Query 015740
Match_columns 401
No_of_seqs 126 out of 322
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 2.8E-53 9.7E-58 373.8 12.9 136 68-208 5-140 (141)
2 2yud_A YTH domain-containing p 100.0 2.5E-52 8.6E-57 381.0 11.5 148 68-215 23-172 (180)
3 2hd9_A UPF0310 protein PH1033; 97.3 0.0019 6.5E-08 56.6 11.3 131 72-206 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 96.4 0.0083 2.8E-07 52.6 7.6 130 71-205 4-147 (147)
5 2eve_A Hypothetical protein ps 57.9 34 0.0012 30.7 7.8 131 72-206 2-149 (157)
6 2ar1_A Hypothetical protein; s 50.2 37 0.0013 30.9 6.8 134 70-207 18-167 (172)
7 3eop_A Thymocyte nuclear prote 50.2 27 0.00094 31.9 6.0 135 72-208 2-169 (176)
8 1zce_A Hypothetical protein AT 20.0 1.2E+02 0.004 27.1 4.7 124 72-207 3-138 (155)
9 2jvf_A De novo protein M7; tet 19.5 13 0.00043 30.3 -1.5 15 183-197 8-22 (96)
10 3zzy_A Polypyrimidine tract-bi 13.4 2.1E+02 0.0071 24.2 4.5 36 99-134 41-76 (130)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.8e-53 Score=373.84 Aligned_cols=136 Identities=46% Similarity=0.734 Sum_probs=132.0
Q ss_pred CCCceEEEEEeCChhHHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCCccccCCC
Q 015740 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGN 147 (401)
Q Consensus 68 ~~~aRFFIIKS~NeeNI~~Sik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~id~~~~~iW~~~~ 147 (401)
..++|||||||++++||++|++||||+||++||++|++||+++++||||||||+||+|||||+|+|+++.....+|++
T Consensus 5 ~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~~-- 82 (141)
T 2yu6_A 5 SSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS-- 82 (141)
T ss_dssp CCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC--
T ss_pred CCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCccccc--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999977889976
Q ss_pred CCCCCCCCceEEEEEEeecCCCCccccccCCCCCCCCeeeCCCCcccChHHHHHHHHHhcC
Q 015740 148 GKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDG 208 (401)
Q Consensus 148 g~~~~wgg~FkVeWL~v~dLPF~~t~HLkNPlNeNKPVk~sRDGQEIepeiG~qLckLF~~ 208 (401)
.+|+|.|+|+||++++|||..++||+||+|+||||+++||||||++++|++||+||+.
T Consensus 83 ---~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 83 ---AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp ---SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred ---cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999999999975
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.5e-52 Score=380.97 Aligned_cols=148 Identities=41% Similarity=0.678 Sum_probs=137.4
Q ss_pred CCCceEEEEEeCChhHHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCC-CccccCC
Q 015740 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRR-DNVWSQG 146 (401)
Q Consensus 68 ~~~aRFFIIKS~NeeNI~~Sik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~id~~~-~~iW~~~ 146 (401)
+.++|||||||+|++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++... ..+|..+
T Consensus 23 ~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~ 102 (180)
T 2yud_A 23 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 102 (180)
T ss_dssp TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCC
T ss_pred cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCcccccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999998765 4678754
Q ss_pred CCC-CCCCCCceEEEEEEeecCCCCccccccCCCCCCCCeeeCCCCcccChHHHHHHHHHhcCCCCcccc
Q 015740 147 NGK-NNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGI 215 (401)
Q Consensus 147 ~g~-~~~wgg~FkVeWL~v~dLPF~~t~HLkNPlNeNKPVk~sRDGQEIepeiG~qLckLF~~~~~~~s~ 215 (401)
.+. ..+|+|.|+|+||++++|||..++||+||||+||||+++||||||++++|++||+||..+++++.+
T Consensus 103 ~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~~~ 172 (180)
T 2yud_A 103 AGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLY 172 (180)
T ss_dssp SSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSCSH
T ss_pred CccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCccHH
Confidence 322 367999999999999999999999999999999999999999999999999999999998877753
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=97.32 E-value=0.0019 Score=56.55 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=84.8
Q ss_pred eEEEEEeCChhHHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCC--------CceeEEEEeeccCCCCCCccc
Q 015740 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVW 143 (401)
Q Consensus 72 RFFIIKS~NeeNI~~Sik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~S--------G~FqGyArM~S~id~~~~~iW 143 (401)
+|.|+|| +.+++...++.|+|-. .+..+...++- +.+..+|||+-+.. ..|.|+|++++.+-...+.+|
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~m-k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t~~~ 78 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRV-KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIF 78 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTC-CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCS
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhC-CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCCccC
Confidence 5999998 9999999999999966 44444444433 34677777876655 799999999987643333333
Q ss_pred cCCCCCCCCCCCceEEEEEEeecCCCCcccc----ccCCCCCCCCeeeCCCCcccChHHHHHHHHHh
Q 015740 144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLH----LKNPLNDYKPVKISRDCQELPQDIGEALCHLL 206 (401)
Q Consensus 144 ~~~~g~~~~wgg~FkVeWL~v~dLPF~~t~H----LkNPlNeNKPVk~sRDGQEIepeiG~qLckLF 206 (401)
-++.-.....--...|+++.+..+|+..+.. |+|+-+=+.++ .-+--++|+++..+.||+.|
T Consensus 79 ~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 79 KPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 2210001222245678999999999886643 33321111222 02337999999999999865
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=96.39 E-value=0.0083 Score=52.60 Aligned_cols=130 Identities=15% Similarity=0.279 Sum_probs=82.2
Q ss_pred ceEEEEEeCChhHHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEec------CCCceeEEEEeeccCCCCCCcccc
Q 015740 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWS 144 (401)
Q Consensus 71 aRFFIIKS~NeeNI~~Sik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN------~SG~FqGyArM~S~id~~~~~iW~ 144 (401)
-+|.|+|+ +.+++...++.|+|-. .+.-+..-++-+ .+.-+|||... .-..|.|+|++++..-...+.+|.
T Consensus 4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk-~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp 80 (147)
T 2p5d_A 4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVK-VGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFK 80 (147)
T ss_dssp CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCC-TTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSC
T ss_pred ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCC-CCCEEEEEEecccCCCCCCCEEEEEEEEecccccCCcccCc
Confidence 47999995 6778999999999966 444444444333 45666666332 346899999999865333333332
Q ss_pred CCCC-CCCCCCCceEEEEEEe--ecCCCCccc----cccCCCC-CCCCeeeCCCCcccChHHHHHHHHH
Q 015740 145 QGNG-KNNPWGRSFKVKWLRL--NTLPFQKTL----HLKNPLN-DYKPVKISRDCQELPQDIGEALCHL 205 (401)
Q Consensus 145 ~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~----HLkNPlN-eNKPVk~sRDGQEIepeiG~qLckL 205 (401)
...- ...+.--..+|+++.. ..||+..++ ++++.-+ .+.-+..+ -++|+++..+.||+|
T Consensus 81 ~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 81 PTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred CccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence 2100 0123335789999988 888888776 2223212 22224666 899999999998864
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=57.92 E-value=34 Score=30.73 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=76.9
Q ss_pred eEEEEEe----CChhHHHHHhhcCeeeeccCChH--HHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC--CCCC----
Q 015740 72 RYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR---- 139 (401)
Q Consensus 72 RFFIIKS----~NeeNI~~Sik~GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~---- 139 (401)
+|.++|| ++.+++.. .....|. .-+|-+ .+.++-+.++.|++.=|-.+.....|+|++++.. |...
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~Wd-GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~ 79 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWD-GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 79 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEEC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecC-CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence 4889998 77888877 4457786 334433 4445555555555544655899999999999863 3322
Q ss_pred CccccCCCC-CCCCCCCceEEEEEEe--ecCCCCccccccCCCCCCCCeeeC-C-CCcccChHHHHHHHHHh
Q 015740 140 DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKIS-R-DCQELPQDIGEALCHLL 206 (401)
Q Consensus 140 ~~iW~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~HLkNPlNeNKPVk~s-R-DGQEIepeiG~qLckLF 206 (401)
..+|+.... ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+ | --|.|.++.-..||+|=
T Consensus 80 s~YyDpks~~~~prw-~~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~ 149 (157)
T 2eve_A 80 SHYHDAKATTEKNPW-SALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALR 149 (157)
T ss_dssp STTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHH
T ss_pred CcCcCcccCCCCCCE-EEEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHh
Confidence 245532211 12334 2455565554 445555554432 23344444442 3 34788888888888764
No 6
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=50.22 E-value=37 Score=30.89 Aligned_cols=134 Identities=16% Similarity=0.265 Sum_probs=77.7
Q ss_pred CceEEEEEe----CChhHHHHHhhcCeeeeccCChH--HHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC--CCCC--
Q 015740 70 NTRYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR-- 139 (401)
Q Consensus 70 ~aRFFIIKS----~NeeNI~~Sik~GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~-- 139 (401)
.-+|.++|| ++.+++.. .....|. .-+|-+ .+.++-+.++.|++.=|-.....+.|+|++++.. +...
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~Wd-GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fd 95 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWD-GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD 95 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceecc-CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCccccc
Confidence 456999998 67788877 3446786 334443 4445556666665555665899999999999874 3221
Q ss_pred --CccccCCCC-CCCCCCCceEEEEEEe--ecCCCCccccccCCCCCCCCeeeCC-CCcccChHHHHHHHHHhc
Q 015740 140 --DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLD 207 (401)
Q Consensus 140 --~~iW~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~HLkNPlNeNKPVk~sR-DGQEIepeiG~qLckLF~ 207 (401)
..+|+.... ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+| --|.|.++.-..||.|-.
T Consensus 96 p~s~YyDpks~~~~prw-~~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 167 (172)
T 2ar1_A 96 KTSEYFDPKATKEKNPW-KMVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMNE 167 (172)
T ss_dssp TTSTTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHHH
T ss_pred ccCcccCcccCCCCCCe-EEEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhhh
Confidence 245542211 12234 2455555543 445544444332 233333334433 346788888888888763
No 7
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=50.15 E-value=27 Score=31.91 Aligned_cols=135 Identities=14% Similarity=0.243 Sum_probs=82.7
Q ss_pred eEEEEEe-------------CChhHHHHHh-hcCeeeeccCC--hHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC
Q 015740 72 RYFIIKS-------------LNHQNIQLSI-EKEIWATQVMN--EPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV 135 (401)
Q Consensus 72 RFFIIKS-------------~NeeNI~~Si-k~GIWaTt~~N--ekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i 135 (401)
+|.++|| ++.+++..+- +...|.=- +| -+.+.++-+.++.|++.-|..+.....|+|+++...
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGV-RNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~ 80 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGV-RNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA 80 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCC-CCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCc-ccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeecc
Confidence 4777886 5677776653 34567632 33 333445655555665555766888999999999873
Q ss_pred --CCC----CCccccCCC-CCCCCCCCceEEEEEEe--ecCCCCcccccc-------CCCCCCCCeeeCC-CCcccChHH
Q 015740 136 --GWR----RDNVWSQGN-GKNNPWGRSFKVKWLRL--NTLPFQKTLHLK-------NPLNDYKPVKISR-DCQELPQDI 198 (401)
Q Consensus 136 --d~~----~~~iW~~~~-g~~~~wgg~FkVeWL~v--~dLPF~~t~HLk-------NPlNeNKPVk~sR-DGQEIepei 198 (401)
|.. ...+++... ....+|. .+.|+-++. ..|+...++... -++.+..-|+.+| --|.|.++.
T Consensus 81 ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~e 159 (176)
T 3eop_A 81 YPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEE 159 (176)
T ss_dssp EECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHH
T ss_pred ccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHH
Confidence 332 134553221 1124553 477777765 346666666553 2555555566666 457889999
Q ss_pred HHHHHHHhcC
Q 015740 199 GEALCHLLDG 208 (401)
Q Consensus 199 G~qLckLF~~ 208 (401)
-..||+|-+-
T Consensus 160 w~~I~~l~~~ 169 (176)
T 3eop_A 160 FDFVLSLEEL 169 (176)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 8
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=19.96 E-value=1.2e+02 Score=27.12 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=72.9
Q ss_pred eEEEEEe----CChhHHHHHhhc-CeeeeccCChH--HHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC--CCCCCcc
Q 015740 72 RYFIIKS----LNHQNIQLSIEK-EIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRRDNV 142 (401)
Q Consensus 72 RFFIIKS----~NeeNI~~Sik~-GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~~~i 142 (401)
+|.++|| ++.+++...-.. ..|. .-+|-+ .+.++-+.++.|++.=| |+...+.|+|++++.. |....+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~Wd-GVRNyqArN~mr~Mk~GD~~fFYHS-~~~~gIvGi~eVv~e~ypD~t~~d- 79 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWT-GVRNYQARNNMRAMKIGDKGFFYHS-NEGLDVVGIVEVCALSHPDSTAEG- 79 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECC-CCCCHHHHHHHHTCCTTCEEEEEET-TTTCEEEEEEEEEEEEEECTTSTT-
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceec-CcccHHHHHHHHhccCCCEEEEEEe-CCCCceEEEEEEeeeccCCCCcCC-
Confidence 5899998 677887775442 4586 334443 33344444555544445 5999999999999875 322211
Q ss_pred ccCCCCCCCCCCCceEEEEEEe--ecCCCCccccccCCCCCCCCeeeCC-CCcccChHHHHHHHHHhc
Q 015740 143 WSQGNGKNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLD 207 (401)
Q Consensus 143 W~~~~g~~~~wgg~FkVeWL~v--~dLPF~~t~HLkNPlNeNKPVk~sR-DGQEIepeiG~qLckLF~ 207 (401)
..+| ..+.|+-+.. ..|+...++.. -.+.+..-|+.+| --|.|.++.-..||.|-.
T Consensus 80 -------~Prw-~~VdV~~v~~~~~pvtL~eLK~~-~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 138 (155)
T 1zce_A 80 -------DLKW-DCVDIRAVCDMPQPVSLKDVKAN-PKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG 138 (155)
T ss_dssp -------CSSC-EEEEEEEEEEEEEEEEHHHHHHC-GGGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred -------CCCe-EEEEEEEccccCCcccHHHHhcC-CCcccCeeeeccCCCceeeCHHHHHHHHHhhC
Confidence 1133 3566776644 44555555432 1233333344444 247788899999998874
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=19.53 E-value=13 Score=30.26 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=11.6
Q ss_pred CCeeeCCCCcccChH
Q 015740 183 KPVKISRDCQELPQD 197 (401)
Q Consensus 183 KPVk~sRDGQEIepe 197 (401)
--|++.||||||+-+
T Consensus 8 itikiqrdgqeieid 22 (96)
T 2jvf_A 8 ITIKIQRDGQEIEID 22 (96)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEeeCCeEEEEE
Confidence 357889999998753
No 10
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=13.44 E-value=2.1e+02 Score=24.16 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=28.2
Q ss_pred ChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeecc
Q 015740 99 NEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSS 134 (401)
Q Consensus 99 NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~ 134 (401)
.+..|.+.|...+.|.=+.-+.+++.||||-+|.+.
T Consensus 41 te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 76 (130)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCH
T ss_pred CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCH
Confidence 556799999988877555545677899999999865
Done!