Query 015739
Match_columns 401
No_of_seqs 213 out of 885
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2.5E-14 8.7E-19 108.2 6.4 52 218-269 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1E-11 3.5E-16 95.8 9.1 53 217-269 1-53 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 4.4E-11 1.5E-15 91.4 9.0 50 218-267 1-50 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 4.5E-11 1.6E-15 92.7 6.8 48 222-269 13-60 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.1E-10 3.7E-15 89.6 7.6 50 218-267 1-50 (62)
6 1gd2_E Transcription factor PA 98.9 4E-09 1.4E-13 83.6 8.4 58 220-291 10-67 (70)
7 1ci6_A Transcription factor AT 98.9 4.8E-09 1.6E-13 81.1 7.2 49 218-266 2-50 (63)
8 1hjb_A Ccaat/enhancer binding 98.5 9.8E-07 3.4E-11 72.5 9.9 50 215-264 12-61 (87)
9 1gu4_A CAAT/enhancer binding p 98.4 1E-06 3.5E-11 71.1 9.7 52 215-266 12-63 (78)
10 3a5t_A Transcription factor MA 98.4 1.3E-08 4.3E-13 86.7 -2.8 64 214-291 33-96 (107)
11 2wt7_B Transcription factor MA 98.2 1E-05 3.6E-10 66.9 9.9 51 214-264 23-73 (90)
12 2oqq_A Transcription factor HY 96.9 0.0019 6.4E-08 46.7 6.0 39 238-283 2-40 (42)
13 1skn_P DNA-binding domain of S 96.3 0.0018 6.1E-08 53.7 2.6 33 214-246 58-90 (92)
14 3hnw_A Uncharacterized protein 95.6 0.083 2.8E-06 46.3 10.1 60 236-295 72-131 (138)
15 1deb_A APC protein, adenomatou 95.2 0.059 2E-06 40.5 6.8 47 241-287 5-51 (54)
16 2jee_A YIIU; FTSZ, septum, coi 95.0 0.17 6E-06 41.1 9.4 51 241-291 22-72 (81)
17 2jee_A YIIU; FTSZ, septum, coi 94.0 0.44 1.5E-05 38.7 9.7 53 239-291 6-58 (81)
18 2w6a_A ARF GTPase-activating p 93.6 0.26 9.1E-06 38.1 7.3 41 241-281 22-62 (63)
19 3u1c_A Tropomyosin alpha-1 cha 93.3 2 6.8E-05 35.5 12.9 63 233-295 38-100 (101)
20 3oja_B Anopheles plasmodium-re 93.0 0.62 2.1E-05 47.1 11.3 16 277-292 561-576 (597)
21 3s9g_A Protein hexim1; cyclin 92.8 0.39 1.4E-05 40.5 7.9 47 242-288 40-93 (104)
22 3hnw_A Uncharacterized protein 92.4 1.1 3.7E-05 39.2 10.6 52 239-290 82-133 (138)
23 3u59_A Tropomyosin beta chain; 91.8 3.7 0.00013 33.6 12.6 14 281-294 86-99 (101)
24 2dfs_A Myosin-5A; myosin-V, in 91.8 1.6 5.4E-05 49.1 13.5 55 240-294 992-1050(1080)
25 3a7p_A Autophagy protein 16; c 91.4 3.9 0.00013 36.7 13.0 73 222-296 72-144 (152)
26 1go4_E MAD1 (mitotic arrest de 91.3 0.58 2E-05 39.4 7.2 23 272-294 73-95 (100)
27 3m0d_C TNF receptor-associated 90.8 2.4 8.2E-05 32.5 9.7 61 237-297 4-64 (65)
28 1hjb_A Ccaat/enhancer binding 90.5 2.5 8.4E-05 34.5 10.1 37 263-299 39-75 (87)
29 2zxx_A Geminin; coiled-coil, c 90.4 1.1 3.6E-05 36.4 7.7 44 253-296 34-77 (79)
30 2c9l_Y EB1, zebra, BZLF1 trans 90.3 1.4 4.8E-05 33.7 7.8 37 222-258 5-41 (63)
31 1ci6_A Transcription factor AT 89.8 0.87 3E-05 34.7 6.5 39 260-298 23-61 (63)
32 1gu4_A CAAT/enhancer binding p 89.5 2.7 9.3E-05 33.6 9.4 33 264-296 40-72 (78)
33 1p9i_A Cortexillin I/GCN4 hybr 89.4 0.42 1.5E-05 31.9 3.8 22 269-290 8-29 (31)
34 3he5_A Synzip1; heterodimeric 89.0 1.5 5.1E-05 31.9 6.7 44 240-290 4-47 (49)
35 3m48_A General control protein 88.9 0.44 1.5E-05 32.8 3.7 26 241-266 2-27 (33)
36 2kz5_A Transcription factor NF 88.9 0.033 1.1E-06 46.2 -2.2 26 214-239 62-87 (91)
37 3swy_A Cyclic nucleotide-gated 88.8 1.6 5.6E-05 31.9 6.9 45 243-290 2-46 (46)
38 4h22_A Leucine-rich repeat fli 88.7 1.3 4.6E-05 37.4 7.4 82 215-299 7-90 (103)
39 3cve_A Homer protein homolog 1 88.7 2.2 7.6E-05 33.9 8.2 49 242-290 3-51 (72)
40 2oxj_A Hybrid alpha/beta pepti 88.4 0.58 2E-05 32.4 4.1 26 240-265 2-27 (34)
41 3oja_B Anopheles plasmodium-re 88.4 4.5 0.00015 40.8 12.4 39 251-289 521-559 (597)
42 2eqb_B RAB guanine nucleotide 88.2 2.9 0.0001 35.0 9.1 49 241-289 14-62 (97)
43 1kd8_B GABH BLL, GCN4 acid bas 88.0 0.87 3E-05 31.9 4.8 27 240-266 2-28 (36)
44 2dfs_A Myosin-5A; myosin-V, in 88.0 4.9 0.00017 45.2 13.5 59 238-296 983-1045(1080)
45 3swf_A CGMP-gated cation chann 87.7 2.3 7.9E-05 34.0 7.7 49 242-293 3-51 (74)
46 1t2k_D Cyclic-AMP-dependent tr 87.6 1.6 5.4E-05 32.8 6.5 37 261-297 23-59 (61)
47 2wt7_A Proto-oncogene protein 87.5 1.6 5.3E-05 33.2 6.5 39 260-298 23-61 (63)
48 1gd2_E Transcription factor PA 87.5 1.1 3.8E-05 35.3 5.8 27 240-266 37-63 (70)
49 3cvf_A Homer-3, homer protein 87.2 1.4 4.9E-05 35.6 6.4 49 242-290 9-57 (79)
50 2v66_B Nuclear distribution pr 86.6 14 0.00048 31.4 12.8 54 240-293 36-89 (111)
51 3mq7_A Bone marrow stromal ant 86.3 3.3 0.00011 35.8 8.5 44 243-286 61-104 (121)
52 3o0z_A RHO-associated protein 86.1 10 0.00034 34.5 12.0 62 221-289 72-133 (168)
53 3m91_A Proteasome-associated A 85.9 3 0.0001 31.1 7.1 41 239-286 9-49 (51)
54 2v71_A Nuclear distribution pr 85.8 14 0.00049 34.0 13.1 53 241-293 90-142 (189)
55 3c3f_A Alpha/beta peptide with 85.1 1.1 3.9E-05 30.9 4.1 26 240-265 2-27 (34)
56 3vmx_A Voltage-gated hydrogen 85.0 2.7 9.1E-05 31.2 6.3 37 245-281 3-39 (48)
57 3a7p_A Autophagy protein 16; c 84.8 6.3 0.00021 35.4 9.9 9 244-252 73-81 (152)
58 3efg_A Protein SLYX homolog; x 84.0 2.7 9.3E-05 33.5 6.6 48 239-293 14-61 (78)
59 1kd8_A GABH AIV, GCN4 acid bas 83.8 1.5 5.3E-05 30.6 4.3 27 240-266 2-28 (36)
60 3c3g_A Alpha/beta peptide with 83.8 1.4 4.9E-05 30.3 4.1 26 241-266 2-27 (33)
61 3a2a_A Voltage-gated hydrogen 83.3 2.9 0.0001 31.9 6.0 38 244-281 9-46 (58)
62 2bni_A General control protein 83.0 1.4 4.9E-05 30.5 3.9 27 240-266 2-28 (34)
63 1ic2_A Tropomyosin alpha chain 82.8 5.3 0.00018 31.4 7.8 56 239-294 20-75 (81)
64 1uo4_A General control protein 82.8 1.5 5.1E-05 30.4 3.9 27 240-266 2-28 (34)
65 2xdj_A Uncharacterized protein 82.5 8 0.00027 31.2 8.8 46 241-286 22-67 (83)
66 3bas_A Myosin heavy chain, str 82.5 17 0.00059 29.1 12.8 53 238-290 34-86 (89)
67 1jnm_A Proto-oncogene C-JUN; B 82.4 1.7 5.8E-05 32.7 4.6 37 260-296 22-58 (62)
68 1i84_S Smooth muscle myosin he 82.2 8.8 0.0003 43.1 12.1 25 268-292 914-938 (1184)
69 2v4h_A NF-kappa-B essential mo 82.1 23 0.00078 30.2 12.6 69 226-294 32-103 (110)
70 4etp_A Kinesin-like protein KA 82.0 4.4 0.00015 40.7 8.7 49 238-286 9-57 (403)
71 3s9g_A Protein hexim1; cyclin 82.0 6.1 0.00021 33.3 8.1 30 238-267 64-93 (104)
72 2hy6_A General control protein 82.0 1.7 5.7E-05 30.1 3.9 27 240-266 2-28 (34)
73 3jsv_C NF-kappa-B essential mo 81.8 17 0.00057 30.3 10.6 71 224-294 8-81 (94)
74 1t6f_A Geminin; coiled-coil, c 81.8 2.1 7.3E-05 30.0 4.4 30 252-281 6-35 (37)
75 2wvr_A Geminin; DNA replicatio 81.5 9.7 0.00033 35.7 10.1 45 253-297 115-159 (209)
76 1nkp_B MAX protein, MYC proto- 81.1 1.9 6.4E-05 33.9 4.6 6 240-245 20-25 (83)
77 3m9b_A Proteasome-associated A 81.0 2 7E-05 41.2 5.6 31 238-268 53-83 (251)
78 3oja_A Leucine-rich immune mol 80.8 17 0.00058 36.0 12.4 29 264-292 439-467 (487)
79 2wq1_A General control protein 80.7 2.2 7.4E-05 29.4 4.1 25 241-265 2-26 (33)
80 3m0a_A TNF receptor-associated 80.7 16 0.00054 27.4 9.6 58 241-298 7-64 (66)
81 2ve7_C Kinetochore protein NUF 80.6 1.4 4.9E-05 41.6 4.4 33 215-247 117-149 (250)
82 2oa5_A Hypothetical protein BQ 80.4 5.9 0.0002 33.8 7.6 25 239-263 8-32 (110)
83 3iv1_A Tumor susceptibility ge 80.2 17 0.00059 29.2 9.9 64 234-297 13-76 (78)
84 2dgc_A Protein (GCN4); basic d 80.0 2.2 7.6E-05 32.6 4.5 31 260-290 30-60 (63)
85 4emc_A Monopolin complex subun 80.0 3.9 0.00013 37.9 6.9 18 246-263 20-37 (190)
86 2w83_C C-JUN-amino-terminal ki 79.9 14 0.00049 29.7 9.3 49 242-290 5-60 (77)
87 3vkg_A Dynein heavy chain, cyt 79.7 8.2 0.00028 48.3 11.5 51 246-296 2028-2078(3245)
88 3efg_A Protein SLYX homolog; x 79.4 5 0.00017 31.9 6.6 51 242-299 10-60 (78)
89 3o0z_A RHO-associated protein 79.3 23 0.00079 32.1 11.6 58 228-287 25-82 (168)
90 1wlq_A Geminin; coiled-coil; 2 79.3 15 0.0005 30.0 9.3 34 252-285 37-70 (83)
91 2xdj_A Uncharacterized protein 79.3 15 0.00052 29.6 9.4 25 241-265 29-53 (83)
92 3i00_A HIP-I, huntingtin-inter 78.9 11 0.00036 32.4 8.9 50 234-290 35-84 (120)
93 2yy0_A C-MYC-binding protein; 78.9 3.2 0.00011 30.9 4.9 18 246-263 19-36 (53)
94 3s4r_A Vimentin; alpha-helix, 78.4 16 0.00053 29.8 9.4 31 260-290 56-86 (93)
95 3a7o_A Autophagy protein 16; c 78.0 8.3 0.00029 30.8 7.3 49 240-288 26-74 (75)
96 1ic2_A Tropomyosin alpha chain 77.9 20 0.00067 28.1 9.6 46 247-292 21-66 (81)
97 3ghg_A Fibrinogen alpha chain; 77.7 7.4 0.00025 41.0 8.9 38 257-294 114-151 (562)
98 3u06_A Protein claret segregat 77.6 5.9 0.0002 39.9 8.0 46 241-286 12-57 (412)
99 1nlw_A MAD protein, MAX dimeri 77.2 4.4 0.00015 32.2 5.6 24 239-262 47-70 (80)
100 2yy0_A C-MYC-binding protein; 77.2 4.2 0.00014 30.2 5.1 27 255-281 21-47 (53)
101 1i84_S Smooth muscle myosin he 77.0 13 0.00044 41.8 11.3 18 276-293 915-932 (1184)
102 2v66_B Nuclear distribution pr 76.8 17 0.00058 30.9 9.4 57 229-285 46-102 (111)
103 2lw1_A ABC transporter ATP-bin 76.2 15 0.00052 29.2 8.6 59 238-296 21-85 (89)
104 1fmh_A General control protein 76.1 4.5 0.00016 27.3 4.5 26 241-266 3-28 (33)
105 3ghg_A Fibrinogen alpha chain; 75.6 13 0.00045 39.2 10.1 56 237-299 108-163 (562)
106 1joc_A EEA1, early endosomal a 75.4 17 0.00057 30.8 9.2 44 239-282 11-54 (125)
107 2oxj_A Hybrid alpha/beta pepti 75.2 4.4 0.00015 28.1 4.3 29 262-290 3-31 (34)
108 3mq7_A Bone marrow stromal ant 75.0 29 0.001 30.0 10.4 32 250-281 75-106 (121)
109 3oja_A Leucine-rich immune mol 74.6 23 0.0008 34.9 11.4 32 235-266 431-462 (487)
110 3m9b_A Proteasome-associated A 74.1 2.9 0.0001 40.2 4.5 42 245-286 53-94 (251)
111 4h22_A Leucine-rich repeat fli 74.1 12 0.00041 31.6 7.7 51 247-297 31-81 (103)
112 1a93_B MAX protein, coiled coi 74.0 4.5 0.00015 28.1 4.1 28 259-286 6-33 (34)
113 1dh3_A Transcription factor CR 72.5 3.5 0.00012 30.7 3.7 31 260-290 22-52 (55)
114 1wle_A Seryl-tRNA synthetase; 72.2 28 0.00095 36.1 11.6 27 271-297 120-146 (501)
115 3mq9_A Bone marrow stromal ant 71.7 72 0.0025 31.3 14.1 23 277-299 446-468 (471)
116 3q8t_A Beclin-1; autophagy, AT 71.5 40 0.0014 27.5 11.1 53 238-290 38-90 (96)
117 1am9_A Srebp-1A, protein (ster 71.0 6.1 0.00021 31.2 5.0 68 221-292 5-75 (82)
118 2i1j_A Moesin; FERM, coiled-co 70.3 3.3 0.00011 43.4 4.2 60 240-299 336-395 (575)
119 3m48_A General control protein 70.0 4.6 0.00016 27.8 3.5 27 263-289 3-29 (33)
120 1wle_A Seryl-tRNA synthetase; 70.0 35 0.0012 35.3 11.7 61 239-299 70-141 (501)
121 2r2v_A GCN4 leucine zipper; co 69.8 6.2 0.00021 27.3 4.1 27 240-266 2-28 (34)
122 2wuj_A Septum site-determining 69.6 3.7 0.00013 30.7 3.3 22 267-288 34-55 (57)
123 3ol1_A Vimentin; structural ge 68.4 36 0.0012 28.6 9.6 56 238-293 19-81 (119)
124 2fxo_A Myosin heavy chain, car 68.3 52 0.0018 27.8 10.6 55 242-296 37-98 (129)
125 1lwu_C Fibrinogen gamma chain; 68.2 13 0.00045 36.6 7.8 20 278-297 37-56 (323)
126 1wt6_A Myotonin-protein kinase 68.0 47 0.0016 26.9 9.9 57 226-292 14-70 (81)
127 3na7_A HP0958; flagellar bioge 67.9 37 0.0013 31.5 10.5 73 223-296 37-112 (256)
128 1nkp_A C-MYC, MYC proto-oncoge 67.7 14 0.00048 29.7 6.6 17 270-286 69-85 (88)
129 1m1j_B Fibrinogen beta chain; 67.7 82 0.0028 32.5 13.8 21 277-297 171-191 (464)
130 4emc_A Monopolin complex subun 67.6 18 0.00061 33.5 8.0 27 243-269 31-57 (190)
131 1am9_A Srebp-1A, protein (ster 67.6 25 0.00086 27.6 8.0 27 237-263 48-74 (82)
132 3htk_A Structural maintenance 67.6 23 0.00079 25.8 7.3 32 238-269 11-42 (60)
133 1dip_A Delta-sleep-inducing pe 66.7 5.8 0.0002 31.9 4.0 26 256-281 18-43 (78)
134 3u06_A Protein claret segregat 66.5 15 0.00051 37.1 7.9 43 249-291 6-48 (412)
135 1nkp_B MAX protein, MYC proto- 66.5 17 0.00059 28.3 6.8 14 240-253 48-61 (83)
136 2wuj_A Septum site-determining 66.3 5.7 0.0002 29.6 3.7 30 239-268 27-56 (57)
137 4ath_A MITF, microphthalmia-as 66.0 23 0.0008 28.7 7.5 43 237-290 37-79 (83)
138 4etp_A Kinesin-like protein KA 65.7 15 0.00051 36.8 7.7 33 240-272 4-36 (403)
139 1uii_A Geminin; human, DNA rep 65.7 36 0.0012 27.7 8.5 32 253-284 46-77 (83)
140 3he5_A Synzip1; heterodimeric 65.6 33 0.0011 24.9 7.3 11 248-258 5-15 (49)
141 1kd8_B GABH BLL, GCN4 acid bas 65.6 10 0.00034 26.6 4.5 29 263-291 4-32 (36)
142 2oqq_A Transcription factor HY 65.6 19 0.00066 25.9 6.1 21 240-260 18-38 (42)
143 1uix_A RHO-associated kinase; 65.4 35 0.0012 27.0 8.2 47 244-290 2-48 (71)
144 3he4_A Synzip6; heterodimeric 65.4 2.8 9.5E-05 31.2 1.8 25 242-266 20-44 (56)
145 1nkp_A C-MYC, MYC proto-oncoge 65.3 25 0.00084 28.2 7.5 21 271-291 63-83 (88)
146 2wt7_B Transcription factor MA 65.1 57 0.0019 26.8 10.3 54 231-291 29-86 (90)
147 2j5u_A MREC protein; bacterial 65.1 3 0.0001 39.3 2.4 38 251-292 24-61 (255)
148 3tnu_B Keratin, type II cytosk 65.0 50 0.0017 27.8 9.8 28 242-269 46-73 (129)
149 1dip_A Delta-sleep-inducing pe 64.4 3.9 0.00013 32.9 2.6 27 261-287 16-42 (78)
150 3tnu_A Keratin, type I cytoske 63.8 53 0.0018 27.7 9.8 16 247-262 53-68 (131)
151 2w83_C C-JUN-amino-terminal ki 63.3 14 0.00048 29.7 5.6 38 257-294 34-71 (77)
152 2ocy_A RAB guanine nucleotide 63.2 70 0.0024 28.5 10.8 32 266-297 107-138 (154)
153 3nmd_A CGMP dependent protein 62.9 25 0.00087 27.9 7.0 28 236-263 37-64 (72)
154 3c3f_A Alpha/beta peptide with 62.9 12 0.0004 26.0 4.3 29 262-290 3-31 (34)
155 2dq0_A Seryl-tRNA synthetase; 62.8 88 0.003 31.8 12.9 52 246-297 45-99 (455)
156 1go4_E MAD1 (mitotic arrest de 62.0 13 0.00045 31.1 5.5 47 261-310 13-59 (100)
157 3c3g_A Alpha/beta peptide with 61.6 13 0.00043 25.6 4.3 28 263-290 3-30 (33)
158 3mq9_A Bone marrow stromal ant 61.3 56 0.0019 32.1 10.9 36 258-293 434-469 (471)
159 3he5_B Synzip2; heterodimeric 61.2 39 0.0013 24.7 7.1 15 245-259 9-23 (52)
160 1ses_A Seryl-tRNA synthetase; 61.2 1E+02 0.0035 30.9 12.9 59 239-297 28-94 (421)
161 2oto_A M protein; helical coil 61.1 60 0.002 28.0 9.9 32 241-272 52-83 (155)
162 1wt6_A Myotonin-protein kinase 60.9 65 0.0022 26.1 10.3 48 224-271 23-70 (81)
163 2j5u_A MREC protein; bacterial 60.7 3 0.0001 39.3 1.6 40 241-284 21-60 (255)
164 1jcd_A Major outer membrane li 60.2 48 0.0016 24.7 7.7 27 240-266 5-31 (52)
165 3q0x_A Centriole protein; cent 59.7 36 0.0012 32.2 8.7 54 216-275 161-214 (228)
166 3m91_A Proteasome-associated A 59.6 40 0.0014 25.0 7.2 34 258-291 14-47 (51)
167 3bas_A Myosin heavy chain, str 58.6 68 0.0023 25.6 10.1 55 241-295 30-84 (89)
168 3bbp_D GRIP and coiled-coil do 58.2 9.1 0.00031 30.4 3.6 46 243-288 19-64 (71)
169 1gk7_A Vimentin; intermediate 58.1 13 0.00046 26.0 4.1 28 257-284 10-37 (39)
170 3vkg_A Dynein heavy chain, cyt 58.1 36 0.0012 42.9 10.4 72 222-293 2018-2103(3245)
171 3tnu_B Keratin, type II cytosk 57.9 78 0.0027 26.6 9.8 24 263-286 78-101 (129)
172 1gk6_A Vimentin; intermediate 57.4 43 0.0015 25.0 7.2 47 242-288 3-49 (59)
173 2e7s_A RAB guanine nucleotide 57.2 42 0.0014 29.5 8.0 50 241-290 34-83 (135)
174 1s1c_X RHO-associated, coiled- 57.0 47 0.0016 26.3 7.5 31 243-273 3-33 (71)
175 1deq_A Fibrinogen (alpha chain 56.9 35 0.0012 34.6 8.6 40 256-295 116-155 (390)
176 3e98_A GAF domain of unknown f 56.8 21 0.00073 33.5 6.7 50 241-294 67-116 (252)
177 3w03_C DNA repair protein XRCC 56.5 16 0.00054 33.6 5.5 30 240-269 153-182 (184)
178 1zme_C Proline utilization tra 56.4 9.7 0.00033 28.0 3.4 25 238-262 43-67 (70)
179 3ra3_B P2F; coiled coil domain 56.4 9.8 0.00033 24.8 2.9 19 273-291 6-24 (28)
180 1nlw_A MAD protein, MAX dimeri 55.9 40 0.0014 26.6 7.2 21 270-290 57-77 (80)
181 4b4t_K 26S protease regulatory 55.8 15 0.00053 37.0 5.9 15 277-291 73-87 (428)
182 2fic_A Bridging integrator 1; 55.7 51 0.0017 29.8 8.8 29 257-288 183-211 (251)
183 3qh9_A Liprin-beta-2; coiled-c 55.5 82 0.0028 25.5 8.9 28 239-266 26-53 (81)
184 4ati_A MITF, microphthalmia-as 55.4 9.1 0.00031 32.3 3.5 22 269-290 93-114 (118)
185 3i00_A HIP-I, huntingtin-inter 55.1 88 0.003 26.7 9.6 37 258-294 45-81 (120)
186 3qne_A Seryl-tRNA synthetase, 54.7 1E+02 0.0035 31.9 11.8 27 271-297 75-101 (485)
187 1fmh_A General control protein 54.7 19 0.00064 24.3 4.1 26 264-289 5-30 (33)
188 2lz1_A Nuclear factor erythroi 54.6 0.22 7.4E-06 41.3 -6.4 26 214-239 62-87 (90)
189 3plt_A Sphingolipid long chain 54.1 53 0.0018 31.2 8.9 66 218-288 93-159 (234)
190 1kd8_A GABH AIV, GCN4 acid bas 53.7 17 0.00059 25.4 4.0 28 264-291 5-32 (36)
191 2ve7_A Kinetochore protein HEC 53.6 25 0.00084 34.1 6.7 49 245-296 184-232 (315)
192 3ra3_A P1C; coiled coil domain 53.3 8.9 0.0003 25.0 2.3 19 250-268 4-22 (28)
193 2zvf_A Alanyl-tRNA synthetase; 53.1 11 0.00039 32.3 3.9 27 265-291 30-56 (171)
194 1hlo_A Protein (transcription 52.5 13 0.00045 28.9 3.8 57 228-288 18-78 (80)
195 2v4h_A NF-kappa-B essential mo 52.3 1.1E+02 0.0038 26.1 10.1 43 248-290 64-106 (110)
196 1m1j_A Fibrinogen alpha subuni 52.0 63 0.0022 33.7 9.6 57 240-299 101-157 (491)
197 2w6b_A RHO guanine nucleotide 51.6 64 0.0022 24.5 7.2 21 242-262 13-33 (56)
198 4b4t_K 26S protease regulatory 51.6 21 0.00072 36.0 6.0 45 251-295 40-84 (428)
199 2w6b_A RHO guanine nucleotide 51.2 53 0.0018 25.0 6.6 35 265-299 15-49 (56)
200 3u1c_A Tropomyosin alpha-1 cha 50.9 1E+02 0.0034 25.2 13.6 49 240-288 24-72 (101)
201 2hy6_A General control protein 50.9 24 0.00083 24.4 4.3 28 263-290 4-31 (34)
202 3u59_A Tropomyosin beta chain; 50.6 98 0.0034 25.0 13.6 52 239-290 23-74 (101)
203 2js5_A Uncharacterized protein 50.4 83 0.0028 24.9 8.0 24 242-265 6-29 (71)
204 2efr_A General control protein 49.8 1.4E+02 0.0048 26.5 11.7 45 238-282 104-148 (155)
205 2xv5_A Lamin-A/C; structural p 48.9 95 0.0033 24.3 8.7 48 234-288 7-54 (74)
206 4dzn_A Coiled-coil peptide CC- 48.8 43 0.0015 22.6 5.2 11 246-256 9-19 (33)
207 2fxo_A Myosin heavy chain, car 48.6 1.2E+02 0.0041 25.5 13.9 53 241-293 64-116 (129)
208 1lrz_A FEMA, factor essential 48.5 41 0.0014 33.0 7.5 60 239-299 247-306 (426)
209 2bni_A General control protein 48.4 22 0.00075 24.6 3.8 28 262-289 3-30 (34)
210 1ytz_T Troponin T; muscle, THI 48.2 69 0.0023 26.9 7.7 63 231-293 20-89 (107)
211 3htk_A Structural maintenance 48.2 75 0.0026 23.0 9.2 49 241-289 7-55 (60)
212 4gkw_A Spindle assembly abnorm 47.8 1.3E+02 0.0046 26.6 9.7 14 285-298 102-115 (167)
213 1p9i_A Cortexillin I/GCN4 hybr 47.0 26 0.0009 23.3 3.9 25 242-266 2-26 (31)
214 1a93_B MAX protein, coiled coi 46.7 29 0.00099 24.0 4.2 21 243-263 11-31 (34)
215 3q0x_A Centriole protein; cent 45.8 73 0.0025 30.0 8.3 39 257-295 175-213 (228)
216 1uo4_A General control protein 45.7 26 0.00087 24.3 3.8 27 262-288 3-29 (34)
217 1hlo_A Protein (transcription 45.1 18 0.00061 28.2 3.4 23 238-260 56-78 (80)
218 2xv5_A Lamin-A/C; structural p 45.0 98 0.0034 24.3 7.7 36 244-279 3-38 (74)
219 3csx_A Putative uncharacterize 44.7 66 0.0023 26.0 6.8 11 215-225 18-28 (81)
220 1deq_A Fibrinogen (alpha chain 44.6 56 0.0019 33.2 7.7 45 239-290 113-157 (390)
221 1fmh_B General control protein 44.6 36 0.0012 22.9 4.3 23 267-289 8-30 (33)
222 4a3a_A Amphiphysin; structural 44.6 84 0.0029 29.1 8.6 52 234-288 139-197 (243)
223 3ra3_B P2F; coiled coil domain 44.5 18 0.00062 23.6 2.8 17 250-266 4-20 (28)
224 3nmd_A CGMP dependent protein 44.4 53 0.0018 26.1 6.0 22 265-286 45-66 (72)
225 1ik9_A DNA repair protein XRCC 44.3 1.6E+02 0.0053 27.2 10.2 16 85-100 59-74 (213)
226 1jcd_A Major outer membrane li 43.5 98 0.0034 23.0 7.7 21 247-267 5-25 (52)
227 2wq1_A General control protein 43.0 38 0.0013 23.2 4.3 26 264-289 4-29 (33)
228 3lay_A Zinc resistance-associa 42.7 66 0.0023 29.0 7.3 19 269-287 115-133 (175)
229 2er8_A Regulatory protein Leu3 42.5 13 0.00045 27.5 2.3 21 238-258 48-68 (72)
230 3lay_A Zinc resistance-associa 42.2 1.5E+02 0.0052 26.6 9.6 9 216-224 71-79 (175)
231 3cl3_D NF-kappa-B essential mo 42.1 9.5 0.00032 33.4 1.6 18 275-292 56-73 (130)
232 4dk0_A Putative MACA; alpha-ha 41.7 1.5E+02 0.005 27.8 9.9 42 262-303 117-158 (369)
233 3lss_A Seryl-tRNA synthetase; 41.6 93 0.0032 32.2 9.1 25 273-297 109-134 (484)
234 1m1j_B Fibrinogen beta chain; 41.0 1.9E+02 0.0064 29.9 11.2 64 235-298 131-199 (464)
235 3oa7_A Head morphogenesis prot 41.0 87 0.003 29.3 7.9 40 248-287 32-71 (206)
236 1zxa_A CGMP-dependent protein 40.8 50 0.0017 25.8 5.3 28 236-263 22-49 (67)
237 4dzo_A Mitotic spindle assembl 40.3 55 0.0019 27.9 6.0 21 240-260 5-25 (123)
238 2dq3_A Seryl-tRNA synthetase; 40.2 75 0.0026 31.8 8.0 59 241-299 32-100 (425)
239 3trt_A Vimentin; cytoskeleton, 40.2 1.2E+02 0.0041 23.0 9.2 15 276-290 58-72 (77)
240 2b9c_A Striated-muscle alpha t 40.0 1.9E+02 0.0065 25.2 12.4 75 218-298 37-111 (147)
241 1f5n_A Interferon-induced guan 39.7 1.8E+02 0.0063 30.5 11.1 7 227-233 496-502 (592)
242 4ath_A MITF, microphthalmia-as 39.5 62 0.0021 26.3 5.9 32 238-269 48-79 (83)
243 2p4v_A Transcription elongatio 39.3 1E+02 0.0035 26.8 7.9 20 280-299 52-71 (158)
244 3he5_B Synzip2; heterodimeric 39.2 96 0.0033 22.7 6.2 40 255-294 5-44 (52)
245 3he4_A Synzip6; heterodimeric 39.2 42 0.0014 24.9 4.4 31 268-298 25-55 (56)
246 1x8y_A Lamin A/C; structural p 38.9 1.4E+02 0.0049 23.5 10.4 52 237-288 26-77 (86)
247 3a5t_A Transcription factor MA 38.6 1.7 5.7E-05 36.9 -3.6 23 268-290 59-81 (107)
248 1j1d_B Troponin T, TNT; THIN f 38.5 1.7E+02 0.006 24.4 9.9 45 249-293 45-89 (106)
249 3ra3_A P1C; coiled coil domain 38.2 45 0.0015 21.7 3.9 22 271-292 4-25 (28)
250 1uii_A Geminin; human, DNA rep 38.2 1.6E+02 0.0055 23.9 8.8 23 265-287 51-73 (83)
251 2cly_A ATP synthase B chain, m 37.6 99 0.0034 28.8 7.8 40 241-280 117-156 (214)
252 4gkw_A Spindle assembly abnorm 37.4 1.2E+02 0.0042 26.9 7.9 18 267-284 140-157 (167)
253 1grj_A GREA protein; transcrip 37.3 1.3E+02 0.0045 26.0 8.2 51 241-291 11-70 (158)
254 3gpv_A Transcriptional regulat 36.7 71 0.0024 27.2 6.3 35 265-299 100-134 (148)
255 2aze_A Transcription factor DP 36.0 86 0.0029 28.1 6.8 44 221-268 8-51 (155)
256 1ik9_A DNA repair protein XRCC 35.6 2.5E+02 0.0084 25.9 10.1 27 238-264 138-164 (213)
257 1m1j_A Fibrinogen alpha subuni 35.2 1.2E+02 0.0042 31.5 8.6 58 235-299 107-164 (491)
258 3vem_A Helicase protein MOM1; 34.9 1.9E+02 0.0063 24.9 8.4 48 235-292 57-104 (115)
259 2f1m_A Acriflavine resistance 34.8 2.5E+02 0.0086 25.1 10.3 26 277-302 108-133 (277)
260 2l5g_A GPS2 protein, G protein 34.7 41 0.0014 23.7 3.5 21 239-259 15-35 (38)
261 2ocy_A RAB guanine nucleotide 34.7 2.5E+02 0.0084 25.0 12.9 25 275-299 109-133 (154)
262 2ve7_C Kinetochore protein NUF 33.8 23 0.00077 33.4 2.8 36 257-292 145-180 (250)
263 3fpp_A Macrolide-specific effl 33.8 1.5E+02 0.005 27.5 8.4 23 277-299 131-153 (341)
264 3rrk_A V-type ATPase 116 kDa s 33.8 2E+02 0.0069 27.2 9.6 28 241-268 228-255 (357)
265 2zvf_A Alanyl-tRNA synthetase; 33.6 55 0.0019 27.9 5.1 27 243-269 29-55 (171)
266 1fmh_B General control protein 33.6 95 0.0032 20.9 5.0 29 241-269 3-31 (33)
267 4avm_A Bridging integrator 2; 33.5 1.4E+02 0.0047 27.4 8.1 54 232-288 132-192 (237)
268 1d7m_A Cortexillin I; coiled-c 33.5 2.1E+02 0.0071 23.8 9.6 46 227-272 13-58 (101)
269 2dq0_A Seryl-tRNA synthetase; 33.3 1.3E+02 0.0045 30.5 8.5 61 239-299 31-94 (455)
270 1ses_A Seryl-tRNA synthetase; 32.8 3.8E+02 0.013 26.7 11.8 13 277-289 81-93 (421)
271 1lwu_C Fibrinogen gamma chain; 32.7 1.1E+02 0.0037 30.1 7.6 21 244-264 17-37 (323)
272 3thf_A Protein shroom; coiled- 32.6 1.4E+02 0.0049 27.5 7.9 42 234-286 14-55 (190)
273 1l8d_A DNA double-strand break 32.5 87 0.003 25.1 5.8 51 251-305 1-54 (112)
274 2ve7_A Kinetochore protein HEC 32.4 47 0.0016 32.1 4.9 49 239-290 185-233 (315)
275 3qne_A Seryl-tRNA synthetase, 31.7 1.6E+02 0.0055 30.4 9.0 61 239-299 33-96 (485)
276 3mtu_A Tropomyosin alpha-1 cha 31.7 1.1E+02 0.0037 23.9 6.0 34 240-273 17-50 (75)
277 2xzr_A Immunoglobulin-binding 31.4 2.4E+02 0.0081 23.8 12.2 68 221-288 34-104 (114)
278 3w03_C DNA repair protein XRCC 31.4 97 0.0033 28.3 6.5 32 238-269 144-175 (184)
279 3mov_A Lamin-B1; LMNB1, B-type 31.2 52 0.0018 26.9 4.2 49 239-287 37-85 (95)
280 4dyl_A Tyrosine-protein kinase 31.2 3.8E+02 0.013 26.2 11.6 62 229-290 320-389 (406)
281 2zqm_A Prefoldin beta subunit 31.0 1.3E+02 0.0045 23.9 6.7 33 258-290 75-107 (117)
282 3iox_A AGI/II, PA; alpha helix 30.9 1.8E+02 0.0062 30.4 9.2 54 241-294 36-93 (497)
283 2q6q_A Spindle POLE BODY compo 30.8 1.8E+02 0.0061 23.1 7.0 18 276-293 40-57 (74)
284 2b5u_A Colicin E3; high resolu 30.7 5.1E+02 0.017 27.4 12.7 17 241-257 316-332 (551)
285 1fxk_C Protein (prefoldin); ar 30.5 1.2E+02 0.0041 25.1 6.5 28 242-269 98-125 (133)
286 4ani_A Protein GRPE; chaperone 30.4 2.1E+02 0.0071 26.6 8.7 20 242-261 76-95 (213)
287 2q6q_A Spindle POLE BODY compo 30.4 2E+02 0.007 22.7 9.0 52 236-294 14-65 (74)
288 1m1j_C Fibrinogen gamma chain; 29.7 4.5E+02 0.015 26.5 12.7 19 278-296 116-134 (409)
289 4dzn_A Coiled-coil peptide CC- 29.6 1.1E+02 0.0037 20.6 4.7 11 277-287 19-29 (33)
290 2r2v_A GCN4 leucine zipper; co 29.0 87 0.003 21.6 4.3 26 263-288 4-29 (34)
291 1gk4_A Vimentin; intermediate 28.9 2.1E+02 0.0072 22.4 8.3 69 218-288 7-75 (84)
292 3trt_A Vimentin; cytoskeleton, 28.8 1.9E+02 0.0064 21.8 7.3 31 241-271 37-67 (77)
293 3v86_A De novo design helix; c 28.8 75 0.0026 20.6 3.7 9 246-254 7-15 (27)
294 2z5i_A TM, general control pro 28.5 1.7E+02 0.0059 21.3 6.6 35 228-262 8-42 (52)
295 3kqg_A Langerin, C-type lectin 28.2 50 0.0017 27.9 3.9 7 246-252 6-12 (182)
296 3fpp_A Macrolide-specific effl 28.1 3.5E+02 0.012 24.9 10.0 35 266-300 113-147 (341)
297 2w6a_A ARF GTPase-activating p 27.8 2.1E+02 0.0072 22.1 7.1 37 257-293 17-53 (63)
298 1vp7_A Exodeoxyribonuclease VI 27.6 1.2E+02 0.004 25.3 5.8 52 239-294 34-85 (100)
299 4dci_A Uncharacterized protein 27.3 3.2E+02 0.011 24.1 9.8 22 275-296 85-106 (150)
300 1fxk_A Prefoldin; archaeal pro 27.3 1.7E+02 0.0059 22.9 6.7 32 258-289 70-101 (107)
301 1fzc_C Fibrin; blood coagulati 27.3 31 0.0011 33.9 2.7 27 240-266 5-31 (319)
302 3plt_A Sphingolipid long chain 27.1 2.8E+02 0.0097 26.2 9.1 52 218-269 110-161 (234)
303 3s84_A Apolipoprotein A-IV; fo 26.9 2.5E+02 0.0087 26.5 8.9 60 228-290 165-225 (273)
304 3fx0_A NF-kappa-B essential mo 26.6 27 0.00093 29.1 1.8 38 235-272 34-74 (96)
305 1gk4_A Vimentin; intermediate 26.5 2.3E+02 0.0079 22.1 12.1 13 272-284 38-50 (84)
306 2akf_A Coronin-1A; coiled coil 26.2 1.2E+02 0.0042 20.4 4.6 21 277-297 9-29 (32)
307 3s4r_A Vimentin; alpha-helix, 26.0 2.6E+02 0.0088 22.5 10.1 20 247-266 24-43 (93)
308 2p22_A Suppressor protein STP2 26.0 2E+02 0.0069 26.0 7.6 66 231-296 26-92 (174)
309 2xnx_M M protein, M1-BC1; cell 25.9 3.5E+02 0.012 24.0 10.2 15 243-257 37-51 (146)
310 3cvf_A Homer-3, homer protein 25.4 2.6E+02 0.0089 22.3 10.1 45 240-284 28-72 (79)
311 1qvr_A CLPB protein; coiled co 25.3 4.4E+02 0.015 28.1 11.3 17 238-254 400-416 (854)
312 4b4t_J 26S protease regulatory 25.2 74 0.0025 32.1 5.0 21 238-258 24-44 (405)
313 3tnu_A Keratin, type I cytoske 25.1 3E+02 0.01 23.0 11.7 40 246-285 84-123 (131)
314 1uru_A Amphiphysin; endocytosi 25.0 2.7E+02 0.0091 24.5 8.2 64 222-288 126-198 (244)
315 2f23_A Anti-cleavage anti-GREA 24.8 1.9E+02 0.0063 25.0 6.9 23 269-291 48-70 (156)
316 3swk_A Vimentin; cytoskeleton, 24.8 2.6E+02 0.0089 22.1 8.5 11 279-289 68-78 (86)
317 3tq7_B Microtubule-associated 24.7 1.4E+02 0.0047 24.1 5.5 28 239-266 8-35 (82)
318 2lq4_p Lysophosphatidic acid r 24.3 23 0.00079 27.8 0.9 44 241-284 15-79 (80)
319 3lss_A Seryl-tRNA synthetase; 24.3 2.9E+02 0.0098 28.5 9.3 20 280-299 109-129 (484)
320 2k48_A Nucleoprotein; viral pr 23.8 3.3E+02 0.011 23.0 9.1 23 241-263 37-59 (107)
321 2gkw_A TNF receptor-associated 23.6 1.3E+02 0.0043 26.5 5.7 20 243-262 4-23 (192)
322 3mud_A DNA repair protein XRCC 23.5 2.7E+02 0.0092 25.3 7.9 33 230-262 133-165 (175)
323 2oa5_A Hypothetical protein BQ 23.5 42 0.0014 28.6 2.4 21 264-284 12-32 (110)
324 3gp4_A Transcriptional regulat 23.4 3.3E+02 0.011 22.9 9.2 65 218-282 63-131 (142)
325 1gmj_A ATPase inhibitor; coile 23.4 3E+02 0.01 22.3 9.5 11 224-234 22-32 (84)
326 3mtu_A Tropomyosin alpha-1 cha 23.4 1.9E+02 0.0066 22.4 6.1 27 273-299 15-48 (75)
327 1fio_A SSO1 protein; four heli 23.1 2.3E+02 0.0079 24.4 7.3 14 257-270 88-101 (196)
328 4b4t_M 26S protease regulatory 23.1 65 0.0022 32.6 4.1 56 242-299 16-71 (434)
329 1qsd_A Protein (beta-tubulin b 22.7 3E+02 0.01 22.8 7.5 49 242-290 28-80 (106)
330 3ljm_A Coil Ser L9C; de novo d 22.6 1.4E+02 0.0049 19.8 4.3 22 242-263 4-25 (31)
331 3uux_B Mitochondrial division 22.5 2.4E+02 0.0084 26.9 7.7 75 214-295 151-226 (242)
332 1m1j_C Fibrinogen gamma chain; 22.3 6.1E+02 0.021 25.5 13.2 40 258-297 89-128 (409)
333 3cve_A Homer protein homolog 1 22.2 2.9E+02 0.0099 21.7 10.7 27 241-267 23-49 (72)
334 1joc_A EEA1, early endosomal a 22.2 3.4E+02 0.012 22.6 8.5 38 244-281 9-46 (125)
335 1fxk_C Protein (prefoldin); ar 22.1 3.3E+02 0.011 22.3 8.0 21 243-263 106-126 (133)
336 4dk0_A Putative MACA; alpha-ha 21.9 4.5E+02 0.016 24.4 9.6 17 278-294 126-142 (369)
337 4h10_A ARYL hydrocarbon recept 21.9 1.9E+02 0.0065 22.4 5.8 36 216-251 3-38 (73)
338 2i1j_A Moesin; FERM, coiled-co 21.8 52 0.0018 34.3 3.3 12 215-226 310-321 (575)
339 4g63_A Cytosolic IMP-GMP speci 21.6 2.5E+02 0.0084 29.0 8.1 36 277-313 378-413 (470)
340 1x79_B RAB GTPase binding effe 21.5 3.7E+02 0.013 22.7 8.1 16 279-294 43-58 (112)
341 3tq2_A KE1; parallel three hel 21.2 2E+02 0.007 19.6 5.3 27 259-285 7-33 (36)
342 4ani_A Protein GRPE; chaperone 21.2 2.8E+02 0.0095 25.7 7.7 29 240-268 67-95 (213)
343 3ni0_A Bone marrow stromal ant 20.4 3.1E+02 0.01 22.9 6.9 40 231-270 52-91 (99)
344 4fla_A Regulation of nuclear P 20.2 4.4E+02 0.015 23.0 10.5 13 238-250 85-97 (152)
345 3pjs_K KCSA, voltage-gated pot 20.1 2E+02 0.0067 24.7 6.1 27 236-262 135-161 (166)
346 2akf_A Coronin-1A; coiled coil 20.0 1.3E+02 0.0046 20.2 3.8 21 244-264 4-24 (32)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.50 E-value=2.5e-14 Score=108.23 Aligned_cols=52 Identities=37% Similarity=0.548 Sum_probs=48.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
||++|+++||+||++||.||++|+++||.+|..|+.||..|..++..|++.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999998876554
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.29 E-value=1e-11 Score=95.82 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+||.+|+++||++|+|||+||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998886544433
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.22 E-value=4.4e-11 Score=91.43 Aligned_cols=50 Identities=32% Similarity=0.397 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
||.+|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999988865443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.16 E-value=4.5e-11 Score=92.65 Aligned_cols=48 Identities=35% Similarity=0.421 Sum_probs=41.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
++.+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|.+++
T Consensus 13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334599999999999999999999999999999988888887666544
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.13 E-value=1.1e-10 Score=89.58 Aligned_cols=50 Identities=34% Similarity=0.404 Sum_probs=45.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
|+.||+.+||++|++||+||++++.+||.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988865443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.90 E-value=4e-09 Score=83.57 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=47.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 220 IRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 220 ~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
.||+..||.|+|..|.||++||.+||.+|..|+.++..|. .||..|+.++..|+.++.
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~--------------~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTT--------------LENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999998887654 556666666666666553
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.86 E-value=4.8e-09 Score=81.07 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
|+.+++.+||.+|+|+|.||++++.+|+.+++.|+.+|..|..++..|+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999998886544
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.45 E-value=9.8e-07 Score=72.54 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
.+++...|+.+|.++|+|||.++++...+++.+|..|+.||..|..++..
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667888999999999999999999999999999999998888854
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.45 E-value=1e-06 Score=71.12 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.+++-..|+.+|.++|+|||.++++...+++.+|..|+.||..|..++..|.
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678899999999999999999999999999999988888776443
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.39 E-value=1.3e-08 Score=86.68 Aligned_cols=64 Identities=34% Similarity=0.441 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
..+.|.+||.++||.+|++||.||.+++.+||.++..|..+.+.|. .||..|+.++..|+.+++
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~--------------~En~~l~~E~~~lk~k~e 96 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA--------------SENASMKLELDALRSKYE 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT--------------STTSHHHHTTTSSSSCC-
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999988877766655554 345555555555554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.17 E-value=1e-05 Score=66.95 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
....|..||.++||.+|+-||.||.....+||.++..|..+...|..++..
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999998887777777655543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0019 Score=46.71 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv 283 (401)
|+|+.+||.+++.|+..|.+|..++. .|..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence 68999999999999999988887776 4567888887644
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.30 E-value=0.0018 Score=53.71 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELEL 246 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~ 246 (401)
....|..||+.+||.+|++||+||.+.+++|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999999888764
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.56 E-value=0.083 Score=46.28 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
+.+...+.|+.+++.+..|...|+.++..++.++..+..++..|+.++..|+.++.-+|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888888888888888999999888888888888888888888888888877763
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.25 E-value=0.059 Score=40.51 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
-+.|-.||+.|+.||..|+++|.+-..++..|+.|-.-+|+-+..|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 36788999999999999999999999999999998888887666554
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.95 E-value=0.17 Score=41.10 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+.-|..+|+.|+.+|..|..+...++.....+..||..|+.+....+.++.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666677788888887777766654
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.98 E-value=0.44 Score=38.75 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
.-++.||.+|+++-....-|..++..|+++...+..+|..++...+.|+++..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~ 58 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENN 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45788999999999988888888888888888888888886665555554443
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.61 E-value=0.26 Score=38.12 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
|..-|.+|++|..-|..|..++..++.+++.+..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 55678899999999999999999999999999999999874
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.33 E-value=2 Score=35.47 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.+.++-..+..|..++..|+.+-..+..+|....+++......-...-.++..|.++++++|+
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444445555555555555555555555544444444333333334477777777777763
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.02 E-value=0.62 Score=47.12 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAKVRL 292 (401)
Q Consensus 277 r~LKaqve~Lrakvk~ 292 (401)
.+|+++++.++++++.
T Consensus 561 ~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 561 AELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 21
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.81 E-value=0.39 Score=40.48 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYK-------QFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~-------qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
-+||.+++.|+.||..|+. ++..|..++..|..||..|+.+-+-.++
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688999999888888877 5556666666666666666665555443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.44 E-value=1.1 Score=39.16 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+.+++++.++..|+.+...+..++..+.+++..+..++..|..++..|++++
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555444
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.81 E-value=3.7 Score=33.61 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 015739 281 SDVEALRAKVRLAE 294 (401)
Q Consensus 281 aqve~Lrakvk~aE 294 (401)
.++..|.++++++|
T Consensus 86 ~evasLnRriqllE 99 (101)
T 3u59_A 86 AEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 35666666666654
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.77 E-value=1.6 Score=49.12 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFT----DAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~----~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.+++|+.+++.+..|...|..++. +|+++...|..||..|++++..|...+...+
T Consensus 992 e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433332 2345556677788888888888875554443
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.35 E-value=3.9 Score=36.69 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=50.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++.+-+..-++.-...+..+.+-..-++.|+.|...|..++..+.++...+..||..|-.+. +.++-+.|+.|
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~M 144 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33333333333333344445566677888999999999999999999999999998887764 33455566655
No 26
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.34 E-value=0.58 Score=39.35 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 015739 272 ANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 272 l~~ENr~LKaqve~Lrakvk~aE 294 (401)
...+=..|+++++.|+.+|+..|
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666666666665444
No 27
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=90.79 E-value=2.4 Score=32.47 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
|...+.+||.++..++.--..+..++..+.-.+..+..++..=+..++.|.+||...+.++
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l 64 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 3456777888888877766666666666666665555555555777899999998888765
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.48 E-value=2.5 Score=34.55 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+.++...|..||..|+.+|+.|+.++..+..++..
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777766666544
No 29
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.40 E-value=1.1 Score=36.37 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.||..|+.++..+...+..+..||+.|+.=+...+.-+.+.++|
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998887777766555554
No 30
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.33 E-value=1.4 Score=33.69 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATL 258 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L 258 (401)
++-+||.++|++|.|=+..|+-...-...-..||..|
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 3456999999999998876655544333333444333
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.82 E-value=0.87 Score=34.73 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
.+...+.++...|..+|..|+.++..|+..+..+..++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777888888888888888888888776653
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.53 E-value=2.7 Score=33.63 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+.++...|..||..|+.+|+.|+..+..+..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555544
No 33
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=89.43 E-value=0.42 Score=31.87 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=18.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 015739 269 YKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 269 ~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..+++||++||+++++|-+||
T Consensus 8 lasleaenkqlkakveellakv 29 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998876
No 34
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.03 E-value=1.5 Score=31.88 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.+..||.+|..|+.||+.|+++.-.-..-+ .-|..++..||.|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdli-------aylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLI-------AYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHH-------HHHHHHHHHHHHHh
Confidence 467899999999999999988753322222 34556666666554
No 35
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.92 E-value=0.44 Score=32.84 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
|..||.+|+.|..+|..|..++..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56788888888877777776665443
No 36
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=88.90 E-value=0.033 Score=46.19 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQA 239 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~ 239 (401)
....|..||+.+||++|++||+||..
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999864
No 37
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=88.75 E-value=1.6 Score=31.94 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+||.+|+.|+.--..|.-++..|--+|... ...||+++..|+.+|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 566677766666666666665554444333 467888888887653
No 38
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=88.70 E-value=1.3 Score=37.38 Aligned_cols=82 Identities=15% Similarity=0.290 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRK--QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RK--k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.++|=.|-|++| |+-=-.|- .=+++-|..+++.++.....|.+++.+..+.+..+.-....|+.++..|+.+++.
T Consensus 7 vEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 7 VEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp -CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667776 22211111 1135566667777777777777777777777777777788888888888888887
Q ss_pred HHhHhhh
Q 015739 293 AEDVVSV 299 (401)
Q Consensus 293 aE~lv~~ 299 (401)
++++|.-
T Consensus 84 RD~LI~E 90 (103)
T 4h22_A 84 REEMLEP 90 (103)
T ss_dssp TTSCC--
T ss_pred HHHHHHH
Confidence 7766543
No 39
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.65 E-value=2.2 Score=33.89 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.++..+++.++.+|..|..++..+++++..-..+-..++.++..+-..+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888999999999999988888888777777777766665443
No 40
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.42 E-value=0.58 Score=32.40 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46778888887777777766666544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.37 E-value=4.5 Score=40.83 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
++.++..+.+++...++++..++.|...|+.+++..+++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 333333333333333444444444444444444433333
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.24 E-value=2.9 Score=34.96 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
+..|+.++...+.+...|..++..-..+...+..+...+..+++.|.+.
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555544
No 43
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.98 E-value=0.87 Score=31.90 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..||.+|+.|..++..|..++..|+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 477888888888888877777666554
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.97 E-value=4.9 Score=45.18 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEAN----TNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~----~ENr~LKaqve~Lrakvk~aE~l 296 (401)
++.+..|+.+++.|+.+..++.++...+++++..+. ..-..|+.+...|++++..++..
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554333 22223555555566555555533
No 45
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=87.67 E-value=2.3 Score=34.04 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
++||.+|.+|+.--..|.-++..|--+|... ...||+++..|..+|+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 4567777777776666666666655555443 577999999999988753
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.57 E-value=1.6 Score=32.77 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.+..|+.+...+..+|..|+.++..|+..+..+..++
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777888888888888888888887766554
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.53 E-value=1.6 Score=33.17 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
..+..|+.+...|..+|..|+.++..|+..+..+..++.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888899999999999999999888877654
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.51 E-value=1.1 Score=35.26 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.+.+|+.....|..||..|+.++..|.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999999988776544
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.25 E-value=1.4 Score=35.55 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+++..+++.++.+|..|..++..+++++..-..+-..++.++..+-..+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888777776667777666654433
No 50
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.62 E-value=14 Score=31.43 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
.+..|+.++..|+..+..|...+..|.+....+....|..-.-++.+..|+..+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677888888888888888888888887777777777777777777666543
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.33 E-value=3.3 Score=35.81 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
.|+.+..+-+....+|..++..|.+++..+..|=..||.+.+.|
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 34433333333344444444444444444444444444444444
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.09 E-value=10 Score=34.49 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
..+..-=+.=||.|.+..+.+.+|+.+|..|+.|...++..+ ..+..+|+.|...+..|+..
T Consensus 72 ~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 72 YQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344444555677777778888888888877777766665544 35566666666666666543
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.91 E-value=3 Score=31.06 Aligned_cols=41 Identities=27% Similarity=0.507 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
..+.+|..++..|...|..|..-|....+++ ..|+++|+.|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el-------~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQL-------LALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 3455778888888888888877776655555 3455555554
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.77 E-value=14 Score=33.97 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+..|+.++..|+..+..|..++..|.+....+....|.+..-++.+..|+..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777666666665433
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.12 E-value=1.1 Score=30.94 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46778888888777777776666544
No 56
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=84.97 E-value=2.7 Score=31.18 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 245 ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 245 E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
|.++..|+.-|..|..+++.|+..+..++.|+..|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 6788899999999999999888888777766665554
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.83 E-value=6.3 Score=35.36 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 015739 244 LELQVERLK 252 (401)
Q Consensus 244 LE~qV~~Le 252 (401)
|+.++..|+
T Consensus 73 L~~El~~l~ 81 (152)
T 3a7p_A 73 LQKELKSKE 81 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.02 E-value=2.7 Score=33.46 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
++|.+||.++..++.-...|...+...++++. .|+.++..|..|++.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id-------~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGA-------RNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 46788888888888777777777765555543 4445555555554433
No 59
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.82 E-value=1.5 Score=30.65 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..||.+|+.|..++..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788888888888887777766554
No 60
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.77 E-value=1.4 Score=30.30 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
|..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56788888877777777766665443
No 61
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=83.34 E-value=2.9 Score=31.91 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
-|.++..|+..|.+|..++..|+.++...+.|+..|.+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888999998888888887777766666554
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.02 E-value=1.4 Score=30.46 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 467788888888888777777665543
No 63
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.79 E-value=5.3 Score=31.45 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
..++.++.++...+.....+..++..|+.++..+..+=..+..++.....+|..++
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444455555555555554443
No 64
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=82.77 E-value=1.5 Score=30.38 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788888888888888777776543
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.50 E-value=8 Score=31.18 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
+.+|-.+++.|+.|...|+-+++.+..++..+....+.+..++..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888887777777777777766666543
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.49 E-value=17 Score=29.10 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.....+|+.+...|..+...|..++.++...+..|......|-.++..|..+|
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457788888889988888888888888888888888888888888877665
No 67
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.39 E-value=1.7 Score=32.75 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
..+..|..+...+..+|..|+.++..|+..+..+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888899999888888877655433
No 68
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.15 E-value=8.8 Score=43.14 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 268 QYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 268 q~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
++..+..+...|+.+++.|+.++..
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.15 E-value=23 Score=30.23 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKG---ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~---EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|-.+|-..=..|+..+++|+.++.+++. ...-|+.|+......|..-...=..|-.+.+.|..+|..+.
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 4556667777788889999988888887 66678888888888886665555556666666665554443
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.05 E-value=4.4 Score=40.65 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
++.+..|+.++..|+.+.+.|..++..+.+++...+..-+.|--++++|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555544444444444444
No 71
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.01 E-value=6.1 Score=33.35 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
-..+.+|+.+|+.|+.||..|+.+...-.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999887765443
No 72
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.00 E-value=1.7 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788888888887777776665443
No 73
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.83 E-value=17 Score=30.30 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 224 VSNRESARRSRKRKQAHMQELELQVERLK---GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 224 lsNRESARRSR~RKk~~L~eLE~qV~~Le---~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
..+-.+|-..=..|+..+++|...+.+++ ..+.-|..|+......|..-...=..|..+.+.|..++..+.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566777777889999999999998888 666779999999999988777777777777777776665444
No 74
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.78 E-value=2.1 Score=30.02 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 252 KGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 252 e~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
-.||.+|.+.++.-..++..|..||..|+.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368999999999999999999999988863
No 75
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=81.52 E-value=9.7 Score=35.68 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.||..|+.++..+..++..+..||..||.=++.++.-+.+.++|.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999987777766555555543
No 76
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.12 E-value=1.9 Score=33.94 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHH
Q 015739 240 HMQELE 245 (401)
Q Consensus 240 ~L~eLE 245 (401)
.+.+|.
T Consensus 20 ~f~~Lr 25 (83)
T 1nkp_B 20 SFHSLR 25 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 77
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.03 E-value=2 Score=41.22 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
...+.+|+.++..|...|..|...+..++++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777666544433
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.80 E-value=17 Score=35.99 Aligned_cols=29 Identities=10% Similarity=-0.075 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
..+++...+..||..|+..++.+..++..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 33344444444444444444444444433
No 79
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.75 E-value=2.2 Score=29.41 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
|..||.+|+.|-.++..|..++..+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6678888888888877777666544
No 80
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=80.69 E-value=16 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+..|+.++..++.--..+..++..+.-+...+..++...+..++.|.+|+.-.+.++.
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l~ 64 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIG 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHc
Confidence 3344555555555444555555555555555666667778888889988887877754
No 81
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=80.65 E-value=1.4 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 015739 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQ 247 (401)
Q Consensus 215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~q 247 (401)
.+.||.||.|+-=.==.|-|+-|..-.+++-.+
T Consensus 117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~ 149 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFIHFREACRETYMEFLWQ 149 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999876555555555555444443333
No 82
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=80.37 E-value=5.9 Score=33.84 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
.-+++|..++.+|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999997
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.15 E-value=17 Score=29.21 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
|+|=++.+..-..+++.|+.-..+|..=-..|..-+..+..|-..|...++.|+.|.+-++..+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666777777777777777777777777777888888889999999988887766543
No 84
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.01 E-value=2.2 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..+..|..+...|..+|..|+.++..|+..|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777888889999888888765
No 85
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.01 E-value=3.9 Score=37.88 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFT 263 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~ 263 (401)
.-|..|..||..|..++.
T Consensus 20 ~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLD 37 (190)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 86
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=79.92 E-value=14 Score=29.69 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFT-------DAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~-------~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..+-.+|+.|..||.+|...-. +|..+...|..|+..|+.++..+++-.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556677888888887765433 466677788888888888887776543
No 87
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.73 E-value=8.2 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+++.++.+..+|..++..|+.+|..+..|-..|+.+++..+.|+..|+.+
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777888888888888899999999999998888877
No 88
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.43 E-value=5 Score=31.91 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+||.++..|+...+-+..-+..|++.. .....++..|+++++++.+-++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v-------~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEAL-------ADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766665555555443322 33455788888888877655443
No 89
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.34 E-value=23 Score=32.14 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
|+=.--|.||+. .||...+..++..+.+|..++..|......|..+...|.++++.=|
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455554 5555566666666666555555555555555555555555444433
No 90
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.33 E-value=15 Score=30.04 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 252 KGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 252 e~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
-.||..|.+++..+..++..+..+|..|+.=.+.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888999888874443
No 91
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=79.28 E-value=15 Score=29.57 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
++.|..+|..|+..++.+..++..+
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.93 E-value=11 Score=32.38 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..-+.++..|+.+|..|+.|... -+.....+..||..|+.+++.|+...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e-------~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE-------QQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666666655444 44445677889999999998885543
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.88 E-value=3.2 Score=30.90 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFT 263 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~ 263 (401)
..|+.|+.||..|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456666666666655554
No 94
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.44 E-value=16 Score=29.80 Aligned_cols=31 Identities=6% Similarity=0.247 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..+..|+.++..+..+|..|..++..|+..+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666655555554433
No 95
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=77.95 E-value=8.3 Score=30.77 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+|.+-|.++..|+....--.+-...|.-.+-.+..||..|..++..|++
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3444445555555554444445556677778889999999998888764
No 96
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.91 E-value=20 Score=28.14 Aligned_cols=46 Identities=2% Similarity=0.089 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
++..++.+......+...+.+.+..|...++.|..+++.+..++..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.73 E-value=7.4 Score=41.05 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+|++++..|++++......=++|+..|+.++.+++.+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766655666788888888888888777
No 98
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.56 E-value=5.9 Score=39.95 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
+.+|+++++.|+.++..+..++..+.+++...+.+-+.|--++..|
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555544444444444444444
No 99
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.17 E-value=4.4 Score=32.17 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL 262 (401)
.||..|+.+...|..|...|..+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444333
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.16 E-value=4.2 Score=30.24 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 255 NATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 255 N~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
...|+.++..|++++..|..++..|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333
No 101
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.00 E-value=13 Score=41.82 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015739 276 NRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 276 Nr~LKaqve~Lrakvk~a 293 (401)
-..|..++..|+.+++.+
T Consensus 915 l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 915 RVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 102
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.81 E-value=17 Score=30.95 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 229 SARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
.-|..+..=+.|+-+||+.-+.|+........-|.++..+|..+...|..|..++..
T Consensus 46 ~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 46 QTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666778888888888888888888888889999999998899888887763
No 103
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.22 E-value=15 Score=29.19 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDA------AQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L------~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
|..++.|+.++..|+.+...|..++.+- ..++..+..+=..|..+++.+-.+=..++.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999998752 2345555556666666666666555444443
No 104
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=76.09 E-value=4.5 Score=27.27 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+..||++|.+.+.||-+|..++..|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34556666665555555555554443
No 105
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.60 E-value=13 Score=39.22 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.+|.++||.++..|+.+...-..+|..|+ .-=+.|+.+|.+|+--+...-+.|+-
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQ-------snLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ-------KNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444555555555554444334444444 44455666666776666666666655
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.42 E-value=17 Score=30.79 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
+..-..|.+|+.|+.+..+|+.++.........+..+|..|+.+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34455666788888888888888877666666666666666543
No 107
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=75.24 E-value=4.4 Score=28.06 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..|..+...|..+|..|..+++.|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777788889999999999987643
No 108
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.03 E-value=29 Score=29.97 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
.|+.|+..|..+|.++..+...+..+|..|..
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 33333333333333333333333333333333
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.59 E-value=23 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.|.+++++....++++|+.|++.|++.+..+.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 33444444444455555555555544444333
No 110
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.12 E-value=2.9 Score=40.15 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 245 ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 245 E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
|.++..|+.++..|..++..|...+..+..|...||.+++.|
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666666555555544444444444444444
No 111
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.06 E-value=12 Score=31.61 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
+|+.|+..-..+...+..+++++.....+-..||-....|..++..+.+.+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555554433
No 112
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.02 E-value=4.5 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 259 YKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 259 ~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
+++....++.+..+..+|..|..++..|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3444444455555555566666665544
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.49 E-value=3.5 Score=30.66 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..+..|..+...|..||..|+.++..|++.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777788899999999999887643
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.23 E-value=28 Score=36.05 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 271 EANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 271 ~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.+..+=+.|+.++..|.++++.+++-+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666655555554443
No 115
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.68 E-value=72 Score=31.27 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~ 299 (401)
++|..++.+|.++++.++..|++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 116
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.45 E-value=40 Score=27.48 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
...|..|+.+...|..+-..+.++.+.+..+...+..+-..|..++..-..++
T Consensus 38 ~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 38 AENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555455555555555555555555555555554444433
No 117
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.97 E-value=6.1 Score=31.23 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERL---KGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~L---e~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.|+...-.+-|+.|.+=...+.+|..-|-.. .....-|...+ +-+..|..++..|+.+.+.|+.+++.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai----~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAI----DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666676766677788887766532 11122233332 22334455555566666666555543
No 118
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.27 E-value=3.3 Score=43.37 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
...+|+.++.+++.|.......|...++....|..+-++...+.+.|.++...++.+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999998888888888888888888888888888888877777766554
No 119
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=70.04 E-value=4.6 Score=27.81 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
..|..+...|..+|..|..+|..|+.-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888999999999998753
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.00 E-value=35 Score=35.31 Aligned_cols=61 Identities=8% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANT-----------NNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~-----------ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+.+|..+...++.+-..|+.+...+.+++..+.. +-..|++++..|..+++.++..+..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666655432 2247899999999999988876555
No 121
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.83 E-value=6.2 Score=27.34 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..||.+|+.|-.++..|..++..|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467788888888877777776665543
No 122
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=69.64 E-value=3.7 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 015739 267 QQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 267 qq~~~l~~ENr~LKaqve~Lra 288 (401)
+.+..+..||..|+.++..|++
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555444
No 123
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.40 E-value=36 Score=28.55 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTD-------AAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~-------L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
..+|.+|..+|..+..+|..|..++.. ++.+|..-...-..+..++..|+..|..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
No 124
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=68.34 E-value=52 Score=27.79 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 242 QELELQVERLKGENATLYKQF-------TDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL-------~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+|+.+...|..+-..|..+| .+....+..+......|-.++..|..++...++.
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444 3455555666666666777777777766665554
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.22 E-value=13 Score=36.61 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 015739 278 VLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 278 ~LKaqve~Lrakvk~aE~lv 297 (401)
.++.+|..|.++|..++..|
T Consensus 37 ~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 37 VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444433
No 126
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.98 E-value=47 Score=26.93 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 226 NRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 226 NRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
|-+||-.+--|-|+-+ ..++...+..|..+.++|. .....|+.|..+++.|+.++..
T Consensus 14 eLQSALeaEIqAKQ~i---~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSL---SREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555544432 3344556666666666665 4455667777777777666544
No 127
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=67.89 E-value=37 Score=31.45 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHhH
Q 015739 223 MVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNR---VLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr---~LKaqve~Lrakvk~aE~l 296 (401)
+..-....+..-.+.+..+.+++.++..++.+...+..++...+.+...+. .|+ .|..+++.+..+...+|+-
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555556666666666666666666666666655554322 222 3334555555555555443
No 128
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.75 E-value=14 Score=29.65 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHH
Q 015739 270 KEANTNNRVLKSDVEAL 286 (401)
Q Consensus 270 ~~l~~ENr~LKaqve~L 286 (401)
..+..+|..|+.+++.|
T Consensus 69 ~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 69 DLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445566666666555
No 129
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.66 E-value=82 Score=32.54 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 015739 277 RVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv 297 (401)
+.|+..++.|+.|++.++..+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.63 E-value=18 Score=33.52 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.|..+++....|++.|+.++..++++.
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444444444444444333
No 131
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=67.62 E-value=25 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
--.||..|+.++..|+.|+..|..++.
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888877777665
No 132
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.60 E-value=23 Score=25.81 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+.++.+++.++..++.+-..+..++..+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 133
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.66 E-value=5.8 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
..|+.++.+|..+...|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566667778888775
No 134
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.48 E-value=15 Score=37.05 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 249 ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
..|+.|..+|++++..+.++...+..++..|++++.....+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr 48 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERK 48 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555556666666666544443333
No 135
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.47 E-value=17 Score=28.31 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKG 253 (401)
Q Consensus 240 ~L~eLE~qV~~Le~ 253 (401)
||..|+.++..|+.
T Consensus 48 YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 136
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.34 E-value=5.7 Score=29.63 Aligned_cols=30 Identities=7% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
++|+++...++.|..||..|+.++..++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888889999999999999888776554
No 137
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=65.99 E-value=23 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
--+|+..|..++..++.+...+ ..++..|+.|...+++|+-+.
T Consensus 37 svdYI~~Lq~e~~r~~e~e~r~-----------k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLENRQ-----------KKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHH
Confidence 3567777766666555444333 345667788877777776544
No 138
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.68 E-value=15 Score=36.77 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
.+..|+.++..|+.+..+|..++..++.++..+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777776666665555444
No 139
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.65 E-value=36 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
.||..|..++..+......+..+|..||.=++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888877666665555555555555433
No 140
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.65 E-value=33 Score=24.88 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 015739 248 VERLKGENATL 258 (401)
Q Consensus 248 V~~Le~EN~~L 258 (401)
|.+|+.|...|
T Consensus 5 vaqlenevasl 15 (49)
T 3he5_A 5 VAQLENEVASL 15 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 141
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=65.64 E-value=10 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
.+|..+...|..+|..|..+++.|+..+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34455556666777888888888876553
No 142
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.64 E-value=19 Score=25.94 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYK 260 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~ 260 (401)
...+||.+|..|+.||.-|++
T Consensus 18 ~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 345556666666666555544
No 143
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=65.37 E-value=35 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
|...|..|..|+.+|..++..+++++..+..+-.........|+.++
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888887777777666544443323333444444
No 144
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.35 E-value=2.8 Score=31.18 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
..||.-|..|+..|..|.+.+..|.
T Consensus 20 aklenivarlendnanlekdianle 44 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHH
Confidence 4456666666666666665554433
No 145
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.27 E-value=25 Score=28.20 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 015739 271 EANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 271 ~l~~ENr~LKaqve~Lrakvk 291 (401)
.+..+...|+.+.+.|+++++
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555443
No 146
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.10 E-value=57 Score=26.78 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 231 RRSRKRKQAHMQELE----LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 231 RRSR~RKk~~L~eLE----~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+|-|.+-.-|...=. .++..|+.++..|.. +...|..||..++.++..+.+++.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~-------e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ-------QVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322 233445555555544 445556667777777777766654
No 147
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=65.07 E-value=3 Score=39.32 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
|+.||++|++++..|+++.. +...|++|.++|++.+.+
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 44555555555554443332 234555555555554443
No 148
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.04 E-value=50 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
..|+.+++.|+..+..|...+.++.+++
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444443
No 149
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=64.43 E-value=3.9 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 261 QFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 261 qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
++..|+.++..|...|.+|..+-.-|+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444443
No 150
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.82 E-value=53 Score=27.72 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQF 262 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL 262 (401)
+++.|+..+..|...+
T Consensus 53 el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 53 ELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 3333333333333333
No 151
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=63.33 E-value=14 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.|..++..|.-+...+..|...+++-...|+.+++..|
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555555554444
No 152
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.22 E-value=70 Score=28.54 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
+.+.+.+...|..|+.++..-+..+...+..+
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554443
No 153
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.90 E-value=25 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
.|...+.+||.++...+.+...|+.++.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665554
No 154
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=62.86 E-value=12 Score=25.96 Aligned_cols=29 Identities=0% Similarity=-0.024 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..|..+...+..+|..|..++..|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44566677778888999999999887643
No 155
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.76 E-value=88 Score=31.76 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 246 LQVERLKGENATLYKQFTDAAQ---QYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~q---q~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.+++.|+.+...+.+++..+.. ....+..+=+.|+.++..|.++++.+++-+
T Consensus 45 ~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 45 KEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443221 123445555666666666666666665444
No 156
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.95 E-value=13 Score=31.12 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhccccccccccc
Q 015739 261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLL 310 (401)
Q Consensus 261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t~~~n~l~ 310 (401)
++..+++++..|..||..|+.+++.|..++.. ..-+|.|.|....++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~---~~l~Gd~~~~~TKVl 59 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER---RALQGDYDQSRTKVL 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCCSCCCTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccccCCccCeee
Confidence 55556666667777777788888888776532 234566665443443
No 157
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.61 E-value=13 Score=25.62 Aligned_cols=28 Identities=4% Similarity=0.113 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.+|..+...+..+|..|..++..|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556677778888999999999887643
No 158
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.29 E-value=56 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
|.+++..-+.++.+++.|=..|..+++.++++|+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445556666666667777777777776543
No 159
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=61.20 E-value=39 Score=24.72 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015739 245 ELQVERLKGENATLY 259 (401)
Q Consensus 245 E~qV~~Le~EN~~L~ 259 (401)
..++..|+..|-+|.
T Consensus 9 rkkiarlkkdnlqle 23 (52)
T 3he5_B 9 RKKIARLKKDNLQLE 23 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh
Confidence 344445555544443
No 160
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.17 E-value=1e+02 Score=30.90 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQ--------YKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq--------~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
..+.+|..+...++.+-..|+.+-..++++ ...+..+=+.|+.++..|.++++.+++-+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444444444444444433 33455555666666666666666555443
No 161
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.12 E-value=60 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
..+|+.++..|+.+|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888777777554
No 162
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.93 E-value=65 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE 271 (401)
Q Consensus 224 lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~ 271 (401)
|+.+++-++-=.+-+.-...++.++...+..|..|..++..++.++..
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333444455667778888888888887777655444433
No 163
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.74 E-value=3 Score=39.32 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
+..|.++.+.|+.||..|+.++. ++..+..||+.||+-+.
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLD 60 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 44556666777777777766554 44566777888777554
No 164
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=60.19 E-value=48 Score=24.68 Aligned_cols=27 Identities=4% Similarity=0.014 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.+++|..+|.+|..+...|..++..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566555555555555444433
No 165
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=59.68 E-value=36 Score=32.15 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~E 275 (401)
.+..+|+-+..|-.+-+ +.+..|+.++++.+.|+..+.+++...+++..++...
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655433 2467888999999999999988888777666544433
No 166
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.61 E-value=40 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
|..++..|..+...|...-+..+.++..|+.+|.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444556666666666554
No 167
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.64 E-value=68 Score=25.58 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
+...+.....|+..+..|..+..+|..++..+......|.++-..|..+++..++
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666666666666665544
No 168
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=58.22 E-value=9.1 Score=30.39 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+|..++..+......|..=|.........|..+|+.||.+|..|.+
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444455566777777777777654
No 169
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=58.10 E-value=13 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
.|-.++.....+...|+.+|+.|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666677777766654
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.10 E-value=36 Score=42.87 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQ--------------YKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq--------------~~~l~~ENr~LKaqve~Lr 287 (401)
...++-+.|+..-..+++.|.+|+.+++.|+.+-+.+..+...++.+ +..|..|+.+=.++++.|.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 44444555555556677777778777777776655544433333322 2345556666666677776
Q ss_pred HHHHHH
Q 015739 288 AKVRLA 293 (401)
Q Consensus 288 akvk~a 293 (401)
.+...+
T Consensus 2098 ~~~~~L 2103 (3245)
T 3vkg_A 2098 TQMSTV 2103 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655443
No 171
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.86 E-value=78 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
..++.++..+..+=..+|.+++..
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444445555554443
No 172
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=57.39 E-value=43 Score=24.97 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.++..++..|+.+...++.++....+.|..|..=--.|-.++.+.|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45556666666666666666666666777776666667777777754
No 173
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.15 E-value=42 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+..|...+.....+...|..++..-..+...+..+...+..+++.|.+.|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666666666666667777777777777776654
No 174
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=56.96 E-value=47 Score=26.28 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQYKEAN 273 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~ 273 (401)
+|...|..|..|+..|..++..+++.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888887777655
No 175
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.94 E-value=35 Score=34.61 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
..|++++..|+++...-...=++|+..|+.++.+++.+|-
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655555557777777777777777763
No 176
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=56.83 E-value=21 Score=33.46 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+.=.|.|++.|+.+|..|..+++.|. ....+|..+-.++..|..++-.++
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566778888888888888887654 455678888888888876665433
No 177
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=56.51 E-value=16 Score=33.57 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.+.+|..++.+|+.+|..|+.+.+...+++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777766665554443
No 178
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=56.40 E-value=9.7 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL 262 (401)
..|++.|+.+|..|+.+...|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999888877776654
No 179
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.38 E-value=9.8 Score=24.85 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 015739 273 NTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 273 ~~ENr~LKaqve~Lrakvk 291 (401)
...|..||+++..|+-.+.
T Consensus 6 kqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHH
Confidence 3445566666666655443
No 180
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.92 E-value=40 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 015739 270 KEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 270 ~~l~~ENr~LKaqve~Lrakv 290 (401)
..+..|...|+.+.+.|++++
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555554444
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.75 E-value=15 Score=37.00 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAKVR 291 (401)
Q Consensus 277 r~LKaqve~Lrakvk 291 (401)
+.|+.++..++.+++
T Consensus 73 ~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 73 RHLKRELKRAQEEVK 87 (428)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444544443
No 182
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=55.66 E-value=51 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
....++...++.|..+ |..|+.++..|.+
T Consensus 183 kae~el~~ak~~ye~l---n~~L~~eLp~l~~ 211 (251)
T 2fic_A 183 KAEEELIKAQKVFEEM---NVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3555666666677655 8889998888844
No 183
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=55.52 E-value=82 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+.|.+|.-+|..|+.|-.+..++|...+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3456666666666666655555554443
No 184
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=55.44 E-value=9.1 Score=32.34 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 015739 269 YKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 269 ~~~l~~ENr~LKaqve~Lrakv 290 (401)
...+..+|..|+.++++|+.++
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a 114 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQA 114 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777776544
No 185
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.12 E-value=88 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|+.++..|..++..-.......+.+.+.|+..+..++
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333444445666666555443
No 186
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.74 E-value=1e+02 Score=31.90 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 271 EANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 271 ~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
.+..+=+.|+.++..|..++..+++-+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667767666666555443
No 187
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.69 E-value=19 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
.|..+..+.++||-.|.+++..|...
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34445556788999999998888653
No 188
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.56 E-value=0.22 Score=41.26 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKRKQA 239 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~RKk~ 239 (401)
..-.+..||+-+||.+|+++|+||..
T Consensus 62 l~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 62 LALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 34567889999999999999999853
No 189
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=54.14 E-value=53 Score=31.18 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=41.4
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESA-RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 218 KR~RR~lsNRESA-RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|-.=+-|+|||.. +.+|.||+.-.+++ ..|+... --..++..|++++..++.+|-+..+++..+.+
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l~~~I----~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKITDEI----AHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 3344677888876 55566665544444 3344321 12356778888888888888888888776543
No 190
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=53.74 E-value=17 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+|..+...+..+|..|..++.+|+.-+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444555566677777777777766544
No 191
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=53.63 E-value=25 Score=34.09 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 245 ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 245 E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
+.+++.|+.+++.|..++..|++....+... .+++++.|+..+.+-++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~---n~~rl~~Lqk~~~~~~~~ 232 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA---NAERLKRLQKSADLYKDR 232 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665555444433 344455666666555543
No 192
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.35 E-value=8.9 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~qq 268 (401)
.|+-||..|.+++..|+|+
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 3444444444444433333
No 193
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=53.07 E-value=11 Score=32.29 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
+..+...+..|++.|+.+++.|+.++.
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555443
No 194
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.54 E-value=13 Score=28.91 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKG----ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~----EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..-|+.|.+=...+.+|..-|-.+.. ...-|... ..-+..|..++..|+.+++.|++
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~A----i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKA----TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445667777777665431 12222222 23345566677777777777765
No 195
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.28 E-value=1.1e+02 Score=26.06 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
|..|+.+..-.+..+..=...-..+..|...|..+++.|++++
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444444444444433444455566667777777776654
No 196
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=51.96 E-value=63 Score=33.66 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
...+.+..+.++ ...|++++..|+++...-...=++||..|+.++-+++.+|--|..
T Consensus 101 q~~dndn~~~e~---S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 101 GAQQLDENYGHV---STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444332 245667777777666555555577888888888888888755443
No 197
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=51.64 E-value=64 Score=24.50 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQF 262 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL 262 (401)
-.|..+|..|+.||..|.+-+
T Consensus 13 YaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444
No 198
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.58 E-value=21 Score=36.04 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
|...+..|..++..+++++..+..|+..|+.++..|+.++...++
T Consensus 40 l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 40 LSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555666666666666666644443
No 199
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=51.24 E-value=53 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
|.-+...|..||+.|+.-+++=+...+.+|.+|.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666555555556666554
No 200
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=50.92 E-value=1e+02 Score=25.16 Aligned_cols=49 Identities=6% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..+.++.++..++.++..+..++..|+.++..+..+=..+..++....+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333333333333333
No 201
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=50.89 E-value=24 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..|..+...|..+|..|..+++.|+.-|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455566667778888888888887644
No 202
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.63 E-value=98 Score=25.00 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
...+.|+.++..++.++..+..++..|+.++..+..+=..+..++..+..++
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554444444444333444444443333
No 203
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=50.39 E-value=83 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDA 265 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L 265 (401)
++|+.+|..|+..-.++...|-+|
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDL 29 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDL 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444444444433
No 204
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=49.79 E-value=1.4e+02 Score=26.53 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
+..+++||.++..-+..+..+...|...-..+..+...+..|.-+
T Consensus 104 Ek~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~ 148 (155)
T 2efr_A 104 EKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 205
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=48.92 E-value=95 Score=24.35 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|...+..+..||.++.+++. ++....+.|..|..=--.|-.+|.+.|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~-------e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRA-------RMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544 4444444555555444556666766654
No 206
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.76 E-value=43 Score=22.55 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 015739 246 LQVERLKGENA 256 (401)
Q Consensus 246 ~qV~~Le~EN~ 256 (401)
+++..|+.|..
T Consensus 9 qeiaalkkeia 19 (33)
T 4dzn_A 9 QEIAALKKEIA 19 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 207
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.59 E-value=1.2e+02 Score=25.47 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.+.+..+..|......|..++..+..++......|..|...-..|...+..+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666665555555554444333
No 208
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=48.49 E-value=41 Score=33.02 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+|+++|+.++++|+.+..+|..++..-. ........=++|.++++.+..++..++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRP-ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 306 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666666666666666655443210 00111222255777788887777777666543
No 209
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.42 E-value=22 Score=24.61 Aligned_cols=28 Identities=4% Similarity=0.172 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
+..|..+...+..+|..|..++..|+.-
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3455667777788889999999888753
No 210
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=48.20 E-value=69 Score=26.91 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 231 RRSRKRKQAHMQELE------L-QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 231 RRSR~RKk~~L~eLE------~-qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.-|..|+.+|.+-- . -.+.|+.-..+|+.++..|..+-=.++..-..-.-+|..|+.+|..+
T Consensus 20 q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 20 QTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 334455666776511 1 23456667777777777776665556555555666788888887654
No 211
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.18 E-value=75 Score=22.97 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
+..|+..+..+..+-..+..++..+..++..+..+=...+.++..|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655656666666665555555544444445555555443
No 212
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.82 E-value=1.3e+02 Score=26.65 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHhh
Q 015739 285 ALRAKVRLAEDVVS 298 (401)
Q Consensus 285 ~Lrakvk~aE~lv~ 298 (401)
+|.+-++-...||.
T Consensus 102 ELEADLKEKDsMVe 115 (167)
T 4gkw_A 102 ELEADLKEKDSMVE 115 (167)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHhHHhhhhHHHH
Confidence 34444444444443
No 213
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.01 E-value=26 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+.|..-+..|+.||.+|+.++.++-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888887776553
No 214
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.74 E-value=29 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~ 263 (401)
.....++.|+.+|..|..|+.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 444556666666666666554
No 215
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.83 E-value=73 Score=30.03 Aligned_cols=39 Identities=5% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~ 295 (401)
.+++++..+++++.....|+..+.++++..|+++..+.+
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555556666666666666666555443
No 216
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.68 E-value=26 Score=24.28 Aligned_cols=27 Identities=4% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+..|..+...+..+|..|..++..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566667777888888888888865
No 217
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.05 E-value=18 Score=28.17 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYK 260 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~ 260 (401)
..||..|+.++..|+.++..|++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666665554
No 218
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=45.02 E-value=98 Score=24.27 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVL 279 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L 279 (401)
|+.+.+.++.....|..++..++........|-+.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554433333333
No 219
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=44.66 E-value=66 Score=26.03 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 015739 215 IDLKRIRRMVS 225 (401)
Q Consensus 215 ~e~KR~RR~ls 225 (401)
.+.|+.-|+++
T Consensus 18 ~eLkkevkKL~ 28 (81)
T 3csx_A 18 ADLKKKVRKLN 28 (81)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 220
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.64 E-value=56 Score=33.21 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
+|.++||.++..|+.....-...|. .|+..=+.++.++.+|+-.+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir-------~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRIN-------LLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4455666655555543333222333 33333344444555554444
No 221
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=44.59 E-value=36 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 015739 267 QQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 267 qq~~~l~~ENr~LKaqve~Lrak 289 (401)
.+.+.+.+.|-.-|+.++.||.|
T Consensus 8 krvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 8 KRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 33445556667777777777765
No 222
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=44.59 E-value=84 Score=29.06 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKG-------ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~-------EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|.+|+--.+....+++.|+. .......++...++.|..+ |..|+.++..|-+
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~l---N~~L~eELP~l~~ 197 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF---NVDLQEELPSLWS 197 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45555555666677777662 2334556666677777666 8999999988754
No 223
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.51 E-value=18 Score=23.59 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 250 RLKGENATLYKQFTDAA 266 (401)
Q Consensus 250 ~Le~EN~~L~~qL~~L~ 266 (401)
.|+..|..|++++..|.
T Consensus 4 rlkqknarlkqeiaale 20 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 44445555555544443
No 224
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.38 E-value=53 Score=26.05 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 015739 265 AAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~L 286 (401)
+..++.....+-+.|+.++..+
T Consensus 45 LEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444445555555444
No 225
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.29 E-value=1.6e+02 Score=27.22 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=9.9
Q ss_pred CCCChhhHHHHHhccc
Q 015739 85 QDGHDQHLSFAFKNHR 100 (401)
Q Consensus 85 ~~~dp~~yn~~~k~~l 100 (401)
-++...+|-..++..|
T Consensus 59 ~~~~~eey~~~l~~aL 74 (213)
T 1ik9_A 59 MAMEKGKYVGELRKAL 74 (213)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3455666777776665
No 226
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.53 E-value=98 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~q 267 (401)
++.+|..+-..|..++..|+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 227
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.96 E-value=38 Score=23.25 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
+|..+...+..+|..|..+++.|+.-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44555566667778888888887653
No 228
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.69 E-value=66 Score=28.97 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 015739 269 YKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 269 ~~~l~~ENr~LKaqve~Lr 287 (401)
+..+..|-..|+.++...|
T Consensus 115 I~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555543
No 229
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=42.48 E-value=13 Score=27.51 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATL 258 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L 258 (401)
..|+.+||.+|+.|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999998888765544
No 230
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.20 E-value=1.5e+02 Score=26.61 Aligned_cols=9 Identities=0% Similarity=0.150 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 015739 216 DLKRIRRMV 224 (401)
Q Consensus 216 e~KR~RR~l 224 (401)
|.+.+-|.|
T Consensus 71 EQq~ql~~I 79 (175)
T 3lay_A 71 EQQATAQKI 79 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 231
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=42.12 E-value=9.5 Score=33.41 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 015739 275 NNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~ 292 (401)
+|..|+-+++.+++.++|
T Consensus 56 ~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 56 QVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555444443
No 232
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.74 E-value=1.5e+02 Score=27.81 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 015739 262 FTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLT 303 (401)
Q Consensus 262 L~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~~~t 303 (401)
+...+.++..+..+=..+++++..++.++..++..+....+.
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~ 158 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKIT 158 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 344445555555555666777777777777777665554443
No 233
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.60 E-value=93 Score=32.15 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHH-hHHHHHHHHHHHHHHHHHHhHh
Q 015739 273 NTN-NRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 273 ~~E-Nr~LKaqve~Lrakvk~aE~lv 297 (401)
..+ -+.|+.++..|..++..+++-+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5667777777777776665444
No 234
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.97 E-value=1.9e+02 Score=29.89 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDA-----AQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L-----~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
+.++..+.+++..|..+..+.+++...+.++ ...+..|...=..|+.+|..|+.++......+.
T Consensus 131 k~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 131 VKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344456666666666666655555544432 234455555566789999999998887766654
No 235
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.95 E-value=87 Score=29.26 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 248 VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 248 V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
+++|+.+.-....+..+|+..+..+.+||..|+..+..|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3445555555555666666666677777777777777664
No 236
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.79 E-value=50 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
.|...+.+||..+..-..++.+|+.++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888887777777766666554
No 237
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=40.35 E-value=55 Score=27.91 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYK 260 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~ 260 (401)
.+.+|+.+|+.++..+.+|+.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666655553
No 238
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.21 E-value=75 Score=31.83 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYK----------EANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~----------~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.+|..+...++.+-..|+.+-..+.+++. .+..+=+.|+.++..|.++++.+++-+..
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444432 33455566777777777777666655433
No 239
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.16 E-value=1.2e+02 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 015739 276 NRVLKSDVEALRAKV 290 (401)
Q Consensus 276 Nr~LKaqve~Lrakv 290 (401)
-..|+..++.|+.++
T Consensus 58 i~elrr~iq~L~~el 72 (77)
T 3trt_A 58 STEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 240
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.01 E-value=1.9e+02 Score=25.23 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
-|.++.|-||.-.- -..|..||.++...+.....--.++..+.+++..+..+-.....+++....++.-++.-+
T Consensus 37 eR~~k~lE~r~~~d------eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 37 ERGMKVIESRAQKD------EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp THHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccc------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677776533 345677777777766666666666666666666666666666666666666666555444
Q ss_pred h
Q 015739 298 S 298 (401)
Q Consensus 298 ~ 298 (401)
.
T Consensus 111 ~ 111 (147)
T 2b9c_A 111 K 111 (147)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=39.68 E-value=1.8e+02 Score=30.51 Aligned_cols=7 Identities=57% Similarity=0.510 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 015739 227 RESARRS 233 (401)
Q Consensus 227 RESARRS 233 (401)
+++|++-
T Consensus 496 ~e~~~~~ 502 (592)
T 1f5n_A 496 AESAQAS 502 (592)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 242
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.52 E-value=62 Score=26.26 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
.+++.+++.+...|+..|..|..++.+|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 45688899999999999999999998776543
No 243
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=39.33 E-value=1e+02 Score=26.84 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 015739 280 KSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 280 Kaqve~Lrakvk~aE~lv~~ 299 (401)
|.+...+.+++..++.++.+
T Consensus 52 k~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555
No 244
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.21 E-value=96 Score=22.67 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 255 NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 255 N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
|.-|++++..|+....+++.+.+.|..-+..||..+..+|
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 245
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.21 E-value=42 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739 268 QYKEANTNNRVLKSDVEALRAKVRLAEDVVS 298 (401)
Q Consensus 268 q~~~l~~ENr~LKaqve~Lrakvk~aE~lv~ 298 (401)
-...++.+|..|..++..|+..+..+|+-|+
T Consensus 25 ivarlendnanlekdianlekdianlerdva 55 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLERDVA 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhhc
Confidence 3345677888888888888887777776554
No 246
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.85 E-value=1.4e+02 Score=23.54 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
-...+..+..++..|+.+...++.++....+.|..|..=--.|-.+|.+.|.
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445677777777777777788888877777888887767777788888764
No 247
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=38.61 E-value=1.7 Score=36.90 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 015739 268 QYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 268 q~~~l~~ENr~LKaqve~Lrakv 290 (401)
+...|+.++..|..+++.|....
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En 81 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASEN 81 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555554433
No 248
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=38.47 E-value=1.7e+02 Score=24.41 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 249 ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 249 ~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
+.|+....+|..++..|..+-=.++..-..-.-+|..|+.+|..+
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 356666666776666665554455555555556777787777544
No 249
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.23 E-value=45 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 015739 271 EANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 271 ~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.++-||..|.+++..|.+|+..
T Consensus 4 alefendaleqkiaalkqkias 25 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHH
Confidence 5677888899999988888754
No 250
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.19 E-value=1.6e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 015739 265 AAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
|.+++..+..|+..||.+.+.|+
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 251
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=37.56 E-value=99 Score=28.79 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK 280 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK 280 (401)
+.+....+-....||..|..+...++++..-...=-++|-
T Consensus 117 ~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLD 156 (214)
T 2cly_A 117 LVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLD 156 (214)
T ss_dssp HTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444566777777777666665544433334443
No 252
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=37.40 E-value=1.2e+02 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 015739 267 QQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 267 qq~~~l~~ENr~LKaqve 284 (401)
..|..|..||..++.++.
T Consensus 140 dSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 140 DSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhHHHHHH
Confidence 334444445544444433
No 253
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=37.33 E-value=1.3e+02 Score=26.03 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKG-ENATLYKQFTDAA--------QQYKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 241 L~eLE~qV~~Le~-EN~~L~~qL~~L~--------qq~~~l~~ENr~LKaqve~Lrakvk 291 (401)
++.|+.+++.|+. +..++...+.... ..|+....+-..+..++..|+.++.
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~ 70 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 70 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666654 3444444444332 2334444444444445555554443
No 254
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.73 E-value=71 Score=27.24 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 265 AAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 265 L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+.++...+..+=..|+..+..|..++...+.++..
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333344444445555555565666555555444
No 255
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=36.01 E-value=86 Score=28.10 Aligned_cols=44 Identities=32% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
+++..-|.-.+.+=++|++||.||..|...|+ .|..+...+.++
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk----nLv~RN~~~e~~ 51 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFK----NLVQRNRHAEQQ 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
No 256
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.62 E-value=2.5e+02 Score=25.87 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~ 264 (401)
++++..|..+++.|+.+...|..++..
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555443
No 257
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=35.25 E-value=1.2e+02 Score=31.55 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
.+=.+|.++||.++..|+.....-...|..|+.-+ +.++.++.+|+--+...-+.|+.
T Consensus 107 n~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l-------~~q~skIQRLE~dI~~q~~~Cr~ 164 (491)
T 1m1j_A 107 ENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSI-------QEQVVEMKRLEVDIDIKIRACKG 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467888899888888765444335555444333 55777777887777777777666
No 258
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.93 E-value=1.9e+02 Score=24.85 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
.+|++...|+|.++++++.+...|.+++. .+=..-+.+++.++.+|-|
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~e----------se~~~kkK~le~~~~kV~m 104 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEVE----------AEHNTRTTKIEKDKNLVIM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766655554443 3334456677777777744
No 259
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=34.79 E-value=2.5e+02 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccc
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSVGSL 302 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~~~~ 302 (401)
..++++++.++++++.++..+....+
T Consensus 108 ~~a~a~l~~a~a~l~~a~~~l~~~~I 133 (277)
T 2f1m_A 108 QQANAAVTAAKAAVETARINLAYTKV 133 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 44555566666666666655555433
No 260
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.74 E-value=41 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLY 259 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~ 259 (401)
+++..|+.++..|+.|-..|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 261
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.66 E-value=2.5e+02 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 275 NNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
+-..+..++..|+.+++..+.++..
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666655544
No 262
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.83 E-value=23 Score=33.45 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
++..+.+.+..++..+..||+.|+++++.|++++..
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555566666677777777777666543
No 263
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.81 E-value=1.5e+02 Score=27.51 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..++++++.++++++.++..+..
T Consensus 131 ~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 131 GTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Confidence 34444455555544444444433
No 264
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.78 E-value=2e+02 Score=27.17 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444
No 265
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.63 E-value=55 Score=27.95 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+|..+|+.|..|+..|.+++..+++++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665555444
No 266
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=33.58 E-value=95 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+..|..+|+.|+..|-.-+.++..|..++
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44566677777777766666666555443
No 267
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=33.54 E-value=1.4e+02 Score=27.37 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 232 RSRKRKQAHMQELELQVERLKG-------ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 232 RSR~RKk~~L~eLE~qV~~Le~-------EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.-|.+|+--.+....+|+.|+. .-.....++...++.|..+ |..|+.++..|-.
T Consensus 132 ~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~l---N~~L~~eLP~l~~ 192 (237)
T 4avm_A 132 AKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDL---NQELLEELPILYN 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3345566556666677776643 2233445566666666665 8999999988744
No 268
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=33.45 E-value=2.1e+02 Score=23.81 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l 272 (401)
-++-+-||.-=..+.++|+.-+..|+.||..-.+++.+++.++..+
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666556668888889999999998888888887777543
No 269
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.27 E-value=1.3e+02 Score=30.50 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN---NRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~E---Nr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+.+|..+...++.+-..|+.+...+++++..+..+ -..|++++..|..+++.++..+..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888887777665332 357888888888888888766555
No 270
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.77 E-value=3.8e+02 Score=26.67 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 015739 277 RVLKSDVEALRAK 289 (401)
Q Consensus 277 r~LKaqve~Lrak 289 (401)
+.|.+++.++..+
T Consensus 81 ~~~~~~~~~~~~~ 93 (421)
T 1ses_A 81 KRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 271
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.68 E-value=1.1e+02 Score=30.08 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~ 264 (401)
||..|...+.+...|..++..
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHH
Confidence 333333333333334333333
No 272
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=32.55 E-value=1.4e+02 Score=27.50 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739 234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL 286 (401)
Q Consensus 234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L 286 (401)
+.||.+.++-|..++..|+.|-..|..++. .|..|..+++.+
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~-----------~N~~lG~~vea~ 55 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS-----------ANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHH
Confidence 467788888899999998888887776664 455666655544
No 273
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.46 E-value=87 Score=25.07 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---Hhhhcccccc
Q 015739 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED---VVSVGSLTCG 305 (401)
Q Consensus 251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~---lv~~~~~t~~ 305 (401)
++..-..+..++..+..++..+..+=..|+.++..|...+.+++. .|+. |+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPv----Cg 54 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPV----CG 54 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTT----TC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----CC
No 274
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.45 E-value=47 Score=32.12 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
++++.|+.+.+.|+.|.++|.++...+.. .....-+.|+..+.-.++.+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k---~n~~rl~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANK---ANAERLKRLQKSADLYKDRL 233 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555444433332 12333344444444444433
No 275
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.73 E-value=1.6e+02 Score=30.43 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANT---NNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~---ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
..+.+|..+...++.+-..|+.+...+++++..+.. +-..|++++..|..+++.++..+..
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666665555544433 2346888888888888877766554
No 276
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=31.66 E-value=1.1e+02 Score=23.88 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEAN 273 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~ 273 (401)
+.+++..+++.|+.|..-...+|.++.--++...
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555566666655555556655544444433
No 277
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=31.44 E-value=2.4e+02 Score=23.82 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 221 RRMVSNRESARRSRKRKQAHMQELE---LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 221 RR~lsNRESARRSR~RKk~~L~eLE---~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
+|.-+|+++-+.--++=......|. .++...+.+..+=.+++..+.-|...|...|..|.-++..|..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4666777776633332222222221 2222222222222333334444555556666666666665543
No 278
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.37 E-value=97 Score=28.35 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+++++-|=.++..|+.+|..|.+++..|+++.
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677787888888888877776555544444
No 279
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.21 E-value=52 Score=26.90 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR 287 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr 287 (401)
..+..+...+..|+.+-..++.++....+.|..|..=--.|-.+|.+.|
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555566555544445555555543
No 280
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.20 E-value=3.8e+02 Score=26.18 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 229 SARRSRKRKQAHMQELELQVERLKG------ENATLY--KQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 229 SARRSR~RKk~~L~eLE~qV~~Le~------EN~~L~--~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
-+++-=..|.+.+..|+..+..-+. +..-|. .-+.+..+++..+...-+.|.++.+-|.++|
T Consensus 320 ~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~ 389 (406)
T 4dyl_A 320 VATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444445566666666666554422 100111 1123344444455555555555555555443
No 281
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.96 E-value=1.3e+02 Score=23.92 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
|..+...+...+..+..+=..|..++..|+.++
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344344444444344444444555554443
No 282
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.94 E-value=1.8e+02 Score=30.40 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH---HHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKEA-NTNNRVL---KSDVEALRAKVRLAE 294 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l-~~ENr~L---Kaqve~Lrakvk~aE 294 (401)
+.++..+-..++.||+.++++....+.+|... ..-|..| ++++..-.++++.-+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777766665443 2223332 344444444444443
No 283
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.81 E-value=1.8e+02 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015739 276 NRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 276 Nr~LKaqve~Lrakvk~a 293 (401)
|+.|..+...++.....+
T Consensus 40 nKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 40 TKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHH
Confidence 455555554444444333
No 284
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.68 E-value=5.1e+02 Score=27.41 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENAT 257 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~ 257 (401)
++.+|.+.++++.|...
T Consensus 316 ~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 316 VEAAERNYERARAELNQ 332 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 285
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.51 E-value=1.2e+02 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
+.|+.+++.|+.+-..++.+++.+.+.+
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443
No 286
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.42 E-value=2.1e+02 Score=26.57 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQ 261 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~q 261 (401)
.+|..++..+..+...++++
T Consensus 76 ~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 76 SEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 287
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.37 E-value=2e+02 Score=22.74 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
.|+..++.|..-|..|+. +|.....-...|+.+++.++..+..|..++..+.
T Consensus 14 ~Kq~EI~rLnvlvgslR~-------KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~ 65 (74)
T 2q6q_A 14 EKQNEIFELKKIAETLRS-------KLEKYVDITKKLEDQNLNLQIKISDLEKKLSDAN 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccc
Confidence 355556666655555543 3433333344556677888888888877764443
No 288
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.73 E-value=4.5e+02 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 015739 278 VLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 278 ~LKaqve~Lrakvk~aE~l 296 (401)
.++.+|+.|+++|..++..
T Consensus 116 ~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 116 MNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4455566666655555443
No 289
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.64 E-value=1.1e+02 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 015739 277 RVLKSDVEALR 287 (401)
Q Consensus 277 r~LKaqve~Lr 287 (401)
..||-++..|.
T Consensus 19 aalkfeiaalk 29 (33)
T 4dzn_A 19 AALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555553
No 290
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.99 E-value=87 Score=21.64 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 263 TDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 263 ~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
.+|..+...+..+|..|..++..|+.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455566666777777777777764
No 291
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.86 E-value=2.1e+02 Score=22.39 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=47.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
|.++.-+.++.. ....|-...+.++..++..|+.+-..++.++....+.|..|..=--.|-.+|.+.|.
T Consensus 7 ~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 7 KGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444444333 333444556788888888888888888888888888888887766677777777654
No 292
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.80 E-value=1.9e+02 Score=21.84 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQQYKE 271 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~ 271 (401)
+++|...+..-..+....+.++..++..++.
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~ 67 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQS 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444445555444433
No 293
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.76 E-value=75 Score=20.56 Aligned_cols=9 Identities=56% Similarity=0.671 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 015739 246 LQVERLKGE 254 (401)
Q Consensus 246 ~qV~~Le~E 254 (401)
.+|-.|+.|
T Consensus 7 devgelkge 15 (27)
T 3v86_A 7 DEVGELKGE 15 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 333333333
No 294
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.51 E-value=1.7e+02 Score=21.35 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL 262 (401)
+-|-|+=.|-+..+++||.++..-+.++..+..++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555554444444444433
No 295
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.24 E-value=50 Score=27.86 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 015739 246 LQVERLK 252 (401)
Q Consensus 246 ~qV~~Le 252 (401)
.+|+.|+
T Consensus 6 ~~~~~l~ 12 (182)
T 3kqg_A 6 AQIPELK 12 (182)
T ss_dssp -------
T ss_pred hhHHHHH
Confidence 3333333
No 296
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.08 E-value=3.5e+02 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhhc
Q 015739 266 AQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVG 300 (401)
Q Consensus 266 ~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~~ 300 (401)
++++..+..+=...+++++.++++++.++..+...
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666777888888887777665553
No 297
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.85 E-value=2.1e+02 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA 293 (401)
Q Consensus 257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a 293 (401)
++++.|..-.-++++|..=|..|..++..|+.+++.+
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 3444444445555555556666666666666655443
No 298
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.61 E-value=1.2e+02 Score=25.35 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE 294 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE 294 (401)
+-+.+||.-|.+|+...-.|..-+...++-..-+ +.++..+..-++||+.+.
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~----k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSAYRRGVELA----RVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3477888899999887777776666554444333 556666666666766553
No 299
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=27.33 E-value=3.2e+02 Score=24.09 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhH
Q 015739 275 NNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 275 ENr~LKaqve~Lrakvk~aE~l 296 (401)
|=..+..+...|..+++.++.|
T Consensus 85 ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 85 KRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555433
No 300
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.30 E-value=1.7e+02 Score=22.90 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAK 289 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak 289 (401)
|..+...+...+..+..+=..|+.++..|+.+
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444443
No 301
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.29 E-value=31 Score=33.91 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
.|..||.+|..++.+...|...+..++
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~ 31 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNN 31 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 455666677666666666665554443
No 302
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.06 E-value=2.8e+02 Score=26.21 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269 (401)
Q Consensus 218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~ 269 (401)
|+.|+++..+...-..+.=-...|..||+++...+.++.....+|..++++.
T Consensus 110 R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 161 (234)
T 3plt_A 110 RDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREK 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Confidence 4444455555532211111113567888888888888887788888776654
No 303
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.92 E-value=2.5e+02 Score=26.51 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 228 ESARRSRKRKQAHMQELELQVERLKGENA-TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 228 ESARRSR~RKk~~L~eLE~qV~~Le~EN~-~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
..|...|.|=..++++|..++..+-.+-. .|...+..++..+. .-+..|+.+++.+++++
T Consensus 165 ~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~---~~~~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 165 KNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLA---ELGGHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHh
Confidence 44555666666666666666654432221 11112222322222 22455666666666655
No 304
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=26.61 E-value=27 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 015739 235 KRKQAHMQELELQVERLK---GENATLYKQFTDAAQQYKEA 272 (401)
Q Consensus 235 ~RKk~~L~eLE~qV~~Le---~EN~~L~~qL~~L~qq~~~l 272 (401)
..|+..+++|..++.+++ ....-|+.|+......|..-
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aE 74 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE 74 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 346667777777666666 33334555555555444433
No 305
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=26.50 E-value=2.3e+02 Score=22.13 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=4.9
Q ss_pred HHHHhHHHHHHHH
Q 015739 272 ANTNNRVLKSDVE 284 (401)
Q Consensus 272 l~~ENr~LKaqve 284 (401)
+..+=..+|.+++
T Consensus 38 lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 38 LQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444333
No 306
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.24 E-value=1.2e+02 Score=20.41 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 015739 277 RVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv 297 (401)
+.|..-+++|+.+|..+|+.|
T Consensus 9 r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544
No 307
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.03 E-value=2.6e+02 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015739 247 QVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 247 qV~~Le~EN~~L~~qL~~L~ 266 (401)
+|..|+.+|..|..++..+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 308
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.03 E-value=2e+02 Score=26.00 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739 231 RRSRKRKQAHMQELELQV-ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV 296 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV-~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l 296 (401)
.+-|.+.++++......+ ..|+.-...|......+......++.+=..|...+..|+++....+.+
T Consensus 26 ~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~ 92 (174)
T 2p22_A 26 REDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQF 92 (174)
T ss_dssp HHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444444433 333444444444444444444444455555555555555544333333
No 309
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.89 E-value=3.5e+02 Score=24.01 Aligned_cols=15 Identities=33% Similarity=0.186 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENAT 257 (401)
Q Consensus 243 eLE~qV~~Le~EN~~ 257 (401)
+|+.+...|+.+...
T Consensus 37 ~le~e~~kl~~e~~i 51 (146)
T 2xnx_M 37 EKELEEKKKALELAI 51 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 310
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.45 E-value=2.6e+02 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
.|..|+.+++.-+.+-..++.++..+.+.+..-..|=..|+..+.
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555555555555555555555555544443333333444333
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.25 E-value=4.4e+02 Score=28.11 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGE 254 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~E 254 (401)
-..+++|+.++.+|+.|
T Consensus 400 p~~l~~~~~~~~~~~~~ 416 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIE 416 (854)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34566666666655544
No 312
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.22 E-value=74 Score=32.05 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVERLKGENATL 258 (401)
Q Consensus 238 k~~L~eLE~qV~~Le~EN~~L 258 (401)
++.+.++|.++..+......|
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l 44 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRL 44 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556666655544443333
No 313
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.14 E-value=3e+02 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 246 LQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 246 ~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
.++..|+.+...++.++....+.|..|..=--.|-.+|.+
T Consensus 84 ~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 84 EMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333333333
No 314
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=24.98 E-value=2.7e+02 Score=24.50 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=37.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739 222 RMVSNRESARRSRKRKQAHMQELELQVERLKGE---------NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA 288 (401)
Q Consensus 222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~E---------N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra 288 (401)
..+..=....+-|.+|.-..+....++..|+.. ......++...++.|..+ |..|+.++..|.+
T Consensus 126 ~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~l---n~~L~~eLp~l~~ 198 (244)
T 1uru_A 126 GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEIL---NTELHDELPALYD 198 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHH
Confidence 344444444444555555556666666666532 112445566666666655 7889988888764
No 315
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=24.84 E-value=1.9e+02 Score=24.96 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 015739 269 YKEANTNNRVLKSDVEALRAKVR 291 (401)
Q Consensus 269 ~~~l~~ENr~LKaqve~Lrakvk 291 (401)
|+....+-..|..++..|+.++.
T Consensus 48 y~aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 48 LEAAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555443
No 316
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.79 E-value=2.6e+02 Score=22.14 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 015739 279 LKSDVEALRAK 289 (401)
Q Consensus 279 LKaqve~Lrak 289 (401)
|..+++.|+..
T Consensus 68 LE~kvesL~eE 78 (86)
T 3swk_A 68 LERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 317
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.65 E-value=1.4e+02 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 239 AHMQELELQVERLKGENATLYKQFTDAA 266 (401)
Q Consensus 239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~ 266 (401)
+.+.+|...|+.|+.|..-...+|.++.
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788888887777777776554
No 318
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=24.32 E-value=23 Score=27.83 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015739 241 MQELELQVERLKGENA---------------------TLYKQFTDAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~---------------------~L~~qL~~L~qq~~~l~~ENr~LKaqve 284 (401)
+..||.++.+|+.|-+ .|++++..+.=+++.+...|..||..++
T Consensus 15 lqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 15 LQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 4567777777777653 4677777777788888888888777553
No 319
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.32 E-value=2.9e+02 Score=28.52 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=13.8
Q ss_pred HHH-HHHHHHHHHHHHhHhhh
Q 015739 280 KSD-VEALRAKVRLAEDVVSV 299 (401)
Q Consensus 280 Kaq-ve~Lrakvk~aE~lv~~ 299 (401)
+++ +..|..+++.++..+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~ 129 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQ 129 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666 77777777777765554
No 320
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.78 E-value=3.3e+02 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
|++|+.++...+.+-..-+++|.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333
No 321
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.55 E-value=1.3e+02 Score=26.45 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQF 262 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL 262 (401)
.||.++..++.....+..++
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~ 23 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRL 23 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555554444443333333
No 322
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.51 E-value=2.7e+02 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 230 ARRSRKRKQAHMQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL 262 (401)
|-|+-.+.++.++.||.++...+.++..+..+|
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555554443
No 323
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=23.46 E-value=42 Score=28.60 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 015739 264 DAAQQYKEANTNNRVLKSDVE 284 (401)
Q Consensus 264 ~L~qq~~~l~~ENr~LKaqve 284 (401)
+|..++..|..||+.||.++.
T Consensus 12 eLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444556677777776654
No 324
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.45 E-value=3.3e+02 Score=22.89 Aligned_cols=65 Identities=6% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739 218 KRIRRMVSNR----ESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD 282 (401)
Q Consensus 218 KR~RR~lsNR----ESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq 282 (401)
+..|+.+... .....-+.-=++++.+|+.++..|+.....|...+...++.......+...+..+
T Consensus 63 ~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 131 (142)
T 3gp4_A 63 EALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 131 (142)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
No 325
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.41 E-value=3e+02 Score=22.34 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=5.9
Q ss_pred HHhHHHHHHHH
Q 015739 224 VSNRESARRSR 234 (401)
Q Consensus 224 lsNRESARRSR 234 (401)
..-||+|+.-+
T Consensus 22 FgKrEaA~Ee~ 32 (84)
T 1gmj_A 22 FGKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHhHHH
Confidence 34456666554
No 326
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.38 E-value=1.9e+02 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHH-------HHHHHHhHhhh
Q 015739 273 NTNNRVLKSDVEALRA-------KVRLAEDVVSV 299 (401)
Q Consensus 273 ~~ENr~LKaqve~Lra-------kvk~aE~lv~~ 299 (401)
..|...+..+++.|++ ||+..|.+|..
T Consensus 15 k~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 15 KLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444444 55555555544
No 327
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=23.08 E-value=2.3e+02 Score=24.37 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 015739 257 TLYKQFTDAAQQYK 270 (401)
Q Consensus 257 ~L~~qL~~L~qq~~ 270 (401)
.|..++..+...|.
T Consensus 88 ~L~~~f~~~~~~fq 101 (196)
T 1fio_A 88 NSRQRFLKLIQDYR 101 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 328
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.06 E-value=65 Score=32.58 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739 242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV 299 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~ 299 (401)
++|+.++..+..+ +|..+...+..+...+..|+..|+.+...|+.+++...+-+..
T Consensus 16 ~~l~~ei~~~~~~--~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 16 DELDQEILNLSTQ--ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 329
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.70 E-value=3e+02 Score=22.80 Aligned_cols=49 Identities=20% Similarity=0.115 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGE----NATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV 290 (401)
Q Consensus 242 ~eLE~qV~~Le~E----N~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv 290 (401)
.+.+.+|+.++.+ -..|+++...|.+...-+-.=.+.|..-+..|+.-|
T Consensus 28 ~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 28 KDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555543 234555555554444444444444555555554433
No 330
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.61 E-value=1.4e+02 Score=19.76 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015739 242 QELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 242 ~eLE~qV~~Le~EN~~L~~qL~ 263 (401)
+.||.+...|+...+.|.+++.
T Consensus 4 ealekkcaalesklqalekkle 25 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444443
No 331
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.46 E-value=2.4e+02 Score=26.87 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739 214 PIDLKRIRRMVSNRESARRSRKR-KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL 292 (401)
Q Consensus 214 ~~e~KR~RR~lsNRESARRSR~R-Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~ 292 (401)
....|+++.-+-++.--=--|+. =...+.|+..+|+.|..-...+..+|..++ .+-..|.-++..+..++.+
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE-------qdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE-------QNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHH
Confidence 44566666544433322222221 123566666777777666666666665444 4445555566666666655
Q ss_pred HHh
Q 015739 293 AED 295 (401)
Q Consensus 293 aE~ 295 (401)
+++
T Consensus 224 ~qE 226 (242)
T 3uux_B 224 LEE 226 (242)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 332
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.30 E-value=6.1e+02 Score=25.55 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739 258 LYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV 297 (401)
Q Consensus 258 L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv 297 (401)
|..++..++........+=+.|+..+..++.+++.++..+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333333333344556666666666666555443
No 333
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.21 E-value=2.9e+02 Score=21.72 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 241 MQELELQVERLKGENATLYKQFTDAAQ 267 (401)
Q Consensus 241 L~eLE~qV~~Le~EN~~L~~qL~~L~q 267 (401)
|..|+.+++.-+.+-..++.++..+.+
T Consensus 23 v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 23 LSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333334444443333
No 334
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.20 E-value=3.4e+02 Score=22.59 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa 281 (401)
|-++.-..+.|...|+.++..|++++.....--..|..
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~ 46 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGR 46 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445566677777777766666554444334433
No 335
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.12 E-value=3.3e+02 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 243 ELELQVERLKGENATLYKQFT 263 (401)
Q Consensus 243 eLE~qV~~Le~EN~~L~~qL~ 263 (401)
.|+.++..++.+...+..++.
T Consensus 106 ~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 106 KMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 336
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.89 E-value=4.5e+02 Score=24.36 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015739 278 VLKSDVEALRAKVRLAE 294 (401)
Q Consensus 278 ~LKaqve~Lrakvk~aE 294 (401)
.++++++.++++++.++
T Consensus 126 ~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 126 NAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 337
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=21.87 E-value=1.9e+02 Score=22.39 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERL 251 (401)
Q Consensus 216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~L 251 (401)
++|+.+|+...-+..||.|.|=...+.+|..-|-..
T Consensus 3 ~~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 3 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 345566667777888888888888888888877654
No 338
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.79 E-value=52 Score=34.34 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHh
Q 015739 215 IDLKRIRRMVSN 226 (401)
Q Consensus 215 ~e~KR~RR~lsN 226 (401)
+++|.+|.+.++
T Consensus 310 ~e~~~~~~~e~~ 321 (575)
T 2i1j_A 310 REEKLAKQAQRE 321 (575)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 339
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=21.64 E-value=2.5e+02 Score=28.95 Aligned_cols=36 Identities=3% Similarity=0.021 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccccccccccc
Q 015739 277 RVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSH 313 (401)
Q Consensus 277 r~LKaqve~Lrakvk~aE~lv~~~~~t~~~n~l~~~~ 313 (401)
..|+.++..++++++.+...... .|...+++|+.++
T Consensus 378 ~~l~~~~~~~~~~~~~~~~~~~~-~fn~~fGslfRtg 413 (470)
T 4g63_A 378 HDLQLQISTVDLQISRLLQEQNS-FYNPKWERVFRAG 413 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSCTTTCCSSEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccchhhhccCCC
Confidence 34555555555555444433333 1433455565544
No 340
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.47 E-value=3.7e+02 Score=22.73 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 015739 279 LKSDVEALRAKVRLAE 294 (401)
Q Consensus 279 LKaqve~Lrakvk~aE 294 (401)
-+.+|..|+.+++-.|
T Consensus 43 ~k~qV~~L~~~~q~sE 58 (112)
T 1x79_B 43 SSHQISALVLRAQASE 58 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 341
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=21.17 E-value=2e+02 Score=19.59 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739 259 YKQFTDAAQQYKEANTNNRVLKSDVEA 285 (401)
Q Consensus 259 ~~qL~~L~qq~~~l~~ENr~LKaqve~ 285 (401)
+.++..+.++|.-++-.-..||+.+..
T Consensus 7 kekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 7 KEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333444444433
No 342
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.16 E-value=2.8e+02 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 240 HMQELELQVERLKGENATLYKQFTDAAQQ 268 (401)
Q Consensus 240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq 268 (401)
.+.+|+.++..|+.....+.+++..++++
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566655555555555555544433
No 343
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.37 E-value=3.1e+02 Score=22.94 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 231 RRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYK 270 (401)
Q Consensus 231 RRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~ 270 (401)
+-|=.+++.+-.+-..+|+.|+.|...|..+|.++.-+..
T Consensus 52 ~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 52 QESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 344
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.15 E-value=4.4e+02 Score=23.03 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 015739 238 QAHMQELELQVER 250 (401)
Q Consensus 238 k~~L~eLE~qV~~ 250 (401)
.+|...|+.+++.
T Consensus 85 ~eYn~rL~~E~~d 97 (152)
T 4fla_A 85 AEYNGRLAAELED 97 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 345
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=20.08 E-value=2e+02 Score=24.69 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739 236 RKQAHMQELELQVERLKGENATLYKQF 262 (401)
Q Consensus 236 RKk~~L~eLE~qV~~Le~EN~~L~~qL 262 (401)
+.++....++.+++.|..+-..|.+++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666665555555554443
No 346
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.04 E-value=1.3e+02 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015739 244 LELQVERLKGENATLYKQFTD 264 (401)
Q Consensus 244 LE~qV~~Le~EN~~L~~qL~~ 264 (401)
||..|..|..--++|.+++..
T Consensus 4 lee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444444444433
Done!