BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015748
         (401 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 123/325 (37%), Gaps = 56/325 (17%)

Query: 76  PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKG 135
           PLD AK RLQ Q      +GL RTA+                              +Y+G
Sbjct: 21  PLDTAKVRLQIQGES---QGLVRTAA----------------------------SAQYRG 49

Query: 136 TLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPY 195
            L     +VR EG   L+ G  A L   +    + +  YD     ++ F T  +      
Sbjct: 50  VLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDS----VKQFYTKGSEHAGIG 105

Query: 196 VPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQ 255
             L+AGS   +LA     P ++ + R QA      G +            + +++  +  
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQ----------STVEAYKTIA 155

Query: 256 KLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSIL--SLVGDDARVTSILGANFTGG 313
           + +  R LW G    +AR+   +     T + I+ ++L  +L+ DD      L  +FT  
Sbjct: 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD------LPCHFTSA 209

Query: 314 FVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVA 373
           F AG        P+DV +TR+    +       +     + + R  G +  + G  P   
Sbjct: 210 FGAGFCTTVIASPVDVVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFL 266

Query: 374 RAGPSVGIVVSFYEVVKYALYQRHQ 398
           R G    ++   YE +K AL   +Q
Sbjct: 267 RLGSWNVVMFVTYEQLKRALMAAYQ 291



 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 33/210 (15%)

Query: 196 VPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPP------GVWKTLVGVVNPLK 249
           V  +    A  +A +  +P++ A+ R+Q   E+Q  V+        GV  T++ +V    
Sbjct: 3   VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMV---- 58

Query: 250 SRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGAN 309
                 + +  R L+ G+ A L R + F+++     + +++      G +    + +G+ 
Sbjct: 59  ------RTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQ--FYTKGSE---HAGIGSR 107

Query: 310 FTGGFVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLME----IWRDGGMKGLF 365
              G   G++A A   P DV + R Q +    RA      Q+ +E    I R+ G++GL+
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQ---ARAGGGRRYQSTVEAYKTIAREEGIRGLW 164

Query: 366 TGVGPRVARAGPSVGIVVSFYEVVKYALYQ 395
            G  P VAR       +V+  E+V Y L +
Sbjct: 165 KGTSPNVAR-----NAIVNCAELVTYDLIK 189


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 22/266 (8%)

Query: 131 NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP 190
            +YKG +D   ++ +++GF   WRG  A++    PT  +     D ++ +       +  
Sbjct: 48  KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107

Query: 191 MLTPYV-PLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLK 249
               +   L +G  A + +    YP++ ARTR+ A       V      +   G+ N + 
Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA------DVGKGAAQREFTGLGNCIT 161

Query: 250 SRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGAN 309
               S  L   R L+ G    +   + + A  +   +  +     ++ D   V  I+   
Sbjct: 162 KIFKSDGL---RGLYQGFNVSVQGIIIYRAAYFGVYDTAK----GMLPDPKNVHIIVSWM 214

Query: 310 FTGGFVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWR----DGGMKGLF 365
                 A  +A   + P D  R R  ++     A  M T    ++ WR    D G K  F
Sbjct: 215 IAQTVTA--VAGLVSYPFDTVRRRMMMQSGRKGADIMYT--GTVDCWRKIAKDEGPKAFF 270

Query: 366 TGVGPRVARAGPSVGIVVSFYEVVKY 391
            G    V R      ++V + E+ K+
Sbjct: 271 KGAWSNVLRGMGGAFVLVLYDEIKKF 296


>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
 pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
 pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
           Rubidium
          Length = 1034

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 174 YDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 217
           +D  +  +    T N P LTPY+  +  SV   L CI+   IEL
Sbjct: 779 FDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIEL 822


>pdb|3Q08|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q08|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 6.5
 pdb|3Q09|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
 pdb|3Q09|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
           At Ph 9.0
          Length = 248

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 210 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 248
           I+ Y +  A+T M+ F  T  G K   V++TLVGV  PL
Sbjct: 79  INAYDLAKAQTFMREFRSTTVG-KNADVFETLVGVTKPL 116


>pdb|2VXH|A Chain A, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
 pdb|2VXH|B Chain B, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
 pdb|2VXH|C Chain C, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
 pdb|2VXH|D Chain D, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
 pdb|2VXH|E Chain E, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
 pdb|2VXH|F Chain F, The Crystal Structure Of Chlorite Dismutase: A Detox
           Enzyme Producing Molecular Oxygen
          Length = 251

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 210 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 248
           I+ Y +  A+T M+ F  T  G K   V++TLVGV  PL
Sbjct: 82  INAYDLAKAQTFMREFRSTTIG-KNADVFETLVGVTKPL 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,443,100
Number of Sequences: 62578
Number of extensions: 391638
Number of successful extensions: 724
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 11
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)