Query 015751
Match_columns 401
No_of_seqs 137 out of 441
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 1.2E-50 2.5E-55 414.4 40.1 350 32-390 26-388 (492)
2 cd00025 BPI1 BPI/LBP/CETP N-te 100.0 1.7E-46 3.7E-51 348.0 27.8 220 35-260 1-223 (223)
3 smart00328 BPI1 BPI/LBP/CETP N 100.0 1.6E-46 3.6E-51 348.9 25.7 221 39-264 1-225 (225)
4 PF01273 LBP_BPI_CETP: LBP / B 100.0 3E-28 6.4E-33 215.5 23.0 161 44-216 1-163 (164)
5 PF02886 LBP_BPI_CETP_C: LBP / 100.0 3.1E-28 6.7E-33 228.4 14.4 139 249-390 1-144 (238)
6 cd00264 BPI BPI/LBP/CETP domai 99.9 1.2E-22 2.6E-27 186.5 23.6 201 35-258 1-208 (208)
7 smart00329 BPI2 BPI/LBP/CETP C 99.9 1.2E-23 2.7E-28 192.1 14.2 107 284-390 1-112 (202)
8 cd00026 BPI2 BPI/LBP/CETP C-te 99.9 7.1E-22 1.5E-26 180.2 14.7 104 287-390 1-107 (200)
9 cd00264 BPI BPI/LBP/CETP domai 99.0 3.3E-09 7.1E-14 97.2 10.0 101 287-390 1-105 (208)
10 PF06585 JHBP: Haemolymph juve 98.5 1.1E-05 2.4E-10 76.0 19.6 190 37-227 31-245 (248)
11 smart00700 JHBP Juvenile hormo 98.4 0.00015 3.3E-09 67.4 24.3 183 42-226 16-219 (225)
12 PF14613 DUF4449: Protein of u 93.9 0.2 4.3E-06 44.0 6.8 55 170-224 2-57 (164)
13 PF14356 DUF4403: Domain of un 74.8 1E+02 0.0022 31.4 16.2 65 158-223 316-384 (427)
14 PF10296 DUF2404: Putative int 69.8 32 0.0007 26.8 7.7 23 47-69 16-38 (91)
15 PF06585 JHBP: Haemolymph juve 51.7 2E+02 0.0043 26.5 15.5 161 37-208 28-214 (248)
16 TIGR02610 PHA_gran_rgn putativ 45.7 97 0.0021 24.4 6.5 30 177-206 61-90 (91)
17 PF09650 PHA_gran_rgn: Putativ 38.0 65 0.0014 25.1 4.4 24 182-205 63-86 (87)
18 PRK10833 putative assembly pro 30.5 3.8E+02 0.0082 28.7 10.3 74 78-155 450-543 (617)
19 TIGR03545 conserved hypothetic 29.0 57 0.0012 34.6 3.6 15 136-150 452-466 (555)
20 cd00025 BPI1 BPI/LBP/CETP N-te 26.6 5E+02 0.011 23.7 12.3 51 173-224 122-184 (223)
21 PF02251 PA28_alpha: Proteasom 22.3 2.4E+02 0.0053 20.6 4.9 32 192-223 10-41 (64)
22 PF06597 Clostridium_P47: Clos 20.0 9.8E+02 0.021 24.7 16.6 30 38-69 237-266 (456)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=1.2e-50 Score=414.39 Aligned_cols=350 Identities=27% Similarity=0.413 Sum_probs=315.3
Q ss_pred CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEE
Q 015751 32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV 110 (401)
Q Consensus 32 ~~pGi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i 110 (401)
.+||+++|++++|++|+++.+...+++++.++++||+.++++.+++|++.|.+++++|.++..+.+.+++ +..++.|++
T Consensus 26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~ 105 (492)
T KOG4160|consen 26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI 105 (492)
T ss_pred cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence 6788999999999999999999999999999999999999999888999999999999999999999999 778999999
Q ss_pred eCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-e-cCCeeEEEEeeeeEEeccEEEEEECCchhhHH
Q 015751 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (401)
Q Consensus 111 ~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~-~~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n 188 (401)
+++++.+.++|++ .. |+ ...+|.+++.++|+++.+.+.+. + .+|++.++...|.+.++++++.+++-.+|+++
T Consensus 106 ~n~~~~~~~~~~~-~~-~~---~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~ 180 (492)
T KOG4160|consen 106 TNANISLSGRWKA-RT-RF---LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ 180 (492)
T ss_pred eeEEEEEeeeeEe-EE-EE---EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence 9999999999999 43 33 24459999999999999999998 6 78999999999999999999888855999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEe-ccCcc
Q 015751 189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS 266 (401)
Q Consensus 189 ~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~~~~-~~~~~ 266 (401)
.|.+.+++.||..++.++|+.+++.+ ..++.++++.|+..++|+.+.+||+++++|.+|++++|++++|++++ .++..
T Consensus 181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~ 260 (492)
T KOG4160|consen 181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT 260 (492)
T ss_pred HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence 99999999999999999999999999 58999999999999999999999999999999999999999999999 55544
Q ss_pred ccCCCCCCCCCc-cCCCCCCceEEEEEchhhhhhHHHHHHhcCeeeEEe-ccc-CCcc--ccccch--hhhchhhhhhcC
Q 015751 267 MLNYYHKGFESS-ASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII-DDI-PEKS--VLNTSG--WRHIIPQLYTQY 339 (401)
Q Consensus 267 ~~p~~~~~~p~~-~~~~~~~~Ml~l~lSey~~NS~~~~~~~~g~L~~~i-~~i-p~~~--~LnTs~--~g~~iP~L~~~y 339 (401)
.+ + ..|.. ..++++++|+++|+|||++||++++||++|.|++++ ++. |.++ .++|+. +|+++|+|+++|
T Consensus 261 ~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~ 336 (492)
T KOG4160|consen 261 PP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY 336 (492)
T ss_pred Cc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence 33 2 22333 334457999999999999999999999999999999 444 4444 466664 677999999999
Q ss_pred CCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751 340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLK 390 (401)
Q Consensus 340 Pn~~~~l~v~~~~~P~v~i~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~ 390 (401)
||+++++++++.++|.|.+++++..+...+.+.+++. ++++.++++++.++
T Consensus 337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 388 (492)
T KOG4160|consen 337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVD 388 (492)
T ss_pred CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEE
Confidence 9999999999999999999999999999999998855 79999999998887
No 2
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=1.7e-46 Score=348.04 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=212.7
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEEeCc
Q 015751 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGA 113 (401)
Q Consensus 35 Gi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i~~~ 113 (401)
|+++|||+|||+|+++++++.+++++.++++||++++.+++++|+++|+++|++|+++++|++++++ |++|+.+.++++
T Consensus 1 Gi~~rlt~~gL~y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~ 80 (223)
T cd00025 1 GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSSIKLVEVKGLDLSISNV 80 (223)
T ss_pred CeEEEEcHHHHHHHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCCceEEcCCCceEEEEeCC
Confidence 7999999999999999999999999999999999999999989999999999999999999999999 999999999999
Q ss_pred EEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeccEEEEEECCchhhHHHHHH
Q 015751 114 TADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFE 192 (401)
Q Consensus 114 ~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~~~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~~ 192 (401)
++.++++|+|+|. + ++++|.+++.++|+++++.+.++ +..|+|+++..+|++++++++++++||.+|+||.|.+
T Consensus 81 si~l~~~w~~~~~---~--i~~~G~~~l~v~gv~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~~ 155 (223)
T cd00025 81 SIGLSGVWKYNYR---F--ILDGGNVELSVEGMNIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMN 155 (223)
T ss_pred eEEEEEEEEEeeE---E--EEecEEEEEEEeEEEEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHHH
Confidence 9999999999985 3 69999999999999999999998 6679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEE
Q 015751 193 AFEGKIKSAVESAVTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFT 260 (401)
Q Consensus 193 ~~~~~I~~~l~~~iC~~I~~~i~-~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~~~ 260 (401)
.+++.+|..+++++|++++..++ .+|..|+ +|+.+|+|+.+.+||+|+++|.+|++|+++++||+||
T Consensus 156 ~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-lp~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 156 FIESLLKKVLKGQLCPVIDASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-CceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 99999999999999999999995 6788888 9999999999999999999999999999999999996
No 3
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=100.00 E-value=1.6e-46 Score=348.89 Aligned_cols=221 Identities=22% Similarity=0.379 Sum_probs=214.2
Q ss_pred EechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEEeCcEEEE
Q 015751 39 VISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADC 117 (401)
Q Consensus 39 rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i~~~~i~l 117 (401)
|||++||+|+++++..+++++++++++||++++++++++|+++|.+++|+|+++++|.+++++ |+.|+.+.++++++.+
T Consensus 1 rit~~gL~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~v~~~~~~i~I~~~~~~~s~~~~~p~~Gi~l~is~~si~~ 80 (225)
T smart00328 1 RITQKGLDYAAQEGALALQKELPKITIPDIRGDFAIKLLGIGHYSIYSLSISRLELPSSQLRFQPSKGLRLSISNLSLRV 80 (225)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCcCceecccccEEEEEEEEEEEEeccCCCCccccCCCCceEEEEcCceEEE
Confidence 799999999999999999999999999999999999988999999999999999999999999 9999999999999999
Q ss_pred EEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeccEEEEEECC-chhhHHHHHHHHH
Q 015751 118 GMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFE 195 (401)
Q Consensus 118 ~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~~~G~~~v~~~~C~~~i~~v~i~~~g~-~s~l~n~f~~~~~ 195 (401)
+|+|+|+|. + ++++|.+++.++++++++.+.+. +.+|+|+++..+|++++++++++++|+ ++|+||.|.+.++
T Consensus 81 ~~~~~~~~~---~--i~~~G~~~~~v~~~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i~ 155 (225)
T smart00328 81 SGDLKGSLN---F--IKLEGNFQLSVEGLSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFIE 155 (225)
T ss_pred EEEEEEEEE---E--EEeeeEEEEEEeeEEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHHH
Confidence 999999975 3 79999999999999999999998 899999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEeccC
Q 015751 196 GKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISG 264 (401)
Q Consensus 196 ~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~~~~~~~ 264 (401)
+.||..++++||++|++.+ +++|++|+++|+.+++|+.+.+||+|+++|.+|++|++++++|+|++.++
T Consensus 156 ~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 156 NTLRNVLEGQICPVIDSAVSNKMNDYLQTLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 9999999999999999998 68999999999999999999999999999999999999999999999764
No 4
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.96 E-value=3e-28 Score=215.53 Aligned_cols=161 Identities=29% Similarity=0.544 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEEeCcEEEEEEEEE
Q 015751 44 GLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADCGMNWE 122 (401)
Q Consensus 44 gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i~~~~i~l~g~w~ 122 (401)
||+|+++++.+++++++++++|||++++++.+++|++.|++++++|+++++|+.++++ |+.|+.+...++++.++++|.
T Consensus 1 gL~y~~~~~~~~l~~~l~~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 80 (164)
T PF01273_consen 1 GLDYANQVGIQILQKELQKIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQSSLELSPDGGIVLSIIPASASLSGNWP 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----EEEEECETTTCCEEEEEEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhhcCCCCCcccccccccccceEEEEEeEEEEEeecCCccceECCCCceEEEEeeeEEEEEEEEe
Confidence 7999999999999999999999999999998888999999999999999999999999 999999999999999999999
Q ss_pred EEEccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeccEEEEEECCchhhHHHHHHHHHHHHHHH
Q 015751 123 YSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSA 201 (401)
Q Consensus 123 ~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~~~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~~ 201 (401)
++.. ++ .. +.++++++.+.++ +.+|+|++.+.+|++++++++++++||.+|+||.|.+.+++.|++.
T Consensus 81 ~~~~--~i---~~-------~~~v~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~~ 148 (164)
T PF01273_consen 81 YKGG--FI---KI-------AVGVDISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRSL 148 (164)
T ss_dssp EEEC--CE---EE-------EEEEEEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHHH
T ss_pred cCCC--hh---hh-------eeeEEEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 9853 32 22 5578999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 015751 202 VESAVTKKISELITK 216 (401)
Q Consensus 202 l~~~iC~~I~~~i~~ 216 (401)
+++++|+.|++.++.
T Consensus 149 l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 149 LQKKICPVINSLLSN 163 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhcchHhHHhhcC
Confidence 999999999888754
No 5
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=99.95 E-value=3.1e-28 Score=228.37 Aligned_cols=139 Identities=24% Similarity=0.378 Sum_probs=115.7
Q ss_pred ceeEEeEeEEEEeccCccccCCCCCCCCCccCCCCCCceEEEEEchhhhhhHHHHHHhcCeeeEEe--cccCCcc--ccc
Q 015751 249 SSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLN 324 (401)
Q Consensus 249 ~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~Ml~l~lSey~~NS~~~~~~~~g~L~~~i--~~ip~~~--~Ln 324 (401)
+|+|+++||+|++.+++.++|+ .+|....+.++++|+++|+|||++||++|+||++|+|+++| +++|+.+ .||
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~~~---~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPPPF---PPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB---SS-----EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCCCC---CCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 5899999999999998776663 22322234688999999999999999999999999999999 6899976 789
Q ss_pred cchhhhchhhhhhcCCCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751 325 TSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLK 390 (401)
Q Consensus 325 Ts~~g~~iP~L~~~yPn~~~~l~v~~~~~P~v~i~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~ 390 (401)
|.|+|.++|||+++|||+.++|++++.++|.|+++++++++++.+++++++. ++++..++|.++++
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~ 144 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVD 144 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEE
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999976 68889999999987
No 6
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.91 E-value=1.2e-22 Score=186.49 Aligned_cols=201 Identities=21% Similarity=0.290 Sum_probs=184.2
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeec-----ceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEE
Q 015751 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIP-----LIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLL 108 (401)
Q Consensus 35 Gi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~-----~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l 108 (401)
|+++|+++++|+|+++.+.+..+. +..++.|++++..+++ ..|.+.|..++++|+.+..+..++++ | +|+.+
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~-~g~~~ 78 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGAL-LLTLTIPDIPKALKLKLSGIIPLGAKKYPDMNLQLKILSLSSPTLKLSP-KGLDL 78 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHh-hcCcccCCCCCccccccccccceEEEEeeCCceEEEEEecCCCeEEEec-CCEEE
Confidence 689999999999999999999988 8889999999988764 46999999999999999999999999 6 89999
Q ss_pred EEeCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEEecCCeeEEEEeeeeEEeccEEEEEECCchhhHH
Q 015751 109 AVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (401)
Q Consensus 109 ~i~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~~~~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n 188 (401)
.++ +++.+++.|.++ ++|.+++.++ +++++++++..++|++++...+|++++++++++++|
T Consensus 79 ~~~-~~i~~~~~~~~~----------~~~~~~~~l~-v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g------- 139 (208)
T cd00264 79 SQS-VSIELFVTWPAS----------DGGNPLFSLE-VEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG------- 139 (208)
T ss_pred EEE-EEEEEEEEeccC----------CCCCEEEEEE-EEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec-------
Confidence 999 999999998864 4677788887 889999999844499999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEE
Q 015751 189 ALFEAFEGKIKSAVESAVTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGL 258 (401)
Q Consensus 189 ~f~~~~~~~I~~~l~~~iC~~I~~~i~-~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~ 258 (401)
|.+.+.+.+++.+++++|+.+...++ +++..++.+|+ +|++....+||+++.+|.++++|++++++|+
T Consensus 140 -~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 140 -FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLPV-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCc-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 66778999999999999999999985 78999999999 9999999999999999999999999999874
No 7
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=99.91 E-value=1.2e-23 Score=192.14 Aligned_cols=107 Identities=27% Similarity=0.449 Sum_probs=102.1
Q ss_pred CCceEEEEEchhhhhhHHHHHHhcCeeeEEe--cccCCcc--ccccchhhhchhhhhhcCCCCceEEEEeeCCCCEEEEE
Q 015751 284 PAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359 (401)
Q Consensus 284 ~~~Ml~l~lSey~~NS~~~~~~~~g~L~~~i--~~ip~~~--~LnTs~~g~~iP~L~~~yPn~~~~l~v~~~~~P~v~i~ 359 (401)
++||+|+|+|||++||++++||++|+|+++| +++|+.+ +|||+|+|.++|||+++|||++++|++++.++|.|+++
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 4799999999999999999999999999999 7999985 89999999999999999999999999999999999999
Q ss_pred eCcEEEEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751 360 EHDIGGTIDLDMTINVL-DSSEVIPVACISLK 390 (401)
Q Consensus 360 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~ 390 (401)
++++++.+.+.+++++. |++...++|+++++
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~ 112 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVD 112 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEE
Confidence 99999999999999977 57779999999988
No 8
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.88 E-value=7.1e-22 Score=180.24 Aligned_cols=104 Identities=38% Similarity=0.537 Sum_probs=98.5
Q ss_pred eEEEEEchhhhhhHHHHHHhcCeeeEEe--cccCCccccccchhhhchhhhhhcCCCCceEEEEeeCCCCEEEEEeCcEE
Q 015751 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (401)
Q Consensus 287 Ml~l~lSey~~NS~~~~~~~~g~L~~~i--~~ip~~~~LnTs~~g~~iP~L~~~yPn~~~~l~v~~~~~P~v~i~~~~~~ 364 (401)
|+|+|+|||++||++++||++|+|+++| +++|...+|||+.+|.++|||+++|||++++|++++.++|.+++++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 9999999999999999999999999999 57885569999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751 365 GTIDLDMTINVL-DSSEVIPVACISLK 390 (401)
Q Consensus 365 ~~~~~~~~~~v~-~~~~~~~~~~l~~~ 390 (401)
+++.+++++++. |+++..|+|+++++
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~ 107 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVD 107 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEE
Confidence 999999999987 56666999999987
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=98.96 E-value=3.3e-09 Score=97.21 Aligned_cols=101 Identities=27% Similarity=0.407 Sum_probs=89.0
Q ss_pred eEEEEEchhhhhhHHHHHHhcCeeeEEe--cccCCccccccchhhhchhhhhhcCCCCceEEEEeeCCCCEEEEEeCcEE
Q 015751 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (401)
Q Consensus 287 Ml~l~lSey~~NS~~~~~~~~g~L~~~i--~~ip~~~~LnTs~~g~~iP~L~~~yPn~~~~l~v~~~~~P~v~i~~~~~~ 364 (401)
|+++++|||++|++.++++++|.+...+ .++++...+.++ .++|+++.+||+..++++.....+|.+.++++|+.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999997777 577775544444 79999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCC-ceeeEEEEEee
Q 015751 365 GTIDLDMTINVL-DSS-EVIPVACISLK 390 (401)
Q Consensus 365 ~~~~~~~~~~v~-~~~-~~~~~~~l~~~ 390 (401)
+.+.+++++++. +.+ ...+.|.++++
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~ 105 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVE 105 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEE
Confidence 999999999977 554 78888988865
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=98.54 E-value=1.1e-05 Score=75.96 Aligned_cols=190 Identities=14% Similarity=0.192 Sum_probs=113.5
Q ss_pred EEEec----hhHHHHHHHHHHHHHHhhcCCCCCCCccc----eeeecc---eeeEEEEEecEEEEEEEe---CCceeEeC
Q 015751 37 SAVIS----KKGLDFFKNYLINKATSSIIPLELPDIEK----SKKIPL---IGKVHMALSNIIIYSVEI---DSSYVETG 102 (401)
Q Consensus 37 ~~rit----~~gL~y~~~~~~~~l~~~l~~~~iPdi~g----~~~~~~---~G~v~~~ls~i~I~~~~~---p~~~v~~~ 102 (401)
+++.+ .+-+..+.+...+.+.+-++.+.+|.+.- ..++.. ..++...++|+++++++- ...++.+.
T Consensus 31 ~C~~~~~~~~~cl~~~~~~~~~~l~~Gip~l~ip~ldPl~i~~~~~~~~~~~~~~~~~~~n~~i~Gls~~~v~~~~~d~~ 110 (248)
T PF06585_consen 31 PCKRSDPNLNECLRESIENFRPYLAKGIPELGIPPLDPLYIPEIDINFNSGPINLKANFKNVKIYGLSNFEVNKVSVDLK 110 (248)
T ss_dssp -BBTT----HHHHHHHHHHHHHHHTCEBGGGTBEETTTEEEEEEEEEE-TTCTTEEEEEEEEEEESGGG-EEEEEEEETT
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhcCCCcccCCCCCCCEEecceEEEeecCCceEEEEEEeEEEeccCCcEEEEEEEcCC
Confidence 45555 34444555556677776666666665531 111111 123566778888875433 22233334
Q ss_pred CCeEEEEEeCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE--ecCC--eeEEEEeeeeEEeccEEEE
Q 015751 103 DPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK--EQGG--IVKVILVDCGSHVRDISIK 178 (401)
Q Consensus 103 ~~gi~l~i~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~--~~~G--~~~v~~~~C~~~i~~v~i~ 178 (401)
...+.+.+.--.+.+.|+|+..-....+| ++.+|.+++.+.++++...+... ..+| +++++..+++.++++++++
T Consensus 111 ~~~~~~~~~~P~l~i~g~Y~~~g~i~~~p-i~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~ 189 (248)
T PF06585_consen 111 KLKLNFDLTFPKLSIKGKYEIDGKILLLP-ISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFD 189 (248)
T ss_dssp TTEEEEEEEE-EEEEEEEEEEEEEECCEC-CCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEE
T ss_pred CcEEEEEEEEEEEEEEEEEEEeeeeeeeE-EeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEE
Confidence 55677777666888889988885533366 88999999999999999888875 3344 5667677777788999999
Q ss_pred EECC---c---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCc
Q 015751 179 VDGG---A---SWLYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQ 227 (401)
Q Consensus 179 ~~g~---~---s~l~n~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~ 227 (401)
+.+- . +-..|-+.+..-..+-+.++..+-+.+.+.+ +.+|+.|..+|..
T Consensus 190 ~~nl~~g~~~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~~ 245 (248)
T PF06585_consen 190 LENLFNGNKELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPYD 245 (248)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CC
T ss_pred eeccCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 8753 1 2222322222222333333444455555555 5578888888753
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=98.44 E-value=0.00015 Score=67.35 Aligned_cols=183 Identities=16% Similarity=0.243 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCccc----eeeeccee----eEEEEEecEEEEEEEeCCc-eeEe--CCCeEEEEE
Q 015751 42 KKGLDFFKNYLINKATSSIIPLELPDIEK----SKKIPLIG----KVHMALSNIIIYSVEIDSS-YVET--GDPDLLLAV 110 (401)
Q Consensus 42 ~~gL~y~~~~~~~~l~~~l~~~~iPdi~g----~~~~~~~G----~v~~~ls~i~I~~~~~p~~-~v~~--~~~gi~l~i 110 (401)
.+-+.-+.+.+.+.+.+-++.+.||.+.- ...+. .| .+...++|+++++++--.. +++. ....+.+.+
T Consensus 16 ~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~-~~~~~~~~~~~~~n~~i~Gl~~~~i~~~~~~~~~~~~~~~~ 94 (225)
T smart00700 16 SECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKIS-IGSGVIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKI 94 (225)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEe-cCCCceEEEEEEEEeEEEcCcceEEEEEEecCCCcEEEEEE
Confidence 45555666666777777777777776541 11111 12 4567788888887642211 2333 345677778
Q ss_pred eCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCC--eeEEEEeeeeEEeccEEEEEECCc----
Q 015751 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGG--IVKVILVDCGSHVRDISIKVDGGA---- 183 (401)
Q Consensus 111 ~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~~~G--~~~v~~~~C~~~i~~v~i~~~g~~---- 183 (401)
.--.+.+.|+|+.+-+...+| ++.+|.+.+.++++++.+.+... ..+| ++++...++...++++++++++-.
T Consensus 95 ~~p~l~~~g~Y~~~g~ll~lp-i~g~G~~~~~l~n~~~~~~~~~~~~~~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn~ 173 (225)
T smart00700 95 EFPKLNVKGDYKLDGRLLGLP-LNGKGDANFTLENVKIRGTLKLKLGPDGKTYLKIKSLKVNFEVGDVKSHLDNLFNGNK 173 (225)
T ss_pred ECCcEEEEeeeEeeeEEEEEE-ecCCCcEEEEEEeeEEEEEEEEEEccCCeEEEEEEEEEEEEEeceEEEEeeccCCCCH
Confidence 777789999998875433466 88999999999999888887775 3356 788888899999999999988642
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCC
Q 015751 184 --SWLYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPK 226 (401)
Q Consensus 184 --s~l~n~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~ 226 (401)
+-..|-|.+.--..+.+.++..+.+++...+ ..+|+.+..+|.
T Consensus 174 ~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~ 219 (225)
T smart00700 174 DLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPI 219 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3344555555556666777777777777766 678899988875
No 12
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=93.92 E-value=0.2 Score=44.02 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=48.4
Q ss_pred EEeccEEEEEECC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015751 170 SHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSL 224 (401)
Q Consensus 170 ~~i~~v~i~~~g~-~s~l~n~f~~~~~~~I~~~l~~~iC~~I~~~i~~ln~~L~~~ 224 (401)
+++++++|++.-. +.+||.+|+.++-+.+|..|++.|-++|++.++.++..+-.+
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~i 57 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYDI 57 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5688999999976 888999999999999999999999999999998887776544
No 13
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=74.76 E-value=1e+02 Score=31.40 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCeeEEEEeeeeEEeccEEEEEECCchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 015751 158 GGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAV----TKKISELITKLDSIFQS 223 (401)
Q Consensus 158 ~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~~l~~~i----C~~I~~~i~~ln~~L~~ 223 (401)
.|+|......=...+.|+++.++... ++.+.-.-.+++.|++.|+++. -+.+.+.-+.+++.|..
T Consensus 316 ~G~P~yD~~~~~l~l~dld~~~~t~~-~l~~~a~wl~~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~~ 384 (427)
T PF14356_consen 316 SGRPVYDPATQTLRLEDLDFDLDTKN-FLLKTAAWLLHGRIRKAIEEKLVFDLGPQLEEAKKKINAALAN 384 (427)
T ss_pred EEEEEECCCCCEEEEEeeEEEecccc-hHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 46666666677788889888887652 5666555566677777777765 44444444667777776
No 14
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=69.82 E-value=32 Score=26.83 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcc
Q 015751 47 FFKNYLINKATSSIIPLELPDIE 69 (401)
Q Consensus 47 y~~~~~~~~l~~~l~~~~iPdi~ 69 (401)
..++...+.|++++++++.|.+-
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl 38 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFL 38 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCcc
Confidence 45677888999999999888764
No 15
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=51.68 E-value=2e+02 Score=26.53 Aligned_cols=161 Identities=13% Similarity=0.168 Sum_probs=72.0
Q ss_pred EEEechhH---HHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe--CC---CeEE-
Q 015751 37 SAVISKKG---LDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET--GD---PDLL- 107 (401)
Q Consensus 37 ~~rit~~g---L~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~--~~---~gi~- 107 (401)
.+.--++. ++.--....+.+...+.+ -+|++.-.. +.. +.+.++++.. .-+...++. .+ .|+.
T Consensus 28 ~~~~C~~~~~~~~~cl~~~~~~~~~~l~~-Gip~l~ip~----ldP--l~i~~~~~~~-~~~~~~~~~~~~n~~i~Gls~ 99 (248)
T PF06585_consen 28 YIKPCKRSDPNLNECLRESIENFRPYLAK-GIPELGIPP----LDP--LYIPEIDINF-NSGPINLKANFKNVKIYGLSN 99 (248)
T ss_dssp S---BBTT----HHHHHHHHHHHHHHHTC-EBGGGTBEE----TTT--EEEEEEEEEE--TTCTTEEEEEEEEEEESGGG
T ss_pred ccCcCCCCCccHHHHHHHHHHHHHHhhcC-CCcccCCCC----CCC--EEecceEEEe-ecCCceEEEEEEeEEEeccCC
Confidence 67778888 776666677777777775 688764322 222 3444555443 111111111 10 0100
Q ss_pred EEEeCcEEEEE-EEEEEEEccccceeeeeeeEEEEEEe--cEEE----EEEEEEE--ecCCeeEEEEee----eeEEecc
Q 015751 108 LAVSGATADCG-MNWEYSYGSWLLPTISDSGAATVLVE--GLEV----GLTVSLK--EQGGIVKVILVD----CGSHVRD 174 (401)
Q Consensus 108 l~i~~~~i~l~-g~w~~~~~~~~~P~i~~sG~~~~~v~--g~~i----~~~~~l~--~~~G~~~v~~~~----C~~~i~~ 174 (401)
..+.++++++. .+|++... +|+++.+|.-++... ...+ ...+.+. .-.++....... =+.++.+
T Consensus 100 ~~v~~~~~d~~~~~~~~~~~---~P~l~i~g~Y~~~g~i~~~pi~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~ 176 (248)
T PF06585_consen 100 FEVNKVSVDLKKLKLNFDLT---FPKLSIKGKYEIDGKILLLPISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITN 176 (248)
T ss_dssp -EEEEEEEETTTTEEEEEEE---E-EEEEEEEEEEEEEECCECCCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEE
T ss_pred cEEEEEEEcCCCcEEEEEEE---EEEEEEEEEEEEeeeeeeeEEeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEE
Confidence 22222222221 23333322 566677775555432 0001 1223332 122333333333 4456777
Q ss_pred EEEEEE-CC-chhhHHHHH--HHHHHHHHHHHHHHHHH
Q 015751 175 ISIKVD-GG-ASWLYQALF--EAFEGKIKSAVESAVTK 208 (401)
Q Consensus 175 v~i~~~-g~-~s~l~n~f~--~~~~~~I~~~l~~~iC~ 208 (401)
++++++ |+ ...+-|+|. ..+++.+.+.+++..-.
T Consensus 177 ~~~~~~~~~~~~~~~nl~~g~~~l~~~~n~~in~~~~~ 214 (248)
T PF06585_consen 177 FKIDFDLGNVKFDLENLFNGNKELSDFINKFINENWPE 214 (248)
T ss_dssp EEEEEEECEEEEEESHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEEEEEeceEEEEeeccCCCCHHHHHHHHHHHHHhHHH
Confidence 777776 54 445666665 44566666666555433
No 16
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=45.70 E-value=97 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=22.1
Q ss_pred EEEECCchhhHHHHHHHHHHHHHHHHHHHH
Q 015751 177 IKVDGGASWLYQALFEAFEGKIKSAVESAV 206 (401)
Q Consensus 177 i~~~g~~s~l~n~f~~~~~~~I~~~l~~~i 206 (401)
++++-.++||...|...+++.|++.|.+.+
T Consensus 61 v~v~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 61 IRVTAELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEEEEEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444689999988888888888877654
No 17
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=38.01 E-value=65 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=18.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Q 015751 182 GASWLYQALFEAFEGKIKSAVESA 205 (401)
Q Consensus 182 ~~s~l~n~f~~~~~~~I~~~l~~~ 205 (401)
.++|+...|.+.+++.|++.+.+.
T Consensus 63 ~Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 63 KLGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhh
Confidence 347899988888888888877664
No 18
>PRK10833 putative assembly protein; Provisional
Probab=30.46 E-value=3.8e+02 Score=28.69 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=41.4
Q ss_pred eeEEEEEecEEEEEEEeCCc----------eeE----------eCCCeEEEEEeCcEEEEEEEEEEEEccccceeeeeee
Q 015751 78 GKVHMALSNIIIYSVEIDSS----------YVE----------TGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSG 137 (401)
Q Consensus 78 G~v~~~ls~i~I~~~~~p~~----------~v~----------~~~~gi~l~i~~~~i~l~g~w~~~~~~~~~P~i~~sG 137 (401)
|++.+.+.+.+|..++++.. .+. |..-...+.+.+..++.. ++..... .+ .+.-+|
T Consensus 450 G~~~~~~~~G~i~G~nl~~~l~~a~~~~~~~~~~~~~~~~~T~f~~l~~~~~i~~Gv~~~~-~l~l~s~--~~-~~~g~G 525 (617)
T PRK10833 450 GQAHVSMDNARLEGLNIQQLIQQAVERSGGDVKAQENYDNYTRLDRLTADLTLNRGVLTLN-DLQGQSS--LL-ALTGSG 525 (617)
T ss_pred CeEEEEEecceEecCCHHHHHHHHHHhhcCCccccccccCCCChhhEEEEEEEeCCEEEcC-ccccccc--ce-EEecce
Confidence 77889999999998887531 111 111134566666665554 2222211 11 355677
Q ss_pred EEEEEEecEEEEEEEEEE
Q 015751 138 AATVLVEGLEVGLTVSLK 155 (401)
Q Consensus 138 ~~~~~v~g~~i~~~~~l~ 155 (401)
++++.-+.+...+.+++.
T Consensus 526 ~vdL~~~~lD~~l~~~~~ 543 (617)
T PRK10833 526 QLNLPKQQCDVNFNVRVT 543 (617)
T ss_pred eeccccccccEEEEEEEe
Confidence 776665556666666654
No 19
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.99 E-value=57 Score=34.59 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=7.6
Q ss_pred eeEEEEEEecEEEEE
Q 015751 136 SGAATVLVEGLEVGL 150 (401)
Q Consensus 136 sG~~~~~v~g~~i~~ 150 (401)
+|+.++.+.++.+++
T Consensus 452 ~~~~~~~~~~~~l~~ 466 (555)
T TIGR03545 452 EGNIDNKYTQVDLSV 466 (555)
T ss_pred EEEeeecccceeEee
Confidence 455555555554444
No 20
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=26.59 E-value=5e+02 Score=23.70 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred ccEEEEEECC---c--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Q 015751 173 RDISIKVDGG---A--------SWLYQALFEAFEGKIKSAVESAVTKKISELIT-KLDSIFQSL 224 (401)
Q Consensus 173 ~~v~i~~~g~---~--------s~l~n~f~~~~~~~I~~~l~~~iC~~I~~~i~-~ln~~L~~~ 224 (401)
|...+...++ . +-. +.+.+.|.+.+.+.+.+.+-++|+..++ .++..+..+
T Consensus 122 G~p~v~~~~C~~~v~~~~i~l~gg~-~~l~~~f~~~i~~~l~~~l~~~iCp~i~~~i~~~~~~~ 184 (223)
T cd00025 122 GRPKLSLSDCSSTVGSLRVHLGGSL-GWLAKLFMNFIESLLKKVLKGQLCPVIDASLVSMLESL 184 (223)
T ss_pred CCeEEEeCCCCcccCcEEEEEeCCh-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Confidence 6677766644 1 122 4677888888888888888888888884 456666543
No 21
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=22.26 E-value=2.4e+02 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015751 192 EAFEGKIKSAVESAVTKKISELITKLDSIFQS 223 (401)
Q Consensus 192 ~~~~~~I~~~l~~~iC~~I~~~i~~ln~~L~~ 223 (401)
+.|...+...-++.+++.+-+-|.++|++|++
T Consensus 10 ~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~ 41 (64)
T PF02251_consen 10 DEFRQSLTKEAENLVSNFFPQKIVELDELLKS 41 (64)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcC
Confidence 45778888888999999999999999999987
No 22
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=20.01 E-value=9.8e+02 Score=24.72 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEechhHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 015751 38 AVISKKGLDFFKNYLINKATSSIIPLELPDIE 69 (401)
Q Consensus 38 ~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~ 69 (401)
+-|+++. ++++.++|-|...+++.+.-|++
T Consensus 237 flIS~~~--Flk~~llP~L~~~f~~~t~~dF~ 266 (456)
T PF06597_consen 237 FLISEEL--FLKHVLLPALPSAFKGATADDFE 266 (456)
T ss_pred EEecHHH--HHHHHHhhhhHhhcccCCccceE
Confidence 4566554 57888888888888777766654
Done!