Query 015743
Match_columns 401
No_of_seqs 296 out of 614
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 8.9E-31 3E-35 226.6 15.0 113 125-239 7-120 (130)
2 4i1k_A B3 domain-containing tr 99.8 1.4E-18 4.7E-23 153.5 13.2 99 127-236 44-142 (146)
3 1yel_A AT1G16640; CESG, protei 99.7 3.3E-16 1.1E-20 129.6 10.4 83 128-220 7-89 (104)
4 1gcc_A Ethylene responsive ele 98.9 1.3E-10 4.3E-15 89.9 0.6 24 55-78 25-48 (63)
5 1na6_A Ecorii, restriction end 95.0 0.069 2.4E-06 54.3 8.7 91 129-220 18-123 (404)
6 2k75_A Uncharacterized protein 58.9 16 0.00054 29.8 5.5 32 169-220 40-71 (106)
7 2k50_A Replication factor A re 42.6 72 0.0025 25.5 6.9 40 168-221 44-83 (115)
8 1oa8_A Ataxin-1; RNA binding, 42.6 5.6 0.00019 34.9 0.2 29 190-218 87-125 (133)
9 3e0e_A Replication protein A; 39.2 73 0.0025 25.3 6.4 35 169-220 40-74 (97)
10 3m7a_A Uncharacterized protein 32.9 51 0.0018 28.6 4.8 79 128-217 49-140 (140)
11 3o27_A Putative uncharacterize 29.5 46 0.0016 26.1 3.5 40 192-235 23-62 (68)
12 1o7i_A SSB, SSO2364, single st 29.5 81 0.0028 25.7 5.3 37 167-220 38-74 (119)
13 1mvf_D MAZE protein, PEMI-like 29.4 59 0.002 24.9 4.1 39 186-232 7-45 (82)
14 2cbp_A Cucumber basic protein; 28.0 25 0.00087 28.4 1.8 18 203-220 18-35 (96)
15 3dm3_A Replication factor A; p 27.2 1.7E+02 0.006 23.6 6.8 35 169-220 43-77 (105)
16 2kbn_A Conserved protein; nucl 26.4 90 0.0031 25.3 5.0 36 168-219 36-71 (109)
17 1x9u_A Umecyanin; cupredoxin, 25.4 25 0.00085 29.5 1.4 19 202-220 23-41 (116)
18 3qve_A HMG box-containing prot 23.9 14 0.00049 32.6 -0.4 26 191-216 97-132 (139)
19 1f56_A Plantacyanin; cupredoxi 20.6 41 0.0014 26.9 1.7 19 202-220 12-30 (91)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.97 E-value=8.9e-31 Score=226.56 Aligned_cols=113 Identities=67% Similarity=1.117 Sum_probs=101.8
Q ss_pred cccccccEEEecccCCCCCCCcEEeehhhhhhhCCCCC-CCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhh
Q 015743 125 SIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDS-SSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRF 203 (401)
Q Consensus 125 ~~~~e~lF~KvLT~SDVgkl~RLvIPK~~Aek~FPl~~-~~~~~g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~F 203 (401)
...++++|+|+||+|||++++||+||+++|++|||... .+..+++.|.++|.+|++|+|+|+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 46677899999999999999999999999999999543 22457899999999999999999999989999999999999
Q ss_pred hhccCCCCCCEEEEEecccCCCCceEEEEEEeCCCC
Q 015743 204 VKDKKLDAGDTVSFQRGVGELGKDRLYIDWRRRPDV 239 (401)
Q Consensus 204 VkeK~LkaGDvVvF~R~~~e~~~~~l~IgvRRr~~~ 239 (401)
|++|+|++||+|+|++.. +++.+|+|+|||+...
T Consensus 87 V~~~~L~~GD~~~F~~~~--~~~~~l~I~~rr~~~~ 120 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSN--GQDQQLYIGWKSRSGS 120 (130)
T ss_dssp HHHTTCCTTCEEEEEECC--SSSCCEEEEEECCCSC
T ss_pred HHHcCCCCCCEEEEEEec--CCCcEEEEEEEECCCC
Confidence 999999999999999984 4568999999999876
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.78 E-value=1.4e-18 Score=153.47 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=84.2
Q ss_pred cccccEEEecccCCCCCCCcEEeehhhhhhhCCCCCCCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhc
Q 015743 127 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKD 206 (401)
Q Consensus 127 ~~e~lF~KvLT~SDVgkl~RLvIPK~~Aek~FPl~~~~~~~g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVke 206 (401)
...+.|.|+||+|||.+.++|.||++++++|||.. ...+.++|. |+.|.++|+|+++ +++|++||..||++
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~------~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI------SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC------CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC------CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34589999999999998889999999999999854 357788887 6999999999874 79999999999999
Q ss_pred cCCCCCCEEEEEecccCCCCceEEEEEEeC
Q 015743 207 KKLDAGDTVSFQRGVGELGKDRLYIDWRRR 236 (401)
Q Consensus 207 K~LkaGDvVvF~R~~~e~~~~~l~IgvRRr 236 (401)
|+|++||+|+|.... ..+..|.|.|-|.
T Consensus 115 n~L~~GD~cvFeli~--~~~~~f~V~IfR~ 142 (146)
T 4i1k_A 115 NNLGEGDVCVFELLR--TRDFVLKVTAFRV 142 (146)
T ss_dssp TTCCTTCEEEEEECS--SSSCEEEEEEECC
T ss_pred cCCCCCCEEEEEEec--CCceEEEEEEEec
Confidence 999999999999984 2334577766654
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.66 E-value=3.3e-16 Score=129.62 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=72.3
Q ss_pred ccccEEEecccCCCCCCCcEEeehhhhhhhCCCCCCCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhcc
Q 015743 128 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDK 207 (401)
Q Consensus 128 ~e~lF~KvLT~SDVgkl~RLvIPK~~Aek~FPl~~~~~~~g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK 207 (401)
..+.|.|+|+++|. ..+|.||+++++.|.+.. ...+.++|..|++|+++|++++ .+++|++||.+||++|
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccC------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 34789999999993 459999999998765532 3578899999999999999874 5789999999999999
Q ss_pred CCCCCCEEEEEec
Q 015743 208 KLDAGDTVSFQRG 220 (401)
Q Consensus 208 ~LkaGDvVvF~R~ 220 (401)
+|++||+|+|...
T Consensus 77 ~L~~GD~lvF~~~ 89 (104)
T 1yel_A 77 NLEDGKYLQFIYD 89 (104)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 9999999999987
No 4
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=98.93 E-value=1.3e-10 Score=89.90 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.8
Q ss_pred CcccccCCCCCHHHHHhcCchhhh
Q 015743 55 HQNSWLLGPIDSQEAATNFDNRED 78 (401)
Q Consensus 55 ~~r~WLGtf~t~eeAA~ayD~~~~ 78 (401)
+.|+|||||+|+||||+|||.++.
T Consensus 25 g~r~~LGtf~T~eeAA~AyD~Aa~ 48 (63)
T 1gcc_A 25 GARVWLGTFETAEDAALAYDRAAF 48 (63)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEEeeeCCCHHHHHHHHHHHHH
Confidence 579999999999999999998654
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.97 E-value=0.069 Score=54.34 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=65.5
Q ss_pred cccEEEecccCCCC----CCCcEEeehhhhhhhCCCCC--CCCCCCeEEEEE--eCCCCeEEEEEEEeC------CCcce
Q 015743 129 EHMFDKVVTPSDVG----KLNRLVIPKQHAEKYFPLDS--SSNEKGLLLNFE--DRNGKAWRFRYSYWN------SSQSY 194 (401)
Q Consensus 129 e~lF~KvLT~SDVg----kl~RLvIPK~~Aek~FPl~~--~~~~~g~~L~v~--D~~GK~W~FR~sywn------ss~sY 194 (401)
...|.|.|++.|++ +...+.||+..+..+||-.. .+.+....+.++ |...-.+.++++|++ ....|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 36899999999999 34489999987888997332 233445555544 444455599999997 34679
Q ss_pred EEccChh-hhhhccCCCCCCEEEEEec
Q 015743 195 VMTKGWS-RFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 195 VLTkGWs-~FVkeK~LkaGDvVvF~R~ 220 (401)
.||. |. .+.--+...+||.++|.+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 9986 55 3444577889999999876
No 6
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=58.92 E-value=16 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEec
Q 015743 169 LLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 169 ~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~ 220 (401)
..+.+.|.+| ..+++.|+.. |++||+|.+...
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng 71 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNA 71 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEee
Confidence 4788899999 5888998654 999999999843
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=42.63 E-value=72 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.1
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEecc
Q 015743 168 GLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRGV 221 (401)
Q Consensus 168 g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~~ 221 (401)
-..+.+.|.+| ..++.+|+... | ....|++||+|.|.-..
T Consensus 44 ~~~~~l~D~TG---~I~~t~w~~~~-------~----~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 44 LANVIIADDTG---ELRAVFWTENI-------K----LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp EEEEEEEETTE---EEEEEEETTGG-------G----GGGTCCTTSEEEEEEEE
T ss_pred EEEEEEEeCCC---eEEEEEeCchh-------h----hhhcCCCCCEEEEEeeE
Confidence 46788999999 78899997531 2 12579999999997654
No 8
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=42.62 E-value=5.6 Score=34.88 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCcceEEccChhhh----------hhccCCCCCCEEEEE
Q 015743 190 SSQSYVMTKGWSRF----------VKDKKLDAGDTVSFQ 218 (401)
Q Consensus 190 ss~sYVLTkGWs~F----------VkeK~LkaGDvVvF~ 218 (401)
.-+-||..+||+.| ...+.|.+||+|+-.
T Consensus 87 ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClsl 125 (133)
T 1oa8_A 87 EYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL 125 (133)
T ss_dssp TCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEE
T ss_pred CCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEec
Confidence 34778999999876 467889999999753
No 9
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=39.21 E-value=73 Score=25.27 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEec
Q 015743 169 LLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 169 ~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~ 220 (401)
..+.+.|.+| ..++..|+ +.+.. .|++||+|.| ..
T Consensus 40 ~~~~l~DeTG---~I~~tlW~------------~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLWN------------ELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEEEEEG------------GGGGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEEC------------Ccccc-ccCCCCEEEE-EE
Confidence 4677889888 56666654 44433 8999999999 54
No 10
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=32.87 E-value=51 Score=28.64 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=44.7
Q ss_pred ccccEEEecccCCCCCCCcEE--eehhhhhhhCCCCCCCCCCCeEEEEEeCCCCeEEEEEEE--e-------CCCcceEE
Q 015743 128 KEHMFDKVVTPSDVGKLNRLV--IPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKAWRFRYSY--W-------NSSQSYVM 196 (401)
Q Consensus 128 ~e~lF~KvLT~SDVgkl~RLv--IPK~~Aek~FPl~~~~~~~g~~L~v~D~~GK~W~FR~sy--w-------nss~sYVL 196 (401)
+-.+|.+.|.+. ..|. .|...... |-... -.--+.|.|.|.+|++-...-.- | ...-+|||
T Consensus 49 ~GLM~R~~l~~~-----~GMLFvf~~~~~~~-fwMkn--t~~PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VL 120 (140)
T 3m7a_A 49 KGLMFRTELGDE-----EGMIFLRNPPDMAT-FWMRN--TVIPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVL 120 (140)
T ss_dssp HTTTTCCCCCTT-----EEEEEECSSCCEEE-ECCTT--CCSCEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEE
T ss_pred hccCCCCCCCCC-----ceEEEecCCCceEE-EEeec--cCcceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEE
Confidence 336777777653 1344 34332222 32211 12247778888888766654211 1 11246888
Q ss_pred --ccChhhhhhccCCCCCCEEEE
Q 015743 197 --TKGWSRFVKDKKLDAGDTVSF 217 (401)
Q Consensus 197 --TkGWs~FVkeK~LkaGDvVvF 217 (401)
..|| +.++++++||.|.|
T Consensus 121 El~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 121 EINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEETTH---HHHHTCCTTCEEEC
T ss_pred EeCcCh---HHHcCCCCCCEEeC
Confidence 4666 57899999999975
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=29.54 E-value=46 Score=26.15 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=29.8
Q ss_pred cceEEccChhhhhhccCCCCCCEEEEEecccCCCCceEEEEEEe
Q 015743 192 QSYVMTKGWSRFVKDKKLDAGDTVSFQRGVGELGKDRLYIDWRR 235 (401)
Q Consensus 192 ~sYVLTkGWs~FVkeK~LkaGDvVvF~R~~~e~~~~~l~IgvRR 235 (401)
..|.|+= =.++++.-+|+.||.+...-+. .++.+.+.++|
T Consensus 23 etyYInI-PaeI~kaLgIk~gD~fel~ve~---kdgeIvLcykR 62 (68)
T 3o27_A 23 TTFYLLI-PKDIAEALDIKPDDTFILNMEQ---KDGDIVLSYKR 62 (68)
T ss_dssp CCEEEEE-CHHHHHHTTCCTTCCEEEEEEE---ETTEEEEEEEE
T ss_pred eEEEEeC-cHHHHHHhCCCCCCEEEEEEec---CCCeEEEEehh
Confidence 3455532 3589999999999999988762 24678888887
No 12
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=29.48 E-value=81 Score=25.71 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEec
Q 015743 167 KGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 167 ~g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~ 220 (401)
.-..+.+.|.+|. .++..|+.. . ..|++||+|.+...
T Consensus 38 ~~~~~~l~D~TG~---I~~tlW~~~------------~--~~~~~G~vv~i~~g 74 (119)
T 1o7i_A 38 TISEAIVGDETGR---VKLTLWGKH------------A--GSIKEGQVVKIENA 74 (119)
T ss_dssp EEEEEEEEETTEE---EEEEEEGGG------------T--TCCCTTCEEEEEEE
T ss_pred EEEEEEEEeCCCE---EEEEEECCh------------h--hcCCCCCEEEEEeE
Confidence 3468889999994 778888532 1 24899999999843
No 13
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=29.36 E-value=59 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=28.5
Q ss_pred EEeCCCcceEEccChhhhhhccCCCCCCEEEEEecccCCCCceEEEE
Q 015743 186 SYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRGVGELGKDRLYID 232 (401)
Q Consensus 186 sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~~~e~~~~~l~Ig 232 (401)
..|+++..-.|-+ .+++..+|++||.|.|... ++.+.|.
T Consensus 7 ~k~Gns~~v~iPk---~~~~~lgl~~gd~v~i~~~-----~~~iii~ 45 (82)
T 1mvf_D 7 KRWGNSPAVRIPA---TLMQALNLNIDDEVKIDLV-----DGKLIIE 45 (82)
T ss_dssp EEETTEEEEECCH---HHHHHTTCCTTCBEEEEEE-----TTEEEEE
T ss_pred EEECCccEEEECH---HHHHHcCCCCCCEEEEEEE-----CCEEEEE
Confidence 4455555566666 7899999999999999886 2456663
No 14
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=27.95 E-value=25 Score=28.35 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.9
Q ss_pred hhhccCCCCCCEEEEEec
Q 015743 203 FVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 203 FVkeK~LkaGDvVvF~R~ 220 (401)
....+..++||+|+|.-.
T Consensus 18 Wa~~~~f~vGD~L~F~y~ 35 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYN 35 (96)
T ss_dssp TTTTCCBCTTCEEEEECC
T ss_pred hccCceEcCCCEEEEEec
Confidence 477899999999999876
No 15
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=27.24 E-value=1.7e+02 Score=23.60 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEec
Q 015743 169 LLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 169 ~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R~ 220 (401)
..+.+.|.+| ..++..|+ +.+.. .|++||+|.| ..
T Consensus 43 ~~~~l~D~TG---~IrvtlW~------------~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 43 KSFIVRDETG---SIRVTLWD------------NLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEETTE---EEEEEEEG------------GGGGS-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEEC------------ccccc-ccCCCCEEEE-EE
Confidence 3677888888 47777664 22222 8999999999 54
No 16
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=26.40 E-value=90 Score=25.31 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=27.1
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEccChhhhhhccCCCCCCEEEEEe
Q 015743 168 GLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQR 219 (401)
Q Consensus 168 g~~L~v~D~~GK~W~FR~sywnss~sYVLTkGWs~FVkeK~LkaGDvVvF~R 219 (401)
.+.+.+.|.+| +.++..|+.. ....|++||+|.+.-
T Consensus 36 ~~~~~l~DeTG---~I~~t~W~~~-------------~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 36 SQVGLLGDETG---IIKFTIWKNA-------------ELPLLEQGESYLLRS 71 (109)
T ss_dssp EEEEEEECTTC---CEEEEEEGGG-------------CCCCCCTTCEEEEEE
T ss_pred EEEEEEECCCC---eEEEEEECcc-------------cccccCCCCEEEEEE
Confidence 45688899999 4788888632 235899999999873
No 17
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=25.44 E-value=25 Score=29.49 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.5
Q ss_pred hhhhccCCCCCCEEEEEec
Q 015743 202 RFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 202 ~FVkeK~LkaGDvVvF~R~ 220 (401)
.....+..++||+|+|.-.
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~ 41 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFA 41 (116)
T ss_dssp HHHTTCCEETTCEEEECCC
T ss_pred hccccccCcCCCEEEEEec
Confidence 4578899999999999776
No 18
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1, HBP1, AXH domain, struc genomics consortium, transcription; 2.04A {Homo sapiens} PDB: 1v06_A
Probab=23.94 E-value=14 Score=32.60 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred CcceEEccChhhh----------hhccCCCCCCEEE
Q 015743 191 SQSYVMTKGWSRF----------VKDKKLDAGDTVS 216 (401)
Q Consensus 191 s~sYVLTkGWs~F----------VkeK~LkaGDvVv 216 (401)
.+-||..+||+.| ...++|.+||+|+
T Consensus 97 hPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDvCl 132 (139)
T 3qve_A 97 HPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCL 132 (139)
T ss_dssp CEEEETTTEEEESSHHHHHHHHCCCCEECCTTCEEC
T ss_pred CceEEecccceeECcccchhhcCCcceecccCCEec
Confidence 3668889999766 4678899999984
No 19
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=20.61 E-value=41 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.8
Q ss_pred hhhhccCCCCCCEEEEEec
Q 015743 202 RFVKDKKLDAGDTVSFQRG 220 (401)
Q Consensus 202 ~FVkeK~LkaGDvVvF~R~ 220 (401)
.....+..++||+|+|.-.
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~ 30 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYI 30 (91)
T ss_dssp BSCTTCCBCTTCEEEEECC
T ss_pred cCcCCccEeCCCEEEEEcc
Confidence 5688899999999999876
Done!