BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015746
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 122/319 (38%), Gaps = 43/319 (13%)
Query: 84 SGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFNEI-VSAGGKTVWGDPA 142
+GG IG +L +L+ G+EV ++ +N ++ N E+ V WG
Sbjct: 6 TGGAGFIGSHLVDKLVELGYEVVVV----DNLSSGRREFVNPSAELHVRDLKDYSWG--- 58
Query: 143 EVGNVVGGVTF------DVVLDNN------GKNLDAVRPVADWAKSSGVKQFLFISSAGI 190
+ G V F +V L +N+ A V +WA+ +GV+ +F SS+ +
Sbjct: 59 --AGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 191 YKPADEPPHVEGDVVKP--------DAGHVQVEKYISENFSNWASFRPQYMIGSGNNKDC 242
Y AD P E + KP AG V Y + R ++G
Sbjct: 117 YGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGV 176
Query: 243 EEWFFDRIVRKRPVP----IPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNI--FNLV 296
+D I++ R P + G G Q + +VRD A + E + N+
Sbjct: 177 ---IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVG 233
Query: 297 SDRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGW 356
+ AV + +A++ A+ GL EI G + +P + + GW
Sbjct: 234 NVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDG----RGWPGDVKYMTLAVTKLMKLTGW 289
Query: 357 RSTTNLPEDLKERFEEYVK 375
R T E +K+ E+ K
Sbjct: 290 RPTMTSAEAVKKTAEDLAK 308
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 119/318 (37%), Gaps = 45/318 (14%)
Query: 84 SGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFNEIVSAGGKTVWGDPAE 143
+GG IG +L +L+ G+EV ++ + ++ + + WG
Sbjct: 6 TGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYS-------WG---- 54
Query: 144 VGNVVGGVTF------DVVLDNN------GKNLDAVRPVADWAKSSGVKQFLFISSAGIY 191
+ G V F +V L +N+ A V +WA+ +GV+ +F SS+ +Y
Sbjct: 55 -AGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVY 113
Query: 192 KPADEPPHVEGDVVKP--------DAGHVQVEKYISENFSNWASFRPQYMIGSGNNKDCE 243
AD P E + KP AG V Y + R ++G
Sbjct: 114 GDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGV- 172
Query: 244 EWFFDRIVRKRPVP----IPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNI--FNLVS 297
+D I++ R P + G G Q + +VRD A + E + N+ +
Sbjct: 173 --IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGN 230
Query: 298 DRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWR 357
AV + +A++ A+ GL EI G + +P + + GWR
Sbjct: 231 VDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDG----RGWPGDVKYMTLAVTKLMKLTGWR 286
Query: 358 STTNLPEDLKERFEEYVK 375
T E +K+ E+ K
Sbjct: 287 PTMTSAEAVKKTAEDLAK 304
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 163 NLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEP---PHVEGDVVKPDAGHVQVEKYIS 219
N++ R + D A ++GV++F+F SS +Y P + P P E + P++ + + K +
Sbjct: 102 NVEGTRRLLDAASAAGVRRFVFASSGEVY-PENRPEFLPVTEDHPLCPNSPY-GLTKLLG 159
Query: 220 E---NFSNWASFRPQYMIGSGNNKDCEEW-----------FFDR---------------- 249
E F + ++ + +D E FF R
Sbjct: 160 EELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAE 219
Query: 250 IVRKRPVPIPG-------SGMQF-TNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAV 301
+++ R + P +G F +I RD+ + + LA+++PEAA FNL +D
Sbjct: 220 LLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGT-FNLGADEPA 278
Query: 302 TLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTN 361
+ A GLP+ V FP ++++ ++ LG+ +
Sbjct: 279 DFAALLPKIAALTGLPIVTVD-------------FPGDGVYYHTSNERIRNTLGFEAEWT 325
Query: 362 LPEDLKE 368
+ L+E
Sbjct: 326 MDRMLEE 332
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 29/279 (10%)
Query: 74 KKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIM-------TVGDENSDKMKKPPFNRF 126
K ++LI +GG IG +LA+ L+ SG EVT++ + E + K + P
Sbjct: 7 KHRILI----TGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLEL 62
Query: 127 NEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGKNLDAVRPVADWAKSSGVKQFLFIS 186
E + + V+ + +F LD N+D+ R + S GV + + S
Sbjct: 63 EERDLSDVRLVY---HLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118
Query: 187 SAGIYKPADEPPHVEGDVVKPDAGHV--QVEKYISENFSNWASFRPQYMI-------GSG 237
+ +Y AD P E + P + + +V + AS P+ I G G
Sbjct: 119 TCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPG 178
Query: 238 NNKDCE-EWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLV 296
D ++ + +P+ G G Q + ++ D+ L P ++ N
Sbjct: 179 ERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRP---LPSVVNFG 235
Query: 297 SDRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKA 335
S ++++++ + ++ QA E+ P+ I +A
Sbjct: 236 SGQSLSVNDVIRIL-QATSPAAEVARKQPRPNEITEFRA 273
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 157 LDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEK 216
+ N N+ + AK++ V+ F + +S+ Y P VE ++ P + + V K
Sbjct: 134 ITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYA-VTK 192
Query: 217 YISENFSN-------WASFRPQYMIGSGNNKD--------CEEWFFDRIVRKRPVPIPGS 261
Y++E ++ + + +Y G +D +W +++ V I G
Sbjct: 193 YVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWT-AAMLKGDDVYINGD 251
Query: 262 GMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIV 321
G + ++ ++ M L+ ++A NI+N+ TL+ ++ L I
Sbjct: 252 GETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL---IH 308
Query: 322 HYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTNLPEDLKERFEEYVK 375
H D + ++ R H A+ A D+L +R + E L+ YV+
Sbjct: 309 HIDKLSIKYREFRSGDVR--HSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 360
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 157 LDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEK 216
+ N N+ + AK++ V+ F + +S+ Y P VE ++ P + + V K
Sbjct: 121 ITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYA-VTK 179
Query: 217 YISENFSN-------WASFRPQYMIGSGNNKD--------CEEWFFDRIVRKRPVPIPGS 261
Y++E ++ + + +Y G +D +W +++ V I G
Sbjct: 180 YVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWT-AAMLKGDDVYINGD 238
Query: 262 GMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIV 321
G + ++ ++ M L+ ++A NI+N+ TL+ ++ L I
Sbjct: 239 GETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL---IH 295
Query: 322 HYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTNLPEDLKERFEEYVK 375
H D + ++ R H A+ A D+L +R + E L+ YV+
Sbjct: 296 HIDKLSIKYREFRSGDVR--HSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 157 LDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEK 216
+ N N+ + AK++ V+ F + +S+ Y P VE ++ P + + V K
Sbjct: 115 ITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYA-VTK 173
Query: 217 YISENFSN-------WASFRPQYMIGSGNNKD--------CEEWFFDRIVRKRPVPIPGS 261
Y++E ++ + + +Y G +D +W +++ V I G
Sbjct: 174 YVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWT-AAMLKGDDVYINGD 232
Query: 262 GMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIV 321
G + ++ ++ M L+ ++A NI+N+ TL+ ++ L I
Sbjct: 233 GETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL---IH 289
Query: 322 HYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTNLPEDLKERFEEYVK 375
H D + ++ R H A+ A D+L +R + E L+ YV+
Sbjct: 290 HIDKLSIKYREFRSGDVR--HSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 341
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 22/234 (9%)
Query: 157 LDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEK 216
+ N N+ + AK++ V+ F + +S+ Y P VE ++ P + + V K
Sbjct: 121 ITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYA-VTK 179
Query: 217 YISENFSN-------WASFRPQYMIGSGNNKD--------CEEWFFDRIVRKRPVPIPGS 261
Y++E ++ + + +Y G +D +W +++ V I G
Sbjct: 180 YVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWT-AAMLKGDDVYINGD 238
Query: 262 GMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIV 321
G + ++ ++ M L+ ++A NI+N+ TL+ ++ L I
Sbjct: 239 GETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL---IH 295
Query: 322 HYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTNLPEDLKERFEEYVK 375
H D + ++ R A+ A D+L +R + E L+ YV+
Sbjct: 296 HIDKLSIKYREFRSGDVRASQ--ADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 245 WFFDRIVR-----KRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNL 295
WF + V +P I G+G Q ++ H D+ S+ A+ N N FN+
Sbjct: 211 WFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNI 266
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 4 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 37
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 7 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 40
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGD 112
V+I+ +GG Y KE LGSGHEVT+++ D
Sbjct: 4 VVILGAGTGGMPAA--YEMKEALGSGHEVTLISAND 37
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 73 EKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIM 108
++K++LI +GG +G +L +L+ GHEVT++
Sbjct: 4 DRKRILI----TGGAGFVGSHLTDKLMMDGHEVTVV 35
>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog
Length = 270
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 196 EPPHVEGDVVKPDAGHVQVEKYISENFSNWASFRPQYMIGSGNNKDCEEW 245
+P H E V + +V + Y S+W ++ PQ +IG D E W
Sbjct: 123 QPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAESW 172
>pdb|2HVQ|A Chain A, Structure Of Adenylated Full-length T4 Rna Ligase 2
Length = 335
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 153 FDVVLDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKP---ADEPPHVEGDVVKPDA 209
++++L N ++ AV+ + + + + F + GI K D+ +V +V ++
Sbjct: 69 YEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVFDIIVTTES 128
Query: 210 GHVQ-VEKYISENFSNWASFRPQYMIGSG 237
G V V+ Y+ E+F N F+ ++G G
Sbjct: 129 GDVTYVDDYMMESFCNTFKFKMAPLLGRG 157
>pdb|1S68|A Chain A, Structure And Mechanism Of Rna Ligase
Length = 249
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 153 FDVVLDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKP---ADEPPHVEGDVVKPDA 209
++++L N ++ AV+ + + + + F + GI K D+ +V +V ++
Sbjct: 68 YEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYCDKDFYVFDIIVTTES 127
Query: 210 GHVQ-VEKYISENFSNWASFRPQYMIGSG 237
G V V+ Y+ E+F N F+ ++G G
Sbjct: 128 GDVTYVDDYMMESFCNTFKFKMAPLLGRG 156
>pdb|2HVR|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVR|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVS|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
pdb|2HVS|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
Length = 335
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 153 FDVVLDNNGKNLDAVRPVADWAKSSGVKQFLFISSAGIYKP---ADEPPHVEGDVVKPDA 209
++++L N ++ AV+ + + + + F + GI K D+ +V +V ++
Sbjct: 69 YEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVFDIIVTTES 128
Query: 210 GHVQ-VEKYISENFSNWASFRPQYMIGSG 237
G V V+ Y+ E+F N F+ ++G G
Sbjct: 129 GDVTYVDDYMMESFCNTFKFKMAPLLGRG 157
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 73 EKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIM 108
++K++LI +GG +G +L +L GHEVT++
Sbjct: 26 DRKRILI----TGGAGFVGSHLTDKLXXDGHEVTVV 57
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 54 PASSRRSSVSAFTVKASAAEKKKVLIVNTNS-GGHAVIGFYLAKELLGSGHEVTIMTVG 111
P S +S++ + K K+ I S GG V+G L K+L GHE+ +T G
Sbjct: 15 PRGSHMASMTGGQQMGRGSMKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSG 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,085,142
Number of Sequences: 62578
Number of extensions: 498313
Number of successful extensions: 1284
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 36
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)