Query 015748
Match_columns 401
No_of_seqs 201 out of 2102
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 8.4E-56 2.9E-60 419.0 13.1 288 58-397 3-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.2E-55 1.1E-59 414.0 15.4 290 53-393 4-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5.2E-35 1.8E-39 275.6 10.8 194 193-396 6-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.6E-34 1.2E-38 270.6 10.2 189 53-295 101-289 (303)
5 3tgu_G UQCRQ, mitochondrial ub 18.5 27 0.00092 24.9 0.2 38 360-397 33-70 (81)
6 2bnk_A Early protein GP16.7; D 14.7 99 0.0034 20.2 2.1 45 323-368 21-65 (67)
7 3vjj_A P9-1; 3.00A {Rice black 12.8 98 0.0034 27.4 2.3 46 318-374 273-318 (368)
8 4b19_A PEPA1; toxin, toxin apo 12.4 73 0.0025 17.9 0.9 22 308-329 5-26 (30)
9 1pp9_G Ubiquinol-cytochrome C 12.0 42 0.0014 23.9 -0.3 38 360-397 33-70 (81)
10 2acm_A Mucin-1; auto-catalytic 11.8 39 0.0013 22.3 -0.5 20 346-365 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.4e-56 Score=419.04 Aligned_cols=288 Identities=24% Similarity=0.320 Sum_probs=250.3
Q ss_pred HHHHHHhhhhHHHHhhcChHHHHHHHHhhccCCCCCCccccccccccccccccccCCCCcccCCCCCCCCCccccCCChH
Q 015748 58 ERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTL 137 (401)
Q Consensus 58 ~~~~ag~~ag~~~~~~~~Pld~vk~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (401)
..+++|++||+++.+++||||++|+|+|++....... . ......|++++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~------------~-------------------~~~~~~~~~~~ 51 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV------------R-------------------TAASAQYRGVL 51 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH------------H-------------------HCSCSSCSCHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc------------c-------------------cccCCCCCCHH
Confidence 3689999999999999999999999999986321000 0 00123689999
Q ss_pred HHHHHHHHhhccchhccchhhhhhccccccceecchHHHHHHHHhhhcCCCCCCCCchhhhhHHHHHHHHHHHhhchHHH
Q 015748 138 DLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 217 (401)
Q Consensus 138 ~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pldv 217 (401)
+++++|+++||+++||||+.+++++.++..+++|.+||.+|+.+....+ ..+....+++|++||+++.++++|+|+
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~ 127 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDV 127 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9999999999999999999999999999999999999999998865321 245778999999999999999999999
Q ss_pred HHHHhhcccccCCCCCCCchhhHHhhhhccccccccccccccchhcccchHHhhhhhcccchhhhhchHHHHHHHhhhhC
Q 015748 218 ARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVG 297 (401)
Q Consensus 218 iktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~ll~~~~~~~~~f~~ye~lk~~~~~~~~ 297 (401)
||+|+|++.......+|+++++++++|+++| |++|||||+.+++++.+|+.+++|.+||.+|+.+.+...
T Consensus 128 vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~ 197 (303)
T 2lck_A 128 VKVRFQAQARAGGGRRYQSTVEAYKTIAREE----------GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197 (303)
T ss_dssp HHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred HHHHHhcccccCCCCCCCCHHHHHHHHHHhc----------ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999875433347899999999999999 999999999999999999999999999999998775332
Q ss_pred CCccccccchhhhhhhHHHhhhHhhhccchhhhhhhhhccCCCCccCCCCHHHHHHHHHHhcCccccccchhHHHhhhcc
Q 015748 298 DDARVTSILGANFTGGFVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVARAGP 377 (401)
Q Consensus 298 ~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvr~rlq~~~~~~~~~y~~~~~~~~~i~~~eG~~g~yrG~~~~l~r~~p 377 (401)
. .......+++|++||++++++++|+||||+|||++.. ..|.++++|+++|+++||++|||||+.|+++|.+|
T Consensus 198 ~----~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p 270 (303)
T 2lck_A 198 M----TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGS 270 (303)
T ss_dssp C----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHH
T ss_pred C----CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHh
Confidence 1 1233458999999999999999999999999999864 24889999999999999999999999999999999
Q ss_pred cceeeHHhHHHHHHHHHhhh
Q 015748 378 SVGIVVSFYEVVKYALYQRH 397 (401)
Q Consensus 378 ~~~i~~~~ye~~~~~l~~~~ 397 (401)
.++++|.+||.+++.+.+..
T Consensus 271 ~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 271 WNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998876544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.2e-55 Score=414.03 Aligned_cols=290 Identities=20% Similarity=0.299 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHhhhhHHHHhhcChHHHHHHHHhhccCCCCCCccccccccccccccccccCCCCcccCCCCCCCCCcccc
Q 015748 53 SLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNR 132 (401)
Q Consensus 53 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vk~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (401)
+++....+++|++||+++.+++||||++|+|+|++..... ......
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~----------------------------------~~~~~~ 49 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ----------------------------------ISAEKQ 49 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS----------------------------------CCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc----------------------------------cccccc
Confidence 4456789999999999999999999999999999863210 011236
Q ss_pred CCChHHHHHHHHHhhccchhccchhhhhhccccccceecchHHHHHHHHhhhcCCCCC-CCCchhhhhHHHHHHHHHHHh
Q 015748 133 YKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP-MLTPYVPLVAGSVARSLACIS 211 (401)
Q Consensus 133 ~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~-~~~~~~~~~ag~~ag~~~~~v 211 (401)
|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+++.+....+.... .......+++|++||+++.++
T Consensus 50 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~ 129 (297)
T 1okc_A 50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129 (297)
T ss_dssp CCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999964332221110 012356889999999999999
Q ss_pred hchHHHHHHHhhcccccCC-CCCCCchhhHHhhhhccccccccccccccchhcccchHHhhhhhcccchhhhhchHHHHH
Q 015748 212 CYPIELARTRMQAFTETQS-GVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRR 290 (401)
Q Consensus 212 ~~Pldviktr~q~~~~~~~-~~~y~~~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~ll~~~~~~~~~f~~ye~lk~ 290 (401)
++|+|+||+|||++..... ..+|+++++++++|+++| |++|||||+.+++++.+|+.+++|.+||.+|+
T Consensus 130 ~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~ 199 (297)
T 1okc_A 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD----------GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG 199 (297)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHH----------CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhc----------cHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999854321 237899999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhCCCccccccchhhhhhhHHHhhhHhhhccchhhhhhhhhccCCC--CccCCCCHHHHHHHHHHhcCccccccch
Q 015748 291 SILSLVGDDARVTSILGANFTGGFVAGSIAAAATCPLDVSRTRHQIEKDP--TRALNMTTRQTLMEIWRDGGMKGLFTGV 368 (401)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvr~rlq~~~~~--~~~~y~~~~~~~~~i~~~eG~~g~yrG~ 368 (401)
.+.+.. .......+++|++||++++++++|+||||+|||++... ....|.++++|+++|+++||++|||||+
T Consensus 200 ~~~~~~------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 273 (297)
T 1okc_A 200 MLPDPK------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 273 (297)
T ss_dssp SSCGGG------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTH
T ss_pred HhccCC------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecch
Confidence 764321 12334578999999999999999999999999997542 2346899999999999999999999999
Q ss_pred hHHHhhhcccceeeHHhHHHHHHHH
Q 015748 369 GPRVARAGPSVGIVVSFYEVVKYAL 393 (401)
Q Consensus 369 ~~~l~r~~p~~~i~~~~ye~~~~~l 393 (401)
.|+++|. +.++++|.+||.+++++
T Consensus 274 ~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 274 WSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999996 46889999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.2e-35 Score=275.63 Aligned_cols=194 Identities=19% Similarity=0.281 Sum_probs=166.8
Q ss_pred CchhhhhHHHHHHHHHHHhhchHHHHHHHhhcccccC---CCCCCCchhhHHhhhhccccccccccccccchhcccchHH
Q 015748 193 TPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQ---SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGA 269 (401)
Q Consensus 193 ~~~~~~~ag~~ag~~~~~v~~Pldviktr~q~~~~~~---~~~~y~~~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~ 269 (401)
+.+..+++|++||+++.++++|+|+||+|+|++.... ...+|+++++++++++++| |++|||||+.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~ 75 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ----------GFLSFWRGNLA 75 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHH----------CGGGGGTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhcc----------chhheecccHH
Confidence 3567899999999999999999999999999986421 1237899999999999999 99999999999
Q ss_pred hhhhhcccchhhhhchHHHHHHHhhhhCCCccccccchhhhhhhHHHhhhHhhhccchhhhhhhhhccCCC--CccCCCC
Q 015748 270 QLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGANFTGGFVAGSIAAAATCPLDVSRTRHQIEKDP--TRALNMT 347 (401)
Q Consensus 270 ~ll~~~~~~~~~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvr~rlq~~~~~--~~~~y~~ 347 (401)
.+++.+|+.+++|.+||.+|+.+....+.+..........+++|++||++++++++|+|+||+|||++... ....|.+
T Consensus 76 ~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~ 155 (297)
T 1okc_A 76 NVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTG 155 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCC
Confidence 99999999999999999999965432222211112334588999999999999999999999999998532 2356899
Q ss_pred HHHHHHHHHHhcCccccccchhHHHhhhcccceeeHHhHHHHHHHHHhh
Q 015748 348 TRQTLMEIWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQR 396 (401)
Q Consensus 348 ~~~~~~~i~~~eG~~g~yrG~~~~l~r~~p~~~i~~~~ye~~~~~l~~~ 396 (401)
+++|+++|+++||++|||||+.++++|.+|.+++.|.+||.+++.+.+.
T Consensus 156 ~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999987554
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=270.59 Aligned_cols=189 Identities=19% Similarity=0.282 Sum_probs=168.4
Q ss_pred CCCHHHHHHHHhhhhHHHHhhcChHHHHHHHHhhccCCCCCCccccccccccccccccccCCCCcccCCCCCCCCCcccc
Q 015748 53 SLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNR 132 (401)
Q Consensus 53 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vk~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (401)
..+....+++|++||+++.++++|+|+||+|+|++... .....
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------------------------------~~~~~ 143 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------------------------------GGGRR 143 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-------------------------------------CCSSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-------------------------------------CCCCC
Confidence 36778999999999999999999999999999998621 11236
Q ss_pred CCChHHHHHHHHHhhccchhccchhhhhhccccccceecchHHHHHHHHhhhcCCCCCCCCchhhhhHHHHHHHHHHHhh
Q 015748 133 YKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISC 212 (401)
Q Consensus 133 ~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~ 212 (401)
|++.++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+...... ..+....+++|++||+++++++
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~---~~~~~~~~~~g~~ag~~~~~~~ 220 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM---TDDLPCHFTSAFGAGFCTTVIA 220 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC---CSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchHHHHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999999999999999999999999988654322 2356788999999999999999
Q ss_pred chHHHHHHHhhcccccCCCCCCCchhhHHhhhhccccccccccccccchhcccchHHhhhhhcccchhhhhchHHHHHHH
Q 015748 213 YPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSI 292 (401)
Q Consensus 213 ~Pldviktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~ll~~~~~~~~~f~~ye~lk~~~ 292 (401)
+|+|+||+|||++.. ..|+++++++++++++| |++|||||+.+++++.+|..+++|.+||.+|+.+
T Consensus 221 ~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~~e----------G~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l 286 (303)
T 2lck_A 221 SPVDVVKTRYMNSAL----GQYHSAGHCALTMLRKE----------GPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286 (303)
T ss_dssp HHHHHHHHHHTTCCS----SSCCSHHHHHHHHHHSS----------CTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHhccc----cccCCHHHHHHHHHHHc----------ChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999763 26899999999999999 9999999999999999999999999999999876
Q ss_pred hhh
Q 015748 293 LSL 295 (401)
Q Consensus 293 ~~~ 295 (401)
.+.
T Consensus 287 ~~~ 289 (303)
T 2lck_A 287 MAA 289 (303)
T ss_dssp CCH
T ss_pred HHh
Confidence 543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.54 E-value=27 Score=24.90 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=28.8
Q ss_pred CccccccchhHHHhhhcccceeeHHhHHHHHHHHHhhh
Q 015748 360 GMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQRH 397 (401)
Q Consensus 360 G~~g~yrG~~~~l~r~~p~~~i~~~~ye~~~~~l~~~~ 397 (401)
|+...+|-+...+++++|..++.+.+|+...+.....+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666788899999999999999988775544
No 6
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=14.74 E-value=99 Score=20.24 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=29.0
Q ss_pred hccchhhhhhhhhccCCCCccCCCCHHHHHHHHHHhcCccccccch
Q 015748 323 ATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGV 368 (401)
Q Consensus 323 ~t~Pldvvr~rlq~~~~~~~~~y~~~~~~~~~i~~~eG~~g~yrG~ 368 (401)
+--|+|+|.-.. .+.......-.+....-|.-|+-|.-+.+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 345888776544 222222222236677778888989999999995
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.85 E-value=98 Score=27.40 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=28.8
Q ss_pred hhHhhhccchhhhhhhhhccCCCCccCCCCHHHHHHHHHHhcCccccccchhHHHhh
Q 015748 318 SIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVAR 374 (401)
Q Consensus 318 ~~~~~~t~Pldvvr~rlq~~~~~~~~~y~~~~~~~~~i~~~eG~~g~yrG~~~~l~r 374 (401)
.++++=-||||.+|-.++.-- ++-..+++.+.++| ||+-+...-+|
T Consensus 273 qLaTFdnypfdllRfqL~Sli--------stp~~I~e~i~K~G---LFk~it~~~~r 318 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI--------STPALIREKIAKEG---LFKIITSNTLR 318 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC--------CCCHHHHHHHHHSC---SEEECC-----
T ss_pred eeecCCCCCHHHHHHHhhhhc--------cChHHHHHHHHhcC---ceEEEeccccc
Confidence 566777899999988777643 22356788899987 45444444444
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=12.45 E-value=73 Score=17.90 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.1
Q ss_pred hhhhhhHHHhhhHhhhccchhh
Q 015748 308 ANFTGGFVAGSIAAAATCPLDV 329 (401)
Q Consensus 308 ~~~~~g~~ag~~~~~~t~Pldv 329 (401)
.++++-.++|++.++.+|-++.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 4667778888888888887763
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=11.96 E-value=42 Score=23.88 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=30.4
Q ss_pred CccccccchhHHHhhhcccceeeHHhHHHHHHHHHhhh
Q 015748 360 GMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQRH 397 (401)
Q Consensus 360 G~~g~yrG~~~~l~r~~p~~~i~~~~ye~~~~~l~~~~ 397 (401)
|+...+|-+.-.++.++|..++.+.+|+...+.....+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 55566777777888999999999999999988775543
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=11.77 E-value=39 Score=22.33 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHhcCccccc
Q 015748 346 MTTRQTLMEIWRDGGMKGLF 365 (401)
Q Consensus 346 ~~~~~~~~~i~~~eG~~g~y 365 (401)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 47888999999999988876
Done!