Your job contains 1 sequence.
>015740
MSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENS
TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN
MSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLN
DYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDE
EYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRIYHS
RKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEMSYEEYLEAHSRSIKQLCHP
VGGPSWSMWESSSKKQDNDSNSSFVMDKRHTRKRTHQSSQK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015740
(401 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2118046 - symbol:AT4G11970 "AT4G11970" species... 994 3.4e-100 1
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 327 1.9e-31 2
UNIPROTKB|Q96MU7 - symbol:YTHDC1 "YTH domain-containing p... 307 7.1e-28 2
RGD|621706 - symbol:Ythdc1 "YTH domain containing 1" spec... 307 7.6e-28 2
ZFIN|ZDB-GENE-041114-114 - symbol:ythdc1 "YTH domain cont... 298 4.9e-27 2
UNIPROTKB|F1NS70 - symbol:YTHDC2 "Uncharacterized protein... 303 1.6e-25 1
UNIPROTKB|F1RLG0 - symbol:YTHDC2 "Uncharacterized protein... 288 5.1e-24 1
MGI|MGI:2448561 - symbol:Ythdc2 "YTH domain containing 2"... 288 7.1e-24 1
UNIPROTKB|E2QZR7 - symbol:YTHDC2 "Uncharacterized protein... 287 8.4e-24 1
UNIPROTKB|F1MNU7 - symbol:YTHDC2 "Uncharacterized protein... 287 8.9e-24 1
UNIPROTKB|Q9H6S0 - symbol:YTHDC2 "Probable ATP-dependent ... 285 1.5e-23 1
FB|FBgn0027616 - symbol:YT521-B "YT521-B" species:7227 "D... 259 1.1e-19 1
ASPGD|ASPL0000015049 - symbol:AN10537 species:162425 "Eme... 170 5.7e-17 2
SGD|S000002782 - symbol:YDR374C "Putative protein of unkn... 209 3.6e-15 1
MGI|MGI:1917431 - symbol:Ythdf1 "YTH domain family 1" spe... 217 5.5e-15 1
CGD|CAL0002569 - symbol:orf19.1939 species:5476 "Candida ... 209 1.3e-14 1
UNIPROTKB|Q5A1Q7 - symbol:CaO19.1939 "Putative uncharacte... 209 1.3e-14 1
ZFIN|ZDB-GENE-040426-2786 - symbol:ythdf1 "YTH domain fam... 208 7.1e-14 1
UNIPROTKB|Q7Z739 - symbol:YTHDF3 "YTH domain family prote... 202 3.1e-13 1
MGI|MGI:1918850 - symbol:Ythdf3 "YTH domain family 3" spe... 202 3.1e-13 1
UNIPROTKB|Q9Y5A9 - symbol:YTHDF2 "YTH domain family prote... 193 3.1e-12 1
TAIR|locus:2161213 - symbol:ECT10 "evolutionarily conserv... 192 3.4e-12 1
TAIR|locus:2023807 - symbol:ECT7 "AT1G48110" species:3702... 191 6.2e-12 1
TAIR|locus:2089280 - symbol:ECT5 "AT3G13060" species:3702... 185 2.9e-11 1
TAIR|locus:2207405 - symbol:ECT8 "AT1G79270" species:3702... 168 1.7e-09 1
TAIR|locus:2088995 - symbol:ECT6 "AT3G17330" species:3702... 166 3.4e-09 1
TAIR|locus:2010494 - symbol:ECT9 "AT1G27960" species:3702... 164 4.8e-09 1
TAIR|locus:2092815 - symbol:ECT2 "evolutionarily conserve... 164 6.8e-09 1
TAIR|locus:2095938 - symbol:ECT1 "evolutionarily conserve... 157 1.9e-08 1
TAIR|locus:2159391 - symbol:ECT3 "AT5G61020" species:3702... 155 4.2e-08 1
TAIR|locus:2024286 - symbol:ECT11 "AT1G09810" species:370... 141 1.4e-06 1
>TAIR|locus:2118046 [details] [associations]
symbol:AT4G11970 "AT4G11970" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48848 UniGene:At.68491 IPI:IPI00541281
RefSeq:NP_192934.2 ProteinModelPortal:F4JPV2 SMR:F4JPV2
PRIDE:F4JPV2 EnsemblPlants:AT4G11970.1 GeneID:826804
KEGG:ath:AT4G11970 OMA:GIWATQV PhylomeDB:F4JPV2 Uniprot:F4JPV2
Length = 444
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 207/344 (60%), Positives = 248/344 (72%)
Query: 1 MSSDTAKENASVVDSSVTE-KHDVGNSDDPESSSYKANE-HRCPSLAKEAKAGHSNGQLE 58
MSSDTAKENASVVDSS+T+ K D+GNSDDPES+SY++ E H+ + + + + QLE
Sbjct: 1 MSSDTAKENASVVDSSLTDWKQDLGNSDDPESTSYRSKEDHKLSKVDVDRR--NFPDQLE 58
Query: 59 NSTDNNKGKL-YNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIF 117
++ N K Y TRYFIIKSLN+ NIQ+S+EK IWATQVMNEPILE AFH SG+VILIF
Sbjct: 59 SAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIF 118
Query: 118 SVNMSGFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKN 177
SVNMSGFFQGYA+M+S VGWRRD +WSQG GKNNPWGRSFKVKWLRL+ LPFQKTLHLKN
Sbjct: 119 SVNMSGFFQGYAEMLSPVGWRRDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTLHLKN 178
Query: 178 PLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSL 237
PLNDYKPVKISRDCQELP+DIGEALC LLD DG+ S RDD KR EP S
Sbjct: 179 PLNDYKPVKISRDCQELPEDIGEALCELLDANSCDDGLLNSSSRDDYSTKRSRAEPPSSS 238
Query: 238 GDEEYHKPPLHVPLGKTPMPYPSFLYQHQGGPSNFHLAQRCGGDAENLPFTSMSSKFSRI 297
GD+EY+ G TPM YP +Y +Q S FHLAQ+ G +S ++
Sbjct: 239 GDDEYNNNLW----GHTPMSYPPTVYPNQDDLSRFHLAQQRG--------YGVSPEY--- 283
Query: 298 YHSRKGNLSNLQVDCDLSSRYDFWGLSADSPLASTITEDDFLEM 341
H+ G SN + + D S R++ W L +SPLA+++T+DDFLEM
Sbjct: 284 LHTSPG-ASNSRTEQDKSLRFNSWCLPLESPLANSLTDDDFLEM 326
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 327 (120.2 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 68/136 (50%), Positives = 89/136 (65%)
Query: 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
RYF++KS N +N +LS+++ +WATQ NE L EAF + VILIFSVN + FQG A+M
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297
Query: 132 MSSVG-WRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
S +G + W +G +GR+F VKWL+L L F KT +L+NP N+ PVKISRD
Sbjct: 298 TSRIGGYIGGGNWKHEHGTAQ-YGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRD 356
Query: 191 CQELPQDIGEALCHLL 206
CQEL +GE L LL
Sbjct: 357 CQELEPSVGEQLASLL 372
Score = 48 (22.0 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 248 HVPLGKTPMPYPSFLYQHQGGPSNFHLAQRC-----GGDAEN 284
+ P G PM YP + GPSN +R GD +N
Sbjct: 548 NAPRGGRPMYYPPATSSARPGPSNRKTPERSDERGVSGDQQN 589
>UNIPROTKB|Q96MU7 [details] [associations]
symbol:YTHDC1 "YTH domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0016604 GO:GO:0000398 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK056430 EMBL:AC074378 EMBL:BC041119
EMBL:BC053863 EMBL:AB075846 IPI:IPI00144293 IPI:IPI00376222
RefSeq:NP_001026902.1 RefSeq:NP_588611.2 UniGene:Hs.175955 PDB:2YUD
PDBsum:2YUD ProteinModelPortal:Q96MU7 SMR:Q96MU7 IntAct:Q96MU7
STRING:Q96MU7 PhosphoSite:Q96MU7 DMDM:47606762 PaxDb:Q96MU7
PRIDE:Q96MU7 Ensembl:ENST00000344157 Ensembl:ENST00000355665
GeneID:91746 KEGG:hsa:91746 UCSC:uc003hdx.3 UCSC:uc003hdy.3
CTD:91746 GeneCards:GC04M069176 HGNC:HGNC:30626 HPA:HPA036462
HPA:HPA036463 neXtProt:NX_Q96MU7 PharmGKB:PA143485673
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
InParanoid:Q96MU7 OMA:VIHKMRH OrthoDB:EOG4ZW5BC PhylomeDB:Q96MU7
ChiTaRS:YTHDC1 EvolutionaryTrace:Q96MU7 GenomeRNAi:91746
NextBio:77419 Bgee:Q96MU7 CleanEx:HS_YTHDC1 Genevestigator:Q96MU7
GermOnline:ENSG00000083896 Uniprot:Q96MU7
Length = 727
Score = 307 (113.1 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 99/329 (30%), Positives = 146/329 (44%)
Query: 2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHS-- 53
+SD+ E+ S D SV SD+ + +A R S A E+ AG
Sbjct: 270 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 329
Query: 54 NGQLENS--------TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
+ +L +S T K L + R+F+IKS NH+N+ L+ K +W+T +NE L
Sbjct: 330 HEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 389
Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLR 163
AF ++ VILIFSV SG FQG+A++ S + W G + G FK+ W+
Sbjct: 390 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWIC 449
Query: 164 LNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT------ 217
LPF K+ HL NP N++KPVKI RD QE+ + G LC L + +D Q
Sbjct: 450 RRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRH 509
Query: 218 --SFHRDDLPAKRPCI-EPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQG---GPSN 271
H RP EP +G +H K + YP +Q G P
Sbjct: 510 KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRY 569
Query: 272 FHLAQRCGGDAENLPFTSMSSKFSRIYHS 300
+ +R G ++ + + R +H+
Sbjct: 570 QEVDRRFSGVRRDVFLNGSYNDYVREFHN 598
Score = 38 (18.4 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 331 STITEDDFLEMSYEEYL-EAHS 351
S + D FL SY +Y+ E H+
Sbjct: 577 SGVRRDVFLNGSYNDYVREFHN 598
>RGD|621706 [details] [associations]
symbol:Ythdc1 "YTH domain containing 1" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] RGD:621706 GO:GO:0016604 GO:GO:0000398
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 CTD:91746
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
OrthoDB:EOG4ZW5BC EMBL:D78303 EMBL:AF144731 IPI:IPI00196301
IPI:IPI00213467 RefSeq:NP_596914.1 UniGene:Rn.48752
ProteinModelPortal:Q9QY02 SMR:Q9QY02 STRING:Q9QY02
PhosphoSite:Q9QY02 PRIDE:Q9QY02 GeneID:170956 KEGG:rno:170956
UCSC:RGD:621706 InParanoid:Q9QY02 NextBio:621483
ArrayExpress:Q9QY02 Genevestigator:Q9QY02
GermOnline:ENSRNOG00000001996 Uniprot:Q9QY02
Length = 738
Score = 307 (113.1 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 94/293 (32%), Positives = 133/293 (45%)
Query: 2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHS-- 53
+SD+ E+ S D SV SD+ + +A R S A E+ AG
Sbjct: 273 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 332
Query: 54 NGQLENS--------TDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
+ +L +S T K L + R+F+IKS NH+N+ L+ K +W+T +NE L
Sbjct: 333 HEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 392
Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLR 163
AF ++ VILIFSV SG FQG+A++ S + W G + G FK+ W+
Sbjct: 393 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWIC 452
Query: 164 LNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT------ 217
LPF K+ HL NP N++KPVKI RD QE+ + G LC L + +D Q
Sbjct: 453 RRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRH 512
Query: 218 --SFHRDDLPAKRPCI-EPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQG 267
H RP EP +G +H K + YP +Q G
Sbjct: 513 KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPG 565
Score = 38 (18.4 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 331 STITEDDFLEMSYEEYL-EAHS 351
S + D FL SY +Y+ E H+
Sbjct: 588 SGVRRDVFLNGSYNDYVREFHN 609
>ZFIN|ZDB-GENE-041114-114 [details] [associations]
symbol:ythdc1 "YTH domain containing 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-041114-114 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:91746 HOVERGEN:HBG055528 EMBL:BC085378
IPI:IPI00509525 RefSeq:NP_001007411.1 UniGene:Dr.84175
ProteinModelPortal:Q5U3V6 SMR:Q5U3V6 PRIDE:Q5U3V6 GeneID:492769
KEGG:dre:492769 InParanoid:Q5U3V6 NextBio:20865266 Bgee:Q5U3V6
Uniprot:Q5U3V6
Length = 679
Score = 298 (110.0 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 88/260 (33%), Positives = 127/260 (48%)
Query: 2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENST 61
+SD+ E+ S D H SD S S K +E + S ++ + N +L++
Sbjct: 243 ASDSRSESVSFSDGESV--HSASGSD--ASGSEKKHE-KLSSSVRDVRKDRIN-KLKHI- 295
Query: 62 DNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNM 121
L R+F+IKS NH+N+ L+ K +W+T +NE L AF + V+LIFSV
Sbjct: 296 ------LREARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRAARSVVLIFSVRE 349
Query: 122 SGFFQGYAQMMSSVGWRRDNV-WSQGNGKNNPW-GRSFKVKWLRLNTLPFQKTLHLKNPL 179
SG FQG+A++ S + W G N G FK+ W+ LPF KT HL NP
Sbjct: 350 SGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLGGVFKIDWICRRELPFTKTAHLANPW 409
Query: 180 NDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGD 239
N++KPVKI RD QE+ + G LC L + +D Q H+ + KR S G
Sbjct: 410 NEHKPVKIGRDGQEIEPECGTELCMLFPHDESIDLYQV-IHK--MRHKRRMHSEPRSRGR 466
Query: 240 EEYHKPPLHVPLGKT-PMPY 258
H+ P+ +G+ P Y
Sbjct: 467 LP-HREPVPRDMGRRRPEEY 485
Score = 38 (18.4 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 331 STITEDDFLEMSYEEYL-EAH 350
S + D FL SY +Y+ E H
Sbjct: 521 SGVRRDVFLNGSYNDYMREFH 541
>UNIPROTKB|F1NS70 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:AADN02056192 EMBL:AADN02056193
IPI:IPI00591470 Ensembl:ENSGALT00000000247 Uniprot:F1NS70
Length = 1339
Score = 303 (111.7 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 78/184 (42%), Positives = 100/184 (54%)
Query: 26 SDDP-ESSSYKANEHRC-PSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNHQN 83
SD+ + SS K+ + C PS G + T + + + RYFI+KS N QN
Sbjct: 1152 SDEKSDQSSVKSTDSSCYPSPCVSPSPVSGKG---SKTPSPRLSM-PVRYFIMKSSNLQN 1207
Query: 84 IQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVW 143
+ +S +K IW+T NE L AF S V LIFSV SG FQG+A+M S +G + W
Sbjct: 1208 LDISQQKGIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARMSSEIGCEQSQCW 1267
Query: 144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALC 203
G G FKV+W+R ++PFQ T HL NP ND K V+ISRD QEL IGE L
Sbjct: 1268 GS-TGL----GGVFKVEWIRKESIPFQFTHHLLNPWNDNKEVQISRDGQELEPQIGEQLL 1322
Query: 204 HLLD 207
L D
Sbjct: 1323 KLWD 1326
>UNIPROTKB|F1RLG0 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002110 InterPro:IPR001650
InterPro:IPR007502 Pfam:PF00271 Pfam:PF04408 PROSITE:PS50088
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00700000104393
InterPro:IPR011709 Pfam:PF07717 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:CU462841
Ensembl:ENSSSCT00000015529 Uniprot:F1RLG0
Length = 1151
Score = 288 (106.4 bits), Expect = 5.1e-24, P = 5.1e-24
Identities = 74/188 (39%), Positives = 98/188 (52%)
Query: 21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
H ++DD + SS K+ + PS A + G S N RYFI+K
Sbjct: 960 HPKRSADDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1015
Query: 78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
S N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M S +G
Sbjct: 1016 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1075
Query: 138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
+ W G FKV+W+R +LPFQ HL NP ND K V+ISRD QEL
Sbjct: 1076 EKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1130
Query: 198 IGEALCHL 205
+GE L L
Sbjct: 1131 VGEQLLQL 1138
>MGI|MGI:2448561 [details] [associations]
symbol:Ythdc2 "YTH domain containing 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
MGI:MGI:2448561 GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683
Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
GeneTree:ENSGT00700000104393 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
CTD:64848 HOGENOM:HOG000155703 OMA:RAFWESS OrthoDB:EOG4JWVCN
EMBL:BC138263 EMBL:BC171951 IPI:IPI00343249 RefSeq:NP_001156485.1
UniGene:Mm.244482 ProteinModelPortal:B2RR83 SMR:B2RR83
PhosphoSite:B2RR83 PaxDb:B2RR83 PRIDE:B2RR83
Ensembl:ENSMUST00000037763 GeneID:240255 KEGG:mmu:240255
UCSC:uc008evb.2 InParanoid:B2RR83 ChiTaRS:YTHDC2 NextBio:384522
Bgee:B2RR83 Genevestigator:B2RR83 Uniprot:B2RR83
Length = 1445
Score = 288 (106.4 bits), Expect = 7.1e-24, P = 7.1e-24
Identities = 74/188 (39%), Positives = 98/188 (52%)
Query: 21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
H ++DD + SS K+ + PS A + G S N RYFI+K
Sbjct: 1254 HPKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1309
Query: 78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
S N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M S +G
Sbjct: 1310 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1369
Query: 138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
+ W G FKV+W+R +LPFQ HL NP ND K V+ISRD QEL
Sbjct: 1370 EKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1424
Query: 198 IGEALCHL 205
+GE L L
Sbjct: 1425 VGEQLLQL 1432
>UNIPROTKB|E2QZR7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 GO:GO:0008026
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 OMA:RAFWESS
EMBL:AAEX03007702 Ensembl:ENSCAFT00000000357 Uniprot:E2QZR7
Length = 1376
Score = 287 (106.1 bits), Expect = 8.4e-24, P = 8.4e-24
Identities = 74/188 (39%), Positives = 98/188 (52%)
Query: 21 HDVGNSDD-PESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
H ++DD + SS K+ + PS A + G S N RYFI+K
Sbjct: 1185 HPKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----IRYFIMK 1240
Query: 78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGW 137
S N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M S +G
Sbjct: 1241 SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGR 1300
Query: 138 RRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQD 197
+ W G FKV+W+R +LPFQ HL NP ND K V+ISRD QEL
Sbjct: 1301 EKSQDWGSAG-----LGGVFKVEWVRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 1355
Query: 198 IGEALCHL 205
+GE L L
Sbjct: 1356 VGEQLLQL 1363
>UNIPROTKB|F1MNU7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:64848 OMA:RAFWESS EMBL:DAAA02027655
IPI:IPI00689346 RefSeq:NP_001179740.1 UniGene:Bt.24975
ProteinModelPortal:F1MNU7 Ensembl:ENSBTAT00000018745 GeneID:541024
KEGG:bta:541024 NextBio:20878969 Uniprot:F1MNU7
Length = 1429
Score = 287 (106.1 bits), Expect = 8.9e-24, P = 8.9e-24
Identities = 73/190 (38%), Positives = 97/190 (51%)
Query: 16 SVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFI 75
S ++ D + +SS+Y + PS AK S N RYFI
Sbjct: 1242 STEDRSDQSSVKSTDSSNYPS-PCASPSPPSSAKGSKSPSPKPNMP---------IRYFI 1291
Query: 76 IKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV 135
+KS N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M S +
Sbjct: 1292 MKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEI 1351
Query: 136 GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELP 195
G + W G FKV+W+R +LPFQ HL NP ND K V+ISRD QEL
Sbjct: 1352 GREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELE 1406
Query: 196 QDIGEALCHL 205
+GE L L
Sbjct: 1407 PQVGEQLLQL 1416
>UNIPROTKB|Q9H6S0 [details] [associations]
symbol:YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AC093208 EMBL:AC010389 EMBL:BC137285
EMBL:AK025593 IPI:IPI00010200 RefSeq:NP_073739.3 UniGene:Hs.231942
PDB:2YU6 PDBsum:2YU6 ProteinModelPortal:Q9H6S0 SMR:Q9H6S0
IntAct:Q9H6S0 PhosphoSite:Q9H6S0 DMDM:239938805 PaxDb:Q9H6S0
PeptideAtlas:Q9H6S0 PRIDE:Q9H6S0 Ensembl:ENST00000161863
GeneID:64848 KEGG:hsa:64848 UCSC:uc003kqn.3 CTD:64848
GeneCards:GC05P112877 HGNC:HGNC:24721 HPA:HPA037364
neXtProt:NX_Q9H6S0 PharmGKB:PA134912676 HOGENOM:HOG000155703
HOVERGEN:HBG063891 InParanoid:Q9H6S0 OMA:RAFWESS OrthoDB:EOG4JWVCN
PhylomeDB:Q9H6S0 EvolutionaryTrace:Q9H6S0 GenomeRNAi:64848
NextBio:66962 ArrayExpress:Q9H6S0 Bgee:Q9H6S0 CleanEx:HS_YTHDC2
Genevestigator:Q9H6S0 GermOnline:ENSG00000047188 Uniprot:Q9H6S0
Length = 1430
Score = 285 (105.4 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 73/184 (39%), Positives = 95/184 (51%)
Query: 24 GNSDDPESSSYKANEHRC-PS-LAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLNH 81
G D + SS K+ + PS A + G S N RYFI+KS N
Sbjct: 1243 GTEDRSDQSSLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMP----VRYFIMKSSNL 1298
Query: 82 QNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDN 141
+N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M S +G +
Sbjct: 1299 RNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ 1358
Query: 142 VWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEA 201
W G FKV+W+R +LPFQ HL NP ND K V+ISRD QEL +GE
Sbjct: 1359 DWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQ 1413
Query: 202 LCHL 205
L L
Sbjct: 1414 LLQL 1417
>FB|FBgn0027616 [details] [associations]
symbol:YT521-B "YT521-B" species:7227 "Drosophila
melanogaster" [GO:0016604 "nuclear body" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] EMBL:AE014296 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 FlyBase:FBgn0027616 UniGene:Dm.7409 GeneID:38420
KEGG:dme:Dmel_CG12076 CTD:38420 GeneTree:ENSGT00690000102240
GenomeRNAi:38420 NextBio:808571 RefSeq:NP_647811.2
ProteinModelPortal:Q9VZQ1 SMR:Q9VZQ1 IntAct:Q9VZQ1
EnsemblMetazoa:FBtr0073078 UCSC:CG12076-RA InParanoid:Q9VZQ1
OMA:ADYMRNM PhylomeDB:Q9VZQ1 ArrayExpress:Q9VZQ1 Bgee:Q9VZQ1
Uniprot:Q9VZQ1
Length = 721
Score = 259 (96.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 72/218 (33%), Positives = 103/218 (47%)
Query: 1 MSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENS 60
+ SD+ ++ DS K + GN +++ P HS+ Q
Sbjct: 187 LESDSESSDS---DSGTQHKRNGGNGGG-NGRGKPSSKSSTPEKDSVGGGTHSHSQKGYD 242
Query: 61 TDNNKGKLY-NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSV 119
L+ +TR+F+IKS N N+QLS K +WAT N+ L +AF + V+LIFSV
Sbjct: 243 YMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQAFKEARNVLLIFSV 302
Query: 120 NMSGFFQGYAQMMSSVGWRRDN---VWSQGNGKN-NPWGRSFKVKWLRLNTLPFQKTLHL 175
N SG F G+A+M + RRD W + G ++ W+ L F TLHL
Sbjct: 303 NESGKFAGFARMAAPS--RRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHL 360
Query: 176 KNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVD 213
N N+ KPVKI RD QE+ IG LC L + ++
Sbjct: 361 HNTWNEGKPVKIGRDGQEIEPKIGGELCRLFPEDEQIE 398
>ASPGD|ASPL0000015049 [details] [associations]
symbol:AN10537 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
EnsemblFungi:CADANIAT00004356 HOGENOM:HOG000179786 Uniprot:C8V3R8
Length = 630
Score = 170 (64.9 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 43 SLAKEAKAG-HSNGQLENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEP 101
S KEA+ + G ++ + + RYFI+KSL ++++LS + IWATQ NE
Sbjct: 390 SSMKEAEEMVKTTGTEDDGREGSYSMRVPNRYFILKSLTVEDLELSWQSGIWATQTHNEE 449
Query: 102 ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV 135
L AF N+ V L FS N SG + GYA+MMS++
Sbjct: 450 SLNRAFENADNVYLFFSANKSGEYYGYARMMSTI 483
Score = 114 (45.2 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 154 GRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGK 209
G+ F+++WL +PF +T L+NP N + VKI+RD EL +GE L L K
Sbjct: 572 GKPFRIRWLSTERVPFHRTRGLRNPWNANREVKIARDGTELEFSVGEKLVLLFHPK 627
Score = 37 (18.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 148 GKNNPWGRSFKVKWLRLNT 166
G NPW + +VK R T
Sbjct: 592 GLRNPWNANREVKIARDGT 610
>SGD|S000002782 [details] [associations]
symbol:YDR374C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
SGD:S000002782 EMBL:BK006938 EMBL:U28373 KO:K02139
RefSeq:NP_010665.3 GeneID:851983 KEGG:sce:YDR377W
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 RefSeq:NP_010662.3
GeneID:851980 KEGG:sce:YDR374C PIR:S61169 ProteinModelPortal:Q06390
SMR:Q06390 DIP:DIP-5677N IntAct:Q06390 MINT:MINT-514883
STRING:Q06390 EnsemblFungi:YDR374C CYGD:YDR374c eggNOG:NOG276347
GeneTree:ENSGT00390000017549 HOGENOM:HOG000001065 OrthoDB:EOG4K9FMS
NextBio:970124 Genevestigator:Q06390 GermOnline:YDR374C
Uniprot:Q06390
Length = 306
Score = 209 (78.6 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 49/145 (33%), Positives = 81/145 (55%)
Query: 70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFH--NSG-KVILIFSVNMSGFFQ 126
N+R+F+IKS + ++++ S IW++ L EA+ NSG KV L FS+N SG F
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAKVFLFFSINTSGRFC 213
Query: 127 GYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPV 185
G A+M+S + D ++W +G++FKV+W+ + + + P N+ KP+
Sbjct: 214 GVAEMVSDLKMDLDTSIWED----EQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPI 269
Query: 186 KISRDCQELPQDIGEALCHLLDGKD 210
SRD QE+P IG ++ +L +D
Sbjct: 270 THSRDTQEIPYSIGISIINLFKTQD 294
>MGI|MGI:1917431 [details] [associations]
symbol:Ythdf1 "YTH domain family 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1917431 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
EMBL:AK046768 EMBL:AK172582 EMBL:BC061479 EMBL:BC065050
IPI:IPI00187444 RefSeq:NP_776122.1 UniGene:Mm.30205
ProteinModelPortal:P59326 SMR:P59326 STRING:P59326
PhosphoSite:P59326 PaxDb:P59326 PRIDE:P59326
Ensembl:ENSMUST00000037299 GeneID:228994 KEGG:mmu:228994 CTD:54915
HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
ChiTaRS:YTHDF1 NextBio:379293 Bgee:P59326 CleanEx:MM_YTHDF1
Genevestigator:P59326 GermOnline:ENSMUSG00000038848 Uniprot:P59326
Length = 559
Score = 217 (81.4 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 66/182 (36%), Positives = 92/182 (50%)
Query: 18 TEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIK 77
++ + VGN+ + S +++ P L K KA HS E D N L + R FIIK
Sbjct: 346 SDSNSVGNAQPTSAPSVESH----PVLEK-LKAAHSYNPKE--FDWN---LKSGRVFIIK 395
Query: 78 SLNHQNIQLSIEKEIWATQVMNEPILEEAFHN---SGKVILIFSVNMSGFFQGYAQMMSS 134
S + +I SI+ IW + L+ AF + G V L+FSVN SG F G A+M S
Sbjct: 396 SYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGVAEMKSP 455
Query: 135 VGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQE 193
V + VWSQ + W F VKW+ + +P + H++ ND KPV SRD QE
Sbjct: 456 VDYGTSAGVWSQ-----DKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQE 510
Query: 194 LP 195
+P
Sbjct: 511 VP 512
>CGD|CAL0002569 [details] [associations]
symbol:orf19.1939 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 51/146 (34%), Positives = 79/146 (54%)
Query: 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF------HN---SGKVILIFSVNM 121
+++F+IKS N ++ S IW + + L++A+ +N GK+ L FSVN
Sbjct: 216 SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDVDGKIFLFFSVNS 275
Query: 122 SGFFQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLN 180
SG F G A+M S++ + N+W + W F V+WL + +P + HLK P N
Sbjct: 276 SGKFCGIAEMKSAIDFTTASNIWCE----QTRWKGIFPVEWLLIKDVPNKFFQHLKIPAN 331
Query: 181 DYKPVKISRDCQELPQDIGEALCHLL 206
DYK V SRD QE+P DIG ++ ++
Sbjct: 332 DYKLVTNSRDTQEIPFDIGISMLKIV 357
>UNIPROTKB|Q5A1Q7 [details] [associations]
symbol:CaO19.1939 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 51/146 (34%), Positives = 79/146 (54%)
Query: 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF------HN---SGKVILIFSVNM 121
+++F+IKS N ++ S IW + + L++A+ +N GK+ L FSVN
Sbjct: 216 SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDVDGKIFLFFSVNS 275
Query: 122 SGFFQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLN 180
SG F G A+M S++ + N+W + W F V+WL + +P + HLK P N
Sbjct: 276 SGKFCGIAEMKSAIDFTTASNIWCE----QTRWKGIFPVEWLLIKDVPNKFFQHLKIPAN 331
Query: 181 DYKPVKISRDCQELPQDIGEALCHLL 206
DYK V SRD QE+P DIG ++ ++
Sbjct: 332 DYKLVTNSRDTQEIPFDIGISMLKIV 357
>ZFIN|ZDB-GENE-040426-2786 [details] [associations]
symbol:ythdf1 "YTH domain family, member 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-040426-2786 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
CTD:54915 HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
EMBL:BX649575 EMBL:CR759927 EMBL:BC046885 IPI:IPI00501109
RefSeq:NP_997878.1 UniGene:Dr.116333 Ensembl:ENSDART00000025171
GeneID:327606 KEGG:dre:327606 InParanoid:Q802Z0 OMA:PSMTDPY
NextBio:20810106 Uniprot:Q802Z0
Length = 614
Score = 208 (78.3 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 70/188 (37%), Positives = 89/188 (47%)
Query: 13 VDSSVTEKHD-VGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNT 71
VDSS + VGN A E P L K +A HS E D N L N
Sbjct: 377 VDSSGSSSGGGVGNGGGGGPPGSGAIESH-PVLEK-LRAAHSYNPKE--FDWN---LKNG 429
Query: 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGFFQGY 128
R FIIKS + +I SI+ IW + L+ AF + G V L+FSVN SG F G
Sbjct: 430 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRAINGKGPVYLLFSVNGSGHFCGV 489
Query: 129 AQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKI 187
A+M S V + VW+Q + W F V WL + +P + H++ ND KPV
Sbjct: 490 AEMRSPVDYGTSAGVWAQ-----DKWKGKFDVDWLFVKDVPNSQLRHIRLENNDNKPVTN 544
Query: 188 SRDCQELP 195
SRD QE+P
Sbjct: 545 SRDTQEVP 552
>UNIPROTKB|Q7Z739 [details] [associations]
symbol:YTHDF3 "YTH domain family protein 3" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
EMBL:CH471068 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 HOVERGEN:HBG060315 EMBL:AK127574 EMBL:AL832005
EMBL:BX537996 EMBL:BC052970 IPI:IPI00396131 RefSeq:NP_689971.4
UniGene:Hs.491861 ProteinModelPortal:Q7Z739 SMR:Q7Z739
IntAct:Q7Z739 STRING:Q7Z739 PhosphoSite:Q7Z739 DMDM:74738853
PaxDb:Q7Z739 PRIDE:Q7Z739 DNASU:253943 GeneID:253943
KEGG:hsa:253943 UCSC:uc003xuy.3 CTD:253943 GeneCards:GC08P064081
HGNC:HGNC:26465 neXtProt:NX_Q7Z739 PharmGKB:PA134976395
InParanoid:Q7Z739 OrthoDB:EOG4RR6H8 GenomeRNAi:253943 NextBio:92198
PMAP-CutDB:Q7Z739 CleanEx:HS_YTHDF3 Genevestigator:Q7Z739
Uniprot:Q7Z739
Length = 585
Score = 202 (76.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 52/132 (39%), Positives = 73/132 (55%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN-SGK--VILIFSVNMSGF 124
L N R FIIKS + +I SI+ IW + L+ A+ + +GK + L+FSVN SG
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F+VKW+ + +P + H++ ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527
Query: 184 PVKISRDCQELP 195
PV SRD QE+P
Sbjct: 528 PVTNSRDTQEVP 539
>MGI|MGI:1918850 [details] [associations]
symbol:Ythdf3 "YTH domain family 3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1918850 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
HOGENOM:HOG000232058 HOVERGEN:HBG060315 CTD:253943
OrthoDB:EOG4RR6H8 EMBL:AK137245 EMBL:AK039176 EMBL:AK053736
EMBL:BC057158 EMBL:BC067040 EMBL:BC067042 IPI:IPI00227149
IPI:IPI00465894 IPI:IPI00742314 RefSeq:NP_001139391.1
RefSeq:NP_766265.3 UniGene:Mm.23834 ProteinModelPortal:Q8BYK6
SMR:Q8BYK6 STRING:Q8BYK6 PhosphoSite:Q8BYK6 PaxDb:Q8BYK6
PRIDE:Q8BYK6 Ensembl:ENSMUST00000108345 Ensembl:ENSMUST00000108346
GeneID:229096 KEGG:mmu:229096 UCSC:uc008org.2 UCSC:uc008orh.2
UCSC:uc008ori.2 OMA:STGMTSI ChiTaRS:YTHDF3 NextBio:379337
Bgee:Q8BYK6 CleanEx:MM_YTHDF3 Genevestigator:Q8BYK6 Uniprot:Q8BYK6
Length = 585
Score = 202 (76.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 52/132 (39%), Positives = 73/132 (55%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN-SGK--VILIFSVNMSGF 124
L N R FIIKS + +I SI+ IW + L+ A+ + +GK + L+FSVN SG
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F+VKW+ + +P + H++ ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527
Query: 184 PVKISRDCQELP 195
PV SRD QE+P
Sbjct: 528 PVTNSRDTQEVP 539
>UNIPROTKB|Q9Y5A9 [details] [associations]
symbol:YTHDF2 "YTH domain family protein 2" species:9606
"Homo sapiens" [GO:0006959 "humoral immune response" evidence=TAS]
EMBL:CH471059 GO:GO:0006959 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AL645729 eggNOG:NOG276347 HOVERGEN:HBG060315
EMBL:AF155095 EMBL:AF192968 EMBL:AF432214 EMBL:AK292581
EMBL:AK303833 EMBL:AL356786 EMBL:BC002559 IPI:IPI00306043
IPI:IPI00397024 RefSeq:NP_001166299.1 RefSeq:NP_001166599.1
RefSeq:NP_057342.2 UniGene:Hs.532286 ProteinModelPortal:Q9Y5A9
SMR:Q9Y5A9 IntAct:Q9Y5A9 STRING:Q9Y5A9 PhosphoSite:Q9Y5A9
DMDM:41019527 PaxDb:Q9Y5A9 PRIDE:Q9Y5A9 DNASU:51441
Ensembl:ENST00000373812 Ensembl:ENST00000541996
Ensembl:ENST00000542507 GeneID:51441 KEGG:hsa:51441 UCSC:uc001brc.3
CTD:51441 GeneCards:GC01P029063 HGNC:HGNC:31675 MIM:610640
neXtProt:NX_Q9Y5A9 PharmGKB:PA134964518 InParanoid:Q9Y5A9
OMA:SVPKVVG OrthoDB:EOG4001J0 PhylomeDB:Q9Y5A9 GenomeRNAi:51441
NextBio:55027 PMAP-CutDB:Q9Y5A9 ArrayExpress:Q9Y5A9 Bgee:Q9Y5A9
CleanEx:HS_YTHDF2 Genevestigator:Q9Y5A9 GermOnline:ENSG00000198492
Uniprot:Q9Y5A9
Length = 579
Score = 193 (73.0 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 52/132 (39%), Positives = 74/132 (56%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN-SGK--VILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ A+ + +GK V L+FSVN SG
Sbjct: 407 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 466
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S+V + VWSQ K GR F V+W+ + +P + H++ N+ K
Sbjct: 467 FCGVAEMKSAVDYNTCAGVWSQDKWK----GR-FDVRWIFVKDVPNSQLRHIRLENNENK 521
Query: 184 PVKISRDCQELP 195
PV SRD QE+P
Sbjct: 522 PVTNSRDTQEVP 533
>TAIR|locus:2161213 [details] [associations]
symbol:ECT10 "evolutionarily conserved C-terminal region
10" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] EMBL:CP002688 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 IPI:IPI00522420 RefSeq:NP_974954.1 UniGene:At.28271
UniGene:At.29291 ProteinModelPortal:F4KDJ9 SMR:F4KDJ9 PRIDE:F4KDJ9
EnsemblPlants:AT5G58190.2 GeneID:835931 KEGG:ath:AT5G58190
OMA:RFCHILL PhylomeDB:F4KDJ9 Uniprot:F4KDJ9
Length = 528
Score = 192 (72.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 58/192 (30%), Positives = 91/192 (47%)
Query: 16 SVTEKHDV-GNSDDPESSSYKA-NEHR-CPSL---AKEAKAGHSNGQLENSTDNNKGKLY 69
S++ D+ GN SS K+ N + C ++ A ++ N L N +
Sbjct: 265 SISSTSDLYGNRGPRASSRVKSKNSSKPCSTIGDSASDSSTAGPNPSLYNHPEFVTD-YK 323
Query: 70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNS----GK--VILIFSVNMSG 123
N ++FI+KS + N+ SI+ +WA+ L+ A+ ++ GK + L FSVN SG
Sbjct: 324 NAKFFIVKSFSEDNVHRSIKYNVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASG 383
Query: 124 FFQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDY 182
F G ++M+ V + +D W Q W F VKW + +P + H+ ND
Sbjct: 384 QFCGVSEMVGPVDFEKDAGYWQQDR-----WSGQFPVKWHIVKDIPNNRFCHILLQNNDN 438
Query: 183 KPVKISRDCQEL 194
KPV SRD QE+
Sbjct: 439 KPVTHSRDSQEV 450
>TAIR|locus:2023807 [details] [associations]
symbol:ECT7 "AT1G48110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48286 UniGene:At.70184 IPI:IPI01019307
RefSeq:NP_001117446.1 RefSeq:NP_175245.1 ProteinModelPortal:F4HWS5
SMR:F4HWS5 PRIDE:F4HWS5 EnsemblPlants:AT1G48110.1
EnsemblPlants:AT1G48110.2 GeneID:841229 KEGG:ath:AT1G48110
OMA:NYGYYCT Uniprot:F4HWS5
Length = 639
Score = 191 (72.3 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 73/284 (25%), Positives = 126/284 (44%)
Query: 45 AKEAKAGHSNGQ---LENSTDNNKGKL---Y-NTRYFIIKSLNHQNIQLSIEKEIWATQV 97
A KAG+++ + + N + NK L Y N ++F+IKS + ++ SI+ +W++ +
Sbjct: 288 AYTTKAGNADAEGNIVINPSQYNKEDLRIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTL 347
Query: 98 MNEPILEEAFHNSGKV----------ILIFSVNMSGFFQGYAQMMSSVGWRRD-NVWSQG 146
L+ A+ ++ ++ L FSVN SG F G A+M V + +D + W Q
Sbjct: 348 HGNKKLQSAYEDAQRIATEKSCECPIFLFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQ- 406
Query: 147 NGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLL 206
+ W SF VKW + +P H+ N+ KPV SRD QE+ G + +
Sbjct: 407 ----DKWSGSFPVKWHIIKDVPNSYFRHIILQNNENKPVTNSRDTQEIMLKQGLEVLKIF 462
Query: 207 DGKDDVDGIQTSFHRDDLPAKRPCIEPSCSLGDEEYHKPPLHVPLGKTPMPYPSFLYQHQ 266
KD ++ +TS DD E + +E + P L P+P P +++
Sbjct: 463 --KDHME--RTSL-LDDFVY----YESRQRVMQDERTRLPYRTFLNDLPLPRPDLSDRNK 513
Query: 267 GGP-SNFHLAQRCGGDAENLPFTSMSSKFSRIYHSRKGNLSNLQ 309
P +F E LP S ++ + + + + S+ Q
Sbjct: 514 KTPLESFKKPSVISAKTEELPSKSEGNEETTVKEGNEEDTSSTQ 557
>TAIR|locus:2089280 [details] [associations]
symbol:ECT5 "AT3G13060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR007275
Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347 EMBL:AK228498
IPI:IPI00526241 RefSeq:NP_187912.2 UniGene:At.39501
UniGene:At.47843 ProteinModelPortal:Q0WR25 SMR:Q0WR25 PaxDb:Q0WR25
PRIDE:Q0WR25 EnsemblPlants:AT3G13060.2 GeneID:820492
KEGG:ath:AT3G13060 TAIR:At3g13060 HOGENOM:HOG000238171
InParanoid:Q0WR25 OMA:HITKSFA PhylomeDB:Q0WR25
ProtClustDB:CLSN2690899 Genevestigator:Q0WR25 Uniprot:Q0WR25
Length = 634
Score = 185 (70.2 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 68/245 (27%), Positives = 104/245 (42%)
Query: 22 DVGNSDD--PESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKL--Y-NTRYFII 76
D+ N + P +S K A ++K + E+ NN + Y N + FII
Sbjct: 344 DILNEQNRGPRASKPKTQVLEELDSAADSKKNNKGSAKEHEESNNADFVTDYTNAKLFII 403
Query: 77 KSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGK------VILIFSVNMSGFFQGYAQ 130
KS + N+ SI+ +WA+ L+ A+ + + L+FSVN S F G A+
Sbjct: 404 KSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAKDEKEPCPLFLLFSVNASSQFCGVAE 463
Query: 131 MMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISR 189
M+ V + + + W Q + W F VKW + +P + H+ ND KPV SR
Sbjct: 464 MVGPVDFEKSVDYWQQ-----DKWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSR 518
Query: 190 DCQELPQDIGEALCHLLDGKDDVDGIQTSF----HRD----DLPAKRPCIEPSCSL-GDE 240
D QE+ + G + + D I F R+ D A+R PS + E
Sbjct: 519 DTQEVKLEQGIEMLKIFKNYDADTSILDDFGFYEEREKIIQDRKARRQPSLPSAGVVAGE 578
Query: 241 EYHKP 245
HKP
Sbjct: 579 NEHKP 583
>TAIR|locus:2207405 [details] [associations]
symbol:ECT8 "AT1G79270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009805 "coumarin biosynthetic process" evidence=RCA]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=RCA] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AF326910 EMBL:AY113874 IPI:IPI00530579
RefSeq:NP_565205.1 UniGene:At.25521 UniGene:At.48393
ProteinModelPortal:Q9FPE7 SMR:Q9FPE7 IntAct:Q9FPE7 STRING:Q9FPE7
PRIDE:Q9FPE7 EnsemblPlants:AT1G79270.1 GeneID:844267
KEGG:ath:AT1G79270 TAIR:At1g79270 InParanoid:Q9FPE7 OMA:TNGECES
PhylomeDB:Q9FPE7 ProtClustDB:CLSN2917492 ArrayExpress:Q9FPE7
Genevestigator:Q9FPE7 Uniprot:Q9FPE7
Length = 528
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 60/213 (28%), Positives = 97/213 (45%)
Query: 4 DTAKENASVVDSSVTEKHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDN 63
+T K A ++ T +D+ N D ++ C S + +A+ + + +
Sbjct: 254 ETEKAKARTKENG-TSMNDLANGQDHITNG------ECESCSLDAEGNERSNGVGSVIRR 306
Query: 64 NKGKL--YNTRY-----FIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNS------ 110
++ L + T+Y F+IKS + +I SI+ +W++ + L+ A+ S
Sbjct: 307 DQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAAD 366
Query: 111 --GK--VILIFSVNMSGFFQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLN 165
GK V L FSVN SG F G A+M+ V + + W Q + W F VKW +
Sbjct: 367 KSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQQ-----DKWTGYFPVKWHIIK 421
Query: 166 TLPFQKTLHLKNPLNDYKPVKISRDCQE--LPQ 196
+P + H+ N+ KPV SRD QE LPQ
Sbjct: 422 DVPNPQLRHIILENNENKPVTNSRDTQEVRLPQ 454
>TAIR|locus:2088995 [details] [associations]
symbol:ECT6 "AT3G17330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] EMBL:CP002686
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:BT025338
IPI:IPI00522737 RefSeq:NP_188359.2 UniGene:At.38744
ProteinModelPortal:Q1JPL5 SMR:Q1JPL5 PRIDE:Q1JPL5
EnsemblPlants:AT3G17330.1 GeneID:820996 KEGG:ath:AT3G17330
TAIR:At3g17330 InParanoid:Q1JPL5 OMA:RECPIFL PhylomeDB:Q1JPL5
ProtClustDB:CLSN2682185 Genevestigator:Q1JPL5 Uniprot:Q1JPL5
Length = 595
Score = 166 (63.5 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 26 SDDPESSSYKANEHRCPSLAKEAKAGHSN--GQLENSTDN-NKGKL---YN-TRYFIIKS 78
S+ S + + ++ A KAG+++ G + + D NK Y+ R+F+IKS
Sbjct: 218 SEQNRGSRTRRSRNQLIVKAYTTKAGNADAEGNIVINPDRYNKEDFSIEYSDARFFVIKS 277
Query: 79 LNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKV----------ILIFSVNMSGFFQGY 128
+ ++ SI+ +W++ + L+ + ++ ++ L FSVN SG F G
Sbjct: 278 YSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSGLFCGV 337
Query: 129 AQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKI 187
A+M V + RD + W Q + W SF VKW + +P H+ N+ KPV
Sbjct: 338 AEMTGPVSFDRDMDFWQQ-----DKWSGSFPVKWHIIKDVPNSYFRHIILHNNENKPVTN 392
Query: 188 SRDCQEL 194
SRD QE+
Sbjct: 393 SRDTQEI 399
>TAIR|locus:2010494 [details] [associations]
symbol:ECT9 "AT1G27960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016571 "histone methylation" evidence=RCA]
EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 EMBL:BT022109 IPI:IPI00540009 RefSeq:NP_174117.2
UniGene:At.40970 ProteinModelPortal:Q500V8 SMR:Q500V8
EnsemblPlants:AT1G27960.1 GeneID:839689 KEGG:ath:AT1G27960
TAIR:At1g27960 InParanoid:Q500V8 OMA:DIFISCE PhylomeDB:Q500V8
ProtClustDB:CLSN2918485 Genevestigator:Q500V8 Uniprot:Q500V8
Length = 539
Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 44/137 (32%), Positives = 66/137 (48%)
Query: 70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGK------VILIFSVNMSG 123
+ ++F+IKS + N+ SI+ +WA+ L+ A+ + K V L+FSVN S
Sbjct: 329 DAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNASS 388
Query: 124 FFQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDY 182
F G A+M+ V + W Q W F V+WL + +P H+ ND
Sbjct: 389 QFCGVAEMVGPVDFNTSVEYWQQDR-----WSGHFPVQWLIVKDVPNSLFRHIIIESNDN 443
Query: 183 KPVKISRDCQELPQDIG 199
KPV SRD QE+ + G
Sbjct: 444 KPVTNSRDTQEVGLEKG 460
>TAIR|locus:2092815 [details] [associations]
symbol:ECT2 "evolutionarily conserved C-terminal region
2" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 EMBL:AP000603
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:AY123992
IPI:IPI00538679 RefSeq:NP_187955.2 UniGene:At.23650
UniGene:At.67751 ProteinModelPortal:Q9LJE5 SMR:Q9LJE5 STRING:Q9LJE5
PRIDE:Q9LJE5 ProMEX:Q9LJE5 EnsemblPlants:AT3G13460.1 GeneID:820548
KEGG:ath:AT3G13460 TAIR:At3g13460 InParanoid:Q9LJE5 OMA:DSRTNGR
PhylomeDB:Q9LJE5 ProtClustDB:CLSN2690909 Genevestigator:Q9LJE5
Uniprot:Q9LJE5
Length = 667
Score = 164 (62.8 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 58/191 (30%), Positives = 85/191 (44%)
Query: 20 KHDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKL---Y-NTRYFI 75
K+ GN DD S + E S E + + + NK Y N +FI
Sbjct: 391 KNQKGNLDD----SLEVKEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYANAMFFI 446
Query: 76 IKSLNHQNIQLSIEKEIWA-TQVMNEPIL---EEAFHNSG--KVILIFSVNMSGFFQGYA 129
IKS + ++ SI+ +WA T N+ + +EA +G + L FSVN SG F G A
Sbjct: 447 IKSYSEDDVHKSIKYNVWASTPNGNKKLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLA 506
Query: 130 QMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKIS 188
+M V + + W Q + W SF +KW + +P H+ N+ KPV S
Sbjct: 507 EMTGPVDFNTNVEYWQQ-----DKWTGSFPLKWHIVKDVPNSLLKHITLENNENKPVTNS 561
Query: 189 RDCQELPQDIG 199
RD QE+ + G
Sbjct: 562 RDTQEVKLEQG 572
>TAIR|locus:2095938 [details] [associations]
symbol:ECT1 "evolutionarily conserved C-terminal region
1" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019722 "calcium-mediated signaling" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] GO:GO:0005634 EMBL:CP002686 GO:GO:0019722
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
HOGENOM:HOG000238171 EMBL:AY894117 EMBL:AK317103 IPI:IPI00657449
RefSeq:NP_001030629.1 UniGene:At.27388 SMR:Q3MK94 IntAct:Q3MK94
EnsemblPlants:AT3G03950.3 GeneID:819550 KEGG:ath:AT3G03950
TAIR:At3g03950 eggNOG:NOG299038 OMA:YYEAKEN ProtClustDB:CLSN2688051
Genevestigator:Q3MK94 Uniprot:Q3MK94
Length = 428
Score = 157 (60.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 51/179 (28%), Positives = 81/179 (45%)
Query: 29 PESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLY-NTRYFIIKSLNHQNIQLS 87
P SS +K + S+ K S L+ N + + ++F+IKS + ++
Sbjct: 202 PRSSDFKNPQVLNSSMLDAMKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNC 261
Query: 88 IEKEIWATQVMNEPILEEAFH----NSGK--VILIFSVNMSGFFQGYAQMMSSVGWRRD- 140
I+ W++ L A++ NS + V L+FSVN SG F G A+M+ V + +
Sbjct: 262 IKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQFVGLAEMVGPVDFNKTM 321
Query: 141 NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIG 199
W Q + W F VKW + +P H+ N+ KPV SRD QE+ + G
Sbjct: 322 EYWQQ-----DKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHG 375
>TAIR|locus:2159391 [details] [associations]
symbol:ECT3 "AT5G61020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=RCA] EMBL:CP002688
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 IPI:IPI00547508
RefSeq:NP_851236.1 UniGene:At.21835 UniGene:At.70904 PRIDE:F4K1Z0
EnsemblPlants:AT5G61020.1 GeneID:836223 KEGG:ath:AT5G61020
OMA:HASKTCI Uniprot:F4K1Z0
Length = 495
Score = 155 (59.6 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 40/135 (29%), Positives = 68/135 (50%)
Query: 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGK------VILIFSVNMSGFF 125
++++IKS + +I SI+ +W++ L+ +++ + + V L+FSVN SG F
Sbjct: 262 KFYVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQF 321
Query: 126 QGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKP 184
G A+M+ V + + W Q + W F VKW + +P H+ N+ KP
Sbjct: 322 VGLAEMVGPVDFNKTVEYWQQ-----DKWIGCFPVKWHFVKDIPNSSLRHITLENNENKP 376
Query: 185 VKISRDCQELPQDIG 199
V SRD QE+ + G
Sbjct: 377 VTNSRDTQEVKLEQG 391
>TAIR|locus:2024286 [details] [associations]
symbol:ECT11 "AT1G09810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK221696 EMBL:AK226991 IPI:IPI00570420
RefSeq:NP_172452.3 UniGene:At.42210 ProteinModelPortal:Q56XH8
SMR:Q56XH8 PRIDE:Q56XH8 EnsemblPlants:AT1G09810.1 GeneID:837511
KEGG:ath:AT1G09810 TAIR:At1g09810 HOGENOM:HOG000137356
InParanoid:Q56XH8 OMA:WSSTING PhylomeDB:Q56XH8
ProtClustDB:CLSN2920224 Genevestigator:Q56XH8 Uniprot:Q56XH8
Length = 470
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 38/136 (27%), Positives = 68/136 (50%)
Query: 70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNS-------GK---VILIFSV 119
+ ++F+IKS + ++ SI+ +W++ + L+ AF ++ GK + L FSV
Sbjct: 230 DAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIFLFFSV 289
Query: 120 NMSGFFQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNP 178
N S F G A+M+ V + +D + W + W F V+W + +P + H+
Sbjct: 290 NASRQFVGLAEMVGYVDFNKDLDFWQV-----DKWSGFFPVEWHVVKDIPNWELRHIILD 344
Query: 179 LNDYKPVKISRDCQEL 194
N+ KPV +RD E+
Sbjct: 345 NNEDKPVTHTRDTHEI 360
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 401 388 0.00093 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 624 (66 KB)
Total size of DFA: 299 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.22u 0.09s 35.31t Elapsed: 00:00:02
Total cpu time: 35.22u 0.09s 35.31t Elapsed: 00:00:02
Start: Mon May 20 19:59:33 2013 End: Mon May 20 19:59:35 2013