=30 Score=28.08 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.|.+=..+|.+|..|-..|..+--.+...+..|...+..+-.++..|..++...+.-
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788888888888888888888888888888888888888888777666543
No 151
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.69 E-value=30 Score=40.67 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 241 MQELELQVERLKGEN-ATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 241 L~eLE~qV~~Le~EN-~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
++.|+.+|..++.+- ..|..++.....++..|..|+..|
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444555444444333 333333333333333333333333
No 152
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.55 E-value=16 Score=38.12 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+.++.|....+.|+.--++|..-.+.|......|+.+-..|+.+++-|..|+++
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444443333333333333333333444444444444444444443
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.21 E-value=38 Score=33.52 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~q 261 (401)
+.+++.-.-++..+++|+.+|.+++.+...++.+
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444333333
No 154
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.93 E-value=8.2 Score=30.02 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL 262 (401)
+.+|+.+++.|+.+|..|..++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 155
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=76.86 E-value=19 Score=32.86 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
-++.+-.|.++-..|+..--...+++..++|+ +.|+.+|.+|.+||+.|++.+..
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778887777788888877665 57899999999999999876543
No 156
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.77 E-value=14 Score=41.91 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.||+..+..|..+...+..+...++..+..++..+.....++..|..+++.||.++.-++.++
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456667888889999999999999999999999999999999999999999999888777664
No 157
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.64 E-value=2.5 Score=31.63 Aligned_cols=40 Identities=35% Similarity=0.392 Sum_probs=7.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~q 261 (401)
++...||+=|+..-..... +.+||.++..|..||-.|+.+
T Consensus 4 k~~~qn~~laK~Ns~l~~k-i~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALSIK-IQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHhH-HHHHHhHHHHHHHHHHHHHHH
Confidence 3444455555444433333 555555555555555555443
No 158
>PRK10698 phage shock protein PspA; Provisional
Probab=76.62 E-value=35 Score=32.91 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
..+..|+.++...+..-..|..++..|+.++..+...-..|.++...-+++.++.+.+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777666666655544
No 159
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.53 E-value=21 Score=41.87 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=39.1
Q ss_pred HHHHhHHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKR----KQA------HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 222 R~lsNRESARRSR~R----Kk~------~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
-+|+++..|.|.+.- +.. .......++++|+.|.+.+.+++..++..|......++.|+.+.+.|..++
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 467777777775421 111 234445566666666666666666666666655555555555555544444
No 160
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.26 E-value=11 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+...+..++..++++...+..||..|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455556666666666666777777777776654
No 161
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.11 E-value=34 Score=34.92 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+||.+-++|+.+-.+|.+++..|++-+
T Consensus 259 ~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 259 GLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444433
No 162
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.97 E-value=40 Score=36.16 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=28.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
|++-|+...+.--+---+-=++++.++|..+..|+.||..|..+...
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434333333333222334567888889999999999888766543
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.90 E-value=30 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
+.+..+|+.++.+|+.++..|..++..+..+..
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777766555443
No 164
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.89 E-value=20 Score=36.72 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 254 ENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 254 EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
|...|..++.++++++..+..||..|...
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444445555555555555555544444
No 165
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=75.69 E-value=14 Score=39.03 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++|.--|+|-.+.-...|.+++.+..|...|+.++.........+..|+..||.-|..|++-.++..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 5566667777777777778888888888888888888877777777888888887777777666553
No 166
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.56 E-value=20 Score=29.98 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 015739 279 LKSDVEALRA 288 (401)
Q Consensus 279 LKaqve~Lra 288 (401)
|..++..+..
T Consensus 86 le~~~~~~e~ 95 (108)
T PF02403_consen 86 LEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=75.38 E-value=1.1e+02 Score=32.75 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERL----------------KGENATLYKQ---FTDAAQQYKEANT 274 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~L----------------e~EN~~L~~q---L~~L~qq~~~l~~ 274 (401)
..++|..||+...-+-=||.|.+=...|.+|-.-|-.. ..-+.+|++. ..++.++...|+.
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~ 304 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLES 304 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 45666667777777888898988888899887544322 1122222222 2233444455566
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 015739 275 NNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~a 293 (401)
.|++|..++++|..+...+
T Consensus 305 ~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 305 TNQELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777776655433
No 168
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.26 E-value=6.5 Score=37.41 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
-|-+|.+|..+++ -...+.++.+|+.+|..|+.+.+++.+++.
T Consensus 88 ~Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~ 130 (181)
T KOG3335|consen 88 FEYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFS 130 (181)
T ss_pred ehhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766 355566788888888888775555555444
No 169
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.24 E-value=30 Score=35.09 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 231 RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
-|+++-+--.++++|+++.+.-..|+-|..+|..-+ .+..+=..||.+...||+.++..+..
T Consensus 125 ErakRati~sleDfeqrLnqAIErnAfLESELdEke----~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555677778888887777777777776432 33444577888888888888877754
No 170
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=75.18 E-value=22 Score=28.82 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.|..+++.|+..|..|...+...+++...+...-..-.+...+|+-+++..++++.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e 57 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE 57 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47778888999999999999888888888888888888888888777766665544
No 171
>PRK00736 hypothetical protein; Provisional
Probab=75.04 E-value=24 Score=28.31 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
++.++..|+.....+..-+..|+... ..-..++..|+++|+++.+-+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v-------~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQL-------AEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766655555444442221 22333468888888777555444
No 172
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.00 E-value=64 Score=30.96 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
..|-.-...+..||..|+++|..+.+++..|...+..|..+-..|++..-..++
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~ 205 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLES 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566788888888888888888888888888888888888777666554
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.99 E-value=42 Score=34.17 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++..|..++..+..+....+.++..+++++..+...=..++.+..+++.+++.++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444433
No 174
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.92 E-value=36 Score=31.40 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.++..+..+++.+++++...+.|-..||.|.+.|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666667777777776654
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.59 E-value=14 Score=36.35 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
.+|++|+.+|..|+.+++++..++..+++
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 176
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.30 E-value=11 Score=41.74 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.+|-.||++|..|+.-|+-++...+|-...|+..+++|..++.++++++..+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999988888888888888888888887777766555
No 177
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=74.16 E-value=1.8 Score=36.88 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.||+.|...+..|..+|..|..++..|..++..+......|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 588899999999999999999888888777766666665555544
No 178
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.11 E-value=37 Score=40.03 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 224 VSNRESARRSRKRKQAHMQELELQV-ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 224 lsNRESARRSR~RKk~~L~eLE~qV-~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
..+=...+++..+....+.+++.+. ..+..+-.++..++..|+++...+..++..|+++.+.+..+
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555556666666666665 44555555555555555555555555555555544444433
No 179
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=74.11 E-value=66 Score=32.45 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQ-ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~-eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+|.|-.-|.+..+.=--++..|-|.-.- +|....++-..--.+|..++.+|+++.+++.-.=.=||+++..|-+|++.+
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Confidence 3444444555555544444444444333 344333333333344455555555555554444445555555555555444
Q ss_pred HhH
Q 015739 294 EDV 296 (401)
Q Consensus 294 E~l 296 (401)
..+
T Consensus 92 n~L 94 (277)
T PF15030_consen 92 NRL 94 (277)
T ss_pred HHH
Confidence 433
No 180
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.02 E-value=28 Score=37.63 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA--------NTNNRVLKSDVEALR 287 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l--------~~ENr~LKaqve~Lr 287 (401)
..+..+||.+.-+.-+| -.+.+.+|+++++.-+.|+....-+--.|+.+..++ -.||..+++++|.||
T Consensus 240 akehv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR 315 (575)
T KOG4403|consen 240 AKEHVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLR 315 (575)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 33444555555554433 344566666666666665444333333333333311 357778888888888
Q ss_pred HHHHHHHh
Q 015739 288 AKVRLAED 295 (401)
Q Consensus 288 akvk~aE~ 295 (401)
..|+.||.
T Consensus 316 ~~L~kAEk 323 (575)
T KOG4403|consen 316 VALEKAEK 323 (575)
T ss_pred HHHHHHHH
Confidence 88887773
No 181
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=74.02 E-value=17 Score=37.56 Aligned_cols=58 Identities=16% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+|++.|+.+++.|+.+..+|..++.... .....-+.|..+++.+..++..++.+++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666667777777777777766655433 23334456778888888888888887543
No 182
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=73.98 E-value=17 Score=36.93 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 225 SNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 225 sNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
=|.|+-+.+ -+.....|..||..|+..|+.+++++...+.++..|
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444333 233455666777777777777777776666665554
No 183
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.87 E-value=23 Score=32.80 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 249 ERLKGENATLYKQFTD 264 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~ 264 (401)
+.++.+...|..++..
T Consensus 85 d~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQ 100 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 184
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.54 E-value=31 Score=32.84 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
++..-..+...+..+...|..++..|+++++..+.
T Consensus 158 ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 158 QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334455566677777777777777777776654
No 185
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.47 E-value=18 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
..+..++..++.++..+..+|..|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666677777777777777
No 186
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.38 E-value=20 Score=36.32 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 249 ERLKGENATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
.+|+.+++.++.....+.+-+..|+.-|..|
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3333333333333333333333333333333
No 187
>PRK00846 hypothetical protein; Provisional
Probab=73.12 E-value=26 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+|+.++..|+....-...-+..|.+. =.....++..|+++++...+-++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~-------v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEA-------LADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777776655554444433221 123455677788777665544443
No 188
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=73.03 E-value=86 Score=34.71 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=42.8
Q ss_pred cCCCCChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 208 EQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 208 e~~~~~~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
|+..+++...||.--+++.-.-|...|.|||+.-.|.|.+ +.|-..+..+-. .....-...-..+|++.+. |
T Consensus 382 eqkaedema~kraallekqqrraeear~rkqqleae~e~k----reearrkaeeer---~~keee~arrefirqey~r-r 453 (708)
T KOG3654|consen 382 EQKAEDEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQK----REEARRKAEEER---APKEEEVARREFIRQEYER-R 453 (708)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHhhh---cchhhhhhHHHHHHHHHHH-H
Confidence 3433445666666667777677888888998844444443 333333322211 1111111222445555554 4
Q ss_pred HHHHHHHhH
Q 015739 288 AKVRLAEDV 296 (401)
Q Consensus 288 akvk~aE~l 296 (401)
.++++.|+|
T Consensus 454 kqlklmed~ 462 (708)
T KOG3654|consen 454 KQLKLMEDL 462 (708)
T ss_pred HHHHHHHhh
Confidence 678888887
No 189
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.83 E-value=49 Score=34.73 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 245 ELQVERLKGENATLYKQFTDAAQ---QYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 245 E~qV~~Le~EN~~L~~qL~~L~q---q~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+++.|+.+-..+.+++..+.. ....+..+-+.|++++..|.++++.+++-+..
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433211 12345566677777777777777776655444
No 190
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.80 E-value=41 Score=28.03 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
-++.||.+|++.-.-..-|.-++..|+++..
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777776644433333333333333333
No 191
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.62 E-value=40 Score=31.76 Aligned_cols=60 Identities=13% Similarity=0.256 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE-ANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~-l~~ENr~LKaqve~Lrakvk~a 293 (401)
+...+..+.+|+.+...|+.+...|..++..+.++... ...+++..+.++..|++.-+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888888887777777654 4555666666666666554443
No 192
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=72.57 E-value=4.2 Score=40.81 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+|.++|.+|+.|+.-|..|.++|+.-..-|..+...-.++|+++.+|..+++-.|+-
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 3578899999999999999999998766667666555566999999999888766543
No 193
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.47 E-value=13 Score=38.75 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLK 252 (401)
Q Consensus 240 ~L~eLE~qV~~Le 252 (401)
..++|..+|++|+
T Consensus 47 EN~~Lk~eVerLE 59 (420)
T PF07407_consen 47 ENNDLKIEVERLE 59 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555553
No 194
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.17 E-value=78 Score=28.82 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+.++..++.....+.+++.++.+.......+=..++.++..+++.....+.+
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333333344444444444433333333
No 195
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.16 E-value=32 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
..|..-+...+.+|..|..++..|++++.++..+++.||.++..++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 4566677777888888888888888888888888888888777654
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.04 E-value=23 Score=35.66 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHH-HHHHHHHHHHHHHHHHhH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANT---NNRV-LKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~---ENr~-LKaqve~Lrakvk~aE~l 296 (401)
+.+|+.++..++.+.+.+..+...+..++..+.. +++. =+.++..|++++.+++.+
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333321 1110 123455555555555544
No 197
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.84 E-value=51 Score=38.76 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+.++.++..++..|+...+.+..++..+.+.+..+..+-..++.++..++.++..++.+
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666777777777777777777777777777777766665554
No 198
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.77 E-value=5.1 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
..|+.++.+|..+...++.||..||.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555666776665
No 199
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.76 E-value=66 Score=31.46 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
..|+.+......+...|..++..+......+..+......+...|+.++..+....
T Consensus 64 ~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 64 QRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555667777777777777777777777777888888877776543
No 200
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.56 E-value=33 Score=29.50 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+.|.+++.+--.++..|.+|..++..+.++...-.. +-.++.+++.++++++.....
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777777777777666555544333 566778888888877766544
No 201
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.52 E-value=40 Score=37.09 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.+.+++..+..|+.|...++.++..+..+...|..||..|+.++..++.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444455555555555555555555555555556666666665555554
No 202
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.43 E-value=31 Score=35.46 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
.+.+|.+++..++.++.-|+.++..
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHh
Confidence 4455666777777777777776665
No 203
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=71.42 E-value=66 Score=27.66 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.+.++..+.+.+..|..|...+...++-.......+..|+.+.+..+++++.+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888889998888888888888888889999999888776543
No 204
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.37 E-value=82 Score=33.11 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.++.-.+...+-+...+..+.+|+.++..++.....+..+...++.+...+..++..+..++..|..
T Consensus 320 ~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 320 TAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 3333333333334444445555555555444444444444444444444444444444444433333
No 205
>PLN03188 kinesin-12 family protein; Provisional
Probab=71.28 E-value=12 Score=44.48 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFTD------------------------AAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~------------------------L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
++...|+.||..|+.||.+ .++++..++.||..|+++++.|.+|-.
T Consensus 1173 ker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1173 KERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666679999999876 466777889999999999999988763
No 206
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=71.23 E-value=35 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|..|.++...+...|-.|...+..|++++..+.
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666666666655444
No 207
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.20 E-value=58 Score=30.46 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.|+.++..+...-..|+..+..+..++..+..+=..|+++...-
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333344433333
No 208
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=71.14 E-value=16 Score=39.31 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTD------------------------AAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~------------------------L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
+...|+.||..|+.||.+ .+.++..+..||..|+.+++.|..|-++
T Consensus 404 Er~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~ 473 (488)
T PF06548_consen 404 ERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKM 473 (488)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455699999999876 4566777889999999999999877543
No 209
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=70.93 E-value=45 Score=31.80 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.-|+.-|+.||.+|...+.-..+....|...+........--...+.++..|+..|+.+..-+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA 126 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988888888888888777777777777788888888887777765543
No 210
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=70.81 E-value=22 Score=34.84 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 249 ERLKGENATLYKQFTDA-AQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~L-~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
-+++..-.++++++..+ ..++..+..||..||.+++.|+.++ ++++-+.
T Consensus 97 ~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l--r~ei~~~ 146 (220)
T KOG3156|consen 97 YQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL--RHEISKT 146 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 34444455666666554 6788999999999999999998875 5665443
No 211
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.47 E-value=66 Score=31.41 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.++.|+..++.++..++.++..+...|..|..++..|+.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 334444444444444444444444444444444444433
No 212
>PLN02678 seryl-tRNA synthetase
Probab=70.45 E-value=58 Score=34.84 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 244 LELQVERLKGENATLYKQFTDAA---QQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~---qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
|..+++.|+.+-..+.+++..+. +....+..+=+.|++++..|+.+++.++.-+..
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443321 122344445567777777777777766655443
No 213
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.39 E-value=36 Score=27.16 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
++...+..|-.+.++| ......|+.|..+|..|+.++.
T Consensus 19 EL~kvk~~n~~~e~kL-------qeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 19 ELTKVKSANLAFESKL-------QEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444 4556667777777777766553
No 214
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=70.30 E-value=23 Score=34.32 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.||..|++++..+..++..|..||..|+.-++.++.-..+.++|
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888998888888899999999998776665544444433
No 215
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=70.22 E-value=78 Score=34.88 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRES------ARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 214 ~~e~KR~RR~lsNRES------ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
....|++|..+-+|.- -+.. ..=.++++.++..|+.|......+..++.....+...+..+=..|+.+.+.++
T Consensus 15 ~~aRr~LR~~iE~~~l~~~~~~L~~f-~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 15 LEARRNLRSDIEKRLLKINQEFLKEF-SPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655444332 2222 22234688888999999999999999999888888889899999999999998
Q ss_pred HHHHHHHhHhhh
Q 015739 288 AKVRLAEDVVSV 299 (401)
Q Consensus 288 akvk~aE~lv~~ 299 (401)
.|.+++.....+
T Consensus 94 ~k~~ll~~f~~~ 105 (618)
T PF06419_consen 94 LKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHh
Confidence 888888877666
No 216
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.15 E-value=14 Score=39.86 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 242 QELELQVERLKGENATLYKQFTDAA-QQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~-qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
+.|..+-++|+.....+..++...- ....++..|-+.|+.++..|+..+..+.+
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555432 22344555556666666666555554443
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.98 E-value=27 Score=35.50 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
-+|+.|+.+...|...+..+++++.....+=..+|.....|+.++..+.+.+.
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555545555555566666666665554443
No 218
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.92 E-value=69 Score=36.13 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFTD 264 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~ 264 (401)
.++.+|+.||+.|..++..
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~ 478 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQN 478 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444
No 219
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.85 E-value=14 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..+..+.+++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666777777788777777754
No 220
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=69.78 E-value=34 Score=30.75 Aligned_cols=61 Identities=11% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..|-|.--...+.+|+.+|..|..|--.=..++..+-.+.+.+..+++.|+.-+..|..++
T Consensus 5 l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 5 LNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555677788888877776544445555555455555555555555555554443
No 221
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.48 E-value=56 Score=28.68 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
-|..-|-.-+..+..|..+|..-.+.+..+..|+..|..+-..|..+|..+
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555554444444444444444444444444444433
No 222
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=69.47 E-value=21 Score=38.43 Aligned_cols=52 Identities=29% Similarity=0.314 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHM----------QELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L----------~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
.+..||+|-|++--||-||.+.-=..+- .+|.+||++|+.+|..|..||..+
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3555566667777777666665443321 466777777777777777777543
No 223
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.40 E-value=92 Score=28.53 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=36.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 223 MVSNRESARRSRKRKQAHMQE-------LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~e-------LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+..=+.+++.-..=+..+.. |+..+..|+.|+..|.+.+...+.+...|..-|..++..+..+.+
T Consensus 43 ~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 43 LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444443 555555566666666666666666666666666666655555443
No 224
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.19 E-value=53 Score=37.28 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 247 QVERLKGENATLYKQFTDAAQ---QYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~q---q~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
....|+.||-.|.+++..|++ .|..+.-|+++|..+++-|+.++..+.++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776644 45666777777777777777766655554
No 225
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=69.15 E-value=1e+02 Score=28.82 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH----------------------HHHHHHH
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVER-------LKGENATLYKQFTDAA----------------------QQYKEAN 273 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~-------Le~EN~~L~~qL~~L~----------------------qq~~~l~ 273 (401)
+..=.+.+|.-..+-+..|.++..+|.. |+..-...+.+|..+. -++..+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777888778877765544 4444444444444333 3333445
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHhhhc
Q 015739 274 TNNRVLKSDVEALRAKVRLAEDVVSVG 300 (401)
Q Consensus 274 ~ENr~LKaqve~Lrakvk~aE~lv~~~ 300 (401)
.+-..|+.+-..|+.+++..+.++.+.
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777776653
No 226
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=69.05 E-value=21 Score=30.69 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+..+..+...+..+|..++.+...+...|+.|-.++..|..+.+
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555555555555555555544433
No 227
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.70 E-value=45 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
-.....+.+|.++.+.|+.||.+|+.++..+ ..+..||.+||..+.
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~ 110 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 3344455666666666666666666655433 355566666666443
No 228
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=68.70 E-value=20 Score=33.87 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
-+.=.|.|++.|+.+|..|+.++..|. ....+|..+-.++..|.-++-.+++
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~s 92 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAARS 92 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--S
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467778899999999999999998665 4567899999988888777655443
No 229
>PRK14127 cell division protein GpsB; Provisional
Probab=68.56 E-value=37 Score=29.87 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATL 258 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L 258 (401)
|+++-..++.|..||..|
T Consensus 32 Ld~V~~dye~l~~e~~~L 49 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEEL 49 (109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 230
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.54 E-value=28 Score=37.68 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..|.+-+.+.++|+++.+.|+.++..+..+...++.+=+.|..++..|++++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33467778888888888888877777666666655555556666666666665
No 231
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=68.17 E-value=36 Score=35.64 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGE------NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~E------N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+.++++|+..+..|+.. -.....++..+.+.+..+..+-..|+.++..|+.++.
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555442 1233344445555555555555555555555555444
No 232
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.71 E-value=79 Score=38.72 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 015739 219 RIRRMVSNRESARRSRKRKQ 238 (401)
Q Consensus 219 R~RR~lsNRESARRSR~RKk 238 (401)
+++.+.+.++.|++.+.-++
T Consensus 322 rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555433
No 233
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.70 E-value=26 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.|..+-..+-.+...+...+..|+.++..|+++...+
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555566666666665554433
No 234
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.59 E-value=52 Score=37.37 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+.||.+...|+.|..+++.+=..+-+.|..|+.||-.|..+|..|++
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666777888888888888887777765
No 235
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.57 E-value=47 Score=34.08 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+-+|+.+++++-.||.+|...|...+.....|..|.+.|+.+...+..
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555544444455555555544444433
No 236
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.56 E-value=73 Score=33.28 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 015739 271 EANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTC 304 (401)
Q Consensus 271 ~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t~ 304 (401)
.+..+=..+++++..+++++..+++.+.+..+..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~A 321 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKA 321 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEC
Confidence 4444555567777777777777777776665544
No 237
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=67.47 E-value=55 Score=34.75 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
+.+|..+-..-+..|+.|.+.|.+|+..-..+....+.+-..|..+++.
T Consensus 130 haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 130 HAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334456788888888888877666665555555555555443
No 238
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=67.46 E-value=59 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 219 RIRRMVSNRESARRSRKRKQAHMQELELQVER 250 (401)
Q Consensus 219 R~RR~lsNRESARRSR~RKk~~L~eLE~qV~~ 250 (401)
|.||+...-..-|+.|.-=+.=-++|..-|-+
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~ 90 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPT 90 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccc
Confidence 44555444444444444333334566655543
No 239
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.37 E-value=38 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 255 NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 255 N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.+|..-++.|.+++..+...|..|..++..|+..+..+
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666554
No 240
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.31 E-value=56 Score=35.07 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+..++...+.|...|+.+++.+.+++
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444
No 241
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.19 E-value=56 Score=25.17 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
.|..++..|..+|..|+.++..|...+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 242
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.99 E-value=90 Score=38.26 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATL 258 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L 258 (401)
++|+.+++..+.+...+
T Consensus 358 eELee~Lee~eeeLeel 374 (1486)
T PRK04863 358 EELEERLEEQNEVVEEA 374 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 243
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.97 E-value=88 Score=28.22 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.++|+.|..++++...-......++..++.....+..+=..+..-++.|..|+...
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777776666666666776666666555555555555555555555433
No 244
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.92 E-value=62 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.|++|..+|..|..+...|...+..++...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555555555555444443
No 245
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.89 E-value=13 Score=33.20 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
+-|+.++.+|.++...|+.||..||.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555566677777775
No 246
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=66.79 E-value=22 Score=29.31 Aligned_cols=39 Identities=10% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
....+...+..++..++++...+..||..|+.++..|..
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566777788888888888899999999999888854
No 247
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.75 E-value=1.3e+02 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+....+|.|++.+.+.|..|-..+..+|.++.+.+..|+..=+.++.+....+.
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888888888888877777776665444444444443333
No 248
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=66.63 E-value=40 Score=34.05 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
|-.=+-|+|||..-..++++++.| ..++..|+...- -..+|..|++++..+++||-+..+++..+.++
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l---~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKL---QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 333457888887655444443323 344444543322 24567889999999999999999888887543
No 249
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.53 E-value=85 Score=30.74 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 015739 241 MQELELQVER 250 (401)
Q Consensus 241 L~eLE~qV~~ 250 (401)
+..|+.+...
T Consensus 35 a~~Leek~k~ 44 (246)
T PF00769_consen 35 AEELEEKLKQ 44 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 250
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=66.04 E-value=81 Score=32.33 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 246 LQVERLKGENATLYKQFTDA--------------AQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L--------------~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.++..|+.||..|...+..+ ..++..++.+....|.+++.|.+.++....
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665554443 334455566667777788888877776543
No 251
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.92 E-value=93 Score=36.82 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 236 RKQAHMQELELQVERLKGENATL--------------YKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L--------------~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
-+...+++|+.+++.++.+...| ..++..++.+++....+=..++.++..+++++++.+.+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~i 519 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEI 519 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555544443 33444444444444444444555555555555555544
No 252
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.79 E-value=33 Score=38.16 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 246 LQVERLKGENATLYKQFTDAAQ---QYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~q---q~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.....|+.||-.|.+++..|++ .|..+.-|++.|..+++-|..++..+..+..
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~ 225 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKE 225 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888755 5788888999999998888888776665533
No 253
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.74 E-value=31 Score=27.19 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+++||.++..+...... +..||..|+..++.+.+-|+.+=++
T Consensus 2 i~elEn~~~~~~~~i~t--------------vk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 2 IDELENELPRIESSINT--------------VKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677766666655433 3455666777777777666554433
No 254
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.60 E-value=1.1e+02 Score=32.69 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+..-...+..++..+..+...+..+=+.|+.+++.|++++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444444444444444444455555555555554333
No 255
>PRK10963 hypothetical protein; Provisional
Probab=65.57 E-value=18 Score=34.62 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+.=.|.|++.|+.+|..|..++..|- ....+|..|-.++..|.-++-.++
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a~ 88 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAAD 88 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456677777777777777776553 445677777777777766654333
No 256
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.54 E-value=10 Score=32.06 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
|+.+++.|+.+++.++.+|..|..++...
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777777777777776666543
No 257
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.40 E-value=1.5e+02 Score=30.17 Aligned_cols=8 Identities=13% Similarity=0.667 Sum_probs=4.6
Q ss_pred hHHHhhcc
Q 015739 30 AFEEFFSS 37 (401)
Q Consensus 30 ~Fe~flee 37 (401)
..++||..
T Consensus 11 sL~dFL~~ 18 (312)
T smart00787 11 SLQDFLNM 18 (312)
T ss_pred cHHHHHHH
Confidence 35666663
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.31 E-value=75 Score=34.48 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+.+...+..+|..|++.....+.|++..+
T Consensus 395 ~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 395 QKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 259
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.27 E-value=35 Score=35.68 Aligned_cols=69 Identities=23% Similarity=0.188 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhccccccc
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGL 306 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t~~~ 306 (401)
++.+++|...-+.|+.--.+|....+.|+|+.+.+..+=.+|+..+++-..+.+-++++-.-..|.|.+
T Consensus 231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~ 299 (365)
T KOG2391|consen 231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTA 299 (365)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccc
Confidence 334444444555555555666777777777777777777888888887555555555443344556654
No 260
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=64.96 E-value=83 Score=37.46 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccc
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSH 313 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t~~~n~l~~~~ 313 (401)
+.++-..|.+|..++....++...+..+|...|.++..+++.....++.+..-..+..++.++..+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q 325 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQ 325 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334445699999999999999999999999999999999999988888877655555566666666
No 261
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.91 E-value=11 Score=30.06 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYK 260 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~ 260 (401)
++.+|+.++.+|+.||.-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666655554
No 262
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=64.90 E-value=68 Score=29.74 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=42.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELEL-------QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~-------qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+++..-+.|...-.||++.++.|.. ++..++.+...+..++..+++++..+ +..+|.+++....
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i---s~~~k~E~~rf~~ 202 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI---SENIKKELERFEK 202 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444445556666666666665553 46777777778888888777777776 4557777777643
No 263
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.82 E-value=32 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENA-TLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~-~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
.|-..=|.+|..|+.-.+ ...+++..|+.+...+..||..|+.++..-+
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666653332 2344444444444444444455555444433
No 264
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.54 E-value=55 Score=26.12 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
-..++.+++..+..|..|..++..|..+.
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777665444333
No 265
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=64.47 E-value=19 Score=39.71 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.|..+|..|.++.+.|..||..||.++..|..
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 46666666666666666666666666666644
No 266
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.33 E-value=34 Score=26.92 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.+..|+..+..++.||++|+..+..+.+..
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999998776554
No 267
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=64.28 E-value=31 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
|+.--..|.+++..++++...|..||++|-+=++.|
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 333333444444444444455566777777766665
No 268
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.23 E-value=54 Score=36.66 Aligned_cols=63 Identities=14% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQY-------KEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~-------~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+.+..|+.+|.++..-+.+......++.+++++- .....+-+.|+.....|...|+-++++-.
T Consensus 97 ~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 97 ELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344466666666666666666655555544443 33455566677777778888888887743
No 269
>PRK14127 cell division protein GpsB; Provisional
Probab=63.46 E-value=20 Score=31.56 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+.+.|..+..||..|+.++..|++++...+..+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666666666666666665555444
No 270
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.39 E-value=99 Score=36.70 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.|+-|...|.+++...++++.++..+=..|+.++..|+.+|..++
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444455555555555555555555555555555554443
No 271
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=63.34 E-value=1.4e+02 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHM 241 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L 241 (401)
..++.|+++++|...-..=+||..++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556688899988877777775444
No 272
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.97 E-value=36 Score=37.61 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
..|++|+.++..++.+...|..++..+.++......++..|.+++.-..+-+.+
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666666666666666666666665544443333
No 273
>PF15058 Speriolin_N: Speriolin N terminus
Probab=62.96 E-value=25 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+-+.+++..++.||.+||++|.-||....++..+
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~eLksaL 41 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHELKSAL 41 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3356677788899999999999998766555543
No 274
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.89 E-value=51 Score=36.48 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
.|+..++.+-+.+...-+.|..++.....++..+..+|..||.
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 275
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.50 E-value=71 Score=37.01 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
+-..=+--+++-...++.|.+++..|+.||++|..++.+...++.++..++..||.++.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333334444444555555555555555555555555555555555555555554444
No 276
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.47 E-value=67 Score=35.88 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHM----QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L----~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.|.|+.|-.+-|...-..+=.++...+ ..+|.+--.|+.|..+++-+-+.|-+.|..|+.||-.|..+|..||+
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 4566777766666555444433333333 23556666777888888888888889999999999999999888875
No 277
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.45 E-value=44 Score=28.90 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 239 AHMQELELQVERLKGENATLYKQF-TDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL-~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.....+|..+.+++.|...|...| .....-......+-..+..+...|+.+++-.+.++
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666554 22222222333333444455555555555554443
No 278
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.42 E-value=59 Score=37.64 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 229 SARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+-+..-++=+...++|+.+|..+..+.++|..++..|+-++
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444455566666555555555555555544443
No 279
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=62.35 E-value=1.5e+02 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
++.++..+.+++..+.-|+.+|..+...|.+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666655555444
No 280
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.14 E-value=43 Score=35.11 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQ----YKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq----~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+|..+++.|+.|-..+.+++..+..+ ...+..+-+.|+.++..|.++++.+++-+..
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443211 3455566677788888887777777654433
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.96 E-value=1.3e+02 Score=30.27 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQE--------LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~e--------LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.+..+.++++...-+.+.-.++ ++-+.. +..-+-+...+|..+.+++..-++....+..+-..|+++|+.|
T Consensus 141 del~e~~~~el~~l~~~~q~k~-~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 141 DELNEMRQMELASLSRKIQEKK-EEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665555444332222 222222 3344555668899999999999999999999999999999999
Q ss_pred HHHHHH
Q 015739 287 RAKVRL 292 (401)
Q Consensus 287 rakvk~ 292 (401)
+.....
T Consensus 220 ~~~~~~ 225 (258)
T PF15397_consen 220 QAQAQD 225 (258)
T ss_pred HHhhcc
Confidence 887763
No 282
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=61.28 E-value=89 Score=25.45 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 243 ELELQVERLKGENATLYKQFTD----AAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~----L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
++..++..|-.||..|+..+.. ++++|..+..=-..-+.+.+-+..|++-+..+|-
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~ 62 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVE 62 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777655543 4445555444444444455555555555554443
No 283
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.25 E-value=30 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.....+..++.+++.++.||..|..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555678888888888888888888776553
No 284
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.96 E-value=76 Score=25.94 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.+.+..+.....|...+...+++...|...+..|-.+|..|..+|..
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666777777777777766643
No 285
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=60.90 E-value=1.5e+02 Score=28.69 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQ--------------VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~q--------------V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
.|+.-+++..-..|..+|.||. +.+||.+ +.-|+.|-..|..++..=+.+...+..|++.+..+
T Consensus 93 qk~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~ 170 (192)
T PF09727_consen 93 QKKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQ 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667776665 4555532 45588899999999988888888888888888777
Q ss_pred HHHHHHHHHHH
Q 015739 283 VEALRAKVRLA 293 (401)
Q Consensus 283 ve~Lrakvk~a 293 (401)
+..=+.|.+..
T Consensus 171 l~eE~~k~K~~ 181 (192)
T PF09727_consen 171 LEEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHHH
Confidence 76655555543
No 286
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.79 E-value=1.5e+02 Score=28.76 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQA----HMQELELQVERLKGENATLYKQFTDAAQQYK----------EANTN---- 275 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~----~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~----------~l~~E---- 275 (401)
+.-.+|+||....+.++=.-+-+=-+ ++...-.+|..|+..|+.|......|..-+- .+..|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF 98 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh
Confidence 45568888888888777544332221 1222223444455445444444444333222 22222
Q ss_pred ----hHHHHHHHHHHHHHHHHHHh
Q 015739 276 ----NRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 276 ----Nr~LKaqve~Lrakvk~aE~ 295 (401)
-.+++++|....+|++.+|.
T Consensus 99 Gryta~vmr~eV~~Y~~KL~eLE~ 122 (195)
T PF10226_consen 99 GRYTASVMRQEVAQYQQKLKELED 122 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888877753
No 287
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=60.30 E-value=81 Score=26.42 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
.+|..++..-+.|...|..-+..|+.++.....-|..|..+...++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666666666666666666666666666677777777777653
No 288
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=60.23 E-value=91 Score=36.40 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 225 SNRESARRSRKRKQAHMQELELQVERLKGENAT 257 (401)
Q Consensus 225 sNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~ 257 (401)
+.-++++.+.-...+...+|..+|+.+..+-..
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554444455555555444444433
No 289
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=60.14 E-value=59 Score=28.18 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
|...+..|..++..+.++...+....+.+++++..|+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 290
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.98 E-value=81 Score=35.46 Aligned_cols=51 Identities=29% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+..|..++..|+.+...|..++..+.+.+.....++..+..+++.+...+.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666665566655555555544443
No 291
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.73 E-value=97 Score=36.15 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRK--------QAHMQELELQVERLKGENATLYKQ---------------------FTD 264 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RK--------k~~L~eLE~qV~~Le~EN~~L~~q---------------------L~~ 264 (401)
.++.+++-|.|.|+-.-+.+-+-| +..+.+-|.+++.+..+-..|..+ |++
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~ 180 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNE 180 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhH
Confidence 567778888888887665554333 222333333333333333333222 334
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..+|..+..||..++.+++.+-+|+
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778887777777776654
No 292
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.27 E-value=18 Score=38.78 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
++|..+|..|..+|..|+.++..+.-++..++.||+-|+.--..++++...-|+.+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 566777777888887788888888888888888888777665555555554444433
No 293
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.21 E-value=1.1e+02 Score=33.65 Aligned_cols=57 Identities=12% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++.+|-.++.........+..+...|..++...+.+...|..++..+..+++.++|-
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 294
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.19 E-value=34 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.|..++..++.+-..+..+|..|+.++
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555544
No 295
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.73 E-value=1.2e+02 Score=38.22 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 241 MQELELQVERLKGENATLYKQFTDA-------AQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L-------~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
++++-.++++|+.+|..|..++.++ ....+.+....+.|-.+++.|+.++.-+|+
T Consensus 1479 lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1479 LEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444 344455555566666666666665555554
No 296
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.54 E-value=73 Score=33.00 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHHHHh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVL---------------KSDVEALRAKVRLAED 295 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L---------------Kaqve~Lrakvk~aE~ 295 (401)
..+..|+.++..|..+|..|..++..+..++..+..+-..+ |++|..|+.+|..++.
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
No 297
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=58.44 E-value=43 Score=36.24 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.|++.|..++.+....-..+......+.++...+..+=..|+-++..|.++.+.+
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~L 486 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTREL 486 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444333
No 298
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=58.36 E-value=2e+02 Score=28.64 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 015739 283 VEALRAKVRLAED 295 (401)
Q Consensus 283 ve~Lrakvk~aE~ 295 (401)
+..+++++..++.
T Consensus 248 l~~~~~~l~~~~~ 260 (423)
T TIGR01843 248 LTEAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 299
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=58.30 E-value=1.2e+02 Score=27.80 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAKVRLA 293 (401)
Q Consensus 277 r~LKaqve~Lrakvk~a 293 (401)
..|+.+++...+.+..+
T Consensus 64 ~~Lr~~~~~~~~~l~~r 80 (135)
T TIGR03495 64 AQLRQQLAQARALLAQR 80 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 300
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.28 E-value=22 Score=27.65 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
-.....++..|+.||..|+.+|..++
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677889999999999999987554
No 301
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=58.17 E-value=71 Score=30.01 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKE-ANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~-l~~ENr~LKaqve~Lrakv 290 (401)
..|++|+..++.|....+.+...+..+..++.+ ...+=..|+.++..|+.-+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~ 131 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIV 131 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777777777777666555422 2222344455555444433
No 302
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.12 E-value=63 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+..+...|...+..+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566777888888999999999999998875
No 303
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.08 E-value=1.1e+02 Score=29.46 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 278 VLKSDVEALRAKVRLA 293 (401)
Q Consensus 278 ~LKaqve~Lrakvk~a 293 (401)
.+..++..|.++++-+
T Consensus 173 ~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 304
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.95 E-value=1.4e+02 Score=34.39 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+..|..+++.++.||..|+.++..++.++
T Consensus 136 ~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 136 IEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444433
No 305
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.86 E-value=1.9e+02 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.++++..++......+..|..++..+...+.........|..+++.|...+.+...
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555666666666665555443
No 306
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.62 E-value=1e+02 Score=29.79 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.1
Q ss_pred CCChhhHHHHHhcc
Q 015739 86 DGHDQHLSFAFKNH 99 (401)
Q Consensus 86 ~~dp~~yn~~~k~~ 99 (401)
.++--|+-.+++.+
T Consensus 25 ~g~vaEL~qli~~~ 38 (192)
T PF11180_consen 25 QGNVAELQQLIQDH 38 (192)
T ss_pred cccHHHHHHHHHcC
Confidence 44445555555554
No 307
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.56 E-value=93 Score=25.84 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++|.+||.++..-+.-..+|...+.....- =..++.++..|..|++..+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~-------i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLV-------IDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc
Confidence 456777777766665555555555432222 2345556666666655444
No 308
>PRK11281 hypothetical protein; Provisional
Probab=57.51 E-value=1.3e+02 Score=36.03 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccc
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSH 313 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t~~~n~l~~~~ 313 (401)
+.++-..|..|..++....++...+..+|...|.+++.+++.....++.+..-..+..++.++..+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q 345 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQ 345 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445667799999999999999999999999999999999999888887776655555566666655
No 309
>PHA03011 hypothetical protein; Provisional
Probab=57.45 E-value=75 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+.+++|-.|...|-.|..-+..+..++.+-.+.-..+=..|++++.+|...+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776666666666555555555566777777776554
No 310
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.44 E-value=56 Score=35.96 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.|..+..+..++..||.+|..+|.+++++...+..|+..|.+.+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777787777777777777777766655443
No 311
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.19 E-value=1.7e+02 Score=31.22 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.+|.+-+..+.+++..+..+-+.|..++++|++++..+++-+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888888888887766543
No 312
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=57.16 E-value=52 Score=27.99 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
|..+-.||-.|+.++..++.=+ ..-+-..|-+++..|+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 3446677777777777665444 445666677777777654
No 313
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=56.85 E-value=35 Score=35.38 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAA 266 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~ 266 (401)
...|+.||++|++|+..|+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~ 77 (337)
T PRK14872 59 ALVLETENFLLKERIALLE 77 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 314
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=56.81 E-value=90 Score=29.10 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
-.+..+++++.|.-|+-.=+.|-....+|..++...+.....|..+|+.+..++
T Consensus 82 a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 82 AEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888877778888888888777776666666666665544433
No 315
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=56.65 E-value=33 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhHHHHH
Q 015739 252 KGENATLYKQFTDAA---QQYKEANTNNRVLKS 281 (401)
Q Consensus 252 e~EN~~L~~qL~~L~---qq~~~l~~ENr~LKa 281 (401)
..||+.|++++.+++ .+...++.||+.||.
T Consensus 72 ~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~ 104 (284)
T COG1792 72 ALENEELKKELAELEQLLEEVESLEEENKRLKE 104 (284)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443332 233445555555554
No 316
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.64 E-value=1.3e+02 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.+.|..|-..+++++..+......+..++..|+.++..|++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345566666666666666666666677777777777777764
No 317
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.56 E-value=47 Score=32.07 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccc
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSVGSL 302 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~~~~ 302 (401)
..++.+++.++.+++..++.+.-.++
T Consensus 172 ~~v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 172 SRVRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhceEEE
Confidence 45677777777777777766665444
No 318
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.45 E-value=67 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 232 RSRKRKQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
.-=++|++++.+-+.+.+.++.+..+|..++..
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666555555555555555554443
No 319
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=56.31 E-value=1.3e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
|+-|=...+.+|..|+.++..|..++..|+.++...
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555444444333
No 320
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=55.92 E-value=45 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQF 262 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL 262 (401)
|+.++..|+.++..|..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQ 45 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 321
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.61 E-value=1.7e+02 Score=34.93 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
..+.|.-++++|+.+...+..++..+..++..+..+...|+..+......+..++.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 35667778888888888888888888888888888888887776655544444443
No 322
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.32 E-value=2e+02 Score=32.41 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 015739 283 VEALRAKVRLAE 294 (401)
Q Consensus 283 ve~Lrakvk~aE 294 (401)
++.|..++..++
T Consensus 497 ve~L~~~l~~l~ 508 (652)
T COG2433 497 VEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 323
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.31 E-value=1e+02 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+|++|..+.+.|..++..|++..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv 26 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV 26 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 324
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.98 E-value=1e+02 Score=28.78 Aligned_cols=48 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++..|+.+...+..++..|...+..+...=..|+.+...|..+...+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444433333334444444433333333
No 325
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=54.94 E-value=66 Score=33.73 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKR---------KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~R---------Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
+.++|-++-|++| |+.=-.| =|..|.++|.++..-..||..+.+++..+++-+ .+|..+.+
T Consensus 123 EveekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~-------s~Lq~~~~ 192 (405)
T KOG2010|consen 123 EVEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMC-------SVLQHKME 192 (405)
T ss_pred HHHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4566666778877 2222111 123455555566555666666666665554444 45666666
Q ss_pred HHHHHHHHHHhHhhh
Q 015739 285 ALRAKVRLAEDVVSV 299 (401)
Q Consensus 285 ~Lrakvk~aE~lv~~ 299 (401)
.|.+.++.++.|+.-
T Consensus 193 elKe~l~QRdeliee 207 (405)
T KOG2010|consen 193 ELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777777766
No 326
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.93 E-value=1.2e+02 Score=30.00 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|-.++-|+-++---.+|.+++..+ +.+...|..++..++.+.... |+.||+++++...
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k~-------~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~ 209 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALANK-------KADRDLLKEEIEKLEDKVECA---NNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 445566655555555555555444 444445555555555554444 7779998888743
No 327
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.90 E-value=70 Score=35.14 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRE---SARRSRKRKQAHMQELELQVERLKGE 254 (401)
Q Consensus 214 ~~e~KR~RR~lsNRE---SARRSR~RKk~~L~eLE~qV~~Le~E 254 (401)
....++.++.++-++ .++....-+++.+++++++|+.|+..
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 344455554444333 33333333455788888888888764
No 328
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=54.90 E-value=1.6e+02 Score=35.14 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK 280 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK 280 (401)
.+-.+-.|.||+--..--+++-..++++..+.-.|+.++..|..++.+|..++..+...+..|.
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888887777777777778888888888888887777777777777666655554443
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=54.79 E-value=62 Score=35.27 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAA------QQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~------qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++.||.+++.|+.+-..|..++..-. .++..+..|=..++.+++.|..+-..++
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999998888888875421 1455555555666666666665554444
No 330
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.73 E-value=1.4e+02 Score=36.13 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=18.7
Q ss_pred CCC-ccccCCcchhhHHHhhccccCCC
Q 015739 17 GPG-EIMKRSPSELAFEEFFSSEIEPT 42 (401)
Q Consensus 17 ~~g-~~M~r~~SEw~Fe~flee~~~~t 42 (401)
|+| +.-.|.=-=|..==|+-|.++-+
T Consensus 252 ~~~~g~yG~ecDwWSlGV~~YEMlyG~ 278 (1317)
T KOG0612|consen 252 GDGKGEYGRECDWWSLGVFMYEMLYGE 278 (1317)
T ss_pred cCCccccCCccchhhhHHHHHHHHcCC
Confidence 444 56666556788889999988764
No 331
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.72 E-value=44 Score=33.86 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
.-+-++..=..++..|.+|+.++..|+.+......+...++.+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444566666777777766666665554444444333
No 332
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=54.68 E-value=14 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
...|-..|+.|..++.++..+...|..||-.||.++
T Consensus 9 n~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 9 NRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344555666666677777767777777777777654
No 333
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.65 E-value=1.5e+02 Score=37.39 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
+-.+|-.++.+..+.+|+.++..+..-..+|.+ ....+..+...|+..++++...++..|+-.
T Consensus 1487 e~l~renk~l~~ei~dl~~~~~e~~k~v~elek-------~~r~le~e~~elQ~aLeElE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1487 EELRRENKNLSQEIEDLEEQKDEGGKRVHELEK-------EKRRLEQEKEELQAALEELEAALEAEEDKK 1549 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 334444444444455554444443333333333 233333444444444444444444444433
No 334
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.56 E-value=2.3e+02 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.++.++..++.++..+..++..++.++
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 335
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=54.47 E-value=1.5e+02 Score=26.08 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
=+-.|+.-|.+.=.+ +..+.++..++..+-.+-..|..++..+.+++..+ ..+-....=...|+..+..++..
T Consensus 39 l~~~n~~lAe~nL~~-~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eee 111 (150)
T PF07200_consen 39 LLAENEELAEQNLSL-EPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEE 111 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHH
Confidence 355677777655333 46677788888888888888888888887777776 66666666666677777666654
No 336
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.39 E-value=1.4e+02 Score=32.42 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhccc
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSL 302 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~ 302 (401)
-..+++.+++.+..+...+..+...+...+..+..+-...+.++..++.++....+.+....+
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356666667777777777777777777777777777788888888888888777777766444
No 337
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=54.35 E-value=82 Score=26.76 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.|+.|..-+..|+..|..|..+|. .|...|++.|.+.++.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~-------~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQ-------ELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 355666666666666666655554 5556677766655443
No 338
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.35 E-value=1.2e+02 Score=27.31 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
+..|+.++...+...+.-...+..|+..
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~ 70 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKN 70 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 339
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.26 E-value=95 Score=34.50 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFT 263 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~ 263 (401)
-|.+++.|+.+|..|+.+++
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544443
No 340
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.96 E-value=78 Score=29.23 Aligned_cols=9 Identities=44% Similarity=0.490 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 015739 245 ELQVERLKG 253 (401)
Q Consensus 245 E~qV~~Le~ 253 (401)
+.+++.++.
T Consensus 131 ~~~~~~~~k 139 (192)
T PF05529_consen 131 EEKLEALKK 139 (192)
T ss_pred HHHHHHHHH
Confidence 333333333
No 341
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=53.87 E-value=17 Score=34.87 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.+|......|+++|..|..+|..|+.++..|++.+..+.
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 345555555666667777777777777777776665444
No 342
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.82 E-value=51 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
..|..++..+.+++..+..++..|+..+..+.++++.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555444443
No 343
>PRK10722 hypothetical protein; Provisional
Probab=53.81 E-value=86 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 267 QQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 267 qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+++.+..+++.|+.++..+++|+..+.|+
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777777777776666554
No 344
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.75 E-value=1.3e+02 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE 294 (401)
..+|-+++.|+++++.+|
T Consensus 608 d~~R~Ei~~LqrRlqaaE 625 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAE 625 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 345
>COG5570 Uncharacterized small protein [Function unknown]
Probab=53.64 E-value=19 Score=28.41 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
.|+.+|+.+-..|+.|..+-...=..=-..+..|...--.||.+++.|+++
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777777777776665432211000111223333334677778777654
No 346
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.61 E-value=37 Score=27.99 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
|..++.+++.++-|+-.||+++..+|+++..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 347
>PLN02320 seryl-tRNA synthetase
Probab=53.59 E-value=1.8e+02 Score=31.77 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQY---------KEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~---------~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
..+.+|..+...+..+-..|+.+...+..++ ..+..+=+.||.++..|.++++..++-
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444443 244445566666666666666655543
No 348
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.48 E-value=2.1e+02 Score=27.45 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
..+.++.++..|+........+...+...+..|..+...|..++...+.+.....
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555566666666665555555554443
No 349
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=53.00 E-value=1.3e+02 Score=29.30 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 015739 243 ELELQVERLK 252 (401)
Q Consensus 243 eLE~qV~~Le 252 (401)
.++.+++..+
T Consensus 112 ~~~~~~~~a~ 121 (334)
T TIGR00998 112 SLKIKLEQAR 121 (334)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 350
>PRK14160 heat shock protein GrpE; Provisional
Probab=52.90 E-value=78 Score=30.79 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
+..|+.++..|+.+...|..++..++.++..+.++-.-+|.+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666655555444444433
No 351
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=52.69 E-value=1.5e+02 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+=+.+...|+.+...-...|..+.++...|.-.|..|-.+|+.|+..+...+
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666777777777777788888888888999999999999988876433
No 352
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=52.46 E-value=69 Score=29.42 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQ--------QYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~q--------q~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
-++.|+.+++.|+.+..++.+++..... .|+....+-..|..++..|+.++..+
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556677777776665556555533222 24444444455555555555555433
No 353
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=52.45 E-value=57 Score=38.53 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
+..++++|+..+-.|+.||+.|.+++..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4466788888888899999999998887755
No 354
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.33 E-value=1.5e+02 Score=28.68 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.++.+|..++++|..+|..+..
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~ 185 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSS 185 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888877766543
No 355
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=52.09 E-value=1.3e+02 Score=27.49 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+++....+..|...-.....+-..+...+..|..|...|..-.+.+.++|+.-+.+
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L 78 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEEL 78 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Confidence 44455555556666666666666667777777777777777777777777766654
No 356
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=52.05 E-value=73 Score=30.71 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGE-------NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~E-------N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+-+-|.+|+--.+.+..+|+.|... -.++..++...++.|..+ |..|+.++..|-.
T Consensus 114 ~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~l---N~~Lk~ELP~l~~ 176 (224)
T cd07591 114 AIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETL---NDQLKTELPQLVD 176 (224)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHH
Confidence 3344566666667777777777532 234556666666666665 9999999998855
No 357
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.73 E-value=96 Score=34.07 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 015739 278 VLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 278 ~LKaqve~Lrakvk~aE~lv 297 (401)
.|+.++..+++++..++.-+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444433
No 358
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.49 E-value=68 Score=32.09 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
..+++++.+|..|...|...+...+ ......+..|..+++.|+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHH
Confidence 3344444444444444444444433 122244455555555554
No 359
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.37 E-value=1.9e+02 Score=32.15 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
+..||.++..|+.||..|..+|..+..++++-
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44566677777777777777777766655443
No 360
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.34 E-value=1e+02 Score=36.43 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY----------KEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~----------~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++-+..-=.||+..+.+|+...+.|..+...+..++.+++++. ..|...|-.|..+|..|+..|..+|++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
No 361
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.19 E-value=1.1e+02 Score=33.57 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDA---AQ----QYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L---~q----q~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
++.++.||.+++.|+.+..+|..++..- .. ++..+..|=..++.+++.|..+-..++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888888887777777532 11 344444455556666665555544444
No 362
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=51.09 E-value=85 Score=39.21 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 231 RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|..+.+.-..+.+|..+|+.|+.+...|...+..+..++....++...|+.++....++.+.+.
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777778888777777777777777777777777777777777776666655443
No 363
>PF14282 FlxA: FlxA-like protein
Probab=51.05 E-value=1.2e+02 Score=26.14 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 015739 244 LELQVERLK 252 (401)
Q Consensus 244 LE~qV~~Le 252 (401)
|..++..|.
T Consensus 31 Lq~ql~~l~ 39 (106)
T PF14282_consen 31 LQEQLQELS 39 (106)
T ss_pred HHHHHHHHH
Confidence 333333333
No 364
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=50.95 E-value=84 Score=31.12 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLYKQFTD---------------AAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~---------------L~qq~~~l~~ENr~LKaqve 284 (401)
|-.-+.|-...+..||.+-+.|+.....|++++.. .++.+..|..-|+.||+|++
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 365
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=57 Score=29.26 Aligned_cols=35 Identities=29% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
..|..-+++|+.+++.|+.+...|.++-..+++++
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777766666666665554433333
No 366
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.88 E-value=1.5e+02 Score=26.54 Aligned_cols=7 Identities=14% Similarity=0.624 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 015739 288 AKVRLAE 294 (401)
Q Consensus 288 akvk~aE 294 (401)
.+|+|+|
T Consensus 53 rrIkMLE 59 (134)
T PF08232_consen 53 RRIKMLE 59 (134)
T ss_pred HHHHHHH
Confidence 3333333
No 367
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=50.75 E-value=80 Score=28.04 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHh
Q 015739 275 NNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~aE~lv 297 (401)
+=..|+.+|+.|+++|..++.-+
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 84 EMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 33778888888888888877543
No 368
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.26 E-value=98 Score=33.64 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAH----MQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~----L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
-..++-++++.+=.||.++ +++++.+...++.+|..|.+.......++.
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445566666666665543 456667777777777777766655544443
No 369
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=50.16 E-value=1.1e+02 Score=31.16 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
.+.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555555443
No 370
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.83 E-value=1.2e+02 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+..+.+|..++-.-+.|...|...-.-=.+++..+..|-..|+.++.++|-
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554444444444444333333345566666677777777666644
No 371
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=49.79 E-value=3e+02 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
....|+.++++|..+.....+....+.+....+..+...++...++|++.-...+.+
T Consensus 104 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~i 160 (779)
T PRK11091 104 LNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSF 160 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544433333333333344444444444344444433333333
No 372
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.76 E-value=5.4 Score=44.07 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE 271 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~ 271 (401)
++|.+-+.+|..+|+.|+.+|..|..+...|..++..
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888887777766665555433
No 373
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.73 E-value=51 Score=33.87 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAKVRL 292 (401)
Q Consensus 277 r~LKaqve~Lrakvk~ 292 (401)
..++.+++.|+.++++
T Consensus 32 ~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 32 EKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 374
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=49.52 E-value=1.2e+02 Score=27.27 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHHH
Q 015739 276 NRVLKSDVEALRAKV 290 (401)
Q Consensus 276 Nr~LKaqve~Lrakv 290 (401)
|..|..+|.-|+..|
T Consensus 48 ~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 48 KKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 375
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.50 E-value=71 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKE 271 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~ 271 (401)
-|++|-++|+..+.||-+|+.+..-|-|-+..
T Consensus 71 TLdDLSqRVdsVKEEnLKLrSENQVLGQYIeN 102 (120)
T KOG3650|consen 71 TLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 102 (120)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 34445555555555555555444444433333
No 376
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=49.43 E-value=1.9e+02 Score=25.67 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015739 277 RVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~ 295 (401)
..|..-+..|..+|.++|-
T Consensus 99 dslsksvgklahkvdlleh 117 (121)
T PF10669_consen 99 DSLSKSVGKLAHKVDLLEH 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777888888877764
No 377
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=49.24 E-value=1.1e+02 Score=31.85 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDA------------AQQYKEANTNNR-VLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L------------~qq~~~l~~ENr-~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.+|+.++..|+.+..++..++..+ +.++..+..+.. .+..++..+++++..++..+..
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444432 333333333333 4556666666666666655443
No 378
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=49.15 E-value=1.8e+02 Score=35.22 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
.++..++.+...|..++.++..++..+...|+.+
T Consensus 501 ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 501 EKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 379
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=49.11 E-value=71 Score=28.99 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
|......+..|+.||.-|+..+..+++-|..= |..++.||.+++
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed-------~kTI~~L~~qL~ 123 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEED-------RKTIELLREQLK 123 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHH
Confidence 56667788889999999999888887777543 344555555544
No 380
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=49.10 E-value=86 Score=30.53 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKG-------ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~-------EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+-.-|.||+.-.+....+|+.|+. .-.+...++..+++.|..+ |..|+.++..|-.
T Consensus 109 ~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~l---N~~Lk~ELP~L~~ 171 (211)
T cd07611 109 RIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEF---NVDLQEELPSLWS 171 (211)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 334467777777888888888864 2233444555555555554 9999999988843
No 381
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.08 E-value=1e+02 Score=28.49 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQF 262 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL 262 (401)
+|..|..|...|+.+|
T Consensus 90 kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 90 KINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555554444
No 382
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.99 E-value=77 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.||..+++-.+.|-.-|++.+ ..+..+|+.|..++..++.+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl-------~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKL-------SELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666655555544 567788999999888876543
No 383
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.80 E-value=1.7e+02 Score=24.80 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ---QYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q---q~~~l~~ENr~LKaqve~Lrakvk 291 (401)
|+.++.+.-.=+.. +.+|+..++.|......|...+..+.+ +...|+.-=.+|-.-...|+.|++
T Consensus 30 N~~~~~kY~~~~~~-~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 30 NKATSLKYKKMKDI-AAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 384
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=48.65 E-value=58 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK 280 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK 280 (401)
..|..++.|+.|...=-.++..|++++..+...|+.|.
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444444444455443
No 385
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.38 E-value=1.7e+02 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhH
Q 015739 281 SDVEALRAKVRLAEDV 296 (401)
Q Consensus 281 aqve~Lrakvk~aE~l 296 (401)
.++..|.++++-...+
T Consensus 486 sei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 386
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=48.34 E-value=1.5e+02 Score=24.22 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQ-------YKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq-------~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+++|+.+|..|...-.++..+|.+|.+. +-.+..+-...-+++..++++++.++
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667776666666666666665442 23333333444445555555555444
No 387
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=48.19 E-value=1.4e+02 Score=34.40 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.|..+++.+.+++.++...+..||+...+|.+-...++
T Consensus 96 dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~ 133 (829)
T KOG2189|consen 96 DLEEQLEKLESELRELNANKEALKANYNELLELKYVLE 133 (829)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666555554444433
No 388
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=48.04 E-value=38 Score=30.21 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLY 259 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~ 259 (401)
|-.|..|+.+.|+.+ .++.+++|+.++..|+.+.+.+.
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666555554433 23456677777776666655543
No 389
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.94 E-value=3.3e+02 Score=28.02 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQ-AHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk-~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
+..|.-+.+..++-+++++.. +.+.+|-.++..|+.+-..+..++..+..+...+
T Consensus 26 ~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ei 81 (294)
T COG1340 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEI 81 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555544322 3344444444444444444444444444443333
No 390
>PHA03161 hypothetical protein; Provisional
Probab=47.89 E-value=2.2e+02 Score=26.67 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
-|.+-|+.+..|+. .+++..|..|..+.+...+++..|..--......=..|..++..|+..++.
T Consensus 43 t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ 107 (150)
T PHA03161 43 TKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHF 107 (150)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544 677778888777777777777766542111222223455555555555443
No 391
>PLN02939 transferase, transferring glycosyl groups
Probab=47.85 E-value=1.7e+02 Score=34.64 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
|.+++..+..||..||.+++.|.+++-...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999988765443
No 392
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=47.71 E-value=2.8e+02 Score=27.17 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~q 261 (401)
.+|++++...-+.|.+.|..=++.+.+.+.++..++.+-..+..+
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 79 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777766666666666666666666665555444
No 393
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.70 E-value=50 Score=36.70 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=3.0
Q ss_pred HHHhHHHH
Q 015739 273 NTNNRVLK 280 (401)
Q Consensus 273 ~~ENr~LK 280 (401)
..||..|+
T Consensus 572 ~~En~~L~ 579 (722)
T PF05557_consen 572 QAENEDLL 579 (722)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 394
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.55 E-value=2.2e+02 Score=29.95 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhHhhh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN---RVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN---r~LKaqve~Lrakvk~aE~lv~~ 299 (401)
-..+-+|..+..+|+.+...|+.+...+++++..+.... ..|++++..|.++++.++..+..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888887644332 25888888888888888776655
No 395
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=47.54 E-value=2.1e+02 Score=30.93 Aligned_cols=62 Identities=24% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 229 SARRSRKRKQAHMQELEL-----QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~-----qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
-|-+-+..-+++++.||. +++.|..|-+.|..+-..|.+++..+..++..|--++.+++++-
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778877775 34455556666666666666666666666666666666665543
No 396
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.49 E-value=1.2e+02 Score=32.82 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
.|..+.-. +|+.+.+.+...+..++....++..++..++.++..+..+-|+||.+++.
T Consensus 435 drl~~~L~--qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 435 DRLVESLQ--QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 44555678888888888888889999999999998888889999998887
No 397
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.23 E-value=1.1e+02 Score=32.92 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVER--------------LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~--------------Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.-|++|-++|+.+++. ...+.+.+..+|.-|.++|.+..-||..|-..++.-++.+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaL 458 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQAL 458 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888876543 3345667888888899999999999999888887766654
No 398
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.21 E-value=1.3e+02 Score=25.19 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL 262 (401)
+..|..++..|..+|..|+.++
T Consensus 77 i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443
No 399
>PF14645 Chibby: Chibby family
Probab=47.19 E-value=69 Score=28.29 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L 265 (401)
|..+.++|+.||.-|+-++..|
T Consensus 76 l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555443
No 400
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=47.18 E-value=93 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNN 276 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN 276 (401)
|...|..|..|..+|..++..+++++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777776665444
No 401
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=47.16 E-value=1.2e+02 Score=32.67 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 225 SNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 225 sNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
++|+-|.-|-+-+-..+-++|.+|.+|+.+..+|+.-|.
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~ 437 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLN 437 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777665656677888888888888777776654
No 402
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.90 E-value=73 Score=32.77 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNR 277 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr 277 (401)
.+|+.++++|+.++..|..++..+++++..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 11 SELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655555555544444433333
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.81 E-value=2.2e+02 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
.+.+|+.+++.|+...+.|..++..
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 404
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=46.81 E-value=2.1e+02 Score=33.54 Aligned_cols=87 Identities=23% Similarity=0.244 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKG--ENATLYKQF-----------TDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~--EN~~L~~qL-----------~~L~qq~~~l~~ENr~LKaq 282 (401)
|+||+.--..-|+.-|.-|.+++-+..+++.++.+++. -+.+..+++ .....+...+..|+++|..+
T Consensus 606 E~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~r 685 (988)
T KOG2072|consen 606 EEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSR 685 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666666665556666666666551 111111110 12456677888888888888
Q ss_pred HHHHHHHHHHHHhHhhhccc
Q 015739 283 VEALRAKVRLAEDVVSVGSL 302 (401)
Q Consensus 283 ve~Lrakvk~aE~lv~~~~~ 302 (401)
++....++.-.|+......+
T Consensus 686 L~~q~KkiDh~ERA~R~Eei 705 (988)
T KOG2072|consen 686 LQYQEKKIDHLERAKRLEEI 705 (988)
T ss_pred HHHHHhhhhHHHHHHHHHhh
Confidence 88888777777766555433
No 405
>PF14282 FlxA: FlxA-like protein
Probab=46.73 E-value=83 Score=27.02 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYK 260 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~ 260 (401)
..+..|+.++..|+.+...|..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3466677777777777666665
No 406
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.52 E-value=80 Score=32.98 Aligned_cols=13 Identities=31% Similarity=0.010 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFT 263 (401)
Q Consensus 251 Le~EN~~L~~qL~ 263 (401)
|+.++..|..++.
T Consensus 27 ~~~~~~~~~~~~~ 39 (398)
T PTZ00454 27 LEKELEFLDIQEE 39 (398)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 407
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.42 E-value=2.2e+02 Score=29.98 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN----NRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~E----Nr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+-.|..+..+|..+-..|+.+...+.+++..+... -..|++++..|.++++-++..+..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777778888888888888887777664322 247777888888888777765544
No 408
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.37 E-value=2.5e+02 Score=33.67 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=6.0
Q ss_pred hHHHhhccc
Q 015739 30 AFEEFFSSE 38 (401)
Q Consensus 30 ~Fe~flee~ 38 (401)
+|++||+.+
T Consensus 664 ~~~k~ie~a 672 (1311)
T TIGR00606 664 VYSQFITQL 672 (1311)
T ss_pred HHHHHHHHH
Confidence 567777765
No 409
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.15 E-value=35 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLK 280 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK 280 (401)
|...|+.||..|++++.+|+.+.+.| ||..||
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 45567777777777777777777776 666665
No 410
>PLN02678 seryl-tRNA synthetase
Probab=46.14 E-value=2.1e+02 Score=30.79 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT---NNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~---ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
-..+-+|..+...|..+-..|+.+...+..++..+.. +-..|++++..|.++++.++..+..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888865332 2236778888888888888776655
No 411
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.10 E-value=2.3e+02 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 268 QYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 268 q~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.|.....+-..|+..+..|++++..++
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666555554
No 412
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.09 E-value=2.2e+02 Score=30.70 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.9
Q ss_pred CCCCCCC
Q 015739 134 SQNPNSS 140 (401)
Q Consensus 134 ~~~p~~~ 140 (401)
++.|...
T Consensus 36 ~LRPkqT 42 (499)
T COG4372 36 GLRPKQT 42 (499)
T ss_pred ccCcccc
Confidence 5566644
No 413
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.99 E-value=1.7e+02 Score=26.32 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLY-------KQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~-------~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
+=.-|.++..++..++..+...+.+...|. .++..++.++..++.+=..++.+.+...
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544443 2444444444444444444444444443
No 414
>PRK10698 phage shock protein PspA; Provisional
Probab=45.95 E-value=2.8e+02 Score=26.71 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 245 ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 245 E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.++..|+.+.......+..|+.++..|...=..+|.+-..|-++.+.++.....
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555544443
No 415
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=45.93 E-value=2.4e+02 Score=31.43 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 015739 231 RRSRKRKQAHMQELELQV-ERLKGENATLYKQFTDAAQQYKEAN---TNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV-~~Le~EN~~L~~qL~~L~qq~~~l~---~ENr~LKaqve~Lrakvk~a 293 (401)
||-..-|+.-+++..... ...+..--+|.+|+.....++..|. .||..|+++++.||.+=+.+
T Consensus 603 q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~l 669 (673)
T KOG4378|consen 603 QRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQTL 669 (673)
T ss_pred HHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Confidence 444444444444444322 2333333456667777667777777 89999999999998765543
No 416
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.72 E-value=2.2e+02 Score=34.00 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 226 NRESARRSRKRKQAHMQELELQVE-------RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~-------~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
-++.+.+--..|.+++.+|+..+. .+-.++.++..++..+..+...+-.|-..|+..++.++.-|..++..+.
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556555555444 3334444445555555555555555666677777777777776665544
Q ss_pred h
Q 015739 299 V 299 (401)
Q Consensus 299 ~ 299 (401)
.
T Consensus 499 ~ 499 (1200)
T KOG0964|consen 499 A 499 (1200)
T ss_pred H
Confidence 3
No 417
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.60 E-value=2e+02 Score=27.20 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 015739 242 QELELQVER 250 (401)
Q Consensus 242 ~eLE~qV~~ 250 (401)
.+|+.+++.
T Consensus 86 ~~l~~~i~~ 94 (188)
T PF03962_consen 86 EELEEKIEE 94 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 418
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.52 E-value=2.1e+02 Score=26.33 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHHHHH
Q 015739 275 NNRVLKSDVEALRAKVR 291 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk 291 (401)
.|..|+.+++.|+++.+
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 419
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=1e+02 Score=28.42 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 015739 262 FTDAAQQY 269 (401)
Q Consensus 262 L~~L~qq~ 269 (401)
+..|.+++
T Consensus 117 l~~l~~~~ 124 (145)
T COG1730 117 LAELAQRI 124 (145)
T ss_pred HHHHHHHH
Confidence 33333333
No 420
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.43 E-value=3.5e+02 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|...+.+++.++.+-.+..+++..+++++..+...=..|+.+-.+|..
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443333333333333333333
No 421
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=45.40 E-value=1.4e+02 Score=30.83 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERL 251 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~L 251 (401)
...+|.-|..+||+-.++-++++.++...+..++.+|
T Consensus 273 ~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 273 KKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555777777777777777666555555544443
No 422
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=45.29 E-value=1.1e+02 Score=30.60 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
.-..+.+|+++-++|+.|+.+|..++.. ....++.||++||+-+.-
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 3445667889999999999988766654 344588999999996554
No 423
>PRK11281 hypothetical protein; Provisional
Probab=45.12 E-value=2.4e+02 Score=33.80 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQ-----------AHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk-----------~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
|.+.|+-.||.--+.-|.+.+ .+...|+.+...|+.+|.-++.++..
T Consensus 160 RAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~ 217 (1113)
T PRK11281 160 RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEG 217 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555554444444332 33555666666666666665555543
No 424
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=45.08 E-value=1.8e+02 Score=24.18 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+-+..|+.+-..|..-|.....++..+...|..=..-=..+|.+++....++......+..
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888766666677899999999998877765544
No 425
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.03 E-value=73 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
++||+.++..|+.|...+..++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888887776653
No 426
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=44.81 E-value=1.9e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.+++..+..+|..|+.+|..=..+|
T Consensus 41 tkEL~~Ak~e~~~Lr~dl~aG~~RL 65 (125)
T PF03245_consen 41 TKELADAKAEIDRLRADLAAGNKRL 65 (125)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCceE
Confidence 4445556666666666665544433
No 427
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.55 E-value=4.2e+02 Score=28.73 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENA 256 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~ 256 (401)
-.+|..++..|-.+..
T Consensus 146 ~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 146 AQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334433333333333
No 428
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.36 E-value=79 Score=26.94 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=5.4
Q ss_pred HHhHHHHHHHHH
Q 015739 274 TNNRVLKSDVEA 285 (401)
Q Consensus 274 ~ENr~LKaqve~ 285 (401)
.+|...|++.++
T Consensus 53 vkn~~vrqknee 64 (87)
T PF10883_consen 53 VKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHhHH
Confidence 345554444433
No 429
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=44.27 E-value=2.9e+02 Score=26.34 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=17.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 015739 229 SARRSRKRKQ-AHMQELELQVERLKGENATLY 259 (401)
Q Consensus 229 SARRSR~RKk-~~L~eLE~qV~~Le~EN~~L~ 259 (401)
|||..+-++. ..+.+|+.+++.|..||..|+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332 355666666666666666554
No 430
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.26 E-value=2.3e+02 Score=27.65 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
-+-+.+.|....++.++|+.+...|+.+.+.|+.++..+
T Consensus 104 ~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 104 IENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666666666555555555544
No 431
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=44.25 E-value=72 Score=33.99 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYK--QFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~--qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.+||.+++.++.....+.. .-..+..++..+..+-..|+..++-|+.
T Consensus 172 l~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 221 (475)
T PF10359_consen 172 LDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLEN 221 (475)
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766665555432 1122333343333344444444444443
No 432
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=44.19 E-value=2.1e+02 Score=30.31 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEAN--TNNRVLKSDVEAL 286 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~--~ENr~LKaqve~L 286 (401)
+..++.++..++.+...|..++..|++++..+. ..|.-|.+|++.|
T Consensus 94 ~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyL 141 (390)
T PRK10920 94 LKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 344455566666666777777777777776665 2245666666666
No 433
>PRK14154 heat shock protein GrpE; Provisional
Probab=44.14 E-value=1.7e+02 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
+.+|+.++..+..+...++++..
T Consensus 68 ~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 68 VDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 434
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=44.08 E-value=1.5e+02 Score=30.59 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEAN--TNNRVLKSDVEAL 286 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~--~ENr~LKaqve~L 286 (401)
.++..+..|+.+...+..++..+++++..+. ..+.-+.+|++.|
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 3444455555555555566666665555543 3344466666665
No 435
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.03 E-value=2.4e+02 Score=25.45 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHH
Q 015739 220 IRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDA---------AQQYKEANTNNRVLKS 281 (401)
Q Consensus 220 ~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L---------~qq~~~l~~ENr~LKa 281 (401)
+--+|-+.|.||--+.|..+ +.++.++..+..-...+..++..+ +.+|..+..+-..++.
T Consensus 35 e~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 35 EYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 34567788888887777666 577777777766665555555443 3455555555444433
No 436
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=44.01 E-value=1.7e+02 Score=29.97 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+|+--||.+++....|..+|..|+..|+.+...+.++=+..|..++-||.-|
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5777888999999999999999988887766555555555555555555544
No 437
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.00 E-value=19 Score=39.05 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.7
Q ss_pred cCCCCcccccCCCC
Q 015739 343 ANVSPTLTVPGNGA 356 (401)
Q Consensus 343 ~~~s~~~~~~g~~a 356 (401)
..+...+.++|-=+
T Consensus 117 ak~~dn~~f~grL~ 130 (489)
T PF11853_consen 117 AKATDNVSFTGRLS 130 (489)
T ss_pred cccCCCeEEEEEEe
Confidence 34444555555544
No 438
>PF15556 Zwint: ZW10 interactor
Probab=43.96 E-value=3.4e+02 Score=27.02 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 229 SARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+..+.|.-.+++.-.-|..+..|..-..+++.+..-.++++..+..|=..||.++..-+.|++.-+-.+.
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLq 186 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQ 186 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444455555555555566666666666666666777777777777665554433
No 439
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.95 E-value=1.4e+02 Score=33.17 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
|-++.+..|..++..++.+...+..+...+-+.+.....-.+.|.++.++|+.|-.-.
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666667666777777777777777765433
No 440
>PTZ00464 SNF-7-like protein; Provisional
Probab=43.85 E-value=2.4e+02 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
+..| .+-..++.+...|..++..+.+....+
T Consensus 64 l~~L-K~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 64 MQLL-QQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 445556666667777776666665554
No 441
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=43.70 E-value=2e+02 Score=26.91 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
..++..++.+...|++.+..-..++.
T Consensus 85 ~~~~~~~e~~~a~l~~~l~~~~~~ia 110 (158)
T PF09486_consen 85 EERVRAAEAELAALRQALRAAEDEIA 110 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344333333333333
No 442
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.57 E-value=1.1e+02 Score=35.16 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQEL-----------------ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eL-----------------E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
+..-.|++|---|.|.+..+.+- .+..+.|+ +.+.|..++..+++++..+.-+-..|+.+++
T Consensus 169 ~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E 247 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIE 247 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445677766676666655431 12223333 4457888888999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 015739 285 ALRAKVRLAED 295 (401)
Q Consensus 285 ~Lrakvk~aE~ 295 (401)
.||+.++.+++
T Consensus 248 ~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 248 DLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHH
Confidence 99999887774
No 443
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.53 E-value=3.8e+02 Score=30.79 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 232 RSRKRKQAHMQELELQVERLKGENA-------TLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~EN~-------~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
++|.+-...+..|.....+|+.+.. .+..+|....+.+.....+-..|+.+
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~E 564 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRE 564 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555555555555555555544443 34444444333333333333444443
No 444
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.48 E-value=1.2e+02 Score=31.15 Aligned_cols=86 Identities=17% Similarity=0.320 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELEL-------QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~-------qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.....|+.-++.+-+--++-|.-||-+|+-||. +|+.-+.+...|.+++..|.+.+..+..-+..|--++..-
T Consensus 14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 456677778888888888889999999999984 4555556666788888888888888888888888888877
Q ss_pred HHHHHHHHhHhhh
Q 015739 287 RAKVRLAEDVVSV 299 (401)
Q Consensus 287 rakvk~aE~lv~~ 299 (401)
..+|..+|..+..
T Consensus 94 e~qv~~lEgQl~s 106 (307)
T PF10481_consen 94 ESQVNFLEGQLNS 106 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 7888877776554
No 445
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=43.47 E-value=2.5e+02 Score=25.37 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 273 NTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 273 ~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
..|=..+..+...|..++..++.|
T Consensus 66 ~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 66 EQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555666665555543
No 446
>PRK15396 murein lipoprotein; Provisional
Probab=43.34 E-value=1.7e+02 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
.++.|..+|+.|..+-.+|...+..++....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444433
No 447
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.27 E-value=2e+02 Score=30.17 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQ------FTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~q------L~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+.+++.++..|+.....|.+. -....+.+..+...-..|++++..|..+++.+++.+..
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555554444331 11234566677777778888888888888877766665
No 448
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.14 E-value=3.1e+02 Score=33.33 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 229 SARRSRKRKQAHMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
.|++....-++++++++..+...+.+...+..++..+
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a 908 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEA 908 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555544444444444444444333
No 449
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=43.01 E-value=1.3e+02 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNR 277 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr 277 (401)
|+.|-..|..++....+++..|..||+
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 334444444444444444444444444
No 450
>PF13166 AAA_13: AAA domain
Probab=42.99 E-value=3.7e+02 Score=29.39 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+..+...+..+..+...+..++..+..+...+..+-..++.++..|++++...+..+.+
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 463 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADR 463 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444555555555555555666666666666666666667777777666544444333
No 451
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=42.77 E-value=1.4e+02 Score=32.38 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELE----------LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 237 Kk~~L~eLE----------~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+++|+++|+ .|..+-.-||..|..++..-.+.+.....||++|.+.-++|.-++
T Consensus 416 RrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRL 479 (593)
T KOG4807|consen 416 RRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRL 479 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 345666655 344555568888999998888888999999999999999998776
No 452
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.76 E-value=3.9e+02 Score=31.84 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDA-----AQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L-----~qq~~~l~~ENr~LKaqve~ 285 (401)
|....-|-+.||+--+-+++|+.+|-+++|.+-..|+...+.|++=+... ++-...++.|-++||.++.+
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577888888888888888888888888888888877766544432 22223334445555554443
No 453
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.60 E-value=1.9e+02 Score=24.12 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.+||.++..|+..-+--.+-+..|+.. =.+.+..++.++.+++.+-
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~-------laEq~~~i~k~q~qlr~L~ 49 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDA-------LAEQQLVIDKLQAQLRLLT 49 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 467777776665544443333333222 1334455677777776554
No 454
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.45 E-value=1.3e+02 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN 276 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN 276 (401)
|=.||++++-.++-+..|--.|. -+.|+..|..++..+..+......+.
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33577777654433333333332 23445666666665555554444333
No 455
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.18 E-value=2.5e+02 Score=31.68 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=4.5
Q ss_pred cccccccccc
Q 015739 304 CGLNQLLQSH 313 (401)
Q Consensus 304 ~~~n~l~~~~ 313 (401)
|-..++++..
T Consensus 320 CRvRP~~~~e 329 (670)
T KOG0239|consen 320 CRVRPLLPSE 329 (670)
T ss_pred EEecCCCccc
Confidence 5444444433
No 456
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=42.17 E-value=1e+02 Score=29.60 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.-.++..|..++..|+.+++.-++||.-+.|+
T Consensus 128 sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDI 159 (179)
T PF13942_consen 128 SDSELDALRQQQQRLQYQLDTTTRKLENLTDI 159 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455666666777777777777777666655
No 457
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.15 E-value=4.3e+02 Score=29.64 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 252 KGENATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 252 e~EN~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
+.+-..|++++..|..++.....+|..|
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~L 113 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQL 113 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666555555555
No 458
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.07 E-value=2.1e+02 Score=27.70 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+..+..||.++..|..+-..|..+.+....+...+...=..+..+...|...++....-|.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.80 E-value=1.5e+02 Score=25.79 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
-..-||.|+.-.-=|+...+.|+.--++|+.|...-.++|..+.
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777765554444444444444444444444444444443
No 460
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=41.80 E-value=3.3e+02 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 015739 275 NNRVLKSDVEALRAKVRLAEDVVSVGSLTC 304 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~aE~lv~~~~~t~ 304 (401)
+....+.++..++++++.++..+....+..
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~~~l~~~~i~A 209 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAEALLELTYVKA 209 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCEEEC
Confidence 345566777788888888877766655544
No 461
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.73 E-value=1.4e+02 Score=27.23 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAK 289 (401)
Q Consensus 277 r~LKaqve~Lrak 289 (401)
.+|..+++.+.++
T Consensus 123 ~~L~~k~~~~~~~ 135 (144)
T PRK14011 123 KELEKRAQAIEQR 135 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 3355555555443
No 462
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.71 E-value=2.5e+02 Score=26.71 Aligned_cols=12 Identities=0% Similarity=0.111 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQY 269 (401)
Q Consensus 258 L~~qL~~L~qq~ 269 (401)
+...+..|..++
T Consensus 111 ~~~~v~~l~~~l 122 (219)
T TIGR02977 111 VEETLAKLQEDI 122 (219)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 463
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=41.67 E-value=2e+02 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 015739 278 VLKSDVEALRAKVR 291 (401)
Q Consensus 278 ~LKaqve~Lrakvk 291 (401)
.++.++.+|+.+++
T Consensus 157 e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 157 ELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 464
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=41.64 E-value=2.5e+02 Score=28.48 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
..|+.|+++.+....-+.+.-.-..|..||+++..++.++.....+|..++++.
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 345556677777754443333344789999999999999999988998887664
No 465
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.46 E-value=53 Score=33.08 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
-++.|+.++..|+.||.+|+.++..++
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666655443
No 466
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.42 E-value=2.8e+02 Score=31.53 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+|..+++++....++|++.+...++++..|+.+=..-..++++|++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555554444444444555543
No 467
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.40 E-value=3.2e+02 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNN 276 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN 276 (401)
++|..++..+..+...+..++..+......+..+.
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33333333333333333333433433333333333
No 468
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.26 E-value=55 Score=35.59 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+.+|..++.+|...|..|...|...++++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 31 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKL 31 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777766665444433
No 469
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=41.00 E-value=98 Score=33.02 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQ--QYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~q--q~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.-++.++.+|+.+...+..++..+.- .-..+..+=..|..++..|++++..++.++..
T Consensus 166 ~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 166 ELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544444331 22223344444445555555555555544444
No 470
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=40.86 E-value=66 Score=36.78 Aligned_cols=66 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCchhhhhhcCCCcCCCCChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 191 SADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 191 S~~~Sdddd~e~eag~~e~~~~~~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
+..+.|++|.|.++ .-.--.+||-. +||..+-..+..+++.++.+|.....|+.+|++++.
T Consensus 88 a~~pyD~eDeEAd~----------Iy~sid~rld~---------rrK~rre~k~ke~iE~y~~e~pkv~~QFaDLKr~La 148 (913)
T KOG0495|consen 88 ASAPYDDEDEEADA----------IYDSIDLRLDE---------RRKERREKKLKEEIEKYRKENPKVQQQFADLKRKLA 148 (913)
T ss_pred cCCCCccccHHHHH----------HHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHh
Q ss_pred HHHHH
Q 015739 271 EANTN 275 (401)
Q Consensus 271 ~l~~E 275 (401)
.+..+
T Consensus 149 tvTe~ 153 (913)
T KOG0495|consen 149 TVTED 153 (913)
T ss_pred hcCHH
No 471
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.65 E-value=2.9e+02 Score=25.22 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+++=..++..|+.....-...++.+.++.+.+..++..|+.++......+...++-+..
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=40.63 E-value=93 Score=30.03 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENA-------TLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~-------~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
|.+|+--.+....+++.|+..-. +...++..+++.|..+ |..|+.++..|
T Consensus 113 R~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~l---N~~L~~ELP~L 169 (211)
T cd07588 113 RGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEEL---NTELHEELPAL 169 (211)
T ss_pred HhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHH---HHHHHHHhHHH
No 473
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=40.54 E-value=50 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 269 YKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 269 ~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
++.+..||..||.+++.|.+.++....
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.37 E-value=1.6e+02 Score=32.97 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY--KEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~--~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+++.-.+....-..-++.|++|+..|+.+-.....++...+++. ..+..|-..+..++.+|++++..++....
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~ 328 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREA 328 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.32 E-value=1.9e+02 Score=27.92 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLT 303 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t 303 (401)
..+..||.+|+.|+..-..+...+..-.++.-.+..+=..|++++.+|..||...=.++-+...|
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~ 143 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKT 143 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
No 476
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=40.31 E-value=1.3e+02 Score=30.99 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
|++..+.+++|+.+.+.|..+|...+..|..|..++..+..-=.-|+..+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
No 477
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=40.30 E-value=56 Score=32.70 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.....+..||+.|++++.++++....+ ..|++|..+|+.-+...+..
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~----~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEV----ESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCcccc
No 478
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=40.13 E-value=19 Score=32.68 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~E 275 (401)
.|-.++||+..-..+..+++..+.+|-.+..|+.+|++.+..+..+
T Consensus 74 ~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~e 119 (133)
T PF06424_consen 74 RRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEE 119 (133)
T ss_pred HHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHH
No 479
>PF14303 NAM-associated: No apical meristem-associated C-terminal domain
Probab=40.12 E-value=2.5e+02 Score=24.45 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCchhhhhhcCCCcCCCCChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 015739 184 RLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQ--VERLKGENATLYKQ 261 (401)
Q Consensus 184 ~~~~SgsS~~~Sdddd~e~eag~~e~~~~~~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~q--V~~Le~EN~~L~~q 261 (401)
+.+...+....+.++..+........... |...|+.|+++++-......-..+.........+ ...+..+...+..+
T Consensus 33 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~R-P~G~K~AK~k~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (154)
T PF14303_consen 33 KPTSNSSSGSSSSSSNSDSSPSSSSPSKR-PIGRKKAKEKLKKGLDKLEELKEEEDDWKEKKEKEEQEKAMKEIAEQEKE 111 (154)
T ss_pred ccCCCcCCCCCCCCCccccccccccccCC-CccHHHHHHHHHcchHHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---HHhHHHHHHHHHH
Q 015739 262 FTDAAQQYKEAN---TNNRVLKSDVEAL 286 (401)
Q Consensus 262 L~~L~qq~~~l~---~ENr~LKaqve~L 286 (401)
...+.++...+. .++++|..++..|
T Consensus 112 ~~~~~~~~~~~~~~~~e~~IM~~D~s~m 139 (154)
T PF14303_consen 112 KNEIEKEKAEAEERKEENKIMSKDTSGM 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccC
No 480
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=40.06 E-value=2e+02 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQE----LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 228 ESARRSR~RKk~~L~e----LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
+|+-..-+||.-+.++ ++.+++.|+.++..|..++.+++.++...+.-|.++++-.+.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEk 231 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEK 231 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 481
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.94 E-value=4.3e+02 Score=27.63 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 015739 211 TDHPIDLKRIRRMVSNRESARRSRKRK-------------------------QAHMQELELQVERLKGENATLYKQFT-- 263 (401)
Q Consensus 211 ~~~~~e~KR~RR~lsNRESARRSR~RK-------------------------k~~L~eLE~qV~~Le~EN~~L~~qL~-- 263 (401)
+++-...+..++.+..=+...+....+ +..+..|+.+++.|+.+-.++..++.
T Consensus 271 ~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 271 TDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred cccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 264 -DAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 264 -~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
....++..+..+-...+...+.|.++++.++
T Consensus 351 ~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 351 PEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.91 E-value=3.4e+02 Score=25.91 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++|..++...-+.|.+.|..=...+.+.|.++..-+.+-..+..+...--++... ..++.=.+.+.+++..++.-
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e-----~~~~~a~~ea~~~l~~Ae~~ 157 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAE-----AERAAIEASLEKKLKEAEAR 157 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 015739 297 VSV 299 (401)
Q Consensus 297 v~~ 299 (401)
+..
T Consensus 158 I~~ 160 (204)
T PRK09174 158 IAA 160 (204)
T ss_pred HHH
No 483
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.52 E-value=1.2e+02 Score=30.06 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+++.++..|+.+...|.+++..++.+|..+.++-.-+|.+.++=+..++
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.38 E-value=2.1e+02 Score=23.40 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTD--------AAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~--------L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.+++.|..+-=.|+-...-|..++.. +..+...+..+...|+.++..++..|..++.-+.
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.25 E-value=1.8e+02 Score=24.78 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQY--KEANTNNRVLKSDVEA 285 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~--~~l~~ENr~LKaqve~ 285 (401)
.+.-+--++.+++.+|..|.++...+..+. .+.+.+|...|++.++
T Consensus 17 i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 17 ILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 486
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.18 E-value=3.6e+02 Score=32.17 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+|+++|--.--+-|+.-..|-++.|.++..-|+.+.-+-+--..+...|++....+...+.+|.-+++-|++...
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=39.06 E-value=2.5e+02 Score=28.54 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ------FTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~q------L~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
....+..+++.+.++. ..+-+-|..+.+.|+.+...|+.. ...+.....++..+.+.||.+...|+
T Consensus 151 ~ekd~~i~~~~~~~e~--------d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~ 222 (264)
T PF07246_consen 151 EEKDQLIKEKTQEREN--------DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLE 222 (264)
T ss_pred HHHHHHHHHHhhchhh--------hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHH
Q ss_pred HHHHHHHhHhhh
Q 015739 288 AKVRLAEDVVSV 299 (401)
Q Consensus 288 akvk~aE~lv~~ 299 (401)
.+++.+..-..+
T Consensus 223 ~el~~aK~~~~~ 234 (264)
T PF07246_consen 223 HELSDAKEDMIR 234 (264)
T ss_pred HHHHHHHHHHHH
No 488
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=39.04 E-value=62 Score=34.51 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 232 RSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA-------------NTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l-------------~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
|.=+++.++..|++.+-+.|+..|..|..+++.|+.+.... ...++.++.+.+.|....+..+.+
T Consensus 283 r~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~~l~~~~~s~~~~ 360 (411)
T KOG1318|consen 283 RELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESDSLENEQQSQETL 360 (411)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcchhhhccccccccc
No 489
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.94 E-value=2.2e+02 Score=27.52 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
+..+..+-..|-.|+.....|..++.++-.....-...+..|+.+|..|.+.++.++.-+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
No 490
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.64 E-value=2e+02 Score=23.38 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEA---NTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l---~~ENr~LKaqve~Lrakvk~a 293 (401)
+|..+|..+..+...|.+.+...-.++..+ ...++..|.+.+.|...++.+
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~ 83 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEA 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
No 491
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=38.34 E-value=1.8e+02 Score=27.98 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELE-------------------LQVERLKGENATLYKQFTDAAQQYKEANTN 275 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE-------------------~qV~~Le~EN~~L~~qL~~L~qq~~~l~~E 275 (401)
+..||+-.-=..+|.||| .+|++|+.-.+.++.++.+|+.++.....+
T Consensus 108 q~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~ 174 (179)
T PF14723_consen 108 QQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQ 174 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.24 E-value=89 Score=32.48 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
.+...|.++-++|+.||..|..++. ++..+..||..|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~----~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK----SYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
No 493
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.22 E-value=3.6e+02 Score=32.81 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
....|+.--.-+--++.+.+-.+++..+.+|+..+..++.|-.+..+.+..+......+...=..|++++++++..+...
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H
Q 015739 294 E 294 (401)
Q Consensus 294 E 294 (401)
.
T Consensus 597 ~ 597 (1293)
T KOG0996|consen 597 R 597 (1293)
T ss_pred h
No 494
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=1.9e+02 Score=32.94 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 225 SNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 225 sNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
++..=+.++..-=|.+++..+.++.+++.....+..++....++...++.|+..|+..+++++
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 495
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=38.18 E-value=3.9e+02 Score=26.23 Aligned_cols=86 Identities=9% Similarity=0.218 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q 015739 213 HPIDLKRIRRMVSNRESARRSRKRKQAH--MQELELQVERLKGENATLYKQFTDAAQQ-YKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 213 ~~~e~KR~RR~lsNRESARRSR~RKk~~--L~eLE~qV~~Le~EN~~L~~qL~~L~qq-~~~l~~ENr~LKaqve~Lrak 289 (401)
+.++..+.|+++.+|.-.=-+.++|... -++|+...+.+....+.....+..+... ...+..=...+.+|++..++-
T Consensus 126 dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~qa 205 (223)
T cd07614 126 DLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQA 205 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHhh
Q 015739 290 VRLAEDVVS 298 (401)
Q Consensus 290 vk~aE~lv~ 298 (401)
...+++++.
T Consensus 206 ~eiL~~l~~ 214 (223)
T cd07614 206 VQILDELAE 214 (223)
T ss_pred HHHHHHHHH
No 496
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.93 E-value=2.3e+02 Score=32.36 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 231 RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.|.++.....-.+++.-++.|+.+-..+..+...+.+....+....+.|+.+.+.|+++.+....
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~ 569 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.77 E-value=2.5e+02 Score=32.10 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 231 RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.|.+......-.+++.-++.|+.+..++..+...+.+....+....+.|+.+.+.|+++-+....
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~ 564 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKL 564 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=37.75 E-value=4.1e+02 Score=26.13 Aligned_cols=86 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q 015739 213 HPIDLKRIRRMVSNRESARRSRKRKQAH--MQELELQVERLKGENATLYKQFTDAAQQ-YKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 213 ~~~e~KR~RR~lsNRESARRSR~RKk~~--L~eLE~qV~~Le~EN~~L~~qL~~L~qq-~~~l~~ENr~LKaqve~Lrak 289 (401)
+.++..+.|+++.||.-.=-+.++|... -+|++.-...++.-.......+..+... ...+..=...|.+|++..++-
T Consensus 126 dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~Yh~~a 205 (223)
T cd07615 126 DLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALDYHRQS 205 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHhh
Q 015739 290 VRLAEDVVS 298 (401)
Q Consensus 290 vk~aE~lv~ 298 (401)
...++++..
T Consensus 206 ~eiL~~l~~ 214 (223)
T cd07615 206 TEILEDLQS 214 (223)
T ss_pred HHHHHHHHH
No 499
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=37.72 E-value=2.2e+02 Score=29.93 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
++.++.+..++..|+.|--..+.+-.........+..+|.+--.+++.|+-+++++|-+|.
T Consensus 249 K~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcR 309 (391)
T KOG1850|consen 249 KQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCR 309 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 500
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.48 E-value=2.9e+02 Score=27.51 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 232 RSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|.|..||.-.++|...+..-+.+...|..++..+++.. +.=|+.++++++.. ++++..|
T Consensus 153 K~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~F-e~~K~~e 211 (240)
T cd07667 153 KKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERW-QNNKRQD 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHH
Done!