Query 015744
Match_columns 401
No_of_seqs 210 out of 415
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 9.5E-29 3.3E-33 192.9 6.7 61 42-103 1-61 (64)
2 2yus_A SWI/SNF-related matrix- 88.9 1.3 4.3E-05 35.1 7.0 48 46-99 16-63 (79)
3 2yum_A ZZZ3 protein, zinc fing 86.8 1.2 4E-05 34.1 5.5 55 45-102 5-62 (75)
4 2cu7_A KIAA1915 protein; nucle 84.7 2.1 7.2E-05 32.6 6.0 52 45-102 6-57 (72)
5 1x41_A Transcriptional adaptor 80.5 1.8 6E-05 32.0 4.0 50 45-100 5-55 (60)
6 2hzd_A Transcriptional enhance 78.1 2.9 0.0001 34.0 4.9 56 46-103 4-76 (82)
7 2iw5_B Protein corest, REST co 76.3 3.5 0.00012 39.3 5.5 55 43-103 128-182 (235)
8 2xag_B REST corepressor 1; ami 74.9 3.9 0.00013 42.4 5.9 53 46-104 378-430 (482)
9 2cqq_A RSGI RUH-037, DNAJ homo 71.9 4.6 0.00016 31.5 4.4 48 49-102 9-59 (72)
10 2cqr_A RSGI RUH-043, DNAJ homo 67.8 23 0.0008 27.6 7.6 50 48-100 18-68 (73)
11 2elk_A SPCC24B10.08C protein; 63.0 8.1 0.00028 28.3 4.0 48 48-100 9-57 (58)
12 2ba2_A D12_ORF131, hypothetica 61.1 26 0.00087 28.8 6.8 41 148-191 34-74 (85)
13 3sjm_A Telomeric repeat-bindin 60.7 20 0.0007 26.9 5.9 51 42-95 5-55 (64)
14 1ity_A TRF1; helix-turn-helix, 58.9 21 0.00072 26.7 5.7 54 43-99 5-58 (69)
15 3uun_A Dystrophin; triple heli 56.2 32 0.0011 26.5 6.5 56 162-217 38-93 (119)
16 2d9a_A B-MYB, MYB-related prot 51.5 14 0.00048 26.8 3.5 50 44-98 4-53 (60)
17 1wgx_A KIAA1903 protein; MYB D 51.4 24 0.00081 27.9 5.0 49 50-101 10-59 (73)
18 3uul_A Utrophin; spectrin repe 50.6 38 0.0013 26.1 6.2 56 163-218 39-94 (118)
19 2li6_A SWI/SNF chromatin-remod 49.2 3.1 0.0001 34.6 -0.4 46 53-101 49-98 (116)
20 2kes_A Synphilin-1; synphillin 48.4 15 0.0005 27.2 3.1 24 157-180 15-42 (48)
21 4eef_G F-HB80.4, designed hema 47.0 8.3 0.00028 31.0 1.8 46 49-97 21-67 (74)
22 2lm1_A Lysine-specific demethy 45.0 7.1 0.00024 31.6 1.2 48 53-101 44-97 (107)
23 2yqk_A Arginine-glutamic acid 44.7 21 0.00072 26.7 3.7 47 44-95 5-51 (63)
24 1guu_A C-MYB, MYB proto-oncoge 44.6 48 0.0016 23.2 5.4 46 48-98 3-48 (52)
25 2da3_A Alpha-fetoprotein enhan 42.4 47 0.0016 24.9 5.4 61 40-103 13-73 (80)
26 2eqy_A RBP2 like, jumonji, at 41.3 9.9 0.00034 31.9 1.5 47 54-101 43-95 (122)
27 1c20_A DEAD ringer protein; DN 40.2 9.4 0.00032 32.1 1.2 47 54-101 53-106 (128)
28 2jrz_A Histone demethylase jar 39.5 9.4 0.00032 31.8 1.1 47 54-101 41-93 (117)
29 2cxy_A BAF250B subunit, HBAF25 39.4 9.4 0.00032 32.1 1.1 47 54-101 52-104 (125)
30 2eqr_A N-COR1, N-COR, nuclear 37.8 38 0.0013 25.0 4.1 45 44-94 8-52 (61)
31 2jxj_A Histone demethylase jar 36.6 9.5 0.00032 30.3 0.7 46 54-100 37-88 (96)
32 2cjj_A Radialis; plant develop 35.6 52 0.0018 26.7 4.9 48 50-102 10-60 (93)
33 3ok8_A Brain-specific angiogen 34.8 1.1E+02 0.0039 28.6 7.7 65 147-214 72-145 (222)
34 1ig6_A MRF-2, modulator recogn 33.7 8.6 0.00029 31.3 -0.1 48 53-101 33-87 (107)
35 1gvd_A MYB proto-oncogene prot 33.4 99 0.0034 21.5 5.6 46 48-98 3-48 (52)
36 2dim_A Cell division cycle 5-l 33.4 1.1E+02 0.0039 22.6 6.2 49 45-98 6-54 (70)
37 2kk0_A AT-rich interactive dom 32.2 17 0.00058 31.4 1.6 47 54-101 65-118 (145)
38 2dmt_A Homeobox protein BARH-l 31.5 1.6E+02 0.0054 22.2 6.9 67 35-104 8-74 (80)
39 1w0t_A Telomeric repeat bindin 31.2 1E+02 0.0035 21.7 5.3 48 48-98 2-49 (53)
40 2rq5_A Protein jumonji; develo 28.6 20 0.00069 30.4 1.4 48 54-102 43-97 (121)
41 2crg_A Metastasis associated p 27.1 58 0.002 24.8 3.7 47 44-95 4-50 (70)
42 1kkx_A Transcription regulator 26.9 22 0.00074 30.1 1.3 46 54-102 49-98 (123)
43 2jeo_A Uridine-cytidine kinase 26.5 19 0.00065 31.8 0.9 37 1-37 1-39 (245)
44 4fla_A Regulation of nuclear P 22.4 2.3E+02 0.0077 24.9 7.0 69 147-215 76-144 (152)
45 1wh5_A ZF-HD homeobox family p 21.9 2.6E+02 0.0088 21.4 6.5 61 42-102 15-76 (80)
46 1gxe_A Myosin binding protein 20.6 45 0.0015 27.5 2.0 12 42-53 43-54 (139)
47 3kdq_A Uncharacterized conserv 20.0 95 0.0033 27.4 4.1 28 145-179 3-30 (154)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=9.5e-29 Score=192.95 Aligned_cols=61 Identities=41% Similarity=0.810 Sum_probs=58.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhcc
Q 015744 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (401)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~ 103 (401)
++.+||||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..+
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 79999999999999999999999999999999864
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.92 E-value=1.3 Score=35.10 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=39.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015744 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (401)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (401)
..+-.||++=+.+|++||...|+- =+.|-+.| ++=|..+++.|.++|-
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTSC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHhc
Confidence 346789999999999999999932 35666666 4789999999999873
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.84 E-value=1.2 Score=34.05 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCch---HHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
...+=.||+|=+++|++||..+| .+...|. .|-+.| +|=|..+|+.|.++|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 34455899999999999999998 3322233 355554 6899999999999997654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.73 E-value=2.1 Score=32.58 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=41.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
...+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345668999999999999999992 33456565 47899999999999986554
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=80.54 E-value=1.8 Score=32.00 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCCCccCCHHHHHHHHHHHHHhC-CCCCCCchHHhhhcCCCCccHHHHHHhhhhhhh
Q 015744 45 AKPRLKWTPDLHERFIEAVNQLG-GADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 (401)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 100 (401)
.-.|-.||+|=.+++++||..+| +- =+.|-+.| +|=|-.+++.|.++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 32 24566666 67899999999988854
No 6
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=78.14 E-value=2.9 Score=34.04 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=36.9
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhh---hc-C-----------C--CCccHHHHHHhhhhhhhhcc
Q 015744 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMK---LM-G-----------I--PGLTLYHLKSHLQKYRLSKN 103 (401)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-----------v--~gLT~~hVkSHLQKYRl~k~ 103 (401)
+..=.|.++|-..|++|+...- +. -+-|-+|. .| | . +-=|+.+|.||||.-+..+.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 4456899999999999999875 11 12222231 11 1 1 23478899999998876653
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=76.33 E-value=3.5 Score=39.31 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=44.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhcc
Q 015744 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (401)
Q Consensus 43 ~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~ 103 (401)
+..+..-+||+|=++.|++|+...|- .=..|-++ |++=|..+|++|..+||...+
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 34456779999999999999999982 24456666 578999999999999986644
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.85 E-value=3.9 Score=42.40 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=43.3
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015744 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (401)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 104 (401)
+..-+||++=|..|++||.+.|- .=+.|-+.++- =|..+|++|.++||....+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 45689999999999999999982 34567777664 4999999999999886554
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=71.93 E-value=4.6 Score=31.49 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCchH---HhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 49 LKWTPDLHERFIEAVNQLGGADKATPKT---VMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 49 lrWT~eLH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
-.||.|=+.+|+.|+..+++ -||.+ |-..| |=|...|+.|.+++.-.+
T Consensus 9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 36999999999999999973 36775 55555 679999999988875543
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=67.79 E-value=23 Score=27.58 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=39.0
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhc-CCCCccHHHHHHhhhhhhh
Q 015744 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLM-GIPGLTLYHLKSHLQKYRL 100 (401)
Q Consensus 48 RlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYRl 100 (401)
+-.||++=...|+.||..+|. -+|.+--++- -|||=|-.+|+.|.+.+.-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346999999999999999982 3777644332 2579999999999987753
No 11
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=62.97 E-value=8.1 Score=28.31 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHHhC-CCCCCCchHHhhhcCCCCccHHHHHHhhhhhhh
Q 015744 48 RLKWTPDLHERFIEAVNQLG-GADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 (401)
Q Consensus 48 RlrWT~eLH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 100 (401)
+-.||++=..++++||...| +- =+.|-+.|+. |=|-.+++.|.++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999998 32 2345555531 6788999998887743
No 12
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=61.08 E-value=26 Score=28.85 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHHHHHHH
Q 015744 148 ISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQ 191 (401)
Q Consensus 148 ItEALq~QmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsiLEKAq 191 (401)
|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677766654333333444 8899999999999999997544
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=60.68 E-value=20 Score=26.92 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015744 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (401)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 95 (401)
++..+.|-.||+|=-++.+++|.+.|. . .=+.|.+.+++.|=|-.+++-..
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHH
Confidence 344556778999999999999999982 1 23467787777788888887544
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=58.90 E-value=21 Score=26.68 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015744 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (401)
Q Consensus 43 ~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (401)
..+++|-.||+|=-+..+++|..+|. ..=+.|.+.|+..|=|-.+++-+...|-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 35678889999999999999999981 1235677777655788888887776664
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.16 E-value=32 Score=26.46 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhHhHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHhh
Q 015744 162 LHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 217 (401)
Q Consensus 162 LHEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gleaak~qLseL~s~ 217 (401)
+..||+-.+.|+--|+++..-+.+|.+.|++.+.....++.....-+..+.+|...
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSR 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34555666778888899999999999999988775444333333345555555543
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=51.47 E-value=14 Score=26.80 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015744 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (401)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (401)
+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.+..+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999981 1123455554 678888888887766
No 17
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=51.41 E-value=24 Score=27.90 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchHHhhhc-CCCCccHHHHHHhhhhhhhh
Q 015744 50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLM-GIPGLTLYHLKSHLQKYRLS 101 (401)
Q Consensus 50 rWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYRl~ 101 (401)
.||.+=..+|..|+..++ +.+|-+--++- -|+|=|.+.|+.|.+.....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 599999999999999975 45888765443 37899999999888766433
No 18
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.55 E-value=38 Score=26.13 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHhHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHhhh
Q 015744 163 HEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKV 218 (401)
Q Consensus 163 HEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gleaak~qLseL~s~v 218 (401)
.+||+-.+.|+--|+++..-+.+|.+.|++.+.....++.....-+..|.+|...-
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw 94 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARW 94 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Confidence 34555667778888999999999999999887654333333334456666665543
No 19
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.17 E-value=3.1 Score=34.65 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCccHHHHHHhhhhhhhh
Q 015744 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLTLYHLKSHLQKYRLS 101 (401)
Q Consensus 53 ~eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (401)
-+|+..|.. |..+||.++.+.+ .|.+.||++. -..|++|..||=+.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 98 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHH
Confidence 378888875 7889999887654 5889999987 67899998888654
No 20
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=48.43 E-value=15 Score=27.15 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.5
Q ss_pred HHHHHHHHH----HHHHHHHhHhHHHHh
Q 015744 157 EVQRRLHEQ----LEVQRHLQLRIEAQG 180 (401)
Q Consensus 157 EVQRRLHEQ----LEVQRhLQLRIEAQG 180 (401)
.+-|.|+|| +-+|.+||.-+|+|.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566788888 457999998888873
No 21
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=46.97 E-value=8.3 Score=30.95 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=36.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcC-CCCccHHHHHHhhhh
Q 015744 49 LKWTPDLHERFIEAVNQLGGADKATPKTVMKLMG-IPGLTLYHLKSHLQK 97 (401)
Q Consensus 49 lrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQK 97 (401)
-.||.+=.+.|..|+...+ +-||.+--++-. |||=|...|+.|.|-
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3599999999999998864 567887655443 689999999999763
No 22
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.99 E-value=7.1 Score=31.64 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015744 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (401)
Q Consensus 53 ~eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (401)
-+|+..|.. |..+||.++.+-+ .|.+.||+|.-| ...++.|..||=+.
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 379998876 6789999877654 578899997533 35688888887543
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.73 E-value=21 Score=26.70 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015744 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (401)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 95 (401)
+...+-.||++=|+.|.+|+...| -+ =..|-+.| |+.-|...|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHHH
Confidence 344567899999999999999998 22 22333311 5667777776444
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=44.63 E-value=48 Score=23.16 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=35.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015744 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (401)
Q Consensus 48 RlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (401)
|-.||+|=..+++++|.+.|. ..=+.|-+.| +|=|-.+++.|..+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 1234565654 678888888887766
No 25
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=42.41 E-value=47 Score=24.88 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=40.3
Q ss_pred ccCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhcc
Q 015744 40 VLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (401)
Q Consensus 40 v~s~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~ 103 (401)
.....+++|.++|++- ...++++.... ...++..+.++...-|||..+|+.=.|.-|...+
T Consensus 13 ~~~~~rr~Rt~ft~~Q-l~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQ-LEILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp CCCCCTTCCSSCCTTT-HHHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHH-HHHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHh
Confidence 3445667888888863 33445554443 3455556666666668999999999888876644
No 26
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.34 E-value=9.9 Score=31.92 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (401)
+|++.|.. |..+||.++.+-+ .|.+.|+++.-+ ...++.|..||=+.
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 78888876 7889999877654 588899997533 35788888888554
No 27
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.17 E-value=9.4 Score=32.12 Aligned_cols=47 Identities=28% Similarity=0.392 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCc-c--HHHHHHhhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (401)
+|+..|.. |..+||.++.+-+ .|.+.||++.- | ...++.|..||=+.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 79998876 7789999876653 58889998752 2 46789988888554
No 28
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=39.53 E-value=9.4 Score=31.79 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (401)
+|+..|.. |..+||.++.+-+ .|.+.||++.-| ...|+.|..||=+.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888876 7889999877654 588899997433 45688888887554
No 29
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.44 E-value=9.4 Score=32.08 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (401)
+|+..|.. |..+||.++.+-+ .|.+.|+++.-| ...|+.|..||=+.
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888876 7799999876643 588899998643 35678888887554
No 30
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.83 E-value=38 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHh
Q 015744 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94 (401)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 94 (401)
.++..-.||++=|+.|++|+.+.|- -=..|-.. ||+=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 4567789999999999999999971 12345444 567888887755
No 31
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.58 E-value=9.5 Score=30.31 Aligned_cols=46 Identities=26% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRL 100 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl 100 (401)
+|+..|.. |..+||.++.+-+ .|.+.|+++.-+ ...++.|..||=+
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 67887875 7889999876653 578899986532 3567888877743
No 32
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=35.60 E-value=52 Score=26.72 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchH---HhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 50 KWTPDLHERFIEAVNQLGGADKATPKT---VMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 50 rWT~eLH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
.||+|=...|+.|+..+| . -+|.+ |-+. |||=|-.+|+.|.+.+.-.+
T Consensus 10 ~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD-K--DTPDRWANVARA--VEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHH--STTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999997 2 25654 4444 47999999999999875443
No 33
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=34.84 E-value=1.1e+02 Score=28.63 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH---------HHHHHhHhHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHH
Q 015744 147 HISETIQMQIEVQRRLHEQLE---------VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSEL 214 (401)
Q Consensus 147 qItEALq~QmEVQRRLHEQLE---------VQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gleaak~qLseL 214 (401)
.|.+||.-=-|+||+|..+|| +-.+|+.+||.-.||++..+.+=+.. +......++.+.++|--+
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e---~k~~~~~leK~~~elkK~ 145 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIE---YRHRAANLEKCMSELWRM 145 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHh
Confidence 477887555589999999987 45689999999999998655432222 122233455555555444
No 34
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.69 E-value=8.6 Score=31.30 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCC-cc--HHHHHHhhhhhhhh
Q 015744 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPG-LT--LYHLKSHLQKYRLS 101 (401)
Q Consensus 53 ~eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~g-LT--~~hVkSHLQKYRl~ 101 (401)
-+|+..|.. |..+||.++.+-+ .|.+.||++. .| -..|++|..||=+.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 478888875 7899999877653 5788999864 22 35688888888554
No 35
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=33.41 E-value=99 Score=21.53 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=34.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015744 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (401)
Q Consensus 48 RlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (401)
+-.||+|=.++++++|.+.|- ..=..|-+.| +|=|-.+++.|...|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999982 0123455554 678888888887766
No 36
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.39 E-value=1.1e+02 Score=22.59 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=37.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015744 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (401)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (401)
...|=.||+|=.++++++|...|- ..=+.|-+.|+ |=|-.+++-+...|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 345668999999999999999981 12356666664 78888898887776
No 37
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.19 E-value=17 Score=31.43 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCc-c--HHHHHHhhhhhhhh
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (401)
+|+..|.. |..+||.++.+-+ .|.+.|+++.- | ...|+.|..||=+.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 78888876 7899999877653 58889998752 2 46788888888554
No 38
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.53 E-value=1.6e+02 Score=22.22 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=43.1
Q ss_pred CCCCCccCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015744 35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (401)
Q Consensus 35 ~d~~~v~s~~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 104 (401)
++.+......+++|..+|++--. .++.+.+.- ...++..+.++...-|||..+|+-=.|.-|..-+.
T Consensus 8 ~~~~~~~~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 8 GEPGTKAKKGRRSRTVFTELQLM-GLEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCSCCCCCCCCCSCCCCCHHHHH-HHHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 33444455667788889986433 334444432 34556666666666789999999988887766443
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=31.24 E-value=1e+02 Score=21.69 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=35.1
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015744 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (401)
Q Consensus 48 RlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (401)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+...|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 123467777765467777777665544
No 40
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=28.58 E-value=20 Score=30.39 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc---HHHHHHhhhhhhhhc
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT---LYHLKSHLQKYRLSK 102 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT---~~hVkSHLQKYRl~k 102 (401)
+|+..|. +|..+||.++.+-+ .|...|++|... ...++.|..||=+.-
T Consensus 43 DL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 43 DLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp CHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 7887774 67899999988765 478899997543 467899988886653
No 41
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=27.06 E-value=58 Score=24.84 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015744 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (401)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 95 (401)
.++..-.||++=++.|.+|+...| -+ =..|-+. -|++-|...|..+.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 446677899999999999999998 22 2333331 16778888877665
No 42
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.92 E-value=22 Score=30.11 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 54 eLH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
+|+..|.. |..+||.++.+.+ .|.+.|++|. -..|+.|..||=+.-
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPY 98 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHHH
Confidence 78887765 7899999988764 4889999988 778999988887663
No 43
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=26.46 E-value=19 Score=31.82 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=9.5
Q ss_pred CCcccccCCCccCCCCCCCCCCccc--ccccCCCCCCCC
Q 015744 1 MYHHHQNQGKSMHSSSRMPIPTERH--LFLQGGSGPGDS 37 (401)
Q Consensus 1 my~~~~~q~~~~~~~sr~~~~~~r~--~~~~~g~~~~d~ 37 (401)
|.|||+|.......-.-.++...+. ..+.|++|+|-+
T Consensus 1 ~~~~~~~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKS 39 (245)
T 2jeo_A 1 MHHHHHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKS 39 (245)
T ss_dssp ----------------------CCSEEEEEECSTTSSHH
T ss_pred CCccccccCCCceeecceeccCCCCEEEEEECCCCCCHH
Confidence 5666666444433333344444443 446788887764
No 44
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.38 E-value=2.3e+02 Score=24.87 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHH
Q 015744 147 HISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELV 215 (401)
Q Consensus 147 qItEALq~QmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gleaak~qLseL~ 215 (401)
.|.||..+=-|-..||-.+++=.+.|.--+++=..|.+..|.+|.+.|-.+..-..-+.+.|.+|....
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888999999999999999999999999999999999999888665433333444455444443
No 45
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.91 E-value=2.6e+02 Score=21.41 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhC-CCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015744 42 STDAKPRLKWTPDLHERFIEAVNQLG-GADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (401)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (401)
...+++|-..|++--.....+...+| -....++....++...-||+...|+-=.|.-|...
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 34567888888874333333333333 02345555666666677999999999888776543
No 46
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=20.60 E-value=45 Score=27.50 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.2
Q ss_pred CCCCCCCccCCH
Q 015744 42 STDAKPRLKWTP 53 (401)
Q Consensus 42 s~~~KpRlrWT~ 53 (401)
+..+.|.+.|..
T Consensus 43 ~G~P~P~i~W~k 54 (139)
T 1gxe_A 43 SGDPAPTVIWQK 54 (139)
T ss_dssp CSBSCCEEEEEE
T ss_pred EEcCCCeEEEEE
Confidence 456789999965
No 47
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=20.05 E-value=95 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 015744 145 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQ 179 (401)
Q Consensus 145 ~~qItEALq~QmEVQRRLHEQLEVQRhLQLRIEAQ 179 (401)
+|.++|||.+.-.+|||+ .+|+-||..-
T Consensus 3 ~MKLAEAL~lRadl~kri-------~qL~~ri~~n 30 (154)
T 3kdq_A 3 AMYLAEALAQRVEAQRRY-------SELNQLLLDV 30 (154)
T ss_dssp CCBHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHH-------HHHHHHHHhc
Confidence 578999999999999999 4566666543
Done!