Query 015752
Match_columns 401
No_of_seqs 240 out of 2222
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-40 6.6E-45 350.5 24.2 327 46-400 4-357 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 8.3E-31 1.8E-35 249.1 11.0 194 191-400 1-197 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.8E-24 4E-29 240.1 23.0 190 186-400 184-390 (1153)
4 PRK00411 cdc6 cell division co 99.2 9.4E-10 2E-14 109.4 18.4 175 186-371 30-220 (394)
5 PF05729 NACHT: NACHT domain 99.2 4.2E-10 9.1E-15 97.4 12.5 145 210-372 1-164 (166)
6 TIGR02928 orc1/cdc6 family rep 99.1 6.2E-09 1.3E-13 102.4 17.7 175 186-372 15-213 (365)
7 TIGR03015 pepcterm_ATPase puta 99.0 3E-08 6.5E-13 93.2 20.5 178 208-400 42-233 (269)
8 PF01637 Arch_ATPase: Archaeal 98.9 6.6E-09 1.4E-13 95.0 10.7 193 188-399 1-228 (234)
9 PRK06893 DNA replication initi 98.9 1.7E-08 3.7E-13 92.7 12.4 142 209-398 39-196 (229)
10 PRK04841 transcriptional regul 98.9 2E-08 4.2E-13 110.4 15.2 190 186-399 14-219 (903)
11 PRK00080 ruvB Holliday junctio 98.8 3.4E-08 7.3E-13 95.8 12.2 188 186-400 25-217 (328)
12 TIGR00635 ruvB Holliday juncti 98.8 3.3E-08 7.1E-13 94.8 11.6 187 186-400 4-196 (305)
13 COG2256 MGS1 ATPase related to 98.8 2.6E-08 5.5E-13 95.5 9.6 142 186-371 30-176 (436)
14 PRK13342 recombination factor 98.8 9.3E-08 2E-12 95.6 12.9 168 186-399 12-190 (413)
15 PF13191 AAA_16: AAA ATPase do 98.7 2.2E-08 4.7E-13 88.4 6.6 46 187-232 1-47 (185)
16 PF13401 AAA_22: AAA domain; P 98.7 5.6E-08 1.2E-12 80.8 7.5 115 208-330 3-125 (131)
17 PF13173 AAA_14: AAA domain 98.7 9.8E-08 2.1E-12 79.5 8.1 121 209-362 2-126 (128)
18 PTZ00112 origin recognition co 98.6 1.2E-06 2.5E-11 92.1 17.4 199 186-398 755-974 (1164)
19 PTZ00202 tuzin; Provisional 98.6 2.1E-06 4.6E-11 84.1 17.9 160 186-369 262-432 (550)
20 cd00009 AAA The AAA+ (ATPases 98.6 3.6E-07 7.7E-12 76.6 11.1 124 189-332 1-131 (151)
21 PRK12402 replication factor C 98.6 7.5E-07 1.6E-11 86.5 14.3 170 186-372 15-198 (337)
22 PRK07003 DNA polymerase III su 98.6 1.1E-06 2.4E-11 91.5 15.6 191 186-399 16-214 (830)
23 TIGR02903 spore_lon_C ATP-depe 98.6 2.2E-05 4.7E-10 82.3 24.6 176 186-372 154-367 (615)
24 COG2909 MalT ATP-dependent tra 98.6 1.1E-06 2.3E-11 91.6 14.4 170 195-372 24-208 (894)
25 PRK14961 DNA polymerase III su 98.6 2.4E-06 5.3E-11 83.9 16.4 170 186-372 16-192 (363)
26 cd01128 rho_factor Transcripti 98.5 2.3E-07 5.1E-12 85.9 7.8 93 210-303 17-114 (249)
27 PRK08727 hypothetical protein; 98.5 1.5E-06 3.3E-11 80.0 13.1 144 186-372 19-176 (233)
28 PRK13341 recombination factor 98.5 1.2E-06 2.5E-11 92.8 13.5 144 186-372 28-182 (725)
29 PRK06645 DNA polymerase III su 98.5 3.1E-06 6.7E-11 86.1 16.1 194 186-399 21-223 (507)
30 PRK14960 DNA polymerase III su 98.5 2.1E-06 4.5E-11 88.6 14.7 170 186-372 15-191 (702)
31 PRK14963 DNA polymerase III su 98.5 2.4E-06 5.1E-11 87.1 15.1 190 186-399 14-211 (504)
32 PRK00440 rfc replication facto 98.5 3.4E-06 7.5E-11 81.2 15.6 176 186-399 17-197 (319)
33 PRK05564 DNA polymerase III su 98.5 5.3E-06 1.2E-10 79.9 16.7 155 186-371 4-165 (313)
34 PLN03025 replication factor C 98.5 2.7E-06 6E-11 82.1 14.2 178 186-399 13-194 (319)
35 PRK04195 replication factor C 98.5 2.5E-06 5.4E-11 87.1 14.0 173 186-399 14-196 (482)
36 PRK14957 DNA polymerase III su 98.5 3.1E-06 6.6E-11 86.7 14.5 153 186-371 16-191 (546)
37 COG1474 CDC6 Cdc6-related prot 98.4 9.4E-06 2E-10 79.5 17.0 172 186-372 17-204 (366)
38 PRK12323 DNA polymerase III su 98.4 6.6E-06 1.4E-10 84.7 15.5 175 186-372 16-197 (700)
39 PRK14949 DNA polymerase III su 98.4 4.7E-06 1E-10 88.5 14.6 170 186-372 16-192 (944)
40 PRK14955 DNA polymerase III su 98.4 3.7E-06 8E-11 83.7 13.2 174 186-371 16-199 (397)
41 PRK14962 DNA polymerase III su 98.4 7.1E-06 1.5E-10 83.0 15.3 168 186-372 14-190 (472)
42 PRK09376 rho transcription ter 98.4 4.2E-07 9.1E-12 88.2 6.0 104 197-303 158-267 (416)
43 KOG2028 ATPase related to the 98.4 1.7E-06 3.7E-11 82.0 9.6 130 207-370 160-293 (554)
44 TIGR03420 DnaA_homol_Hda DnaA 98.4 5E-06 1.1E-10 76.0 12.2 143 186-371 15-172 (226)
45 PRK14951 DNA polymerase III su 98.4 9.2E-06 2E-10 84.3 15.4 173 186-372 16-197 (618)
46 TIGR01242 26Sp45 26S proteasom 98.4 5.8E-06 1.3E-10 81.4 13.2 155 186-373 122-308 (364)
47 PRK08084 DNA replication initi 98.3 6.5E-06 1.4E-10 75.9 12.4 122 209-372 45-181 (235)
48 PRK05896 DNA polymerase III su 98.3 7.7E-06 1.7E-10 84.1 13.5 170 186-372 16-192 (605)
49 PRK14964 DNA polymerase III su 98.3 1E-05 2.2E-10 81.8 14.1 154 186-372 13-189 (491)
50 PRK14954 DNA polymerase III su 98.3 1.4E-05 3E-10 83.3 15.4 197 186-399 16-222 (620)
51 TIGR02397 dnaX_nterm DNA polym 98.3 2.8E-05 6.1E-10 76.1 16.9 154 186-372 14-190 (355)
52 PRK08691 DNA polymerase III su 98.3 1.4E-05 3E-10 83.2 14.5 170 186-372 16-192 (709)
53 TIGR00678 holB DNA polymerase 98.3 3.9E-05 8.4E-10 68.2 15.7 88 291-400 95-186 (188)
54 PRK07940 DNA polymerase III su 98.3 2.2E-05 4.8E-10 77.6 15.3 169 186-371 5-189 (394)
55 PRK14956 DNA polymerase III su 98.2 2E-05 4.4E-10 79.0 14.2 191 186-399 18-216 (484)
56 PRK07994 DNA polymerase III su 98.2 1.8E-05 4E-10 82.3 14.4 169 186-371 16-191 (647)
57 PRK14969 DNA polymerase III su 98.2 3.2E-05 6.9E-10 79.6 15.9 169 186-371 16-191 (527)
58 PRK14970 DNA polymerase III su 98.2 2.2E-05 4.9E-10 77.3 14.3 156 186-372 17-181 (367)
59 PRK14958 DNA polymerase III su 98.2 2.8E-05 6.1E-10 79.5 15.4 169 186-371 16-191 (509)
60 TIGR00767 rho transcription te 98.2 4.5E-06 9.8E-11 81.5 8.2 93 210-303 169-266 (415)
61 PRK09111 DNA polymerase III su 98.2 3E-05 6.4E-10 80.6 14.7 194 186-399 24-227 (598)
62 PF05496 RuvB_N: Holliday junc 98.2 1.5E-05 3.4E-10 71.7 10.9 166 186-398 24-214 (233)
63 PRK07764 DNA polymerase III su 98.2 3.2E-05 6.9E-10 83.1 15.3 167 186-371 15-192 (824)
64 CHL00181 cbbX CbbX; Provisiona 98.2 7.2E-05 1.6E-09 71.0 16.0 159 186-372 23-210 (287)
65 PRK14950 DNA polymerase III su 98.2 2.6E-05 5.6E-10 81.4 14.1 192 186-399 16-215 (585)
66 PRK14952 DNA polymerase III su 98.2 5.2E-05 1.1E-09 78.5 15.4 170 186-372 13-191 (584)
67 PRK09087 hypothetical protein; 98.1 2.3E-05 5.1E-10 71.7 11.4 111 209-372 44-167 (226)
68 PRK14971 DNA polymerase III su 98.1 6E-05 1.3E-09 78.8 15.5 175 186-399 17-216 (614)
69 PHA02544 44 clamp loader, smal 98.1 2.6E-05 5.7E-10 75.1 11.9 147 186-368 21-170 (316)
70 TIGR02880 cbbX_cfxQ probable R 98.1 7E-05 1.5E-09 71.1 14.2 158 187-372 23-209 (284)
71 PF00308 Bac_DnaA: Bacterial d 98.1 2.2E-05 4.7E-10 71.6 10.2 155 186-372 8-180 (219)
72 PRK03992 proteasome-activating 98.1 6E-05 1.3E-09 74.8 13.9 156 186-374 131-318 (389)
73 PF05621 TniB: Bacterial TniB 98.1 0.00015 3.3E-09 68.2 15.2 195 193-399 44-255 (302)
74 PRK07471 DNA polymerase III su 98.1 0.00015 3.2E-09 71.2 15.9 173 186-372 19-214 (365)
75 PRK14959 DNA polymerase III su 98.1 8.3E-05 1.8E-09 77.0 14.6 170 186-372 16-192 (624)
76 PRK08903 DnaA regulatory inact 98.0 9.9E-05 2.1E-09 67.6 13.4 143 186-371 18-170 (227)
77 PRK05642 DNA replication initi 98.0 8.6E-05 1.9E-09 68.4 12.8 121 210-372 46-180 (234)
78 PRK14953 DNA polymerase III su 98.0 0.00024 5.1E-09 72.4 16.8 154 186-371 16-191 (486)
79 TIGR02881 spore_V_K stage V sp 98.0 7.1E-05 1.5E-09 70.2 11.9 159 186-372 6-192 (261)
80 PRK06305 DNA polymerase III su 98.0 0.0002 4.3E-09 72.3 15.8 153 186-372 17-194 (451)
81 PRK08451 DNA polymerase III su 98.0 0.00028 6E-09 72.2 16.8 191 186-399 14-212 (535)
82 KOG2543 Origin recognition com 98.0 0.00015 3.3E-09 69.5 13.8 113 186-303 6-126 (438)
83 TIGR00362 DnaA chromosomal rep 98.0 0.00013 2.8E-09 72.9 13.8 135 209-373 136-283 (405)
84 PRK14965 DNA polymerase III su 98.0 0.00015 3.2E-09 75.6 14.5 169 186-371 16-191 (576)
85 PRK00149 dnaA chromosomal repl 98.0 0.00014 3.1E-09 73.6 14.1 132 208-372 147-294 (450)
86 PF00004 AAA: ATPase family as 97.9 3.8E-05 8.3E-10 63.5 7.8 21 212-232 1-21 (132)
87 PRK07133 DNA polymerase III su 97.9 0.00027 5.9E-09 74.3 15.7 164 186-371 18-190 (725)
88 PRK09112 DNA polymerase III su 97.9 0.00026 5.7E-09 69.1 14.7 172 186-371 23-213 (351)
89 PRK11331 5-methylcytosine-spec 97.9 4.4E-05 9.5E-10 75.8 9.3 107 186-303 175-283 (459)
90 PRK14088 dnaA chromosomal repl 97.9 0.00017 3.6E-09 72.7 13.6 135 209-372 130-277 (440)
91 PRK14087 dnaA chromosomal repl 97.9 0.00019 4.1E-09 72.5 13.9 155 209-398 141-312 (450)
92 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.6E-09 79.4 13.0 44 186-231 187-230 (852)
93 PRK14948 DNA polymerase III su 97.9 0.0004 8.7E-09 72.7 16.2 172 186-372 16-194 (620)
94 smart00382 AAA ATPases associa 97.9 8.8E-05 1.9E-09 61.2 9.4 86 210-303 3-89 (148)
95 PRK08116 hypothetical protein; 97.9 9.2E-05 2E-09 69.6 10.3 103 210-331 115-221 (268)
96 TIGR02639 ClpA ATP-dependent C 97.8 0.00016 3.4E-09 77.6 12.5 156 186-371 182-358 (731)
97 PRK14086 dnaA chromosomal repl 97.8 0.00037 8E-09 72.0 14.3 130 210-372 315-460 (617)
98 TIGR03689 pup_AAA proteasome A 97.8 0.00023 5E-09 72.4 12.7 163 186-372 182-379 (512)
99 PRK06620 hypothetical protein; 97.8 0.0002 4.3E-09 65.1 11.0 128 210-398 45-182 (214)
100 PRK08181 transposase; Validate 97.8 6E-05 1.3E-09 70.7 7.3 100 210-331 107-209 (269)
101 PRK05563 DNA polymerase III su 97.8 0.00081 1.8E-08 69.8 16.3 170 186-372 16-192 (559)
102 PRK06647 DNA polymerase III su 97.8 0.00084 1.8E-08 69.5 16.3 169 186-371 16-191 (563)
103 PTZ00454 26S protease regulato 97.8 0.00053 1.2E-08 68.1 13.9 155 186-372 145-330 (398)
104 PRK12422 chromosomal replicati 97.7 0.00032 6.9E-09 70.7 12.3 134 209-372 141-285 (445)
105 PRK10787 DNA-binding ATP-depen 97.7 0.00062 1.4E-08 73.2 14.3 46 186-231 322-371 (784)
106 CHL00176 ftsH cell division pr 97.7 0.00084 1.8E-08 70.5 14.8 156 186-373 183-368 (638)
107 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00031 6.6E-09 76.6 11.5 44 186-231 173-216 (852)
108 CHL00095 clpC Clp protease ATP 97.7 0.00028 6.1E-09 76.7 11.0 45 186-232 179-223 (821)
109 TIGR02639 ClpA ATP-dependent C 97.6 0.00054 1.2E-08 73.6 12.5 118 186-318 454-580 (731)
110 TIGR00602 rad24 checkpoint pro 97.6 0.00057 1.2E-08 71.4 12.1 46 186-231 84-132 (637)
111 PRK10865 protein disaggregatio 97.6 0.00051 1.1E-08 74.8 12.2 44 186-231 178-221 (857)
112 KOG2004 Mitochondrial ATP-depe 97.6 0.00062 1.3E-08 70.1 11.9 102 186-303 411-516 (906)
113 PF04665 Pox_A32: Poxvirus A32 97.6 0.0003 6.4E-09 64.6 8.6 36 210-247 14-49 (241)
114 PRK06526 transposase; Provisio 97.6 0.00012 2.7E-09 68.1 6.2 99 210-331 99-201 (254)
115 PRK08118 topology modulation p 97.6 3.2E-05 7E-10 67.4 2.1 34 211-244 3-37 (167)
116 COG3899 Predicted ATPase [Gene 97.6 0.0013 2.9E-08 71.4 14.8 45 187-231 1-46 (849)
117 TIGR02640 gas_vesic_GvpN gas v 97.6 0.002 4.4E-08 60.4 14.3 154 195-372 11-199 (262)
118 KOG2227 Pre-initiation complex 97.6 0.0016 3.4E-08 64.3 13.4 194 186-393 150-359 (529)
119 TIGR01241 FtsH_fam ATP-depende 97.6 0.0026 5.6E-08 65.3 15.9 156 186-373 55-240 (495)
120 PRK12377 putative replication 97.5 0.00035 7.5E-09 64.8 8.5 101 209-330 101-205 (248)
121 PF05673 DUF815: Protein of un 97.5 0.00064 1.4E-08 62.2 10.0 119 186-333 27-153 (249)
122 TIGR00763 lon ATP-dependent pr 97.5 0.0025 5.5E-08 68.9 16.3 46 186-231 320-369 (775)
123 TIGR01243 CDC48 AAA family ATP 97.5 0.0023 5E-08 68.9 15.9 156 186-373 453-637 (733)
124 PRK08939 primosomal protein Dn 97.5 0.00032 7E-09 67.1 8.4 119 190-330 135-260 (306)
125 PRK12608 transcription termina 97.5 0.00044 9.5E-09 67.3 9.1 106 194-302 119-230 (380)
126 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00019 4E-09 78.0 7.2 133 186-330 566-718 (852)
127 PRK10865 protein disaggregatio 97.5 0.0011 2.4E-08 72.3 13.1 133 186-330 568-720 (857)
128 KOG0989 Replication factor C, 97.5 0.0012 2.6E-08 61.8 11.0 183 186-400 36-225 (346)
129 PRK11034 clpA ATP-dependent Cl 97.4 0.00097 2.1E-08 71.3 11.4 158 186-371 186-362 (758)
130 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0031 6.7E-08 68.9 15.6 133 186-330 565-717 (852)
131 PRK09183 transposase/IS protei 97.4 0.00045 9.7E-09 64.7 7.8 22 210-231 103-124 (259)
132 PTZ00361 26 proteosome regulat 97.4 0.0014 3E-08 65.7 11.7 156 186-373 183-369 (438)
133 COG0470 HolB ATPase involved i 97.4 0.0015 3.3E-08 62.8 11.8 125 187-331 2-149 (325)
134 cd03214 ABC_Iron-Siderophores_ 97.4 0.0012 2.7E-08 58.1 9.9 124 209-336 25-163 (180)
135 PRK07952 DNA replication prote 97.4 0.00085 1.8E-08 62.1 8.9 116 195-330 85-204 (244)
136 PRK07399 DNA polymerase III su 97.4 0.0023 4.9E-08 61.6 12.1 171 186-372 4-196 (314)
137 PRK10536 hypothetical protein; 97.4 0.002 4.4E-08 59.5 11.0 55 186-244 55-109 (262)
138 PF01695 IstB_IS21: IstB-like 97.4 9.2E-05 2E-09 65.2 2.1 99 210-331 48-150 (178)
139 PRK05707 DNA polymerase III su 97.4 0.004 8.6E-08 60.3 13.5 72 291-371 105-178 (328)
140 COG3903 Predicted ATPase [Gene 97.3 0.00018 4E-09 69.8 4.1 140 208-371 13-155 (414)
141 PRK09361 radB DNA repair and r 97.3 0.0011 2.3E-08 60.6 8.9 101 198-302 12-117 (225)
142 cd01131 PilT Pilus retraction 97.3 0.00058 1.3E-08 61.3 6.8 113 210-337 2-115 (198)
143 cd03238 ABC_UvrA The excision 97.3 0.0021 4.5E-08 56.5 10.0 115 210-335 22-153 (176)
144 COG1373 Predicted ATPase (AAA+ 97.3 0.0039 8.4E-08 62.1 12.9 117 211-365 39-161 (398)
145 TIGR02237 recomb_radB DNA repa 97.3 0.0012 2.6E-08 59.5 8.6 92 207-302 10-107 (209)
146 cd03247 ABCC_cytochrome_bd The 97.3 0.0016 3.4E-08 57.3 9.0 120 210-335 29-161 (178)
147 PF14532 Sigma54_activ_2: Sigm 97.3 0.00037 8.1E-09 58.6 4.8 107 189-331 1-110 (138)
148 COG0593 DnaA ATPase involved i 97.3 0.0043 9.3E-08 61.2 12.8 133 208-372 112-258 (408)
149 PHA00729 NTP-binding motif con 97.3 0.0022 4.9E-08 58.2 9.9 32 198-231 8-39 (226)
150 PF13177 DNA_pol3_delta2: DNA 97.3 0.0041 8.8E-08 53.9 11.3 119 192-332 3-143 (162)
151 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0022 4.9E-08 58.8 10.3 95 207-302 17-125 (235)
152 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0011 2.4E-08 67.2 8.4 95 185-303 189-293 (802)
153 PRK06921 hypothetical protein; 97.2 0.001 2.3E-08 62.4 7.6 37 209-247 117-154 (266)
154 cd01120 RecA-like_NTPases RecA 97.2 0.0023 5E-08 54.5 9.2 40 211-252 1-40 (165)
155 PRK08058 DNA polymerase III su 97.2 0.01 2.2E-07 57.6 14.4 166 187-370 6-181 (329)
156 CHL00095 clpC Clp protease ATP 97.2 0.0015 3.2E-08 71.2 9.3 132 186-330 509-661 (821)
157 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0093 2E-07 60.8 13.9 154 209-398 545-717 (802)
158 COG1484 DnaC DNA replication p 97.2 0.00094 2E-08 62.3 6.6 75 208-303 104-178 (254)
159 TIGR01243 CDC48 AAA family ATP 97.1 0.0043 9.3E-08 66.8 12.2 46 186-231 178-234 (733)
160 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0069 1.5E-07 52.6 11.3 115 210-335 28-152 (166)
161 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0014 3.1E-08 61.3 7.3 92 210-303 70-174 (274)
162 PRK06835 DNA replication prote 97.1 0.0017 3.7E-08 62.7 8.2 101 210-330 184-288 (329)
163 cd01394 radB RadB. The archaea 97.1 0.0031 6.6E-08 57.3 9.3 100 198-302 8-113 (218)
164 PF13207 AAA_17: AAA domain; P 97.1 0.00038 8.2E-09 56.8 3.0 21 211-231 1-21 (121)
165 KOG0741 AAA+-type ATPase [Post 97.1 0.015 3.2E-07 58.4 14.3 134 206-371 535-686 (744)
166 PF08423 Rad51: Rad51; InterP 97.1 0.0017 3.6E-08 60.7 7.5 93 209-302 38-143 (256)
167 cd01393 recA_like RecA is a b 97.1 0.0054 1.2E-07 55.9 10.8 101 200-303 10-125 (226)
168 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00057 1.2E-08 66.2 4.5 47 186-232 51-101 (361)
169 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0061 1.3E-07 51.6 10.4 104 210-336 27-132 (144)
170 COG0542 clpA ATP-binding subun 97.1 0.0016 3.4E-08 68.9 7.8 133 186-330 491-643 (786)
171 PRK05541 adenylylsulfate kinas 97.1 0.0012 2.6E-08 57.9 6.0 36 208-245 6-41 (176)
172 PRK11034 clpA ATP-dependent Cl 97.1 0.0013 2.9E-08 70.3 7.4 116 186-317 458-583 (758)
173 PRK07261 topology modulation p 97.0 0.0012 2.7E-08 57.7 5.8 22 211-232 2-23 (171)
174 KOG0730 AAA+-type ATPase [Post 97.0 0.0084 1.8E-07 61.6 12.3 162 186-379 434-623 (693)
175 TIGR02238 recomb_DMC1 meiotic 97.0 0.0049 1.1E-07 59.2 10.3 104 198-302 85-201 (313)
176 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0015 3.3E-08 59.2 6.4 123 209-337 29-160 (213)
177 cd03228 ABCC_MRP_Like The MRP 97.0 0.0033 7.1E-08 54.9 8.2 120 210-336 29-160 (171)
178 PRK04296 thymidine kinase; Pro 97.0 0.0016 3.4E-08 58.1 6.2 113 210-331 3-116 (190)
179 cd03216 ABC_Carb_Monos_I This 97.0 0.0037 7.9E-08 54.2 8.4 116 210-336 27-147 (163)
180 PLN03187 meiotic recombination 97.0 0.0046 9.9E-08 60.1 9.7 101 201-302 118-231 (344)
181 PRK04301 radA DNA repair and r 97.0 0.0067 1.4E-07 58.6 10.8 105 198-303 91-209 (317)
182 PRK06696 uridine kinase; Valid 97.0 0.00091 2E-08 61.1 4.5 41 191-231 3-44 (223)
183 PF13671 AAA_33: AAA domain; P 97.0 0.00077 1.7E-08 56.6 3.7 21 211-231 1-21 (143)
184 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0038 8.2E-08 54.9 8.2 21 211-231 1-21 (183)
185 PF07728 AAA_5: AAA domain (dy 96.9 0.00074 1.6E-08 56.6 3.5 87 212-316 2-90 (139)
186 PF02562 PhoH: PhoH-like prote 96.9 0.0022 4.8E-08 57.5 6.6 128 190-329 4-154 (205)
187 CHL00195 ycf46 Ycf46; Provisio 96.9 0.013 2.8E-07 59.8 12.9 156 186-373 228-407 (489)
188 PRK11608 pspF phage shock prot 96.9 0.0058 1.2E-07 59.2 10.0 46 186-231 6-51 (326)
189 COG2607 Predicted ATPase (AAA+ 96.9 0.0073 1.6E-07 54.8 9.7 117 186-331 60-183 (287)
190 cd03222 ABC_RNaseL_inhibitor T 96.9 0.008 1.7E-07 52.9 9.9 103 210-337 26-138 (177)
191 TIGR02012 tigrfam_recA protein 96.9 0.0036 7.7E-08 60.1 8.0 92 205-303 51-144 (321)
192 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0043 9.4E-08 54.2 7.8 122 210-337 27-161 (173)
193 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0079 1.7E-07 55.5 9.7 127 210-336 31-204 (254)
194 cd03246 ABCC_Protease_Secretio 96.9 0.0062 1.3E-07 53.2 8.7 122 210-335 29-160 (173)
195 TIGR01817 nifA Nif-specific re 96.8 0.0046 9.9E-08 64.1 9.1 47 186-232 196-242 (534)
196 PRK09354 recA recombinase A; P 96.8 0.0045 9.8E-08 60.0 8.4 99 198-303 48-149 (349)
197 cd03235 ABC_Metallic_Cations A 96.8 0.012 2.6E-07 53.2 10.8 53 285-337 143-198 (213)
198 PRK15429 formate hydrogenlyase 96.8 0.004 8.7E-08 66.5 8.9 134 186-331 376-521 (686)
199 PRK09270 nucleoside triphospha 96.8 0.012 2.6E-07 54.0 10.9 26 206-231 30-55 (229)
200 TIGR02974 phageshock_pspF psp 96.8 0.0068 1.5E-07 58.8 9.6 44 188-231 1-44 (329)
201 TIGR02239 recomb_RAD51 DNA rep 96.8 0.008 1.7E-07 57.9 10.0 105 197-302 84-201 (316)
202 PRK13543 cytochrome c biogenes 96.8 0.017 3.6E-07 52.3 11.6 55 283-337 146-203 (214)
203 PRK11889 flhF flagellar biosyn 96.8 0.018 3.9E-07 56.6 12.2 24 208-231 240-263 (436)
204 cd00983 recA RecA is a bacter 96.8 0.0045 9.7E-08 59.5 7.9 91 205-302 51-143 (325)
205 COG2812 DnaX DNA polymerase II 96.8 0.01 2.2E-07 60.4 10.6 170 186-372 16-192 (515)
206 PF00448 SRP54: SRP54-type pro 96.8 0.0035 7.6E-08 56.1 6.6 57 209-267 1-58 (196)
207 COG1136 SalX ABC-type antimicr 96.8 0.015 3.4E-07 52.8 10.7 83 255-337 120-209 (226)
208 PRK06067 flagellar accessory p 96.8 0.0051 1.1E-07 56.5 7.9 100 198-302 14-130 (234)
209 PF00158 Sigma54_activat: Sigm 96.8 0.0012 2.6E-08 57.6 3.4 44 188-231 1-44 (168)
210 PRK07667 uridine kinase; Provi 96.8 0.0021 4.6E-08 57.3 5.1 37 195-231 3-39 (193)
211 cd03269 ABC_putative_ATPase Th 96.7 0.013 2.8E-07 52.8 10.3 53 285-337 139-194 (210)
212 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.014 2.9E-07 54.3 10.6 128 210-337 26-182 (246)
213 TIGR02902 spore_lonB ATP-depen 96.7 0.0083 1.8E-07 62.0 9.8 44 186-231 65-108 (531)
214 PRK15455 PrkA family serine pr 96.7 0.0016 3.5E-08 66.5 4.4 47 185-231 75-125 (644)
215 KOG0739 AAA+-type ATPase [Post 96.7 0.035 7.6E-07 52.0 12.7 170 186-392 133-331 (439)
216 TIGR02858 spore_III_AA stage I 96.7 0.04 8.7E-07 51.8 13.5 134 194-336 97-234 (270)
217 cd03229 ABC_Class3 This class 96.7 0.006 1.3E-07 53.6 7.6 120 210-336 27-166 (178)
218 COG1618 Predicted nucleotide k 96.7 0.0013 2.7E-08 56.0 3.0 31 209-241 5-36 (179)
219 PF12061 DUF3542: Protein of u 96.7 0.0058 1.3E-07 57.2 7.5 102 44-158 295-402 (402)
220 PRK13695 putative NTPase; Prov 96.7 0.0017 3.6E-08 56.9 3.9 22 211-232 2-23 (174)
221 PRK09544 znuC high-affinity zi 96.7 0.013 2.8E-07 54.6 10.0 127 210-336 31-186 (251)
222 TIGR03771 anch_rpt_ABC anchore 96.7 0.013 2.9E-07 53.4 9.9 54 283-336 122-178 (223)
223 cd03225 ABC_cobalt_CbiO_domain 96.7 0.02 4.3E-07 51.6 10.9 54 284-337 144-200 (211)
224 COG0468 RecA RecA/RadA recombi 96.7 0.012 2.7E-07 55.2 9.7 97 204-303 55-152 (279)
225 PTZ00035 Rad51 protein; Provis 96.7 0.015 3.2E-07 56.6 10.6 106 197-303 106-224 (337)
226 TIGR02236 recomb_radA DNA repa 96.7 0.013 2.7E-07 56.4 10.1 105 198-303 84-203 (310)
227 PF03215 Rad17: Rad17 cell cyc 96.7 0.012 2.7E-07 60.3 10.5 57 186-246 19-78 (519)
228 PRK15056 manganese/iron transp 96.7 0.013 2.9E-07 55.1 10.0 54 284-337 152-208 (272)
229 PRK08769 DNA polymerase III su 96.6 0.092 2E-06 50.6 15.7 71 291-370 112-184 (319)
230 PRK00771 signal recognition pa 96.6 0.024 5.2E-07 56.9 12.1 24 208-231 94-117 (437)
231 COG2884 FtsE Predicted ATPase 96.6 0.018 4E-07 50.5 9.6 124 210-337 29-203 (223)
232 COG2255 RuvB Holliday junction 96.6 0.0018 4E-08 60.0 3.7 46 186-231 26-74 (332)
233 cd03258 ABC_MetN_methionine_tr 96.6 0.016 3.5E-07 53.1 10.0 55 283-337 149-207 (233)
234 TIGR03740 galliderm_ABC gallid 96.6 0.019 4E-07 52.3 10.4 54 284-337 134-190 (223)
235 COG0466 Lon ATP-dependent Lon 96.6 0.014 2.9E-07 60.7 10.2 102 186-303 323-428 (782)
236 cd03263 ABC_subfamily_A The AB 96.6 0.022 4.7E-07 51.7 10.8 54 284-337 143-198 (220)
237 cd03264 ABC_drug_resistance_li 96.6 0.0063 1.4E-07 54.9 7.1 54 283-336 139-194 (211)
238 PF00485 PRK: Phosphoribulokin 96.6 0.0095 2.1E-07 53.1 8.2 81 211-295 1-86 (194)
239 COG4608 AppF ABC-type oligopep 96.6 0.01 2.2E-07 54.9 8.5 126 209-337 39-176 (268)
240 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.024 5.2E-07 52.1 11.1 52 284-335 142-197 (236)
241 TIGR01360 aden_kin_iso1 adenyl 96.6 0.021 4.6E-07 50.2 10.4 24 208-231 2-25 (188)
242 COG0396 sufC Cysteine desulfur 96.6 0.008 1.7E-07 54.2 7.4 64 279-345 149-215 (251)
243 PLN03186 DNA repair protein RA 96.6 0.018 4E-07 55.9 10.6 104 198-302 112-228 (342)
244 PRK06762 hypothetical protein; 96.6 0.0087 1.9E-07 51.8 7.6 22 210-231 3-24 (166)
245 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0075 1.6E-07 51.7 7.1 116 210-337 26-146 (157)
246 cd03217 ABC_FeS_Assembly ABC-t 96.6 0.011 2.5E-07 52.9 8.5 55 282-336 112-169 (200)
247 cd03259 ABC_Carb_Solutes_like 96.6 0.021 4.6E-07 51.5 10.4 54 283-336 139-196 (213)
248 cd03298 ABC_ThiQ_thiamine_tran 96.6 0.008 1.7E-07 54.2 7.6 54 284-337 138-195 (211)
249 TIGR00064 ftsY signal recognit 96.6 0.025 5.4E-07 53.3 11.1 39 207-247 70-108 (272)
250 PRK00625 shikimate kinase; Pro 96.6 0.016 3.4E-07 50.8 9.1 21 211-231 2-22 (173)
251 PRK14974 cell division protein 96.6 0.021 4.6E-07 55.3 10.8 55 208-266 139-196 (336)
252 COG1222 RPT1 ATP-dependent 26S 96.6 0.095 2.1E-06 50.4 14.7 159 186-376 151-340 (406)
253 TIGR00960 3a0501s02 Type II (G 96.6 0.036 7.8E-07 50.2 11.8 55 283-337 147-204 (216)
254 cd03268 ABC_BcrA_bacitracin_re 96.6 0.017 3.6E-07 52.0 9.5 54 284-337 136-192 (208)
255 TIGR01166 cbiO cobalt transpor 96.6 0.016 3.4E-07 51.4 9.2 49 284-332 137-188 (190)
256 TIGR03499 FlhF flagellar biosy 96.6 0.0099 2.1E-07 56.4 8.3 87 208-300 193-280 (282)
257 PF07693 KAP_NTPase: KAP famil 96.6 0.031 6.6E-07 53.9 12.0 40 193-232 3-43 (325)
258 KOG1514 Origin recognition com 96.5 0.077 1.7E-06 55.1 15.0 133 186-326 396-544 (767)
259 PRK11248 tauB taurine transpor 96.5 0.029 6.2E-07 52.4 11.3 54 284-337 138-195 (255)
260 TIGR00959 ffh signal recogniti 96.5 0.029 6.4E-07 56.2 11.9 24 208-231 98-121 (428)
261 cd03115 SRP The signal recogni 96.5 0.017 3.7E-07 50.3 9.2 21 211-231 2-22 (173)
262 PF13604 AAA_30: AAA domain; P 96.5 0.0022 4.7E-08 57.4 3.5 115 195-327 6-127 (196)
263 TIGR03608 L_ocin_972_ABC putat 96.5 0.022 4.7E-07 51.1 10.2 53 283-335 143-198 (206)
264 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.0032 7E-08 56.7 4.6 120 209-337 29-157 (204)
265 cd03226 ABC_cobalt_CbiO_domain 96.5 0.032 6.9E-07 50.1 11.1 54 284-337 136-192 (205)
266 PRK05022 anaerobic nitric oxid 96.5 0.0062 1.4E-07 62.7 7.3 134 186-331 187-332 (509)
267 PRK13540 cytochrome c biogenes 96.5 0.026 5.7E-07 50.5 10.4 56 282-337 135-193 (200)
268 cd03215 ABC_Carb_Monos_II This 96.5 0.022 4.8E-07 50.1 9.8 53 284-336 114-169 (182)
269 KOG0735 AAA+-type ATPase [Post 96.5 0.032 7E-07 57.9 11.9 73 209-303 431-505 (952)
270 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.027 5.8E-07 51.2 10.5 54 283-336 140-197 (220)
271 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.014 3E-07 50.2 8.0 121 210-332 3-139 (159)
272 PRK12723 flagellar biosynthesi 96.5 0.039 8.4E-07 54.6 12.2 90 208-303 173-265 (388)
273 PRK08699 DNA polymerase III su 96.5 0.03 6.5E-07 54.1 11.2 71 291-370 112-184 (325)
274 PF10443 RNA12: RNA12 protein; 96.5 0.05 1.1E-06 53.8 12.7 41 191-233 1-42 (431)
275 PRK13538 cytochrome c biogenes 96.4 0.023 5E-07 51.0 9.8 55 283-337 138-195 (204)
276 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.4 0.039 8.4E-07 50.4 11.3 54 284-337 152-208 (224)
277 TIGR02324 CP_lyasePhnL phospho 96.4 0.056 1.2E-06 49.2 12.4 54 284-337 159-215 (224)
278 TIGR01189 ccmA heme ABC export 96.4 0.026 5.6E-07 50.4 9.9 24 209-232 26-49 (198)
279 cd01121 Sms Sms (bacterial rad 96.4 0.02 4.3E-07 56.4 9.9 99 196-302 69-168 (372)
280 PRK14527 adenylate kinase; Pro 96.4 0.0076 1.6E-07 53.6 6.4 24 208-231 5-28 (191)
281 cd03265 ABC_DrrA DrrA is the A 96.4 0.033 7.1E-07 50.6 10.7 54 284-337 141-198 (220)
282 PRK10733 hflB ATP-dependent me 96.4 0.037 8.1E-07 58.6 12.5 157 186-374 152-338 (644)
283 PLN00020 ribulose bisphosphate 96.4 0.0067 1.5E-07 58.9 6.2 25 207-231 146-170 (413)
284 TIGR01188 drrA daunorubicin re 96.4 0.0058 1.3E-07 58.5 5.9 55 283-337 133-190 (302)
285 COG1124 DppF ABC-type dipeptid 96.4 0.025 5.4E-07 51.5 9.5 54 284-337 151-208 (252)
286 KOG0744 AAA+-type ATPase [Post 96.4 0.009 1.9E-07 56.5 6.8 81 209-303 177-261 (423)
287 cd03266 ABC_NatA_sodium_export 96.4 0.029 6.4E-07 50.8 10.3 22 210-231 32-53 (218)
288 cd03301 ABC_MalK_N The N-termi 96.4 0.025 5.5E-07 51.0 9.8 53 284-336 140-196 (213)
289 PRK04132 replication factor C 96.4 0.069 1.5E-06 57.7 14.4 147 217-399 574-725 (846)
290 cd03236 ABC_RNaseL_inhibitor_d 96.4 0.024 5.2E-07 52.9 9.8 53 285-337 150-205 (255)
291 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.02 4.3E-07 51.9 9.1 52 284-335 150-205 (218)
292 cd03261 ABC_Org_Solvent_Resist 96.4 0.031 6.6E-07 51.3 10.4 55 283-337 145-203 (235)
293 TIGR03522 GldA_ABC_ATP gliding 96.4 0.037 8.1E-07 53.0 11.3 54 283-336 142-197 (301)
294 PRK10247 putative ABC transpor 96.4 0.024 5.2E-07 51.7 9.6 54 283-336 146-203 (225)
295 PRK11247 ssuB aliphatic sulfon 96.4 0.03 6.5E-07 52.3 10.4 127 210-336 39-199 (257)
296 PRK13541 cytochrome c biogenes 96.4 0.035 7.5E-07 49.5 10.3 23 210-232 27-49 (195)
297 PRK10771 thiQ thiamine transpo 96.4 0.012 2.6E-07 54.0 7.5 54 284-337 139-196 (232)
298 cd03243 ABC_MutS_homologs The 96.4 0.0051 1.1E-07 55.3 4.9 22 210-231 30-51 (202)
299 TIGR01184 ntrCD nitrate transp 96.4 0.012 2.5E-07 54.0 7.4 54 284-337 124-181 (230)
300 TIGR03411 urea_trans_UrtD urea 96.4 0.053 1.1E-06 50.0 11.8 55 283-337 152-208 (242)
301 PRK06871 DNA polymerase III su 96.4 0.096 2.1E-06 50.6 13.9 72 291-371 106-179 (325)
302 TIGR01277 thiQ thiamine ABC tr 96.4 0.035 7.6E-07 50.1 10.5 53 284-336 138-194 (213)
303 PRK14722 flhF flagellar biosyn 96.4 0.035 7.7E-07 54.5 11.0 58 209-266 137-195 (374)
304 PF13238 AAA_18: AAA domain; P 96.4 0.0026 5.7E-08 52.1 2.8 20 212-231 1-20 (129)
305 cd03231 ABC_CcmA_heme_exporter 96.3 0.038 8.2E-07 49.5 10.5 52 283-334 134-188 (201)
306 cd03278 ABC_SMC_barmotin Barmo 96.3 0.048 1E-06 48.8 11.0 46 291-336 134-181 (197)
307 COG0572 Udk Uridine kinase [Nu 96.3 0.01 2.2E-07 53.5 6.6 25 207-231 6-30 (218)
308 PRK00279 adk adenylate kinase; 96.3 0.0091 2E-07 54.2 6.4 21 211-231 2-22 (215)
309 PF14516 AAA_35: AAA-like doma 96.3 0.13 2.8E-06 50.0 14.8 113 186-303 11-138 (331)
310 PRK11124 artP arginine transpo 96.3 0.042 9E-07 50.7 11.0 53 285-337 152-207 (242)
311 PRK12724 flagellar biosynthesi 96.3 0.023 5.1E-07 56.3 9.6 23 209-231 223-245 (432)
312 cd03244 ABCC_MRP_domain2 Domai 96.3 0.02 4.4E-07 51.9 8.7 52 285-336 150-203 (221)
313 cd03292 ABC_FtsE_transporter F 96.3 0.036 7.8E-07 50.0 10.3 53 284-336 146-201 (214)
314 PRK06964 DNA polymerase III su 96.3 0.084 1.8E-06 51.3 13.3 71 291-370 131-203 (342)
315 TIGR01420 pilT_fam pilus retra 96.3 0.0082 1.8E-07 58.6 6.4 113 209-335 122-234 (343)
316 PRK08233 hypothetical protein; 96.3 0.0033 7.2E-08 55.1 3.3 23 209-231 3-25 (182)
317 PRK13545 tagH teichoic acids e 96.3 0.045 9.8E-07 56.0 11.7 125 210-337 51-209 (549)
318 COG1126 GlnQ ABC-type polar am 96.3 0.051 1.1E-06 48.8 10.6 125 210-337 29-202 (240)
319 PRK13647 cbiO cobalt transport 96.3 0.034 7.4E-07 52.4 10.3 56 281-336 145-203 (274)
320 cd03219 ABC_Mj1267_LivG_branch 96.3 0.045 9.7E-07 50.2 10.9 54 284-337 153-209 (236)
321 PTZ00301 uridine kinase; Provi 96.3 0.0043 9.3E-08 56.1 4.0 23 209-231 3-25 (210)
322 PRK13648 cbiO cobalt transport 96.3 0.032 7E-07 52.4 10.0 23 209-231 35-57 (269)
323 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.047 1E-06 51.4 11.0 53 284-336 170-226 (269)
324 PRK10908 cell division protein 96.3 0.06 1.3E-06 48.9 11.4 54 284-337 147-203 (222)
325 cd03240 ABC_Rad50 The catalyti 96.2 0.028 6E-07 50.6 9.1 53 284-336 131-188 (204)
326 cd03267 ABC_NatA_like Similar 96.2 0.035 7.6E-07 51.1 9.9 54 284-337 163-220 (236)
327 COG0488 Uup ATPase components 96.2 0.024 5.2E-07 58.3 9.5 126 210-337 349-502 (530)
328 KOG2228 Origin recognition com 96.2 0.048 1E-06 52.0 10.6 174 186-371 24-219 (408)
329 PRK10867 signal recognition pa 96.2 0.057 1.2E-06 54.2 11.9 24 208-231 99-122 (433)
330 PRK13539 cytochrome c biogenes 96.2 0.041 9E-07 49.5 10.1 51 284-334 137-190 (207)
331 PRK11264 putative amino-acid A 96.2 0.052 1.1E-06 50.3 11.0 54 284-337 154-210 (250)
332 TIGR03873 F420-0_ABC_ATP propo 96.2 0.056 1.2E-06 50.3 11.3 55 283-337 146-203 (256)
333 PRK07993 DNA polymerase III su 96.2 0.17 3.6E-06 49.2 14.8 155 195-371 11-180 (334)
334 cd03213 ABCG_EPDR ABCG transpo 96.2 0.033 7.1E-07 49.6 9.3 117 209-332 35-172 (194)
335 PRK10584 putative ABC transpor 96.2 0.039 8.5E-07 50.3 10.0 51 285-335 157-211 (228)
336 PRK06090 DNA polymerase III su 96.2 0.18 4E-06 48.5 14.8 71 291-370 107-179 (319)
337 TIGR01818 ntrC nitrogen regula 96.2 0.035 7.5E-07 56.4 10.5 134 186-331 134-279 (463)
338 PRK14250 phosphate ABC transpo 96.2 0.052 1.1E-06 50.1 10.8 53 284-336 141-197 (241)
339 PHA02244 ATPase-like protein 96.2 0.025 5.5E-07 55.1 8.9 42 186-231 96-141 (383)
340 TIGR00968 3a0106s01 sulfate AB 96.2 0.0083 1.8E-07 55.3 5.5 54 284-337 140-197 (237)
341 PRK05480 uridine/cytidine kina 96.2 0.0044 9.5E-08 55.9 3.5 25 207-231 4-28 (209)
342 cd03283 ABC_MutS-like MutS-lik 96.2 0.028 6.1E-07 50.4 8.7 22 210-231 26-47 (199)
343 PRK13650 cbiO cobalt transport 96.2 0.038 8.3E-07 52.3 10.0 56 281-336 147-206 (279)
344 PF12775 AAA_7: P-loop contain 96.2 0.0091 2E-07 56.3 5.7 33 196-231 23-55 (272)
345 cd03256 ABC_PhnC_transporter A 96.2 0.044 9.5E-07 50.4 10.2 54 284-337 154-211 (241)
346 COG0563 Adk Adenylate kinase a 96.2 0.015 3.2E-07 51.2 6.7 22 211-232 2-23 (178)
347 COG1120 FepC ABC-type cobalami 96.2 0.032 7E-07 51.7 9.1 129 209-337 28-205 (258)
348 PRK13652 cbiO cobalt transport 96.2 0.056 1.2E-06 51.1 11.1 56 281-336 144-203 (277)
349 cd03262 ABC_HisP_GlnQ_permease 96.2 0.044 9.5E-07 49.4 10.0 53 284-336 145-200 (213)
350 KOG0924 mRNA splicing factor A 96.2 0.03 6.5E-07 57.7 9.5 130 195-334 361-513 (1042)
351 KOG0734 AAA+-type ATPase conta 96.2 0.04 8.6E-07 55.5 10.1 47 186-232 304-360 (752)
352 PRK15064 ABC transporter ATP-b 96.1 0.073 1.6E-06 55.2 12.8 53 283-337 164-218 (530)
353 PRK11629 lolD lipoprotein tran 96.1 0.049 1.1E-06 49.9 10.3 54 284-337 155-212 (233)
354 cd03232 ABC_PDR_domain2 The pl 96.1 0.026 5.7E-07 50.1 8.3 22 210-231 34-55 (192)
355 TIGR02315 ABC_phnC phosphonate 96.1 0.043 9.3E-07 50.6 10.0 52 285-336 156-211 (243)
356 TIGR03005 ectoine_ehuA ectoine 96.1 0.044 9.6E-07 50.9 10.1 53 284-336 156-212 (252)
357 PRK11153 metN DL-methionine tr 96.1 0.048 1E-06 53.3 10.7 55 283-337 149-207 (343)
358 PTZ00088 adenylate kinase 1; P 96.1 0.019 4.2E-07 52.6 7.4 21 211-231 8-28 (229)
359 PRK12726 flagellar biosynthesi 96.1 0.078 1.7E-06 52.0 11.9 101 208-315 205-311 (407)
360 cd03297 ABC_ModC_molybdenum_tr 96.1 0.063 1.4E-06 48.5 10.8 54 283-336 140-197 (214)
361 PRK13537 nodulation ABC transp 96.1 0.048 1E-06 52.3 10.5 54 284-337 148-204 (306)
362 COG1131 CcmA ABC-type multidru 96.1 0.011 2.3E-07 56.5 5.8 128 210-337 32-203 (293)
363 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.071 1.5E-06 47.9 11.0 52 284-335 135-188 (207)
364 PRK15439 autoinducer 2 ABC tra 96.1 0.067 1.5E-06 55.2 12.2 128 210-337 38-206 (510)
365 TIGR02673 FtsE cell division A 96.1 0.054 1.2E-06 48.9 10.3 54 283-336 146-202 (214)
366 PRK06547 hypothetical protein; 96.1 0.0086 1.9E-07 52.4 4.7 26 207-232 13-38 (172)
367 cd01428 ADK Adenylate kinase ( 96.1 0.03 6.5E-07 49.5 8.4 20 212-231 2-21 (194)
368 KOG1532 GTPase XAB1, interacts 96.1 0.02 4.3E-07 53.0 7.0 91 207-300 17-123 (366)
369 cd03296 ABC_CysA_sulfate_impor 96.1 0.054 1.2E-06 49.9 10.2 22 210-231 29-50 (239)
370 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.097 2.1E-06 48.1 11.9 52 285-336 150-203 (238)
371 TIGR00235 udk uridine kinase. 96.0 0.0058 1.3E-07 55.1 3.6 25 207-231 4-28 (207)
372 PRK14528 adenylate kinase; Pro 96.0 0.017 3.8E-07 51.1 6.6 22 210-231 2-23 (186)
373 cd02019 NK Nucleoside/nucleoti 96.0 0.0046 1E-07 45.3 2.4 21 211-231 1-21 (69)
374 PRK11300 livG leucine/isoleuci 96.0 0.047 1E-06 50.8 9.8 55 283-337 162-220 (255)
375 cd01122 GP4d_helicase GP4d_hel 96.0 0.081 1.8E-06 49.6 11.5 51 209-262 30-80 (271)
376 cd03253 ABCC_ATM1_transporter 96.0 0.088 1.9E-06 48.3 11.5 54 283-336 146-201 (236)
377 PRK03839 putative kinase; Prov 96.0 0.0044 9.6E-08 54.4 2.6 21 211-231 2-22 (180)
378 PRK13548 hmuV hemin importer A 96.0 0.07 1.5E-06 49.8 10.8 47 291-337 157-207 (258)
379 PRK05703 flhF flagellar biosyn 96.0 0.068 1.5E-06 53.7 11.3 39 209-247 221-259 (424)
380 KOG1969 DNA replication checkp 96.0 0.026 5.7E-07 58.7 8.3 72 208-303 325-398 (877)
381 COG0464 SpoVK ATPases of the A 96.0 0.056 1.2E-06 55.5 11.0 155 186-372 242-424 (494)
382 TIGR02770 nickel_nikD nickel i 96.0 0.077 1.7E-06 48.5 10.9 54 284-337 135-192 (230)
383 PRK13638 cbiO cobalt transport 96.0 0.078 1.7E-06 49.9 11.1 54 283-336 145-201 (271)
384 PRK08533 flagellar accessory p 96.0 0.044 9.4E-07 50.3 9.2 49 208-260 23-71 (230)
385 cd03224 ABC_TM1139_LivF_branch 96.0 0.017 3.8E-07 52.4 6.5 53 285-337 143-198 (222)
386 cd03300 ABC_PotA_N PotA is an 96.0 0.069 1.5E-06 48.9 10.5 54 283-336 139-196 (232)
387 cd03248 ABCC_TAP TAP, the Tran 96.0 0.097 2.1E-06 47.7 11.4 53 283-335 159-213 (226)
388 TIGR02211 LolD_lipo_ex lipopro 96.0 0.061 1.3E-06 48.8 10.0 52 284-335 151-206 (221)
389 PRK13536 nodulation factor exp 96.0 0.015 3.3E-07 56.6 6.4 55 283-337 181-238 (340)
390 cd03218 ABC_YhbG The ABC trans 96.0 0.047 1E-06 49.9 9.3 53 284-336 143-198 (232)
391 PTZ00494 tuzin-like protein; P 96.0 0.2 4.3E-06 49.9 13.7 165 186-370 371-543 (664)
392 TIGR01288 nodI ATP-binding ABC 95.9 0.099 2.1E-06 50.1 11.8 54 284-337 145-201 (303)
393 PRK09493 glnQ glutamine ABC tr 95.9 0.084 1.8E-06 48.6 11.0 53 285-337 147-202 (240)
394 cd02025 PanK Pantothenate kina 95.9 0.028 6E-07 51.3 7.5 21 211-231 1-21 (220)
395 PRK10419 nikE nickel transport 95.9 0.092 2E-06 49.3 11.3 57 280-336 157-217 (268)
396 PRK11701 phnK phosphonate C-P 95.9 0.052 1.1E-06 50.6 9.6 55 283-337 160-218 (258)
397 PRK13634 cbiO cobalt transport 95.9 0.062 1.3E-06 51.1 10.3 54 283-336 154-211 (290)
398 TIGR03574 selen_PSTK L-seryl-t 95.9 0.03 6.4E-07 52.0 7.8 21 211-231 1-21 (249)
399 cd03295 ABC_OpuCA_Osmoprotecti 95.9 0.055 1.2E-06 49.9 9.6 53 285-337 146-202 (242)
400 cd03252 ABCC_Hemolysin The ABC 95.9 0.061 1.3E-06 49.4 9.8 52 285-336 149-202 (237)
401 PRK13639 cbiO cobalt transport 95.9 0.071 1.5E-06 50.3 10.4 54 283-336 146-202 (275)
402 PRK13546 teichoic acids export 95.9 0.12 2.6E-06 48.5 11.8 54 284-337 153-209 (264)
403 PRK09984 phosphonate/organopho 95.9 0.081 1.8E-06 49.4 10.8 54 284-337 162-219 (262)
404 KOG2035 Replication factor C, 95.9 0.03 6.4E-07 52.0 7.4 192 186-399 13-222 (351)
405 COG1116 TauB ABC-type nitrate/ 95.9 0.046 1E-06 50.1 8.6 22 210-231 30-51 (248)
406 PRK10938 putative molybdenum t 95.9 0.07 1.5E-06 54.7 11.2 53 284-336 145-200 (490)
407 COG1102 Cmk Cytidylate kinase 95.9 0.01 2.3E-07 50.5 4.1 44 211-267 2-45 (179)
408 PRK11000 maltose/maltodextrin 95.9 0.059 1.3E-06 53.1 10.1 55 283-337 142-200 (369)
409 cd02027 APSK Adenosine 5'-phos 95.9 0.081 1.8E-06 45.0 9.7 21 211-231 1-21 (149)
410 PRK10895 lipopolysaccharide AB 95.9 0.064 1.4E-06 49.4 9.8 23 210-232 30-52 (241)
411 cd03299 ABC_ModC_like Archeal 95.9 0.087 1.9E-06 48.4 10.7 23 210-232 26-48 (235)
412 PRK14721 flhF flagellar biosyn 95.9 0.17 3.6E-06 50.6 13.2 23 209-231 191-213 (420)
413 TIGR00416 sms DNA repair prote 95.9 0.054 1.2E-06 54.9 10.0 101 194-302 79-180 (454)
414 PRK13643 cbiO cobalt transport 95.9 0.13 2.7E-06 49.0 12.0 54 283-336 153-209 (288)
415 COG2842 Uncharacterized ATPase 95.9 0.057 1.2E-06 50.7 9.2 119 186-317 72-191 (297)
416 PRK09519 recA DNA recombinatio 95.9 0.036 7.9E-07 59.2 9.0 98 198-302 48-148 (790)
417 PRK13409 putative ATPase RIL; 95.9 0.061 1.3E-06 56.4 10.6 154 210-371 366-554 (590)
418 PRK10619 histidine/lysine/argi 95.8 0.12 2.6E-06 48.1 11.7 55 283-337 161-218 (257)
419 COG0488 Uup ATPase components 95.8 0.072 1.6E-06 54.9 10.9 59 277-337 156-216 (530)
420 PRK11823 DNA repair protein Ra 95.8 0.042 9.1E-07 55.6 9.1 99 196-302 67-166 (446)
421 PRK13644 cbiO cobalt transport 95.8 0.08 1.7E-06 49.9 10.5 53 283-335 145-200 (274)
422 KOG0927 Predicted transporter 95.8 0.55 1.2E-05 47.7 16.5 148 186-336 394-571 (614)
423 cd03254 ABCC_Glucan_exporter_l 95.8 0.061 1.3E-06 49.1 9.4 54 282-335 147-202 (229)
424 PRK13640 cbiO cobalt transport 95.8 0.072 1.6E-06 50.5 10.2 54 283-336 152-209 (282)
425 PRK10636 putative ABC transpor 95.8 0.12 2.7E-06 54.8 12.9 56 280-337 155-212 (638)
426 TIGR01425 SRP54_euk signal rec 95.8 0.13 2.8E-06 51.5 12.2 24 208-231 99-122 (429)
427 PF01583 APS_kinase: Adenylyls 95.8 0.01 2.2E-07 50.9 3.9 36 209-246 2-37 (156)
428 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.017 3.8E-07 51.7 5.6 21 210-230 29-49 (200)
429 PRK14247 phosphate ABC transpo 95.8 0.14 3.1E-06 47.4 11.9 53 284-336 156-210 (250)
430 PRK14738 gmk guanylate kinase; 95.8 0.0082 1.8E-07 54.1 3.4 31 201-231 5-35 (206)
431 PRK13651 cobalt transporter AT 95.8 0.082 1.8E-06 50.7 10.5 54 283-336 174-230 (305)
432 PRK13409 putative ATPase RIL; 95.8 0.054 1.2E-06 56.8 9.9 23 209-231 99-121 (590)
433 smart00534 MUTSac ATPase domai 95.8 0.0041 8.8E-08 55.1 1.4 120 211-337 1-128 (185)
434 cd01135 V_A-ATPase_B V/A-type 95.8 0.04 8.7E-07 51.6 8.0 94 210-303 70-177 (276)
435 PRK10575 iron-hydroxamate tran 95.8 0.078 1.7E-06 49.7 10.0 55 282-336 155-213 (265)
436 TIGR00150 HI0065_YjeE ATPase, 95.8 0.013 2.8E-07 48.9 4.1 41 193-233 6-46 (133)
437 PRK11650 ugpC glycerol-3-phosp 95.8 0.017 3.7E-07 56.7 5.7 57 281-337 141-201 (356)
438 PRK08972 fliI flagellum-specif 95.8 0.029 6.3E-07 56.0 7.3 89 210-302 163-262 (444)
439 TIGR03410 urea_trans_UrtE urea 95.7 0.069 1.5E-06 48.8 9.5 54 284-337 141-198 (230)
440 TIGR00972 3a0107s01c2 phosphat 95.7 0.13 2.8E-06 47.6 11.4 53 285-337 155-209 (247)
441 KOG0728 26S proteasome regulat 95.7 0.34 7.4E-06 44.4 13.4 173 189-396 150-353 (404)
442 cd01125 repA Hexameric Replica 95.7 0.054 1.2E-06 49.9 8.7 22 211-232 3-24 (239)
443 PRK13649 cbiO cobalt transport 95.7 0.074 1.6E-06 50.3 9.8 55 283-337 154-211 (280)
444 PRK13635 cbiO cobalt transport 95.7 0.026 5.6E-07 53.4 6.6 54 283-336 149-206 (279)
445 TIGR02142 modC_ABC molybdenum 95.7 0.094 2E-06 51.4 10.8 55 283-337 140-198 (354)
446 cd03245 ABCC_bacteriocin_expor 95.7 0.091 2E-06 47.6 10.0 51 285-335 151-203 (220)
447 PRK04040 adenylate kinase; Pro 95.7 0.0085 1.8E-07 53.2 3.1 23 209-231 2-24 (188)
448 PRK11147 ABC transporter ATPas 95.7 0.16 3.5E-06 53.8 13.2 55 281-337 163-219 (635)
449 PRK14269 phosphate ABC transpo 95.7 0.12 2.6E-06 47.8 10.9 56 281-336 149-206 (246)
450 PRK10253 iron-enterobactin tra 95.7 0.11 2.3E-06 48.8 10.7 53 284-336 153-209 (265)
451 TIGR01351 adk adenylate kinase 95.7 0.051 1.1E-06 49.0 8.2 20 212-231 2-21 (210)
452 PRK13641 cbiO cobalt transport 95.7 0.15 3.2E-06 48.5 11.7 55 283-337 154-211 (287)
453 cd03227 ABC_Class2 ABC-type Cl 95.7 0.043 9.3E-07 47.4 7.4 47 291-337 98-147 (162)
454 PRK13531 regulatory ATPase Rav 95.7 0.012 2.5E-07 59.4 4.2 42 186-231 20-61 (498)
455 PRK10923 glnG nitrogen regulat 95.7 0.072 1.6E-06 54.2 10.2 47 186-232 138-184 (469)
456 COG1419 FlhF Flagellar GTP-bin 95.7 0.2 4.4E-06 49.2 12.6 102 209-317 203-309 (407)
457 PRK11388 DNA-binding transcrip 95.7 0.1 2.2E-06 55.5 11.6 46 186-231 325-370 (638)
458 PF00625 Guanylate_kin: Guanyl 95.6 0.012 2.6E-07 51.9 3.9 37 209-247 2-38 (183)
459 PRK11144 modC molybdate transp 95.6 0.076 1.6E-06 52.0 9.8 126 210-337 25-195 (352)
460 TIGR02314 ABC_MetN D-methionin 95.6 0.016 3.6E-07 56.4 5.1 56 282-337 148-207 (343)
461 PRK12597 F0F1 ATP synthase sub 95.6 0.027 5.9E-07 56.7 6.7 91 210-301 144-246 (461)
462 PRK14723 flhF flagellar biosyn 95.6 0.1 2.2E-06 55.7 11.2 23 209-231 185-207 (767)
463 PRK00131 aroK shikimate kinase 95.6 0.0091 2E-07 51.8 3.0 23 209-231 4-26 (175)
464 TIGR03575 selen_PSTK_euk L-ser 95.6 0.075 1.6E-06 51.6 9.5 20 212-231 2-21 (340)
465 PRK10820 DNA-binding transcrip 95.6 0.13 2.8E-06 53.2 11.9 46 186-231 204-249 (520)
466 COG4618 ArpD ABC-type protease 95.6 0.13 2.7E-06 51.8 11.1 55 283-337 481-538 (580)
467 PRK14526 adenylate kinase; Pro 95.6 0.095 2.1E-06 47.4 9.7 20 212-231 3-22 (211)
468 TIGR03375 type_I_sec_LssB type 95.6 0.14 3E-06 55.0 12.6 22 210-231 492-513 (694)
469 PRK09580 sufC cysteine desulfu 95.6 0.14 3.1E-06 47.3 11.2 54 283-336 154-210 (248)
470 PRK06002 fliI flagellum-specif 95.6 0.043 9.3E-07 55.0 8.0 89 210-302 166-264 (450)
471 PRK10851 sulfate/thiosulfate t 95.6 0.027 5.9E-07 55.2 6.6 55 283-337 145-203 (353)
472 PF00406 ADK: Adenylate kinase 95.6 0.042 9.2E-07 46.7 7.0 18 214-231 1-18 (151)
473 PRK10762 D-ribose transporter 95.6 0.12 2.7E-06 53.1 11.6 56 282-337 149-207 (501)
474 PRK10418 nikD nickel transport 95.6 0.19 4.1E-06 46.7 11.9 54 283-336 149-206 (254)
475 PRK05973 replicative DNA helic 95.6 0.091 2E-06 48.3 9.5 148 208-373 63-226 (237)
476 PRK11432 fbpC ferric transport 95.6 0.019 4.1E-07 56.2 5.3 55 283-337 145-203 (351)
477 PRK05439 pantothenate kinase; 95.6 0.076 1.6E-06 50.9 9.3 26 206-231 83-108 (311)
478 PF08433 KTI12: Chromatin asso 95.6 0.029 6.2E-07 52.8 6.2 22 210-231 2-23 (270)
479 COG1066 Sms Predicted ATP-depe 95.6 0.1 2.2E-06 51.2 10.0 101 194-303 78-179 (456)
480 PRK10982 galactose/methyl gala 95.6 0.13 2.8E-06 52.7 11.6 53 284-336 144-199 (491)
481 COG2401 ABC-type ATPase fused 95.6 0.017 3.8E-07 56.4 4.7 156 187-345 372-579 (593)
482 cd03251 ABCC_MsbA MsbA is an e 95.5 0.13 2.7E-06 47.1 10.4 55 283-337 147-203 (234)
483 PRK04328 hypothetical protein; 95.5 0.046 9.9E-07 50.8 7.5 126 198-330 12-172 (249)
484 TIGR02322 phosphon_PhnN phosph 95.5 0.01 2.2E-07 52.1 2.9 23 210-232 2-24 (179)
485 PF00006 ATP-synt_ab: ATP synt 95.5 0.022 4.8E-07 51.6 5.2 86 210-301 16-114 (215)
486 PRK13646 cbiO cobalt transport 95.5 0.14 3.1E-06 48.6 11.0 56 281-336 152-211 (286)
487 cd02023 UMPK Uridine monophosp 95.5 0.0082 1.8E-07 53.6 2.4 21 211-231 1-21 (198)
488 PRK08149 ATP synthase SpaL; Va 95.5 0.05 1.1E-06 54.3 8.0 90 210-303 152-252 (428)
489 PRK12727 flagellar biosynthesi 95.5 0.046 1E-06 55.8 7.8 23 209-231 350-372 (559)
490 cd01129 PulE-GspE PulE/GspE Th 95.5 0.055 1.2E-06 50.7 8.0 129 189-337 62-190 (264)
491 TIGR02323 CP_lyasePhnK phospho 95.5 0.14 2.9E-06 47.6 10.6 56 282-337 156-215 (253)
492 TIGR01069 mutS2 MutS2 family p 95.5 0.011 2.3E-07 63.8 3.5 122 208-337 321-451 (771)
493 TIGR02329 propionate_PrpR prop 95.5 0.11 2.3E-06 53.7 10.6 46 186-231 212-257 (526)
494 TIGR00390 hslU ATP-dependent p 95.5 0.037 8E-07 54.8 6.9 46 186-231 12-69 (441)
495 PRK11819 putative ABC transpor 95.5 0.19 4.2E-06 52.4 12.7 53 283-337 172-226 (556)
496 cd03285 ABC_MSH2_euk MutS2 hom 95.5 0.014 3.1E-07 53.2 3.8 122 208-337 29-159 (222)
497 PRK13632 cbiO cobalt transport 95.5 0.091 2E-06 49.4 9.4 23 210-232 36-58 (271)
498 PRK11231 fecE iron-dicitrate t 95.5 0.14 3E-06 47.6 10.6 53 284-336 148-203 (255)
499 PRK14264 phosphate ABC transpo 95.5 0.18 4E-06 48.3 11.6 55 283-337 209-265 (305)
500 PRK09452 potA putrescine/sperm 95.5 0.025 5.4E-07 55.8 5.7 55 283-337 153-211 (375)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-40 Score=350.48 Aligned_cols=327 Identities=21% Similarity=0.292 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHhhh
Q 015752 46 IVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTY 119 (401)
Q Consensus 46 ~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD~~ 119 (401)
.++..++|+.+.+.+ ..+.+.++++..|++.| +++++++..+ ... ..+..|.+.+++++|++||+++.+
T Consensus 4 ~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~--~~~---~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR--DDL---ERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred EEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc--chH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777666 66777778888888888 9999999988 666 889999999999999999999999
Q ss_pred hhhhhhccC------------ccc-hhcccchhhhHHHHHHHHHHHHHHhhccCCCCCCCccCCCCccccccCCCCCCC-
Q 015752 120 FTNIMQQQN------------SEA-ESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPR- 185 (401)
Q Consensus 120 ~~~~~~~~~------------~~~-~~~~~~~~~~r~~i~~~i~~l~~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~- 185 (401)
..+...++. ..| ...+...+...+.+.+++..+...++.+..+.. +..... +......+.+.+.
T Consensus 79 ~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~-~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 79 LVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGE-SLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccc-cccchhhcccCCCC
Confidence 887766431 112 222233334445566666666666666543321 111100 0000111122222
Q ss_pred --CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC-cccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 --LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH-VKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 --~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.. ||.+..++++.+.|..++. .+++|+||||+||||||++++|+.. ++++|+.++||++|+.++...++++|+.
T Consensus 157 ~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 157 SESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred cccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 33 9999999999999998654 8999999999999999999999987 9999999999999999999999999999
Q ss_pred HcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh-chhC
Q 015752 263 SVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS-LEME 340 (401)
Q Consensus 263 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-~~~~ 340 (401)
.++.... .+.. ...+++..|.+.|++|||||||||||+ ..+|+.+..++|...+||+|++|||++.|+.. +
T Consensus 234 ~l~~~~~---~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m--- 306 (889)
T KOG4658|consen 234 RLGLLDE---EWEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM--- 306 (889)
T ss_pred HhccCCc---ccchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccc---
Confidence 9987543 2333 557999999999999999999999999 99999999999999899999999999999999 5
Q ss_pred CCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 341 NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 341 ~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
+.... +++ +| +++|||.||++.+|..+..+. +.++++|++|| +|+|.++
T Consensus 307 ~~~~~~~v~------~L--~~~eaW~LF~~~v~~~~~~~~---~~i~~lak~v~~kC~GLPL 357 (889)
T KOG4658|consen 307 GVDYPIEVE------CL--TPEEAWDLFQKKVGPNTLGSH---PDIEELAKEVAEKCGGLPL 357 (889)
T ss_pred cCCcccccc------cc--CccccHHHHHHhhcccccccc---ccHHHHHHHHHHHhCChHH
Confidence 44555 999 99 999999999999997654443 33899999999 9999875
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=8.3e-31 Score=249.11 Aligned_cols=194 Identities=29% Similarity=0.466 Sum_probs=152.6
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC
Q 015752 191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV 270 (401)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 270 (401)
||.++++|.++|.....+.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999998667899999999999999999999999766999999999999999988899999999999887432
Q ss_pred ccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCCCcce-ecc
Q 015752 271 SVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI-RLD 348 (401)
Q Consensus 271 ~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~ 348 (401)
. ... +...+...+.+.|+++++||||||||+ ...|+.+...++....||+||||||+..++..+ ...... +|+
T Consensus 81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~--~~~~~~~~l~ 155 (287)
T PF00931_consen 81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSL--GGTDKVIELE 155 (287)
T ss_dssp S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTH--HSCEEEEECS
T ss_pred c--ccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 1 122 788899999999999999999999999 889999998888777899999999999988776 122445 999
Q ss_pred cccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 349 SVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 349 ~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
+| +++||++||.+.++... ...++.+.+++++|+ +|+|.++
T Consensus 156 ------~L--~~~ea~~L~~~~~~~~~---~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 156 ------PL--SEEEALELFKKRAGRKE---SESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp ------S----HHHHHHHHHHHHTSHS-------TTSCTHHHHHHHHTTT-HH
T ss_pred ------cc--ccccccccccccccccc---ccccccccccccccccccccccc
Confidence 99 99999999999997533 122345578899999 9999864
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.8e-24 Score=240.07 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=148.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc---CCC-----------C
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV---SLD-----------Y 251 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~ 251 (401)
.++||++..++++..+|..+....++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +.. +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence 6899999999999999876667899999999999999999999999 78889998888742 111 1
Q ss_pred C-HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752 252 D-FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 252 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 330 (401)
+ ...+..+++..+..... .... . ...+++.|+++|+||||||||+ ...|+.+.......++||+||||||+
T Consensus 262 ~~~~~l~~~~l~~il~~~~----~~~~--~-~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD----IKIY--H-LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC----cccC--C-HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 1 12344455555433211 1110 1 1457788999999999999999 99999998776666789999999999
Q ss_pred hhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 331 PDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 331 ~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
..++..+ ...++ +++ .| ++++||+||+++|+.. ...++.+++++++|| +|+|.++
T Consensus 334 ~~vl~~~---~~~~~~~v~------~l--~~~ea~~LF~~~Af~~----~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 334 KHFLRAH---GIDHIYEVC------LP--SNELALEMFCRSAFKK----NSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred HHHHHhc---CCCeEEEec------CC--CHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhCCCcH
Confidence 9999876 55667 999 99 9999999999999852 123457899999999 9999764
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=9.4e-10 Score=109.37 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=114.2
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
..++||++++++|...|... +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..|+.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 67999999999999998542 3344567899999999999999999843222212345666666666788899999999
Q ss_pred cCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C----chhHHHHHhhCCCCC-CCcEEEEecCChhHH
Q 015752 264 VIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D----SEIWIDVEELLPDDE-NGSRVFITVTDPDLL 334 (401)
Q Consensus 264 l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~-~gs~iivTTR~~~v~ 334 (401)
+..... .... +...+...+.+.+. +++.+||||+++. . .+.+..+...+.... .+-.+|.++....+.
T Consensus 110 l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 110 LFGHPP---PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred hcCCCC---CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 876311 1112 56667777777775 4678999999976 2 223344433332221 122356666555433
Q ss_pred hhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 335 ASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 335 ~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.... .. ....+.++ |+ +.++..+++..++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~------py--~~~e~~~il~~r~ 220 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFP------PY--TADEIFDILKDRV 220 (394)
T ss_pred hhcCHHHHhcCCcceeecC------CC--CHHHHHHHHHHHH
Confidence 3220 00 22334788 99 9999999999887
No 5
>PF05729 NACHT: NACHT domain
Probab=99.16 E-value=4.2e-10 Score=97.38 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHH---HHHHHHHHHcCCCCCCccccCcCHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFR---RILDDIIKSVIPPSRVSVIIGEDYQLKK 282 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 282 (401)
+++.|+|.+|+||||+++.++........ +...+|++.+...... .+...|..+..... . ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~-~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI------A-PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch------h-hhHH--
Confidence 47899999999999999999875333222 4567777765533322 33333433332221 1 1111
Q ss_pred HHHHHHc-CCceEEEEEeCCCC-C--ch-----hHHH-HHhhCCC-CCCCcEEEEecCChhHHhhchhCCCcce-ecccc
Q 015752 283 SILRDYL-TNKKYFIVLDDVFD-D--SE-----IWID-VEELLPD-DENGSRVFITVTDPDLLASLEMENGEKI-RLDSV 350 (401)
Q Consensus 283 ~~l~~~L-~~kr~LlVlDdv~~-~--~~-----~~~~-l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~~~ 350 (401)
.+...+ +.++++||||++.. . .. .+.. +...++. ..+++++|||||..........-..... .++
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~-- 148 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE-- 148 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC--
Confidence 222222 57899999999976 1 11 1222 3333433 2568999999999876322211133344 999
Q ss_pred cCCCCCCCChHHHHHHHHHhhC
Q 015752 351 LFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 351 ~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+| ++++..+++.+...
T Consensus 149 ----~~--~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 149 ----PF--SEEDIKQYLRKYFS 164 (166)
T ss_pred ----CC--CHHHHHHHHHHHhh
Confidence 99 99999999988763
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=6.2e-09 Score=102.39 Aligned_cols=175 Identities=17% Similarity=0.079 Sum_probs=109.0
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cc--c-CeEEEEEcCCCCCHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FY--F-DCHAWVRVSLDYDFRRILDD 259 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F-~~~~wv~vs~~~~~~~~~~~ 259 (401)
..++||+.++++|...|.. .+.....+.|+|++|+|||++++.++++..-. .. . -..+|++.....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 6799999999999999864 23344578899999999999999999742110 11 1 14567777776677889999
Q ss_pred HHHHcCC---CCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C---chhHHHHHhh--CCCCC-CCcEEEE
Q 015752 260 IIKSVIP---PSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D---SEIWIDVEEL--LPDDE-NGSRVFI 326 (401)
Q Consensus 260 i~~~l~~---~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~---~~~~~~l~~~--l~~~~-~gs~iiv 326 (401)
|+.++.. ..+ ... +..++...+.+.+. +++++||||+++. . .+....+... ..... ....+|.
T Consensus 95 i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 95 LANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999842 211 111 44555566666653 5688999999977 1 1112233322 11111 2234455
Q ss_pred ecCChhHHhhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 327 TVTDPDLLASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 327 TTR~~~v~~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|........+. .. ....+.++ |+ +.++..+++..++.
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~------p~--~~~e~~~il~~r~~ 213 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFP------PY--DAEELRDILENRAE 213 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeC------CC--CHHHHHHHHHHHHH
Confidence 554443322210 00 11223777 99 99999999998873
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=3e-08 Score=93.23 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=102.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
+...+.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|+..++...... ........+...+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 34578899999999999999999843321 11 22233 3334577888999998887653210 000012233333333
Q ss_pred Hc-CCceEEEEEeCCCC-CchhHHHHHhhCCC---CCCCcEEEEecCChhHHhhch--------hCCCcceecccccCCC
Q 015752 288 YL-TNKKYFIVLDDVFD-DSEIWIDVEELLPD---DENGSRVFITVTDPDLLASLE--------MENGEKIRLDSVLFGG 354 (401)
Q Consensus 288 ~L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~---~~~gs~iivTTR~~~v~~~~~--------~~~~~~~~l~~~~~~~ 354 (401)
.+ .+++.+||+||++. +...++.+...... +.....|++|.... ...... ......+.++
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~------ 190 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLG------ 190 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCC------
Confidence 33 67889999999988 55667766543221 12223445555432 222210 0011223678
Q ss_pred CCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 355 PLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 355 ~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
+| +.+|...++...+........ ..--.+..+.|+ .|+|+++
T Consensus 191 ~l--~~~e~~~~l~~~l~~~g~~~~--~~~~~~~~~~i~~~s~G~p~ 233 (269)
T TIGR03015 191 PL--DREETREYIEHRLERAGNRDA--PVFSEGAFDAIHRFSRGIPR 233 (269)
T ss_pred CC--CHHHHHHHHHHHHHHcCCCCC--CCcCHHHHHHHHHHcCCccc
Confidence 99 999999999987642111111 011146777888 8888754
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.93 E-value=6.6e-09 Score=94.96 Aligned_cols=193 Identities=19% Similarity=0.154 Sum_probs=93.2
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHH--------
Q 015752 188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD-------- 259 (401)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-------- 259 (401)
|+||+.++++|.+++..+ ....+.|+|+.|+|||+|++.+.+ ..+..-..++|+........ .....
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence 799999999999998763 356888999999999999999998 33221113444443333322 11112
Q ss_pred ------HHHHcCCCCCCc--cccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC-C------chhHHHHH---hhCCCCC
Q 015752 260 ------IIKSVIPPSRVS--VIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-D------SEIWIDVE---ELLPDDE 319 (401)
Q Consensus 260 ------i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~------~~~~~~l~---~~l~~~~ 319 (401)
+...+....... .............+.+.+ .+++++||+|++.. . ......+. .......
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 222222111000 000112222222333333 23569999999866 2 11122333 3333333
Q ss_pred CCcEEEEecCChhHHhhc-----h-hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh
Q 015752 320 NGSRVFITVTDPDLLASL-----E-MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV 393 (401)
Q Consensus 320 ~gs~iivTTR~~~v~~~~-----~-~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~ 393 (401)
+.+ +|++..+....... . .+....+.|+ || +.+++++++...+... . +. +.-.+...+|.
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~------~l--~~~e~~~~~~~~~~~~-~-~~---~~~~~~~~~i~ 221 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELK------PL--SKEEAREFLKELFKEL-I-KL---PFSDEDIEEIY 221 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE------------HHHHHHHHHHHHHCC-----------HHHHHHHH
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEEEe------eC--CHHHHHHHHHHHHHHh-h-cc---cCCHHHHHHHH
Confidence 344 44555555554431 0 0122335888 99 9999999999987432 1 11 00133447777
Q ss_pred -ccCCCC
Q 015752 394 -LCWSYL 399 (401)
Q Consensus 394 -~C~~~l 399 (401)
.+||++
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 888875
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=98.90 E-value=1.7e-08 Score=92.74 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
.+.+.|+|++|+|||+|++.+++ ........+.|+++.... .... .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~-------------------------~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSP-------------------------AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhH-------------------------HHHhh
Confidence 35688999999999999999998 333333455676653110 0000 11111
Q ss_pred cCCceEEEEEeCCCC-C-chhHHH-HHhhCCCC-CCCcEEEE-ecCC---------hhHHhhchhCCCcce-ecccccCC
Q 015752 289 LTNKKYFIVLDDVFD-D-SEIWID-VEELLPDD-ENGSRVFI-TVTD---------PDLLASLEMENGEKI-RLDSVLFG 353 (401)
Q Consensus 289 L~~kr~LlVlDdv~~-~-~~~~~~-l~~~l~~~-~~gs~iiv-TTR~---------~~v~~~~~~~~~~~~-~l~~~~~~ 353 (401)
+. +.-+|+|||+|. . ...|+. +...+... ..|+.+|| |++. +++...+ ....+ +++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~l~----- 159 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQLN----- 159 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeeeCC-----
Confidence 21 235899999987 2 345653 33333321 23555554 5544 3455554 33455 899
Q ss_pred CCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752 354 GPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY 398 (401)
Q Consensus 354 ~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~ 398 (401)
++ +.++.++++.+.+...... .. .++..-|+ .|.+.
T Consensus 160 -~p--d~e~~~~iL~~~a~~~~l~--l~----~~v~~~L~~~~~~d 196 (229)
T PRK06893 160 -DL--TDEQKIIVLQRNAYQRGIE--LS----DEVANFLLKRLDRD 196 (229)
T ss_pred -CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHhccCC
Confidence 99 9999999999988532111 11 45555566 66554
No 10
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=2e-08 Score=110.35 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=112.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l 264 (401)
..++-|+. |.+.|.. ....+++.|.|++|.||||++..+.+. ++.++|+++.. +-++..++..++..+
T Consensus 14 ~~~~~R~r----l~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRER----LLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchH----HHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 45566664 4444433 245789999999999999999998752 23689999865 446666667777776
Q ss_pred CCCCCCc--------cccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-CchhHH-HHHhhCCCCCCCcEEEEecCCh
Q 015752 265 IPPSRVS--------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-DSEIWI-DVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 265 ~~~~~~~--------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~~~~~-~l~~~l~~~~~gs~iivTTR~~ 331 (401)
....... ..... +...+...+...+. +.+++|||||+.. +..... .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 4221110 00111 22333333433332 6899999999977 433333 4444444445567888999984
Q ss_pred hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 332 DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 332 ~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.............. .++...| +| +.+|+..||....|... . .+...+|. .|+|+.
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l--~f--~~~e~~~ll~~~~~~~~-----~----~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQL--AF--DHQEAQQFFDQRLSSPI-----E----AAESSRLCDDVEGWA 219 (903)
T ss_pred CCCchHhHHhcCcceecCHHhC--CC--CHHHHHHHHHhccCCCC-----C----HHHHHHHHHHhCChH
Confidence 21111100011222 4443334 78 99999999998876421 1 23345667 777764
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.83 E-value=3.4e-08 Score=95.82 Aligned_cols=188 Identities=14% Similarity=0.012 Sum_probs=100.6
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+|+|+++.++.+...+.. .......+.|+|++|+|||+||+.+++. ....+ .++..+ .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 8899999999999887753 2344567889999999999999999983 32222 112211 1111222333333
Q ss_pred HcCCCCCCc-cccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCC
Q 015752 263 SVIPPSRVS-VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMEN 341 (401)
Q Consensus 263 ~l~~~~~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~ 341 (401)
.+....--. ++++.-.....+.+...+.+.+..+|+|+..+ .. .+...+| +.+-|..||+...+........
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~-~~---~~~~~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPA-AR---SIRLDLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcc-cc---ceeecCC---CceEEeecCCcccCCHHHHHhc
Confidence 332110000 01111001122233444445555555555433 21 1111122 2455666777554433221111
Q ss_pred CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
...+.++ ++ +.++..+++...++..... .. .+....|+ .|+|++.
T Consensus 172 ~~~~~l~------~~--~~~e~~~il~~~~~~~~~~---~~---~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 172 GIVQRLE------FY--TVEELEKIVKRSARILGVE---ID---EEGALEIARRSRGTPR 217 (328)
T ss_pred CeeeecC------CC--CHHHHHHHHHHHHHHcCCC---cC---HHHHHHHHHHcCCCch
Confidence 1223888 99 9999999999988642211 11 45678888 8998763
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.82 E-value=3.3e-08 Score=94.85 Aligned_cols=187 Identities=14% Similarity=-0.004 Sum_probs=102.9
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+|+|++..+++|..++... ......+.++|++|+|||+||+.+++. ....| ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHH
Confidence 57999999999999888631 234556789999999999999999983 32222 11221111111 12222333
Q ss_pred HcCCCCCCc-cccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCC
Q 015752 263 SVIPPSRVS-VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMEN 341 (401)
Q Consensus 263 ~l~~~~~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~ 341 (401)
.+....--. ++++.-.......+...+.+.+..+|+++..+ ...| ...+| +.+-|..||+...+........
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPS-ARSV---RLDLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcc-ccce---eecCC---CeEEEEecCCccccCHHHHhhc
Confidence 332210000 11111011223445555556666666766544 3222 11122 2455666777654433321112
Q ss_pred Ccce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 342 GEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 342 ~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
..+ .++ ++ +.++..+++.+.++.... ..+ .+....|+ .|+|++.
T Consensus 151 -~~~~~l~------~l--~~~e~~~il~~~~~~~~~---~~~---~~al~~ia~~~~G~pR 196 (305)
T TIGR00635 151 -GIILRLE------FY--TVEELAEIVSRSAGLLNV---EIE---PEAALEIARRSRGTPR 196 (305)
T ss_pred -ceEEEeC------CC--CHHHHHHHHHHHHHHhCC---CcC---HHHHHHHHHHhCCCcc
Confidence 334 888 99 999999999998863211 111 34556788 8988764
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=2.6e-08 Score=95.52 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..+.++++ . +.+....+||++|+||||||+.+.. .....| ..+|...+-.+-++.+
T Consensus 30 ~HLlg~~~~lrr~v~---~--~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i----- 92 (436)
T COG2256 30 EHLLGEGKPLRRAVE---A--GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI----- 92 (436)
T ss_pred HhhhCCCchHHHHHh---c--CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH-----
Confidence 445555554444433 2 4566667899999999999999988 444444 3333333222222222
Q ss_pred CCCCCccccCcCHHHHHHHHH-HHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHHhhchhCC
Q 015752 266 PPSRVSVIIGEDYQLKKSILR-DYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLLASLEMEN 341 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~ 341 (401)
.+.-+ ....|++.+|.+|.|+. +..+-+.+ ||.-.+|.-|+| ||-++...-.....+
T Consensus 93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred ----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 22222 22348999999999977 55433433 455566887777 777775322111124
Q ss_pred Ccce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 342 GEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 342 ~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
...+ .++ || +.+|-.+++.+.+
T Consensus 154 R~~vf~lk------~L--~~~di~~~l~ra~ 176 (436)
T COG2256 154 RARVFELK------PL--SSEDIKKLLKRAL 176 (436)
T ss_pred hhheeeee------cC--CHHHHHHHHHHHH
Confidence 5567 999 99 9999999999844
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=9.3e-08 Score=95.63 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=96.9
Q ss_pred CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREE---LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+++|.+..+.. +..++.. .....+.++|++|+||||||+.+++. ....| +.++....-..-++.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHH
Confidence 678888877655 6676654 34557788999999999999999883 32222 222221111111122222
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHH--hh
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLL--AS 336 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~--~~ 336 (401)
..... ..+++.+|+||+++. +....+.|...+.. ++.++| ||.+.... ..
T Consensus 83 ---------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 83 ---------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred ---------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22111 146788999999987 55566677666543 444544 44544321 11
Q ss_pred chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 337 LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 337 ~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
+ ...-.+ .+. +| +.++.+.++.+.+..... +. .+.-.+....|+ .|+|.+
T Consensus 139 L--~SR~~~~~~~------~l--s~e~i~~lL~~~l~~~~~-~~--i~i~~~al~~l~~~s~Gd~ 190 (413)
T PRK13342 139 L--LSRAQVFELK------PL--SEEDIEQLLKRALEDKER-GL--VELDDEALDALARLANGDA 190 (413)
T ss_pred H--hccceeeEeC------CC--CHHHHHHHHHHHHHHhhc-CC--CCCCHHHHHHHHHhCCCCH
Confidence 1 122234 888 99 999999999987632110 11 011134455666 777764
No 15
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.72 E-value=2.2e-08 Score=88.38 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=31.9
Q ss_pred ccccccccHHHHHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 187 DISHFERGREELFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.|+||+++++++...|. ......+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999993 23445689999999999999999999883
No 16
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=5.6e-08 Score=80.82 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccc-----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFY-----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKK 282 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 282 (401)
+.+.+.|+|.+|+|||++++.+.++ .... -..++|+++....+...+...|+.+++..... ..+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHH
Confidence 3468899999999999999999873 2221 34567999888779999999999999987432 12677777
Q ss_pred HHHHHHcCCc-eEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752 283 SILRDYLTNK-KYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 283 ~~l~~~L~~k-r~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~ 330 (401)
..+.+.+... ..+||||++.. +...++.|..... ..+.++|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888888654 46999999855 1233445544433 556677776553
No 17
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=9.8e-08 Score=79.47 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
.+++.|.|+.|+|||||+++++.+.. ....+++++.......... ..+ ....+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 36889999999999999999987332 2345666655443221100 000 22333333
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc-h--hCCCcce-ecccccCCCCCCCChHH
Q 015752 289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL-E--MENGEKI-RLDSVLFGGPLIRLKHE 362 (401)
Q Consensus 289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-~--~~~~~~~-~l~~~~~~~~L~~~~~e 362 (401)
...++.+|+||++.. ...|......+.+..+..+|++|+.+......- . ..+.... +|. || +-.|
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~------Pl--sf~E 126 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELY------PL--SFRE 126 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEEC------CC--CHHH
Confidence 444778899999988 667777776666655678999999987765331 0 0122222 777 88 7766
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=1.2e-06 Score=92.09 Aligned_cols=199 Identities=10% Similarity=-0.021 Sum_probs=116.2
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCc---ccccC--eEEEEEcCCCCCHHHHH
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KFYFD--CHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~ 257 (401)
..+.||++++++|...|.. +.....++.|.|++|.|||++++.+.....- ....+ .+++|+...-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5678999999999998865 2333467789999999999999999863211 11222 35667666666788888
Q ss_pred HHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc-C--CceEEEEEeCCCC-CchhHHHHHhhCCC-CCCCcEEEE--ecC
Q 015752 258 DDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL-T--NKKYFIVLDDVFD-DSEIWIDVEELLPD-DENGSRVFI--TVT 329 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L-~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~-~~~gs~iiv--TTR 329 (401)
..|..++....+ ... ........+...+ . +...+||||++.. ....-+.|...+.. ...+++|+| +|.
T Consensus 835 qvI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 835 QVLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 889888854321 111 3334444444444 2 2345899999976 21111222222211 123455543 333
Q ss_pred ChhHH----hhchhC-CCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHhccCCC
Q 015752 330 DPDLL----ASLEME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSY 398 (401)
Q Consensus 330 ~~~v~----~~~~~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~~C~~~ 398 (401)
.-+.. ..+... ....+..+ |+ +.++-.+++..++... .+...+..++-+|+.++.+.|.
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~------PY--TaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGD 974 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFS------PY--KGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD 974 (1164)
T ss_pred chhcchhhhhhhhhccccccccCC------CC--CHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCH
Confidence 22211 111000 22223456 99 9999999999998642 2333455666666655555554
No 19
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=2.1e-06 Score=84.08 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=95.9
Q ss_pred CccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
..|+||+.+...|...|.. +....+++.|.|++|+|||||++.+..... +. ..+++.. +..+++..++.++
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHHHHHHHc
Confidence 7999999999999999864 223356999999999999999999987322 11 2222222 6799999999999
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc-----C-CceEEEEEeCCCCCchhHHHHH---hhCCCCCCCcEEEEecCChhHHh
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYL-----T-NKKYFIVLDDVFDDSEIWIDVE---ELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~~l~---~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
+.+... ...++...|.+.+ . |++.+||+-=- . .+.+..+. ..|.+...-|.|++----+++..
T Consensus 334 GV~p~~------~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-e-g~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 334 GVPNVE------ACGDLLDFISEACRRAKKMNGETPLLVLKLR-E-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred CCCCcc------cHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-C-CCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 974221 2233444444433 2 67777776432 2 22222221 23344455677887655444322
Q ss_pred hchhCCCcce-ecccccCCCCCCCChHHHHHHHHH
Q 015752 336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFIL 369 (401)
Q Consensus 336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~ 369 (401)
..-.-..-.. .++ ++ +.++|...-..
T Consensus 406 ~~~~lprldf~~vp------~f--sr~qaf~y~~h 432 (550)
T PTZ00202 406 ANTLLPRLDFYLVP------NF--SRSQAFAYTQH 432 (550)
T ss_pred hcccCccceeEecC------CC--CHHHHHHHHhh
Confidence 1100011122 555 77 87777765443
No 20
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=3.6e-07 Score=76.58 Aligned_cols=124 Identities=16% Similarity=0.031 Sum_probs=70.4
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC
Q 015752 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS 268 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 268 (401)
+|++..+..+...+... ....+.|+|.+|+|||++++.+++. ....-..++++..++..........+..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~------ 70 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGH------ 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhh------
Confidence 36778888888887652 3467889999999999999999983 3222234566655443322111110000
Q ss_pred CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C---chhHHHHHhhCCCC---CCCcEEEEecCChh
Q 015752 269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D---SEIWIDVEELLPDD---ENGSRVFITVTDPD 332 (401)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~---~~gs~iivTTR~~~ 332 (401)
. ............++.+||+||++. . ...+..+...+... ..+..||+||....
T Consensus 71 --------~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 --------F--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------h--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 001111122345778999999985 1 12222333333221 35778888888654
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.61 E-value=7.5e-07 Score=86.52 Aligned_cols=170 Identities=14% Similarity=0.049 Sum_probs=91.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCH-HHHHH---HH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDF-RRILD---DI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~---~i 260 (401)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.-... ...+. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 67899999999998888653 344678999999999999999877321 11122 2334443321100 00000 00
Q ss_pred HHHcCCCCCCccccCc-CHHHHHH---HHHHHc--CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-
Q 015752 261 IKSVIPPSRVSVIIGE-DYQLKKS---ILRDYL--TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD- 332 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~l~~---~l~~~L--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~- 332 (401)
...++.. . .... ....... ...... .+.+-+|||||+.. +......|...+......+++|+||....
T Consensus 92 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 92 AHFLGTD-K---RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhh-h---hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000000 0 0000 1111111 111221 23455899999966 44445556665544444577887775432
Q ss_pred HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 333 LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 333 v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+.... ...... .+. |+ +.++....+.+.+.
T Consensus 168 ~~~~L--~sr~~~v~~~------~~--~~~~~~~~l~~~~~ 198 (337)
T PRK12402 168 LIPPI--RSRCLPLFFR------AP--TDDELVDVLESIAE 198 (337)
T ss_pred Cchhh--cCCceEEEec------CC--CHHHHHHHHHHHHH
Confidence 22222 122223 778 99 99999999988764
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.1e-06 Score=91.49 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=105.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......++ +..+..-.....|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 789999999999999886532 244667999999999999998876322111110 011111111111111000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~ 338 (401)
....+.+.... ..+++...+... ..++.-++|||+++. +...|+.|...+-....+.++|+||++.. +...+.
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 00000000001 222222222221 124556889999987 66778888887766556777777776643 333321
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
. ....+++. +| +.++..+.+.+.+...... .. .+....|+ .|.|.+
T Consensus 168 S-RCq~f~Fk------~L--s~eeIv~~L~~Il~~EgI~--id----~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 168 S-RCLQFNLK------QM--PAGHIVSHLERILGEERIA--FE----PQALRLLARAAQGSM 214 (830)
T ss_pred h-heEEEecC------Cc--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHcCCCH
Confidence 1 11333777 99 9999999999887532111 11 34445666 666654
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.57 E-value=2.2e-05 Score=82.29 Aligned_cols=176 Identities=17% Similarity=0.144 Sum_probs=107.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc---CeEEEEEcCC---CCCHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSL---DYDFRRILDD 259 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~~~~~ 259 (401)
++++|.+..+..+.+.+.. .....+.|+|++|+||||||+.+++.......+ ...-|+.+.. ..+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 6789999999988887753 334578899999999999999998754333322 1234554432 1222222111
Q ss_pred H---------------HHHcCCCCC---------Cc----cccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH
Q 015752 260 I---------------IKSVIPPSR---------VS----VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID 310 (401)
Q Consensus 260 i---------------~~~l~~~~~---------~~----~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~ 310 (401)
+ +...+.... .. +.++.-....+..+.+.+++++++++-|+.|. +...|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1 111111100 00 12222223457788888889999999887776 5667888
Q ss_pred HHhhCCCCCCCcEEEE--ecCChhH-HhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 311 VEELLPDDENGSRVFI--TVTDPDL-LASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 311 l~~~l~~~~~gs~iiv--TTR~~~v-~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+...+....+...+++ ||++... ..... .....+.+. |+ +.+|.+.++.+.+.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr-SR~~~i~~~------pl--s~edi~~Il~~~a~ 367 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALR-SRCAEVFFE------PL--TPEDIALIVLNAAE 367 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHH-hceeEEEeC------CC--CHHHHHHHHHHHHH
Confidence 8877776655555655 6665432 11110 011223777 99 99999999999875
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.57 E-value=1.1e-06 Score=91.60 Aligned_cols=170 Identities=19% Similarity=0.182 Sum_probs=116.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-CCHHHHHHHHHHHcCCCCCCc--
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-YDFRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-- 271 (401)
+.++++.|... .+.+++.|..++|.|||||+..... .. ..=..+.|.++... -++..++..++..++...+..
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 34566766653 3679999999999999999999875 11 22356899998774 567888888888887543321
Q ss_pred ------cccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhC
Q 015752 272 ------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEME 340 (401)
Q Consensus 272 ------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~ 340 (401)
+.... +...+...+..-+. .++.++||||..- ++.--..+...+...+.+-..|||||+..-.......
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 01111 44455666666554 3689999999865 3443445555555566688999999987544333223
Q ss_pred CCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 341 NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 341 ~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
-.+.+ ++++..| .| +.+|+-++|....+
T Consensus 180 lr~~llEi~~~~L--rf--~~eE~~~fl~~~~~ 208 (894)
T COG2909 180 LRDELLEIGSEEL--RF--DTEEAAAFLNDRGS 208 (894)
T ss_pred ehhhHHhcChHhh--cC--ChHHHHHHHHHcCC
Confidence 45555 7777777 78 99999999988774
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.4e-06 Score=83.95 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=93.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.+......... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 78999999999998888653 2345678999999999999999987321111110 000000001111111100
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
..-........ ..++....+... ..+++-++|+|++.. +...++.+...+......+++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 00000000000 112221111111 124566999999977 5567888888777666677777766543 3333331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+....+++. |+ +.++..+.+...+.
T Consensus 168 -SRc~~~~~~------~l--~~~el~~~L~~~~~ 192 (363)
T PRK14961 168 -SRCLQFKLK------II--SEEKIFNFLKYILI 192 (363)
T ss_pred -hhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence 011223888 99 99999988888663
No 26
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=2.3e-07 Score=85.92 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL 285 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l 285 (401)
..++|+|++|+|||||++.+|++.... +|+.++|+.+... .++.++++.+...+-......+.... .........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999965554 8999999997665 78999999983332211110001110 111222222
Q ss_pred HHH-cCCceEEEEEeCCCC
Q 015752 286 RDY-LTNKKYFIVLDDVFD 303 (401)
Q Consensus 286 ~~~-L~~kr~LlVlDdv~~ 303 (401)
..+ -+|++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 258999999999853
No 27
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.5e-06 Score=80.03 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=80.4
Q ss_pred Ccccccccc-HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERG-REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~-~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
++|++.... +..+...... .....+.|+|.+|+|||+|++.+++ ........+.+++..+ ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~---- 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRL---- 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhH----
Confidence 666654433 3333333222 2334689999999999999999987 3333334556665422 11000
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChh--------
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPD-------- 332 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~-------- 332 (401)
.. .+. .+ .+.-+|||||+.. ....|......+.+ ..+|..||+||+...
T Consensus 85 --------------~~---~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 85 --------------RD---ALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred --------------HH---HHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 01 111 11 1335899999975 12334432222222 124667999998532
Q ss_pred -HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 333 -LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 333 -v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+.+.+ .....++++ ++ +.++-..++.+++.
T Consensus 146 dL~SRl--~~~~~~~l~------~~--~~e~~~~iL~~~a~ 176 (233)
T PRK08727 146 DLRSRL--AQCIRIGLP------VL--DDVARAAVLRERAQ 176 (233)
T ss_pred HHHHHH--hcCceEEec------CC--CHHHHHHHHHHHHH
Confidence 22222 122233889 99 99999999999774
No 28
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=1.2e-06 Score=92.83 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=85.1
Q ss_pred CccccccccHH---HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGRE---ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+++|.+..+. .+...+.. .....+.++|++|+||||||+.+++ .....|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH--------
Confidence 77899888774 35455543 3455678999999999999999998 4444441 111110 0000
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChh--HHh
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPD--LLA 335 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~--v~~ 335 (401)
+.........+.+ .+++.+|+||+++. +...++.|...+. .|+.++| ||.++. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111122222222 24678999999976 5666677766554 3555555 444432 222
Q ss_pred hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.. .....+ .++ +| +.++...++...+.
T Consensus 155 aL--~SR~~v~~l~------pL--s~edi~~IL~~~l~ 182 (725)
T PRK13341 155 AL--VSRSRLFRLK------SL--SDEDLHQLLKRALQ 182 (725)
T ss_pred Hh--hccccceecC------CC--CHHHHHHHHHHHHH
Confidence 22 122234 888 99 99999999998763
No 29
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=3.1e-06 Score=86.07 Aligned_cols=194 Identities=10% Similarity=-0.033 Sum_probs=106.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCe-EEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|-+..+..|...+..+ .-...+.++|++|+||||+|+.+++.......... ..+. .+..-.....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCC
Confidence 78899998888888777653 23457789999999999999999873221111100 0000 000000111111100
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE-EecCChhHHhhc
Q 015752 265 IPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF-ITVTDPDLLASL 337 (401)
Q Consensus 265 ~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~~ 337 (401)
.....+.+.... ..+++...+... +.+++-++|+|+++. ....|+.|...+.+....+.+| +||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000000000001 222222222221 235777899999988 6778899988887665666665 455555555444
Q ss_pred hhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 338 EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.. ....+.+. ++ +.++....+.+.+... +.... .+....|+ .|+|.+
T Consensus 176 ~S-Rc~~~ef~------~l--s~~el~~~L~~i~~~e---gi~ie---~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 176 IS-RCQRYDLR------RL--SFEEIFKLLEYITKQE---NLKTD---IEALRIIAYKSEGSA 223 (507)
T ss_pred Hh-cceEEEcc------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 11 12233888 99 9999999999888421 11111 23334566 676654
No 30
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.1e-06 Score=88.57 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=96.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+.....|..++..+. -...+.++|+.|+||||+|+.+.+...... |+.. ..+..-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCC
Confidence 789999999999999987542 246778999999999999998876321111 1110 01111111111111000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
..--+...... ..+++...+... ..+++-++|||++.. +...++.|...+-....+.++|++|.+. .+.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 00000000000 222222222211 235667899999987 6677888888777655667777777654 2322220
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.....+++. +| +.++....+...+.
T Consensus 167 -SRCq~feFk------pL--s~eEI~k~L~~Il~ 191 (702)
T PRK14960 167 -SRCLQFTLR------PL--AVDEITKHLGAILE 191 (702)
T ss_pred -Hhhheeecc------CC--CHHHHHHHHHHHHH
Confidence 122333888 99 99999998888774
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.4e-06 Score=87.15 Aligned_cols=190 Identities=11% Similarity=-0.019 Sum_probs=104.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCC
Confidence 778998888888888886532 3356689999999999999999874322222222233221110 0000000
Q ss_pred CCCCCccccCc-CH---HHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVIIGE-DY---QLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~---~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
........... .. .++...+... +.+++-++|||+++. ....++.|...+......+.+|++|.. ..+...+.
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000000000 12 2222222211 235667999999977 567788888888765556666555543 33322221
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.....+++. +| +.++....+.+.+......- . .+....|+ .|+|.+
T Consensus 165 -SRc~~~~f~------~l--s~~el~~~L~~i~~~egi~i--~----~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 165 -SRTQHFRFR------RL--TEEEIAGKLRRLLEAEGREA--E----PEALQLVARLADGAM 211 (504)
T ss_pred -cceEEEEec------CC--CHHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHcCCCH
Confidence 012233888 99 99999999998873211111 1 33445566 666654
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=3.4e-06 Score=81.18 Aligned_cols=176 Identities=12% Similarity=0.060 Sum_probs=98.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc--CCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~ 263 (401)
.+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+.+.... ..+.. .++.+ +...... .....+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~~-~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYG-EDWRE-NFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcC-Ccccc-ceEEeccccccchH-HHHHHHHH
Confidence 77999999999999988653 3445789999999999999999873211 11111 12222 2221111 11111111
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCC
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMEN 341 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 341 (401)
+....+ .....+-+|++|++.. .......|...+......+++|+++... .+..... ..
T Consensus 92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr 152 (319)
T PRK00440 92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR 152 (319)
T ss_pred HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence 111000 0012456899999866 3455567777666555566777766432 2211110 01
Q ss_pred CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
...+++. ++ ++++....+...+... +.... .+....++ .|+|.+
T Consensus 153 ~~~~~~~------~l--~~~ei~~~l~~~~~~~---~~~i~---~~al~~l~~~~~gd~ 197 (319)
T PRK00440 153 CAVFRFS------PL--KKEAVAERLRYIAENE---GIEIT---DDALEAIYYVSEGDM 197 (319)
T ss_pred hheeeeC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 1223888 99 9999988888877421 11111 33455566 677764
No 33
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=5.3e-06 Score=79.93 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=98.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc----CcccccCeEEEEEc-CCCCCHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN----HVKFYFDCHAWVRV-SLDYDFRRILDDI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~~~~i 260 (401)
.+++|-+..++.+..++..+ .-.....++|+.|+||||+|+.++... ....|.+...|... +....+.. ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 46789888888898888653 234577899999999999999887621 12345565555442 22233333 2233
Q ss_pred HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhhch
Q 015752 261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASLE 338 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~~ 338 (401)
.+.+.... ..+++=++|+|++.. +...++.|...+.+...++.+|++|.+.+. ...+.
T Consensus 82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 33322110 124555666776655 588899999999988889999988876542 22221
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
. ....+.+. ++ ++++....+.+.+
T Consensus 142 S-Rc~~~~~~------~~--~~~~~~~~l~~~~ 165 (313)
T PRK05564 142 S-RCQIYKLN------RL--SKEEIEKFISYKY 165 (313)
T ss_pred h-hceeeeCC------Cc--CHHHHHHHHHHHh
Confidence 1 11223888 89 9999888777654
No 34
>PLN03025 replication factor C subunit; Provisional
Probab=98.48 E-value=2.7e-06 Score=82.14 Aligned_cols=178 Identities=12% Similarity=0.071 Sum_probs=99.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|.++.++.|..++..+ +..-+.++|++|+||||+|+.+++... ...|. .++-++.+...... .+++++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHH
Confidence 77899888888888776543 344567899999999999999887321 11222 11222222222211 222222221
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCC
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENG 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~ 342 (401)
..... ..-.++.-+++||++.. .......|...+......+++|+++... .+.......+
T Consensus 89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc- 150 (319)
T PLN03025 89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC- 150 (319)
T ss_pred Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh-
Confidence 11000 00024567999999977 5555566665554434567777766443 2222221011
Q ss_pred cceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 343 EKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
..+++. ++ ++++....+...+.. ++..-. .+....|+ .|+|.+
T Consensus 151 ~~i~f~------~l--~~~~l~~~L~~i~~~---egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 151 AIVRFS------RL--SDQEILGRLMKVVEA---EKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred hcccCC------CC--CHHHHHHHHHHHHHH---cCCCCC---HHHHHHHHHHcCCCH
Confidence 223777 99 999999999988742 121111 33456677 777765
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=2.5e-06 Score=87.08 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=101.8
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|.++.++++.+|+.. .+...+.+.|+|++|+||||+|+.+++.. .|+ .+-++.+...+. ..+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHHHH
Confidence 7899999999999999864 22236788999999999999999999833 122 233344432222 223333332
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc----hhHHHHHhhCCCCCCCcEEEEecCChh-HHh-h
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS----EIWIDVEELLPDDENGSRVFITVTDPD-LLA-S 336 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~----~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~ 336 (401)
..... .....++-+||||++.. .. ..+..|...+.. .+..||+|+.+.. ... .
T Consensus 88 ~~~~~------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 88 AATSG------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred hhccC------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 21110 00113678999999976 21 345666665553 2345666664432 111 1
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.. .....+.+. ++ +.++....+.+.+... +.... .+....|+ .|+|.+
T Consensus 148 Lr-sr~~~I~f~------~~--~~~~i~~~L~~i~~~e---gi~i~---~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 148 LR-NACLMIEFK------RL--STRSIVPVLKRICRKE---GIECD---DEALKEIAERSGGDL 196 (482)
T ss_pred Hh-ccceEEEec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 10 112333888 89 9999998888877421 11112 34556677 777765
No 36
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.1e-06 Score=86.71 Aligned_cols=153 Identities=8% Similarity=0.011 Sum_probs=93.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-------------------ccCeEEEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVR 246 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 246 (401)
.+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++...-.. .|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 78999999999999888653 2345577899999999999999976211100 111222222
Q ss_pred cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752 247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV 324 (401)
Q Consensus 247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i 324 (401)
......+. +...+.+.+... ..+++-++|+|++.. +...++.|...+-+....+.+
T Consensus 95 aas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 95 AASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred cccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 11111111 222233333221 235677999999976 677788888888776556666
Q ss_pred EE-ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 325 FI-TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 325 iv-TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
|+ ||....+...+. ..-.+ ++. ++ +.++-...+.+.+
T Consensus 153 IL~Ttd~~kil~tI~--SRc~~~~f~------~L--s~~eI~~~L~~il 191 (546)
T PRK14957 153 ILATTDYHKIPVTIL--SRCIQLHLK------HI--SQADIKDQLKIIL 191 (546)
T ss_pred EEEECChhhhhhhHH--HheeeEEeC------CC--CHHHHHHHHHHHH
Confidence 64 554444443321 22233 888 99 9999888888765
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.4e-06 Score=79.47 Aligned_cols=172 Identities=18% Similarity=0.161 Sum_probs=112.6
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-e-EEEEEcCCCCCHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-C-HAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i~ 261 (401)
..+.+|+.+++++...|.. .+....-+.|.|.+|.|||+.++.+.. +++.... . +++|+.....+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 5689999999999998865 222333488999999999999999998 5544432 2 78899988999999999999
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHcC--CceEEEEEeCCCC--CchhHHHHHhhCCCCC-CCcEE--EEecCChhHH
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD--DSEIWIDVEELLPDDE-NGSRV--FITVTDPDLL 334 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~-~gs~i--ivTTR~~~v~ 334 (401)
.+++.... ......+....+.+.+. ++.++||||++.. +... +-|...+.... ..++| |..+-+....
T Consensus 95 ~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 95 NKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 99974321 22255566666666663 6899999999976 2221 23322222222 13443 3344444333
Q ss_pred hhchhC-----CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 335 ASLEME-----NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 335 ~~~~~~-----~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
..+... +..++..+ |- +.+|-...+..++-
T Consensus 170 ~~ld~rv~s~l~~~~I~F~------pY--~a~el~~Il~~R~~ 204 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFP------PY--TAEELYDILRERVE 204 (366)
T ss_pred HHhhhhhhhccCcceeeeC------CC--CHHHHHHHHHHHHH
Confidence 322100 22334455 78 88999999998873
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.6e-06 Score=84.74 Aligned_cols=175 Identities=9% Similarity=-0.015 Sum_probs=95.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.....+.-.... + .+..+..-.....|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHcCCC
Confidence 789999999999999887532 234668899999999999998876321100000000 0 0001111111111111000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~ 338 (401)
.+.-+.+.... ..+++.+.+.+. ..++.-++|||++.. +...++.|...+-....++++|+ ||....+...+.
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 00000000001 233333333222 135667999999987 67788888888766555566554 555555544441
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.++ ..+.+. ++ +.++..+.+.+.+.
T Consensus 173 SRC-q~f~f~------~l--s~eei~~~L~~Il~ 197 (700)
T PRK12323 173 SRC-LQFNLK------QM--PPGHIVSHLDAILG 197 (700)
T ss_pred HHH-HhcccC------CC--ChHHHHHHHHHHHH
Confidence 111 333777 88 99999988888764
No 39
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.7e-06 Score=88.50 Aligned_cols=170 Identities=10% Similarity=-0.013 Sum_probs=95.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.......... ..+..-.....+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhcCCC
Confidence 78999999999999888653 22345579999999999999999873211111000 00000000001110000
Q ss_pred CCCC--Cccc-cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSR--VSVI-IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~--~~~~-~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
.... .... ..- +...+...+... ..+++-++|||++.. ....++.|+..+-......++|++|.+ ..+...+.
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 0000 0000 000 222222222211 246778999999987 677888888877665556666665544 44443331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
. ....+++. +| +.++....+.+.+.
T Consensus 168 S-RCq~f~fk------pL--s~eEI~~~L~~il~ 192 (944)
T PRK14949 168 S-RCLQFNLK------SL--TQDEIGTQLNHILT 192 (944)
T ss_pred H-hheEEeCC------CC--CHHHHHHHHHHHHH
Confidence 1 11333888 99 99999999988764
No 40
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.7e-06 Score=83.68 Aligned_cols=174 Identities=11% Similarity=-0.008 Sum_probs=94.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 264 (401)
.+++|-+..++.|..++..+. -...+.++|++|+||||+|..+.+...-...+....|.. ...++..-.....+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 788998888888888886532 234577899999999999998876322211111111110 011111111111111111
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752 265 IPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS 336 (401)
Q Consensus 265 ~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~ 336 (401)
..+-........ ..+++.+. .+.+ .+++-++|+|++.. ....++.|...+.+....+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000000000000 12333322 2222 34566889999976 5668888888887666667666554 44444433
Q ss_pred chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 337 LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 337 ~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.. ....+ ++. ++ ++++....+...+
T Consensus 174 l~--sR~~~v~f~------~l--~~~ei~~~l~~~~ 199 (397)
T PRK14955 174 IA--SRCQRFNFK------RI--PLEEIQQQLQGIC 199 (397)
T ss_pred HH--HHHHHhhcC------CC--CHHHHHHHHHHHH
Confidence 21 11223 777 89 9999888888776
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7.1e-06 Score=83.03 Aligned_cols=168 Identities=10% Similarity=0.016 Sum_probs=88.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+.....|...+..+ .-...+.++|++|+||||+|+.+++....... .. ..++..-.....+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHhcCCC
Confidence 78999888877777766543 23356789999999999999999763211110 00 000000001111100000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH-----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhc
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY-----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASL 337 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~-----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~ 337 (401)
..........+ ..+.+. .+.+. ..+++-++|+|++.. .....+.|...+.+....+.+|++|.+ ..+...+
T Consensus 86 ~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 86 MDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 00000000000 122211 11111 235667999999976 455667777777654444555444444 3443333
Q ss_pred hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...-.+ .+. ++ +.++....+.+.+.
T Consensus 165 --~SR~~vv~f~------~l--~~~el~~~L~~i~~ 190 (472)
T PRK14962 165 --ISRCQVIEFR------NI--SDELIIKRLQEVAE 190 (472)
T ss_pred --hcCcEEEEEC------Cc--cHHHHHHHHHHHHH
Confidence 122334 888 99 99998888888773
No 42
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.40 E-value=4.2e-07 Score=88.21 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC--CHHHHHHHHHHHcCCCCCCcccc
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY--DFRRILDDIIKSVIPPSRVSVII 274 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~ 274 (401)
++++.+..-..+ .-..|+|++|+||||||+.+|++.... +|+.++|+.+.+.. .+.++++.+...+-...... ..
T Consensus 158 rvID~l~PIGkG-QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~-~~ 234 (416)
T PRK09376 158 RIIDLIAPIGKG-QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PA 234 (416)
T ss_pred eeeeeecccccC-ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC-CH
Confidence 455555442222 346789999999999999999965554 89999999988877 67777777763221111000 00
Q ss_pred Cc---CHHHHHHHHHHH-cCCceEEEEEeCCCC
Q 015752 275 GE---DYQLKKSILRDY-LTNKKYFIVLDDVFD 303 (401)
Q Consensus 275 ~~---~~~~l~~~l~~~-L~~kr~LlVlDdv~~ 303 (401)
.. ........-..+ ..|+++||++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 00 001111111222 368999999999853
No 43
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.39 E-value=1.7e-06 Score=81.97 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
+.+..+.+||++|+||||||+.+.+..+-.. ..||.+|..-.-..-++.|+++... .
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------------~ 216 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------------E 216 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------------H
Confidence 4577788999999999999999998443333 5677776655444444555544221 1
Q ss_pred HHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHH
Q 015752 287 DYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHE 362 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~e 362 (401)
..+.++|..|.+|.|.. +.. +--.+||.-.+|+-++| ||.+++.--....-..=.+ .|+ +| ..++
T Consensus 217 ~~l~krkTilFiDEiHRFNks---QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLe------kL--~~n~ 285 (554)
T KOG2028|consen 217 KSLTKRKTILFIDEIHRFNKS---QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLE------KL--PVNA 285 (554)
T ss_pred HhhhcceeEEEeHHhhhhhhh---hhhcccceeccCceEEEecccCCCccchhHHHHhccceeEec------cC--CHHH
Confidence 23457899999999966 332 23345676677887776 8888753211100022345 889 99 9999
Q ss_pred HHHHHHHh
Q 015752 363 AWQFFILH 370 (401)
Q Consensus 363 a~~Lf~~~ 370 (401)
-..++..-
T Consensus 286 v~~iL~ra 293 (554)
T KOG2028|consen 286 VVTILMRA 293 (554)
T ss_pred HHHHHHHH
Confidence 88888874
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.37 E-value=5e-06 Score=75.98 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=81.8
Q ss_pred Ccccc--ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISH--FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+|++ .+..++.+.+++.. .....+.|+|++|+|||+||+.+++. ........++++.+.-.+ ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~--- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD--- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH---
Confidence 55553 34456777776543 34567889999999999999999873 322333445554432110 00
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cch-hH-HHHHhhCCC-CCCCcEEEEecCChh-------
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSE-IW-IDVEELLPD-DENGSRVFITVTDPD------- 332 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~~------- 332 (401)
..+...+.+ .-+|||||+.. +.. .| ..+...+.. ...+..+|+||+...
T Consensus 82 -------------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 82 -------------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred -------------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 001111222 23899999976 221 33 344444332 123457888888543
Q ss_pred --HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 333 --LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 333 --v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+...+ .....+++. ++ +.++-..++...+
T Consensus 142 ~~L~~r~--~~~~~i~l~------~l--~~~e~~~~l~~~~ 172 (226)
T TIGR03420 142 PDLRTRL--AWGLVFQLP------PL--SDEEKIAALQSRA 172 (226)
T ss_pred HHHHHHH--hcCeeEecC------CC--CHHHHHHHHHHHH
Confidence 12222 112334889 99 9999999998765
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.2e-06 Score=84.33 Aligned_cols=173 Identities=8% Similarity=0.017 Sum_probs=94.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|-+..+..|.+++..+ .-...+.++|+.|+||||+|+.+.+...-.... .... ...+..-.....|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence 78999888888888888653 234567899999999999999885421110000 0000 0011111111222110
Q ss_pred cCCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752 264 VIPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS 336 (401)
Q Consensus 264 l~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~ 336 (401)
-..+..+.+.... ..+++.+.+... ..++.-++|||+++. +...++.|...+-+....+++|++| ....+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000000000011 222332222221 124556899999988 7778888888887655566666554 44444433
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+. .....+++. +| +.++....+.+.+.
T Consensus 171 Il-SRc~~~~f~------~L--s~eei~~~L~~i~~ 197 (618)
T PRK14951 171 VL-SRCLQFNLR------PM--APETVLEHLTQVLA 197 (618)
T ss_pred HH-HhceeeecC------CC--CHHHHHHHHHHHHH
Confidence 31 112333888 99 99999888888764
No 46
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.36 E-value=5.8e-06 Score=81.40 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=88.9
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|+++.+++|.+.+... -...+-+.++|++|+|||+||+.+++ .....| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----H
Confidence 78899999999998877421 12345688999999999999999998 444333 22211 1
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C-----------ch---hHHHHHhhCCC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D-----------SE---IWIDVEELLPD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~- 317 (401)
.+ .....+ ........+.+.. ...+.+|+||+++. . .. .+..+...+..
T Consensus 191 ~l----~~~~~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 191 EL----VRKYIG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred HH----HHHhhh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 11 111100 1111222222222 34678999999864 0 11 22233333321
Q ss_pred -CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 318 -DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
...+.+||.||......... ..+..+.. .++ +. +.++..++|..++..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~------~P--~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP------LP--DFEGRLEILKIHTRK 308 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence 13466788888765422111 00122334 778 88 999999999988754
No 47
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=6.5e-06 Score=75.95 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=71.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
...+.|+|++|+|||+|++.+++ .....-..+.++++..... ...+..+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~--- 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW------------------------FVPEVLEGM--- 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh------------------------hhHHHHHHh---
Confidence 45788999999999999999987 3332233455665532100 001111111
Q ss_pred cCCceEEEEEeCCCC-C-chhHHHHH-hhCCC-CCCC-cEEEEecCChh---------HHhhchhCCCcce-ecccccCC
Q 015752 289 LTNKKYFIVLDDVFD-D-SEIWIDVE-ELLPD-DENG-SRVFITVTDPD---------LLASLEMENGEKI-RLDSVLFG 353 (401)
Q Consensus 289 L~~kr~LlVlDdv~~-~-~~~~~~l~-~~l~~-~~~g-s~iivTTR~~~---------v~~~~~~~~~~~~-~l~~~~~~ 353 (401)
.. --+|+|||+.. . ...|+... ..+.. ...| .++|+||+... +.+.+ ....+ +++
T Consensus 96 -~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl---~~g~~~~l~----- 165 (235)
T PRK08084 96 -EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL---DWGQIYKLQ----- 165 (235)
T ss_pred -hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH---hCCceeeec-----
Confidence 11 24889999965 1 24454322 22211 1123 47999998653 23333 33345 888
Q ss_pred CCCCCChHHHHHHHHHhhC
Q 015752 354 GPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 354 ~~L~~~~~ea~~Lf~~~a~ 372 (401)
++ +.++-.+++.+++.
T Consensus 166 -~~--~~~~~~~~l~~~a~ 181 (235)
T PRK08084 166 -PL--SDEEKLQALQLRAR 181 (235)
T ss_pred -CC--CHHHHHHHHHHHHH
Confidence 99 99999999988774
No 48
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=7.7e-06 Score=84.08 Aligned_cols=170 Identities=9% Similarity=0.001 Sum_probs=94.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+..++.+.+++..+ .-...+.++|+.|+||||+|+.+.+... |.-|.... .+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHHcCCC
Confidence 78999999999999988653 2345678999999999999999876221 11122111 1111112222211111
Q ss_pred CCCCCccccCc-CHHH---HHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQL---KKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~---l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~ 338 (401)
..-........ ..++ +...+... ..+++-++|+|++.. ....+..|...+-.....+.+|++| ....+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00000000001 2222 22222211 123444699999976 5677888888777655566665544 4444433321
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
. ....+++. ++ ++++....+...+.
T Consensus 168 S-Rcq~ieF~------~L--s~~eL~~~L~~il~ 192 (605)
T PRK05896 168 S-RCQRYNFK------KL--NNSELQELLKSIAK 192 (605)
T ss_pred h-hhhhcccC------CC--CHHHHHHHHHHHHH
Confidence 1 12233888 99 99999888888763
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1e-05 Score=81.77 Aligned_cols=154 Identities=8% Similarity=0.002 Sum_probs=93.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-------------------cccCeEEEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-------------------FYFDCHAWVR 246 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 246 (401)
.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.....-. ..+..++.+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 789998888888877776532 23478899999999999998886511000 0111223333
Q ss_pred cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752 247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV 324 (401)
Q Consensus 247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i 324 (401)
.+....+.+ .++++ +..... +.+++-++|+|++.. ....++.|...+-+....+++
T Consensus 92 aas~~~vdd-IR~Ii---------------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 92 AASNTSVDD-IKVIL---------------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred cccCCCHHH-HHHHH---------------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 322222211 11122 111111 135666899999976 567788888888776667766
Q ss_pred EEec-CChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 325 FITV-TDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 325 ivTT-R~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
|++| ....+...+. ..-.. .+. ++ +.++....+.+.+.
T Consensus 150 Ilatte~~Kl~~tI~--SRc~~~~f~------~l--~~~el~~~L~~ia~ 189 (491)
T PRK14964 150 ILATTEVKKIPVTII--SRCQRFDLQ------KI--PTDKLVEHLVDIAK 189 (491)
T ss_pred EEEeCChHHHHHHHH--Hhheeeecc------cc--cHHHHHHHHHHHHH
Confidence 6555 4445544431 22233 888 89 99999888888874
No 50
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.4e-05 Score=83.26 Aligned_cols=197 Identities=9% Similarity=-0.020 Sum_probs=104.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 264 (401)
.+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......++...|.. ....+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 78999888888888887643 2334578999999999999988876322211111111111 001111111111111111
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhc
Q 015752 265 IPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASL 337 (401)
Q Consensus 265 ~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~ 337 (401)
..+-........ ..+++...+... ..+++-++|+|++.. .....+.|...+-+....+.+|+ |++...+...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000000000001 233333322222 234566789999877 56677888888877655666554 54444444333
Q ss_pred hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.....+ ++. ++ +.++....+.+.+...... .. .+.+..|+ .|+|.+
T Consensus 175 --~SRc~~vef~------~l--~~~ei~~~L~~i~~~egi~--I~----~eal~~La~~s~Gdl 222 (620)
T PRK14954 175 --ASRCQRFNFK------RI--PLDEIQSQLQMICRAEGIQ--ID----ADALQLIARKAQGSM 222 (620)
T ss_pred --HhhceEEecC------CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHhCCCH
Confidence 122334 888 99 9998888887766321000 11 34455666 677654
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.31 E-value=2.8e-05 Score=76.11 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=91.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc--------------------cccCeEEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK--------------------FYFDCHAWV 245 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv 245 (401)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.....-. .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 788999999999999886532 34577899999999999998886531100 01221 222
Q ss_pred EcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752 246 RVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 246 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (401)
..+...... +...+...+... ..+++-++|+|++.. ....++.+...+......+.
T Consensus 92 ~~~~~~~~~----------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 92 DAASNNGVD----------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred eccccCCHH----------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 211111111 111222221111 124556889999866 45667788888766556677
Q ss_pred EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|++|.+.. +...+. .....+++. ++ ++++....+.+.+.
T Consensus 150 lIl~~~~~~~l~~~l~-sr~~~~~~~------~~--~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 150 FILATTEPHKIPATIL-SRCQRFDFK------RI--PLEDIVERLKKILD 190 (355)
T ss_pred EEEEeCCHHHHHHHHH-hheeEEEcC------CC--CHHHHHHHHHHHHH
Confidence 777765544 333321 111223777 88 99998888888763
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-05 Score=83.21 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=91.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+......... ...+..-.....+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-------~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-------GEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-------CCCCcccHHHHHHhccCc
Confidence 789999999999999987532 235678999999999999998876311111100 000000000000000000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
....+...... ..+.+...+... ..+++-++|||++.. +......|...+-.....+++|++|.+. .+...+.
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00000000000 222222222211 235667899999977 5556677777775544566677666543 3322220
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+....+.+. ++ +.++....+.+.+.
T Consensus 168 -SRC~~f~f~------~L--s~eeI~~~L~~Il~ 192 (709)
T PRK08691 168 -SRCLQFVLR------NM--TAQQVADHLAHVLD 192 (709)
T ss_pred -HHHhhhhcC------CC--CHHHHHHHHHHHHH
Confidence 011233777 88 99998888888774
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=3.9e-05 Score=68.19 Aligned_cols=88 Identities=13% Similarity=0.248 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFF 367 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf 367 (401)
+.+-++|+|++.. +...++.|...+.+....+.+|++|++. .+...+. ....+ .+. ++ +.++....+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~~~~------~~--~~~~~~~~l 164 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVLPFP------PL--SEEALLQWL 164 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEeeCC------CC--CHHHHHHHH
Confidence 5667899999977 5667788888887766667777766654 3322221 22234 888 99 999988888
Q ss_pred HHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 368 ILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 368 ~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
.+. | .. .+.+..|+ .|+|.+.
T Consensus 165 ~~~-g---i~--------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 165 IRQ-G---IS--------EEAAELLLALAGGSPG 186 (188)
T ss_pred HHc-C---CC--------HHHHHHHHHHcCCCcc
Confidence 776 2 11 34567888 8888764
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.2e-05 Score=77.64 Aligned_cols=169 Identities=10% Similarity=-0.005 Sum_probs=90.9
Q ss_pred CccccccccHHHHHHHHhcCCC--------CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSS--------GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 257 (401)
.+++|-+..++.|.+.+..+.. -..-+.++|++|+|||++|+.+.....-...- ..++..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--------~~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--------EPGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--------CCCCCCCHHH
Confidence 6789988889999998875421 24568899999999999999886521110000 0000000000
Q ss_pred HHHHHHcCCCCCCc-cccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752 258 DDIIKSVIPPSRVS-VIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 258 ~~i~~~l~~~~~~~-~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 330 (401)
..+.....+.-... +.... ..+++...+... ..+++-++++|++.. +....+.|...+-....++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 11100000000000 00000 222222211111 124556888899977 666667777777665566766666665
Q ss_pred h-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 331 P-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 331 ~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
. .+...+.. ....+.+. ++ +.++..+.+.+..
T Consensus 157 ~~~llpTIrS-Rc~~i~f~------~~--~~~~i~~~L~~~~ 189 (394)
T PRK07940 157 PEDVLPTIRS-RCRHVALR------TP--SVEAVAEVLVRRD 189 (394)
T ss_pred hHHChHHHHh-hCeEEECC------CC--CHHHHHHHHHHhc
Confidence 4 44444321 12333888 99 9999988887544
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2e-05 Score=79.00 Aligned_cols=191 Identities=9% Similarity=-0.033 Sum_probs=102.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-..... .. ....... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~--pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NE--PCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-cc--ccCCCcH----HHHHHccCC
Confidence 789999988888888887532 234578999999999999999987321111000 00 0000011 111211111
Q ss_pred CCCCCccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752 266 PPSRVSVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~ 338 (401)
....+...... +..++...+... ..++.-++|+|++.. +...++.|...+-.......+|+ ||....+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 11000000001 222233333221 235667999999987 77788888887765444555554 444444433331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
. ....+.+. ++ +.++..+.+.+.+.. ++..-. .+....|+ .++|.+
T Consensus 170 S-RCq~~~f~------~l--s~~~i~~~L~~i~~~---Egi~~e---~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 170 S-RCQDFIFK------KV--PLSVLQDYSEKLCKI---ENVQYD---QEGLFWIAKKGDGSV 216 (484)
T ss_pred h-hhheeeec------CC--CHHHHHHHHHHHHHH---cCCCCC---HHHHHHHHHHcCChH
Confidence 1 11223777 89 998888888887632 111111 33445566 666654
No 56
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.8e-05 Score=82.35 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=95.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++||-+..+..|...+..+. -...+.++|..|+||||+|+.+.+...-...+ .+.++..-.....|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 789999999998888886532 23456799999999999999987632111100 0011111122222211100
Q ss_pred CCCCCccc---cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVI---IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~---~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
.+..+... ..- +..++...+... ..+++-++|||++.. +...++.|...+-......++|++|.+ +.+...+.
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 00000000 000 222222222221 246777999999987 677788888777665556666554444 44443331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
. ....+++. +| +.++....+.+.+
T Consensus 168 S-RC~~~~f~------~L--s~~ei~~~L~~il 191 (647)
T PRK07994 168 S-RCLQFHLK------AL--DVEQIRQQLEHIL 191 (647)
T ss_pred h-hheEeeCC------CC--CHHHHHHHHHHHH
Confidence 1 12333888 99 9999999988876
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.2e-05 Score=79.59 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=90.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|..++..+. -...+.++|++|+||||+|+.+.......... + ..++..-.....+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~------~-~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV------T-ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C-CCCCCCCHHHHHHhcCCC
Confidence 788999999999988887532 23456789999999999999987632111100 0 001100000011100000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
........... ..+++...+... ..+++-++|+|++.. .....+.|...+-+....+.+|++|.+. .+...+.
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH
Confidence 00000000001 222222222111 135677999999977 5667788888877655566666655443 3322210
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.....+++. ++ +.++....+.+.+
T Consensus 168 -SRc~~~~f~------~l--~~~~i~~~L~~il 191 (527)
T PRK14969 168 -SRCLQFNLK------QM--PPPLIVSHLQHIL 191 (527)
T ss_pred -HHHHHHhcC------CC--CHHHHHHHHHHHH
Confidence 011222777 88 8888888887766
No 58
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.2e-05 Score=77.32 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=88.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc------ccccCeE-EEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV------KFYFDCH-AWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~-~wv~vs~~~~~~~~~~ 258 (401)
.+++|.+...+.+.+++..+ .-...+.++|++|+||||+|+.+.+...- ...|... +-+.......+ +.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 78899999999999988753 23457889999999999999998763211 0112111 11111111111 1111
Q ss_pred HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752 259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS 336 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~ 336 (401)
.+++.+... -..+++-++++|++.. ....++.+...+......+.+|++| ....+...
T Consensus 95 ~l~~~~~~~--------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 95 NLIDQVRIP--------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHhhc--------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 222211100 0124556899999865 4556777877775544455565554 33333222
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.. .....++.. ++ ++++....+...+.
T Consensus 155 l~-sr~~~v~~~------~~--~~~~l~~~l~~~~~ 181 (367)
T PRK14970 155 IL-SRCQIFDFK------RI--TIKDIKEHLAGIAV 181 (367)
T ss_pred HH-hcceeEecC------Cc--cHHHHHHHHHHHHH
Confidence 21 111223788 88 99998888888763
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.8e-05 Score=79.49 Aligned_cols=169 Identities=9% Similarity=-0.008 Sum_probs=91.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++||-+..++.|.+++..+. -...+.++|++|+||||+|+.+.+...-...+. ..+++.-.....|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence 789999999999999986532 234578999999999999998876321111110 000110011111100000
Q ss_pred CCCCCccccCc-CHHHHHHHHHH---H-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRD---Y-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~---~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
.+.-+.+.... ..+++...+.. . ..++.-++|+|++.. .....+.|...+-+....+++|++|.+. .+...+.
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~ 167 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL 167 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH
Confidence 00000000001 22222222211 1 135666899999987 6777888888877766677777655443 3332221
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
. ....+++. ++ +.++-...+...+
T Consensus 168 S-Rc~~~~f~------~l--~~~~i~~~l~~il 191 (509)
T PRK14958 168 S-RCLQFHLA------QL--PPLQIAAHCQHLL 191 (509)
T ss_pred H-HhhhhhcC------CC--CHHHHHHHHHHHH
Confidence 0 11222677 88 8888777766665
No 60
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=4.5e-06 Score=81.49 Aligned_cols=93 Identities=10% Similarity=-0.003 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL 285 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l 285 (401)
..++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-......+.... -........
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 468899999999999999999854333 7999999998865 78899999885443322111000000 011122222
Q ss_pred HHH-cCCceEEEEEeCCCC
Q 015752 286 RDY-LTNKKYFIVLDDVFD 303 (401)
Q Consensus 286 ~~~-L~~kr~LlVlDdv~~ 303 (401)
..+ -+|++.+|++|.+..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 268999999999853
No 61
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3e-05 Score=80.62 Aligned_cols=194 Identities=8% Similarity=-0.084 Sum_probs=103.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+......... ...+ ..+..-...+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhcC
Confidence 789999999999999887532 344678999999999999999976321111100 0000 000100111112111
Q ss_pred cCCCCCCccccCc-CHHH---HHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhh
Q 015752 264 VIPPSRVSVIIGE-DYQL---KKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLAS 336 (401)
Q Consensus 264 l~~~~~~~~~~~~-~~~~---l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~ 336 (401)
...+-........ ..++ +.+.+... ..+++-++|+|++.. +....+.|...+-+...++++|+ ||....+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 1110000000001 2222 22222211 124556799999976 56677888887776556666655 4444444433
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
+.. ....+.+. ++ +.++....+.+.+... +.... .+....|+ .|+|++
T Consensus 179 I~S-Rcq~~~f~------~l--~~~el~~~L~~i~~ke---gi~i~---~eAl~lIa~~a~Gdl 227 (598)
T PRK09111 179 VLS-RCQRFDLR------RI--EADVLAAHLSRIAAKE---GVEVE---DEALALIARAAEGSV 227 (598)
T ss_pred HHh-heeEEEec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 311 11233788 89 9999998888876421 11111 23445556 666654
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.19 E-value=1.5e-05 Score=71.68 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=86.8
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+|+|-+.-++.+.-.+.. ..+.+.-+.+||++|+||||||.-+.+ .....|. +++.+. ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~---------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE---------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC-------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh----------
Confidence 8999988888776555432 345677888999999999999999998 4444442 222211 11
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC--------C-----------CCc
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD--------E-----------NGS 322 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~--------~-----------~gs 322 (401)
...++...+.. + +++-+|.+|.++. +...-+.|..++-++ + +-+
T Consensus 88 --------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 88 --------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11222222222 1 2345777788876 443334444332221 1 122
Q ss_pred EEEEecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752 323 RVFITVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY 398 (401)
Q Consensus 323 ~iivTTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~ 398 (401)
-|=.|||...+..-.. ....-+ +++ .. +.+|-.++..+.+.-...+- -++.+.+|+ .|.|-
T Consensus 152 ligATTr~g~ls~pLr-dRFgi~~~l~------~Y--~~~el~~Iv~r~a~~l~i~i------~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLR-DRFGIVLRLE------FY--SEEELAKIVKRSARILNIEI------DEDAAEEIARRSRGT 214 (233)
T ss_dssp EEEEESSGCCTSHCCC-TTSSEEEE------------THHHHHHHHHHCCHCTT-EE-------HHHHHHHHHCTTTS
T ss_pred EeeeeccccccchhHH-hhcceecchh------cC--CHHHHHHHHHHHHHHhCCCc------CHHHHHHHHHhcCCC
Confidence 3445888655544331 123334 788 88 99999999988774322221 267788888 88774
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.2e-05 Score=83.07 Aligned_cols=167 Identities=8% Similarity=-0.055 Sum_probs=93.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-..... ...+..-...+.|... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g-~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPG-G 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcC-C
Confidence 789999999999999887532 234678999999999999999876322111110 0001100111111100 0
Q ss_pred CCCCCc---cccCc-CHHHHHH---HHHH-HcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHh
Q 015752 266 PPSRVS---VIIGE-DYQLKKS---ILRD-YLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLA 335 (401)
Q Consensus 266 ~~~~~~---~~~~~-~~~~l~~---~l~~-~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~ 335 (401)
...... ..... ..+++.. .+.. -..++.-++|||++.. ....++.|...+-+....+.+|++| ....+..
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 000000 00000 2222222 2111 1235566889999987 6778888888888766666666544 4444544
Q ss_pred hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.+. ..-.+ ++. ++ +.++..+.+.+.+
T Consensus 166 TIr--SRc~~v~F~------~l--~~~~l~~~L~~il 192 (824)
T PRK07764 166 TIR--SRTHHYPFR------LV--PPEVMRGYLERIC 192 (824)
T ss_pred HHH--hheeEEEee------CC--CHHHHHHHHHHHH
Confidence 431 22233 777 88 8888888887765
No 64
>CHL00181 cbbX CbbX; Provisional
Probab=98.19 E-value=7.2e-05 Score=71.02 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=84.4
Q ss_pred CccccccccHHHHHHHH---hc-------C---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752 186 LDISHFERGREELFDLL---IE-------G---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD 252 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (401)
.+++|.+..+++|.++. .- + ......+.++|++|+||||+|+.+++.......-...-|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---
Confidence 35788777766554432 11 0 11223477899999999999999976211111111112444431
Q ss_pred HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCc
Q 015752 253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGS 322 (401)
Q Consensus 253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs 322 (401)
..+ .....+. ........+.+ .. .-+|+||++.. ..+..+.|...+.+...+.
T Consensus 100 -~~l----~~~~~g~---------~~~~~~~~l~~-a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~ 162 (287)
T CHL00181 100 -DDL----VGQYIGH---------TAPKTKEVLKK-AM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL 162 (287)
T ss_pred -HHH----HHHHhcc---------chHHHHHHHHH-cc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 122 2222111 11222222222 22 24899999853 0223344555555555567
Q ss_pred EEEEecCChhHHhhc------hhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 323 RVFITVTDPDLLASL------EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 323 ~iivTTR~~~v~~~~------~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+||+++....+.... .......+.++ ++ +.+|..+++...+.
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~------~~--t~~el~~I~~~~l~ 210 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFP------DY--TPEELLQIAKIMLE 210 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC------Cc--CHHHHHHHHHHHHH
Confidence 777787654432211 01122334788 99 99999999998873
No 65
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.6e-05 Score=81.43 Aligned_cols=192 Identities=8% Similarity=-0.013 Sum_probs=104.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........ .-...++.......|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCC
Confidence 789999999999988887532 23556799999999999999998632111100 00011222223333332221
Q ss_pred CCCCCccccCc-CHHHHH---HHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKK---SILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~---~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
...-+...... ..+++. ..+... ..+++-++|||++.. ..+..+.|...+.+....+.+|++|.+ ..+...+.
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 11000000011 222222 222111 124667899999976 466778888777765556666665543 33433321
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.....+.+. ++ +.++....+.+.+...... .. .+....|+ .|+|.+
T Consensus 169 -SR~~~i~f~------~l--~~~el~~~L~~~a~~egl~--i~----~eal~~La~~s~Gdl 215 (585)
T PRK14950 169 -SRCQRFDFH------RH--SVADMAAHLRKIAAAEGIN--LE----PGALEAIARAATGSM 215 (585)
T ss_pred -hccceeeCC------CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHcCCCH
Confidence 111223777 88 8988888888876421111 11 34455666 666654
No 66
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.2e-05 Score=78.47 Aligned_cols=170 Identities=9% Similarity=-0.039 Sum_probs=94.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-.+..+ ..+++.-.....|...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 78999999999999988753 2344578999999999999999876321111100 001111111111111000
Q ss_pred CCCCC--ccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhh
Q 015752 266 PPSRV--SVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLAS 336 (401)
Q Consensus 266 ~~~~~--~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~ 336 (401)
....- .+.... +..++.+.+... ..+++-++|+|++.. .....+.|...+......+.+|+ ||....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00000 000000 222222222221 135666899999977 67788888888877655666555 5554555444
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+.. ....+++. ++ +.++..+.+.+.+.
T Consensus 165 I~S-Rc~~~~F~------~l--~~~~i~~~L~~i~~ 191 (584)
T PRK14952 165 IRS-RTHHYPFR------LL--PPRTMRALIARICE 191 (584)
T ss_pred HHH-hceEEEee------CC--CHHHHHHHHHHHHH
Confidence 311 12333788 88 99988888877663
No 67
>PRK09087 hypothetical protein; Validated
Probab=98.15 E-value=2.3e-05 Score=71.74 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
.+.+.|+|++|+|||+|++.+++... ..+++.. .+..+++. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-------------------------~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-------------------------A 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-------------------------h
Confidence 45689999999999999999887321 1133221 11111111 1
Q ss_pred cCCceEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCC---------hhHHhhchhCCCcce-ecccccCCCC
Q 015752 289 LTNKKYFIVLDDVFD---DSEIWIDVEELLPDDENGSRVFITVTD---------PDLLASLEMENGEKI-RLDSVLFGGP 355 (401)
Q Consensus 289 L~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~~-~l~~~~~~~~ 355 (401)
+.+ -+|++||+.. +.+.+-.+...+.+ .|..||+|++. +++...+ ....+ +++ +
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl---~~gl~~~l~------~ 152 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRL---KAATVVEIG------E 152 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHH---hCCceeecC------C
Confidence 111 2788899954 23333334333332 36779998874 3334443 33445 999 9
Q ss_pred CCCChHHHHHHHHHhhC
Q 015752 356 LIRLKHEAWQFFILHYG 372 (401)
Q Consensus 356 L~~~~~ea~~Lf~~~a~ 372 (401)
+ +.++-.+++.+++.
T Consensus 153 p--d~e~~~~iL~~~~~ 167 (226)
T PRK09087 153 P--DDALLSQVIFKLFA 167 (226)
T ss_pred C--CHHHHHHHHHHHHH
Confidence 9 99999999999884
No 68
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6e-05 Score=78.81 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=102.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---------------------ccccCeEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---------------------KFYFDCHAW 244 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~w 244 (401)
.+++|-+...+.|..++..+ .-...+.++|+.|+||||+|+.+...... ..+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 78999999999999988753 23456789999999999999887652210 012221 11
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752 245 VRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 245 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (401)
+..+....+.. ++.++.++... - ..+++=++|+|++.. +...++.|...+.....++.
T Consensus 95 ld~~~~~~vd~-Ir~li~~~~~~-------------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 95 LDAASNNSVDD-IRNLIEQVRIP-------------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred ecccccCCHHH-HHHHHHHHhhC-------------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 11111111111 11111211111 0 124556889999877 67778888888877666666
Q ss_pred EEE-ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 324 VFI-TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 324 iiv-TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
+|+ ||....+...+ ...-.+ ++. ++ ++++....+.+.+... +.... .+....|+ .|+|.+
T Consensus 154 fIL~tt~~~kIl~tI--~SRc~iv~f~------~l--s~~ei~~~L~~ia~~e---gi~i~---~~al~~La~~s~gdl 216 (614)
T PRK14971 154 FILATTEKHKILPTI--LSRCQIFDFN------RI--QVADIVNHLQYVASKE---GITAE---PEALNVIAQKADGGM 216 (614)
T ss_pred EEEEeCCchhchHHH--HhhhheeecC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 655 54545554443 122233 788 99 9999988888876421 11111 23445666 667654
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.12 E-value=2.6e-05 Score=75.11 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=83.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++. ... ....++.+. ... ..++..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHHHHHH
Confidence 78899999999999988753 34567778999999999999999873 221 123333333 111 11111111110
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCC
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENG 342 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~ 342 (401)
.. . -+.+.+-+||+|++.. . ......+...+.....++++|+||.... +..... ...
T Consensus 93 ~~------------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~-sR~ 152 (316)
T PHA02544 93 ST------------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR-SRC 152 (316)
T ss_pred Hh------------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH-hhc
Confidence 00 0 0113456789999975 1 2233444444444456778888887543 222221 011
Q ss_pred cceecccccCCCCCCCChHHHHHHHH
Q 015752 343 EKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
..+.++ .. +.++...++.
T Consensus 153 ~~i~~~------~p--~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFG------VP--TKEEQIEMMK 170 (316)
T ss_pred eEEEeC------CC--CHHHHHHHHH
Confidence 223665 56 7777665544
No 70
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.11 E-value=7e-05 Score=71.09 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=83.7
Q ss_pred ccccccccHHHHHHHHh---c-------C---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCH
Q 015752 187 DISHFERGREELFDLLI---E-------G---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF 253 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (401)
.++|.++.+++|.++.. - + .....-+.++|++|.|||++|+.++.-..........-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 46777776666544321 1 0 11122577999999999999977765211111111112444432
Q ss_pred HHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 015752 254 RRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 254 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~ 323 (401)
.+ ++..+.+. +.......+.+ . ..-+|+||++.. ..+.+..|...+.....+.+
T Consensus 99 ~~----l~~~~~g~---------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 DD----LVGQYIGH---------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred HH----HhHhhccc---------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 12 22222221 12222222222 2 235889999862 02334556666655555667
Q ss_pred EEEecCChhHHhhch------hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPDLLASLE------MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~v~~~~~------~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
||.++.......... ......+.++ ++ +++|-..++...+.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp------~l--~~edl~~I~~~~l~ 209 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFP------DY--SEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC------Cc--CHHHHHHHHHHHHH
Confidence 777776543322110 0012344888 99 99999999998874
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=2.2e-05 Score=71.64 Aligned_cols=155 Identities=13% Similarity=0.152 Sum_probs=86.1
Q ss_pred Ccc-ccc-cccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHH
Q 015752 186 LDI-SHF-ERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 186 ~~~-vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 260 (401)
.+| +|- ....-.....+... +.....+.|+|..|+|||.|.+.+++ ......+ .++++ +..++...+
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~ 79 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREF 79 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHH
Confidence 344 464 23333444445443 33345688999999999999999998 4433222 35555 345555566
Q ss_pred HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHH-HhhCCC-CCCCcEEEEecCCh-----
Q 015752 261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDV-EELLPD-DENGSRVFITVTDP----- 331 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l-~~~l~~-~~~gs~iivTTR~~----- 331 (401)
...+... .. ..+.+.+. .-=+|+|||+.. ....|... ...+.. ...|.+||+|+...
T Consensus 80 ~~~~~~~---------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 80 ADALRDG---------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHTT---------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred HHHHHcc---------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 5554332 22 22334444 345789999976 23334332 222221 13467899999654
Q ss_pred ----hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 332 ----DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 332 ----~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
++.+.+ .....++++ ++ +.++-..++.+++.
T Consensus 146 ~~~~~L~SRl--~~Gl~~~l~------~p--d~~~r~~il~~~a~ 180 (219)
T PF00308_consen 146 GLLPDLRSRL--SWGLVVELQ------PP--DDEDRRRILQKKAK 180 (219)
T ss_dssp TS-HHHHHHH--HCSEEEEE------------HHHHHHHHHHHHH
T ss_pred ccChhhhhhH--hhcchhhcC------CC--CHHHHHHHHHHHHH
Confidence 223333 233333999 99 99999999999984
No 72
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.09 E-value=6e-05 Score=74.81 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=88.0
Q ss_pred CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|+++.++++.+.+.. . -...+-|.++|++|+|||++|+.+++ ..... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----H
Confidence 7789999999999887632 1 13355688999999999999999998 33322 222211 1
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C-----------chhHHHHHhhC---CC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D-----------SEIWIDVEELL---PD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l---~~- 317 (401)
.+ .....+ ........+.+.. ...+.+|+||++.. - .+....+...+ ..
T Consensus 200 ~l----~~~~~g----------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 EL----VQKFIG----------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HH----hHhhcc----------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 11 111111 1111222222222 34678999999864 0 11112232222 21
Q ss_pred -CCCCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752 318 -DENGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~ 374 (401)
...+..||.||...+.....-. +..+.. .++ +. +.++..++|..++...
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~------~P--~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVP------LP--DEEGRLEILKIHTRKM 318 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEEC------CC--CHHHHHHHHHHHhccC
Confidence 1235667777776543221100 122344 888 88 9999999999887543
No 73
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=0.00015 Score=68.17 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=111.4
Q ss_pred ccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhcccCcc--cc--cCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752 193 RGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYNNNHVK--FY--FDCHAWVRVSLDYDFRRILDDIIKSVIPP 267 (401)
Q Consensus 193 ~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 267 (401)
+.+++|.+.|... .....-+.|+|.+|.|||++++++....-.. .. --.++.+.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3345555555442 4456789999999999999999998531111 11 11466677888999999999999999987
Q ss_pred CCCccccCcCHHHHHHHHHHHcCC-ceEEEEEeCCCC--C--c---hhHHHHHhhCCCCCCCcEEEEecCChhHHhhch-
Q 015752 268 SRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD--D--S---EIWIDVEELLPDDENGSRVFITVTDPDLLASLE- 338 (401)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~--~--~---~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~- 338 (401)
... ......+.......|+. +-=+||+|.+.+ . . .+.-.....|.+.-.=+-|.+-|++-.-+-...
T Consensus 124 ~~~----~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 124 YRP----RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred cCC----CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 432 11444555555556643 555899999976 1 1 111222233333223345566665432211110
Q ss_pred -h-CCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 -M-ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 -~-~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
+ +....+.++ +- ...+|...|+...-...|...... -...++++.|. .|+|..
T Consensus 200 QLa~RF~~~~Lp------~W-~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 200 QLASRFEPFELP------RW-ELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLI 255 (302)
T ss_pred HHHhccCCccCC------CC-CCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCch
Confidence 0 011111333 33 245666777766554444433222 22378899999 888864
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00015 Score=71.18 Aligned_cols=173 Identities=12% Similarity=0.058 Sum_probs=96.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeE------EEEEcCCCCCHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCH------AWVRVSLDYDFRRILDD 259 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------~wv~vs~~~~~~~~~~~ 259 (401)
.+++|-+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+.+..--....... .-..+...+. ..+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHHH
Confidence 78999999999999888763 234468899999999999997775521111100000 0000000010 1111
Q ss_pred HHHHcCCC-------CCCc-cc-cCc-CHHHHHHHHHHHcC-----CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752 260 IIKSVIPP-------SRVS-VI-IGE-DYQLKKSILRDYLT-----NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 260 i~~~l~~~-------~~~~-~~-~~~-~~~~l~~~l~~~L~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (401)
+...-.++ ..+. .. ... ..+++. .+.+.+. +.+-++|+|++.. +......|...+-....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11100000 0000 00 011 233332 3333332 4667899999987 77788888877776556677
Q ss_pred EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|++|.+.+ +...+. .....+.+. +| +.++..+++.+..+
T Consensus 174 ~IL~t~~~~~llpti~-SRc~~i~l~------~l--~~~~i~~~L~~~~~ 214 (365)
T PRK07471 174 FLLVSHAPARLLPTIR-SRCRKLRLR------PL--APEDVIDALAAAGP 214 (365)
T ss_pred EEEEECCchhchHHhh-ccceEEECC------CC--CHHHHHHHHHHhcc
Confidence 777777654 333331 122333888 99 99999999988754
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.3e-05 Score=77.00 Aligned_cols=170 Identities=8% Similarity=-0.002 Sum_probs=92.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+...-..... ...++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 67899888777777777643 2246778899999999999999887322111000 001111111112211110
Q ss_pred CCCCCccccCc-CHH---HHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~---~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
........... ..+ .+...+... ..+++-+||||++.. +...++.|...+........+|++|.+ ..+...+.
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 00000000000 112 222222211 235667999999977 567778888887654445666665544 44443331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
. ....+++. ++ +.++....+.+.+.
T Consensus 168 S-Rcq~i~F~------pL--s~~eL~~~L~~il~ 192 (624)
T PRK14959 168 S-RCQHFTFT------RL--SEAGLEAHLTKVLG 192 (624)
T ss_pred h-hhhccccC------CC--CHHHHHHHHHHHHH
Confidence 1 11233777 99 99999888887663
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.04 E-value=9.9e-05 Score=67.61 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=73.2
Q ss_pred Cccc-cccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDIS-HFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~v-Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
++|+ |...........+.........+.|+|.+|+|||+||+.+++. ....-....+++..... ..+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL------LAF---- 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH------HHH----
Confidence 5555 4444433333333222233457889999999999999999883 21111123444332211 000
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCc-EEEEecCChhHHhhc----
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGS-RVFITVTDPDLLASL---- 337 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs-~iivTTR~~~v~~~~---- 337 (401)
... ...-+||+||+.. +...-..|...+... ..+. .+|+|++........
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 011 2334789999965 333323444444321 2333 466676654322211
Q ss_pred --hhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 338 --EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 338 --~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+......+.+. || ++++-..++.+.+
T Consensus 143 ~sr~~~~~~i~l~------pl--~~~~~~~~l~~~~ 170 (227)
T PRK08903 143 RTRLGWGLVYELK------PL--SDADKIAALKAAA 170 (227)
T ss_pred HHHHhcCeEEEec------CC--CHHHHHHHHHHHH
Confidence 00112333888 99 8887777776644
No 77
>PRK05642 DNA replication initiation factor; Validated
Probab=98.03 E-value=8.6e-05 Score=68.44 Aligned_cols=121 Identities=14% Similarity=0.224 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
..+.|+|..|+|||.|++.+++ .....-..++|++... +... . ..+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------~----~~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------G----PELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------h----HHHHHhh
Confidence 5788999999999999999987 3332223456665432 1110 0 1122222
Q ss_pred CCceEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCChhHH---------hhchhCCCcce-ecccccCCCC
Q 015752 290 TNKKYFIVLDDVFD--DSEIWID-VEELLPD-DENGSRVFITVTDPDLL---------ASLEMENGEKI-RLDSVLFGGP 355 (401)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~iivTTR~~~v~---------~~~~~~~~~~~-~l~~~~~~~~ 355 (401)
.+-. +||+||+.. ....|.. +...+.. ...|..+|+|++...-. +.+ ....+ +++ +
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl---~~gl~~~l~------~ 165 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL---TLALVFQMR------G 165 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH---hcCeeeecC------C
Confidence 2222 688999964 1335544 3333321 13467889988764321 111 22344 788 9
Q ss_pred CCCChHHHHHHHHHhhC
Q 015752 356 LIRLKHEAWQFFILHYG 372 (401)
Q Consensus 356 L~~~~~ea~~Lf~~~a~ 372 (401)
+ +.++-..++..++.
T Consensus 166 ~--~~e~~~~il~~ka~ 180 (234)
T PRK05642 166 L--SDEDKLRALQLRAS 180 (234)
T ss_pred C--CHHHHHHHHHHHHH
Confidence 9 99999999997763
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00024 Score=72.38 Aligned_cols=154 Identities=8% Similarity=0.007 Sum_probs=90.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---cc----------------ccCeEEEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KF----------------YFDCHAWVR 246 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~~wv~ 246 (401)
.+++|-+.....|..++..+. -.....++|+.|+||||+|+.++....- .. .|...+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 788999999999999887532 3345678999999999999988762110 00 011111111
Q ss_pred cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752 247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV 324 (401)
Q Consensus 247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i 324 (401)
.+....+. +...+.+.+... ..+++-++|+|++.. .....+.|...+......+.+
T Consensus 95 aas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 95 AASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred CccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11110000 122222222211 135677999999976 466677888777765555555
Q ss_pred EEec-CChhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 325 FITV-TDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 325 ivTT-R~~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
|++| +...+..... .....+.+. ++ +.++-...+.+.+
T Consensus 153 Il~tt~~~kl~~tI~-SRc~~i~f~------~l--s~~el~~~L~~i~ 191 (486)
T PRK14953 153 ILCTTEYDKIPPTIL-SRCQRFIFS------KP--TKEQIKEYLKRIC 191 (486)
T ss_pred EEEECCHHHHHHHHH-HhceEEEcC------CC--CHHHHHHHHHHHH
Confidence 5544 4334433221 012233888 89 9999888888766
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=7.1e-05 Score=70.19 Aligned_cols=159 Identities=9% Similarity=0.026 Sum_probs=81.0
Q ss_pred CccccccccHHHHHHH---Hhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752 186 LDISHFERGREELFDL---LIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD 252 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (401)
..++|.+..++++.+. +.- ..+...-+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3578887777666433 211 123455678999999999999999976210000001111222211
Q ss_pred HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------chhHHHHHhhCCCCCCCcE
Q 015752 253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------SEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~~~~~~l~~~l~~~~~gs~ 323 (401)
.++ .....+. ........+.+. . .-+|+||++.. . .+..+.+...+.+......
T Consensus 83 -~~l----~~~~~g~---------~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 83 -ADL----VGEYIGH---------TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred -HHh----hhhhccc---------hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 111 1111111 222222223222 2 34889999964 1 1234445555544443445
Q ss_pred EEEecCChhHHh------hchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPDLLA------SLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~v~~------~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|+++...+... .........+.++ ++ +.++-.+++.+.+.
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~------~~--~~~el~~Il~~~~~ 192 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFP------DY--TVEELMEIAERMVK 192 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccceEEEEC------CC--CHHHHHHHHHHHHH
Confidence 566655433211 1100112223778 99 99999999998874
No 80
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.0002 Score=72.35 Aligned_cols=153 Identities=11% Similarity=0.023 Sum_probs=89.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc---------------------ccCeEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF---------------------YFDCHAW 244 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~w 244 (401)
.+++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+.+...-.. +++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 789999999999998886532 235677899999999999988865211110 011 111
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 015752 245 VRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGS 322 (401)
Q Consensus 245 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (401)
+.-....... +..++...+... ..+++-++|+|++.. .....+.|...+.+....+
T Consensus 95 i~g~~~~gid----------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 95 IDGASHRGIE----------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eeccccCCHH----------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1100000000 111111111111 125667899999865 4556677877777655566
Q ss_pred EEEEecC-ChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 323 RVFITVT-DPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 323 ~iivTTR-~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.+|++|. ...+...+. ..-.+ ++. ++ ++++....+.+.+.
T Consensus 153 ~~Il~t~~~~kl~~tI~--sRc~~v~f~------~l--~~~el~~~L~~~~~ 194 (451)
T PRK06305 153 KFFLATTEIHKIPGTIL--SRCQKMHLK------RI--PEETIIDKLALIAK 194 (451)
T ss_pred eEEEEeCChHhcchHHH--HhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence 6666553 333332221 12233 888 99 99998888887763
No 81
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00028 Score=72.19 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=100.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+...+.|...+..+ .-.....++|+.|+||||+|+.+.+..--...-+. .++..-.....+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 78999888888888888653 23456689999999999999977652110000000 00000000000000000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
...-+...... ..+++...+... ..+++-++|+|++.. +.+..+.|...+-.....+++|++|.+. .+.....
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 00000000000 122232222211 124566899999977 6777788887776655667777666553 2222221
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
. ....+++. ++ +.++....+.+.+... +.... .+....|+ .++|.+
T Consensus 166 S-Rc~~~~F~------~L--s~~ei~~~L~~Il~~E---Gi~i~---~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 166 S-RTQHFRFK------QI--PQNSIISHLKTILEKE---GVSYE---PEALEILARSGNGSL 212 (535)
T ss_pred h-hceeEEcC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCcH
Confidence 1 11233888 99 9999988888776421 11111 33445566 666654
No 82
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=0.00015 Score=69.47 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=80.4
Q ss_pred CccccccccHHHHHHHHhcCCCC-ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSG-LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
+.+.+|+.....+...+...+.. +..|-|.|-.|.|||.+.+.+++.. . -..+|++.-..++..-++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHh
Confidence 67889999999999988775543 3455899999999999999999843 2 2368999999999999999999999
Q ss_pred CCCCCCccccCc---CHHHHHHHHHHH--c--CCceEEEEEeCCCC
Q 015752 265 IPPSRVSVIIGE---DYQLKKSILRDY--L--TNKKYFIVLDDVFD 303 (401)
Q Consensus 265 ~~~~~~~~~~~~---~~~~l~~~l~~~--L--~~kr~LlVlDdv~~ 303 (401)
............ ........+.++ . .++.++|||||+..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 633222101110 222233333332 1 14689999999976
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.97 E-value=0.00013 Score=72.90 Aligned_cols=135 Identities=15% Similarity=0.170 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
...+.|+|.+|+|||+|++.+++ .+.... ..+++++. .++...+...+... ..... .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~----~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEF----K 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHH----H
Confidence 35688999999999999999998 443332 24555543 34444555544322 22222 2
Q ss_pred HHcCCceEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh-hHHhhc------hhCCCcceecccccCCCC
Q 015752 287 DYLTNKKYFIVLDDVFD-D-SEIW-IDVEELLPD-DENGSRVFITVTDP-DLLASL------EMENGEKIRLDSVLFGGP 355 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~iivTTR~~-~v~~~~------~~~~~~~~~l~~~~~~~~ 355 (401)
+.+.+ .-+|+|||+.. . .+.+ +.+...+.. ...+..+|+||... .-...+ +......+.++ +
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~------~ 267 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE------P 267 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC------C
Confidence 22322 34899999965 1 2112 223322221 12345677877642 221111 00111223788 8
Q ss_pred CCCChHHHHHHHHHhhCC
Q 015752 356 LIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 356 L~~~~~ea~~Lf~~~a~~ 373 (401)
. +.++-..++.+++..
T Consensus 268 p--d~~~r~~il~~~~~~ 283 (405)
T TIGR00362 268 P--DLETRLAILQKKAEE 283 (405)
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 8 999999999999853
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00015 Score=75.58 Aligned_cols=169 Identities=8% Similarity=0.003 Sum_probs=90.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+.....|..++..+ .-...+.++|+.|+||||+|+.+.+...-.+..+ ..+++.......|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 78999999899999988753 2235667899999999999998876311111100 001111111111111000
Q ss_pred CCCCCccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752 266 PPSRVSVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~ 338 (401)
.+....+.... +..++...+... ..+++-++|+|++.. +....+.|...+-+....+.+|+ ||....+...+.
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 00000000000 222222222211 134556889999977 56677888887776555666665 544454544331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
. ....+++. ++ +.++....+...+
T Consensus 168 S-Rc~~~~f~------~l--~~~~i~~~L~~i~ 191 (576)
T PRK14965 168 S-RCQRFDFR------RI--PLQKIVDRLRYIA 191 (576)
T ss_pred H-hhhhhhcC------CC--CHHHHHHHHHHHH
Confidence 0 11223677 88 8888877777665
No 85
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.96 E-value=0.00014 Score=73.58 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSIL 285 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 285 (401)
....+.|+|.+|+|||+|++.+++ .+...+. .+++++. ..+...+...+... .... +
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~----~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEE----F 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHH----H
Confidence 345688999999999999999998 4444432 3455543 33344444444222 2222 2
Q ss_pred HHHcCCceEEEEEeCCCC-C-ch-hHHHHHhhCCC-CCCCcEEEEecCChh-H--------HhhchhCCCcce-eccccc
Q 015752 286 RDYLTNKKYFIVLDDVFD-D-SE-IWIDVEELLPD-DENGSRVFITVTDPD-L--------LASLEMENGEKI-RLDSVL 351 (401)
Q Consensus 286 ~~~L~~kr~LlVlDdv~~-~-~~-~~~~l~~~l~~-~~~gs~iivTTR~~~-v--------~~~~~~~~~~~~-~l~~~~ 351 (401)
.+.++ +.-+|||||+.. . .. ..+.+...+.. ...|..||+||.... - ...+ ....+ .++
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl---~~gl~v~i~--- 278 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF---EWGLTVDIE--- 278 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh---cCCeeEEec---
Confidence 33333 344899999965 1 11 11233332211 123456788776542 1 1222 22334 888
Q ss_pred CCCCCCCChHHHHHHHHHhhC
Q 015752 352 FGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 352 ~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
++ +.++-..++.+++.
T Consensus 279 ---~p--d~~~r~~il~~~~~ 294 (450)
T PRK00149 279 ---PP--DLETRIAILKKKAE 294 (450)
T ss_pred ---CC--CHHHHHHHHHHHHH
Confidence 99 99999999999984
No 86
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.93 E-value=3.8e-05 Score=63.45 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcc
Q 015752 212 VAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~~ 232 (401)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 87
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00027 Score=74.33 Aligned_cols=164 Identities=10% Similarity=-0.003 Sum_probs=91.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+.....|..++..+ .-...+.++|+.|+||||+|+.++...--.+..+ ...++. ..... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~------~~~pC~---~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD------LLEPCQ---ECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC------CCCchh---HHHHh---hc
Confidence 78999999899999988753 2345667899999999999998876211110000 000000 00000 00
Q ss_pred CCCC--Cccc---cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE-EecCChhHHhh
Q 015752 266 PPSR--VSVI---IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF-ITVTDPDLLAS 336 (401)
Q Consensus 266 ~~~~--~~~~---~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~ 336 (401)
.... .... ... +...+.+.+... ..+++-++|+|++.. ....+..|...+-.....+.+| +|+....+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 0000 000 122333322221 235667899999976 5677888888777655555555 45555555433
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
... ....+++. ++ +.++....+...+
T Consensus 165 I~S-Rcq~ieF~------~L--~~eeI~~~L~~il 190 (725)
T PRK07133 165 ILS-RVQRFNFR------RI--SEDEIVSRLEFIL 190 (725)
T ss_pred HHh-hceeEEcc------CC--CHHHHHHHHHHHH
Confidence 311 12334888 99 9999888888765
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00026 Score=69.07 Aligned_cols=172 Identities=12% Similarity=0.052 Sum_probs=97.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc--ccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF--YFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
..++|-+.....+...+..+ .....+.|+|+.|+||||+|..+.+..--.. .+... ....++......+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 77999999999999988753 2345688999999999999998876321100 01111 011111111122222222
Q ss_pred cC-------CCCCCc-ccc-Cc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 015752 264 VI-------PPSRVS-VII-GE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFIT 327 (401)
Q Consensus 264 l~-------~~~~~~-~~~-~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivT 327 (401)
-. .+.... ... .. ..+++. .+.+++ .+++-++|+|++.. +....+.|...+-....++.+|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 11 000000 000 11 234333 344443 25677999999987 777777777777665445555554
Q ss_pred c-CChhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 328 V-TDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 328 T-R~~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
| +...+.......+ ..+++. |+ +.++...++.+..
T Consensus 178 t~~~~~llptIrSRc-~~i~l~------pl--~~~~~~~~L~~~~ 213 (351)
T PRK09112 178 SHSSGRLLPTIRSRC-QPISLK------PL--DDDELKKALSHLG 213 (351)
T ss_pred ECChhhccHHHHhhc-cEEEec------CC--CHHHHHHHHHHhh
Confidence 4 4434433332122 333888 99 9999999998843
No 89
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=4.4e-05 Score=75.83 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||++++.++..+++..+ .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----R 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----C
Confidence 66888899999999999752 467789999999999999999855555678889999999988876655422 1
Q ss_pred CCCCCccccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD 303 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~ 303 (401)
.... ...-........+.+.. .+++++||+|++..
T Consensus 247 P~~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 247 PNGV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCC---CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 1100 01001111112222222 24789999999966
No 90
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00017 Score=72.73 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccccc-C-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF-D-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
..-+.|+|.+|+|||+|++.+++ .+.... . .++|++. .+++..+...+... .... +.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence 44588999999999999999998 443332 2 4566643 44566666555332 2222 23
Q ss_pred HHcCCceEEEEEeCCCC--CchhH-HHHHhhCCC-CCCCcEEEEecC-ChhHHhhc----hhC-CCcce-ecccccCCCC
Q 015752 287 DYLTNKKYFIVLDDVFD--DSEIW-IDVEELLPD-DENGSRVFITVT-DPDLLASL----EME-NGEKI-RLDSVLFGGP 355 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~-~~~gs~iivTTR-~~~v~~~~----~~~-~~~~~-~l~~~~~~~~ 355 (401)
+.+..+.-+|+|||+.. +...+ +.+...+.. ...|..||+||. .+.-...+ ... ...-+ .++ +
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~------~ 262 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE------P 262 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC------C
Confidence 33333456899999964 12212 223222211 123457888874 43322111 000 22234 888 8
Q ss_pred CCCChHHHHHHHHHhhC
Q 015752 356 LIRLKHEAWQFFILHYG 372 (401)
Q Consensus 356 L~~~~~ea~~Lf~~~a~ 372 (401)
. +.+.-..++.+++.
T Consensus 263 p--d~e~r~~IL~~~~~ 277 (440)
T PRK14088 263 P--DEETRKKIARKMLE 277 (440)
T ss_pred C--CHHHHHHHHHHHHH
Confidence 8 99999999999885
No 91
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00019 Score=72.51 Aligned_cols=155 Identities=11% Similarity=0.087 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
..-+.|+|..|+|||+|++.+++ .+.... ..++++ +..+++..+...+... . .....+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~---------~--~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKT---------H--KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh---------h--hHHHHHH
Confidence 35688999999999999999988 333222 233444 3345666666655321 0 1122333
Q ss_pred HHcCCceEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCChh---------HHhhchhCCCcce-ecccccC
Q 015752 287 DYLTNKKYFIVLDDVFD-D-SEIW-IDVEELLPD-DENGSRVFITVTDPD---------LLASLEMENGEKI-RLDSVLF 352 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~~-~l~~~~~ 352 (401)
+.+. ..-+|||||+.. . ...+ +.+...+.. ...|..||+|+.... +...+ ...-+ .++
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~---~~Gl~~~L~---- 273 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF---NMGLSIAIQ---- 273 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH---hCCceeccC----
Confidence 4343 344888999965 2 1222 333333322 124557888876542 22222 22333 788
Q ss_pred CCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752 353 GGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY 398 (401)
Q Consensus 353 ~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~ 398 (401)
++ +.++-..++.+++-......... +++..-|+ .|.|.
T Consensus 274 --~p--d~e~r~~iL~~~~~~~gl~~~l~----~evl~~Ia~~~~gd 312 (450)
T PRK14087 274 --KL--DNKTATAIIKKEIKNQNIKQEVT----EEAINFISNYYSDD 312 (450)
T ss_pred --Cc--CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHccCCC
Confidence 99 99999999999884311110111 45555566 55554
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=0.00012 Score=79.39 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||+.++.++++.|..... .-+.++|.+|+||||||+.+++
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHH
Confidence 7799999999999999876432 2345899999999999999987
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0004 Score=72.71 Aligned_cols=172 Identities=9% Similarity=-0.023 Sum_probs=93.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+.....|..++..+. -...+.++|+.|+||||+|+.++....-...... ....+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 778999999999988887532 2346778999999999999999773211110000 0011111122222222211
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
........... ..+.+.+.+... ..+++-++|+|++.. ....++.|...+-+....+.+|++|.+ ..+...+.
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 11000000011 222222222211 124566889999976 567788888888765555655554443 33333331
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.....+.+. ++ +.++....+.+.+.
T Consensus 170 -SRc~~~~f~------~l--~~~ei~~~L~~ia~ 194 (620)
T PRK14948 170 -SRCQRFDFR------RI--PLEAMVQHLSEIAE 194 (620)
T ss_pred -hheeEEEec------CC--CHHHHHHHHHHHHH
Confidence 011223777 88 88888877777664
No 94
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.89 E-value=8.8e-05 Score=61.19 Aligned_cols=86 Identities=12% Similarity=-0.040 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
..+.|+|++|+||||+++.++. ........++++..+........... ....... ............+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-----KASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhcc-----CCCCCHHHHHHHHHHHH
Confidence 4788999999999999999988 33333234555554443322111111 0011111 01113333333444444
Q ss_pred CCc-eEEEEEeCCCC
Q 015752 290 TNK-KYFIVLDDVFD 303 (401)
Q Consensus 290 ~~k-r~LlVlDdv~~ 303 (401)
+.. ..+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 443 49999999988
No 95
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=9.2e-05 Score=69.62 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
..+.++|.+|+|||.||..+++ .+......+++++ ..+++..+......... .+... +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccHHH----HHHHh
Confidence 3578999999999999999998 4433333456654 34455555544432210 02222 23334
Q ss_pred CCceEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCCh
Q 015752 290 TNKKYFIVLDDVFD-DSEIWID--VEELLPD-DENGSRVFITVTDP 331 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~iivTTR~~ 331 (401)
.+-. ||||||+.. ...+|.. |...+.. -.++..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 899999943 2444533 3333221 12456789998754
No 96
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.00016 Score=77.63 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=85.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc---Cccccc-CeEEEEEcCCCCCHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN---HVKFYF-DCHAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i~ 261 (401)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++.. .+...+ +..+|. + +...+ +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----L 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----h
Confidence 679999999999999887643 2234689999999999999998732 111112 334442 1 11111 1
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C---------chhHHHHHhhCCCCCCCcEEEEecCC
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D---------SEIWIDVEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~---------~~~~~~l~~~l~~~~~gs~iivTTR~ 330 (401)
.... ...+.+.....+.+.+ ..++.+|++|++.. . .+.-+-|...+.. + .-++|-+|..
T Consensus 251 a~~~--------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~ 320 (731)
T TIGR02639 251 AGTK--------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTY 320 (731)
T ss_pred hhcc--------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCH
Confidence 1000 0002333333333333 34678999999864 1 1112334444432 1 2344444443
Q ss_pred hhHH------hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 331 PDLL------ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 331 ~~v~------~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
++.. ... ......+.++ ++ +.++..+++....
T Consensus 321 ~e~~~~~~~d~al-~rRf~~i~v~------~p--~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRAL-SRRFQKIDVG------EP--SIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHH-HHhCceEEeC------CC--CHHHHHHHHHHHH
Confidence 2211 111 0123445889 99 9999999999655
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00037 Score=72.00 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
..+.|+|..|+|||.|++.+++ .....+ ..+++++ ..+++.++...+... .. ..+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~----~~f~~ 373 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KG----DSFRR 373 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cH----HHHHH
Confidence 4588999999999999999998 443322 2345553 344444554443222 11 12333
Q ss_pred HcCCceEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCCh---------hHHhhchhCCCcce-ecccccCC
Q 015752 288 YLTNKKYFIVLDDVFD--DSEIWID-VEELLPD-DENGSRVFITVTDP---------DLLASLEMENGEKI-RLDSVLFG 353 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~-~l~~~~~~ 353 (401)
.+.. -=+|||||+.. ..+.|.. |...|.. ...|..|||||+.. .+...+ ...-+ .|+
T Consensus 374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf---~~GLvv~I~----- 444 (617)
T PRK14086 374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF---EWGLITDVQ----- 444 (617)
T ss_pred Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh---hcCceEEcC-----
Confidence 3333 35788999966 2233332 2222221 12356788888763 122222 23334 888
Q ss_pred CCCCCChHHHHHHHHHhhC
Q 015752 354 GPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 354 ~~L~~~~~ea~~Lf~~~a~ 372 (401)
+. +.+.-..++.+++.
T Consensus 445 -~P--D~EtR~aIL~kka~ 460 (617)
T PRK14086 445 -PP--ELETRIAILRKKAV 460 (617)
T ss_pred -CC--CHHHHHHHHHHHHH
Confidence 88 99999999999884
No 98
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00023 Score=72.38 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=89.6
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccc-----cCeEEEEEcCC
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY-----FDCHAWVRVSL 249 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 249 (401)
.++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+.+++. .... +....|+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 7788899999888887642 1123456889999999999999999983 3322 12344444433
Q ss_pred CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC---C-----chh-----HHHHHhhC
Q 015752 250 DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---D-----SEI-----WIDVEELL 315 (401)
Q Consensus 250 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~---~-----~~~-----~~~l~~~l 315 (401)
. +++....+. .......+....++.. .+++++|+||+++. . ..+ ...+...+
T Consensus 260 ~--------eLl~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P--------ELLNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h--------hhcccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 111111110 0001122222222222 35789999999964 0 011 23444444
Q ss_pred CCC--CCCcEEEEecCChhHHhhc--hhCCCcc-eecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 316 PDD--ENGSRVFITVTDPDLLASL--EMENGEK-IRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 316 ~~~--~~gs~iivTTR~~~v~~~~--~~~~~~~-~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
..- ..+..||.||...+..... +-+..+. +.++ +. +.++..++|..+..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~------~P--d~e~r~~Il~~~l~ 379 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIE------RP--DAEAAADIFSKYLT 379 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeC------CC--CHHHHHHHHHHHhh
Confidence 321 1344455666555432211 0012233 3788 88 99999999998874
No 99
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.0002 Score=65.08 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
..+.|+|++|+|||+|++.+++... . .++. .... . . +.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------~---------~---------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------N---------E---------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------c---------h---------hHH
Confidence 5688999999999999999877321 1 1111 0000 0 0 011
Q ss_pred CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-------HhhchhCCCcce-ecccccCCCCCCCCh
Q 015752 290 TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-------LASLEMENGEKI-RLDSVLFGGPLIRLK 360 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-------~~~~~~~~~~~~-~l~~~~~~~~L~~~~ 360 (401)
...-+|++||+.. .....-.+...+. ..|..||+|++.+.. .+.+ ...-+ +++ ++ +.
T Consensus 84 -~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl---~~gl~~~l~------~p--d~ 149 (214)
T PRK06620 84 -EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI---KSVLSILLN------SP--DD 149 (214)
T ss_pred -hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH---hCCceEeeC------CC--CH
Confidence 1235788999965 1222222322222 346789999885432 2222 23334 889 99 99
Q ss_pred HHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752 361 HEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY 398 (401)
Q Consensus 361 ~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~ 398 (401)
++-..++.+.+...... .. +++..-|+ .|.+.
T Consensus 150 ~~~~~~l~k~~~~~~l~--l~----~ev~~~L~~~~~~d 182 (214)
T PRK06620 150 ELIKILIFKHFSISSVT--IS----RQIIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHccCC
Confidence 99888888887421111 11 45555666 55543
No 100
>PRK08181 transposase; Validated
Probab=97.79 E-value=6e-05 Score=70.72 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.-+.++|++|+|||.||..+.+ ........+.|++ ..+++..+....... +....... +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~~---------~~~~~l~~----l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARREL---------QLESAIAK----L 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhCC---------cHHHHHHH----H
Confidence 3478999999999999999987 3333333455554 345555554332111 22222222 2
Q ss_pred CCceEEEEEeCCCC-CchhH--HHHHhhCCCCCCCcEEEEecCCh
Q 015752 290 TNKKYFIVLDDVFD-DSEIW--IDVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~~~gs~iivTTR~~ 331 (401)
.+--||||||+.. ....| ..+...+...-.+..+||||...
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2345999999965 22222 23333332211123588888765
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00081 Score=69.80 Aligned_cols=170 Identities=9% Similarity=-0.021 Sum_probs=92.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|.+.....|.+++..+. -...+.++|+.|+||||+|+.+.....-.+.- -..+++.-.....|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence 789999999999999987642 34567789999999999999886521111000 0011111111222211111
Q ss_pred CCCCCccccCc-CHH---HHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~---~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~ 338 (401)
.+..+.+.... ..+ ++...+... ..++.-++|+|++.. ....+..|...+......+.+|++| ....+...+.
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 10000000001 222 222222211 135667889999976 5677888888776655555555544 4433333221
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.....+... ++ +.++....+...+.
T Consensus 168 -SRc~~~~f~------~~--~~~ei~~~L~~i~~ 192 (559)
T PRK05563 168 -SRCQRFDFK------RI--SVEDIVERLKYILD 192 (559)
T ss_pred -hHheEEecC------CC--CHHHHHHHHHHHHH
Confidence 011223667 88 99888888887763
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00084 Score=69.55 Aligned_cols=169 Identities=9% Similarity=-0.058 Sum_probs=92.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-...... .++..-...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCCC
Confidence 78999999999999988753 23456789999999999999998773211110000 00000000011111000
Q ss_pred CCCCCccccCc-CHHHHHHHH---HHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSIL---RDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l---~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~ 338 (401)
.+-........ ..+++.... ... ..+++-++|+|++.. ....++.|...+......+.+|.+|.. ..+...+.
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00000000000 222222221 111 235666899999977 567788888888766666666665543 34433321
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.....++.. ++ +.++-...+.+.+
T Consensus 168 -SRc~~~~f~------~l--~~~el~~~L~~i~ 191 (563)
T PRK06647 168 -SRCQHFNFR------LL--SLEKIYNMLKKVC 191 (563)
T ss_pred -HhceEEEec------CC--CHHHHHHHHHHHH
Confidence 011223777 88 8888888887776
No 103
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.76 E-value=0.00053 Score=68.06 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=86.4
Q ss_pred CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.+..+++|.+.+.. . -...+-+.++|++|+|||+||+.+++ .....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEeh------H
Confidence 7889999888888776631 1 12356788999999999999999998 333333 11211 1
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------ch---hHHHHHhhCCC--
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------SE---IWIDVEELLPD-- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~-- 317 (401)
.+ .....+. ....+...+.......+.+|+||++.. - .. .+..+...+..
T Consensus 214 ~l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 EF----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HH----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 11 1111111 222222333333346789999999753 0 00 12233333321
Q ss_pred CCCCcEEEEecCChhHHhh--chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 318 DENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 318 ~~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...+..||+||...+.... .+.+..+.. .++ +. +.++...+|.....
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~------~P--~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP------LP--DRRQKRLIFQTITS 330 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC------Cc--CHHHHHHHHHHHHh
Confidence 1235678888876653321 111122333 666 66 88888888887654
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00032 Score=70.71 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
..-+.|+|+.|+|||+|++.+++ .+......+++++ ...+...+...+... .. ..+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~~----~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------EM----QRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------hH----HHHHHH
Confidence 35678999999999999999998 3332223345553 234444555544322 11 223343
Q ss_pred cCCceEEEEEeCCCC-CchhH--HHHHhhCCC-CCCCcEEEEecCCh-hH----HhhchhC-CCcce-ecccccCCCCCC
Q 015752 289 LTNKKYFIVLDDVFD-DSEIW--IDVEELLPD-DENGSRVFITVTDP-DL----LASLEME-NGEKI-RLDSVLFGGPLI 357 (401)
Q Consensus 289 L~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~-~~~gs~iivTTR~~-~v----~~~~~~~-~~~~~-~l~~~~~~~~L~ 357 (401)
+. ..-+|++||+.. ....| +.+...+.. ...|..||+||... .- ...+..+ ....+ .++ ++
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~------~p- 271 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLH------PL- 271 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC------CC-
Confidence 43 345888999855 22111 223322211 11355788888652 21 1111101 22334 888 99
Q ss_pred CChHHHHHHHHHhhC
Q 015752 358 RLKHEAWQFFILHYG 372 (401)
Q Consensus 358 ~~~~ea~~Lf~~~a~ 372 (401)
+.++-..++.+++.
T Consensus 272 -d~e~r~~iL~~k~~ 285 (445)
T PRK12422 272 -TKEGLRSFLERKAE 285 (445)
T ss_pred -CHHHHHHHHHHHHH
Confidence 99999999998874
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.70 E-value=0.00062 Score=73.20 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=38.5
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.+|.++.+++|+++|.. +.....++.++|++|+||||+|+.++.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6689999999999998863 122345788999999999999999987
No 106
>CHL00176 ftsH cell division protein; Validated
Probab=97.69 E-value=0.00084 Score=70.48 Aligned_cols=156 Identities=12% Similarity=0.163 Sum_probs=86.3
Q ss_pred CccccccccHHHHHHHH---hcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLL---IEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.++.|.++..+++.+.+ ... ....+-+.++|++|.|||+||+.+++. ... -|+.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----H
Confidence 78889877666655543 321 122456889999999999999999873 221 22333211 1
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chh----HHHHHhhCCC--C
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEI----WIDVEELLPD--D 318 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~----~~~l~~~l~~--~ 318 (401)
+. ...... ....+...+.......+++|+||++.. . ... +..+...+.. .
T Consensus 252 f~----~~~~g~---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 FV----EMFVGV---------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HH----HHhhhh---------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 111010 222334444455567889999999953 0 111 2333333321 2
Q ss_pred CCCcEEEEecCChhHHhh-c-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 319 ENGSRVFITVTDPDLLAS-L-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 319 ~~gs~iivTTR~~~v~~~-~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
..+-.||.||...+.... + +-+..+.. .++ +. +.++-.+++..++..
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~------lP--d~~~R~~IL~~~l~~ 368 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVS------LP--DREGRLDILKVHARN 368 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEEC------CC--CHHHHHHHHHHHHhh
Confidence 235566777766543322 1 10122344 777 77 888888898888753
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.66 E-value=0.00031 Score=76.65 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=36.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||+.++.+++..|..... .-+.++|++|+|||+||+.+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999976432 3344789999999999999887
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.65 E-value=0.00028 Score=76.66 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=37.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..++||+++++++++.|..... .-+.++|++|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999976432 23458999999999999998773
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00054 Score=73.61 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=68.1
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-+..++.+.+.+... .....++.++|++|+|||+||+.++. .. +...+.+..+.-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----
Confidence 45778788888887777631 12345688999999999999999987 33 2234455544321111
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD 318 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~ 318 (401)
.+...++.... -... ....+...++. ...-+|+||+++. .++.++.|...+..+
T Consensus 525 ~~~~lig~~~g---yvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPG---YVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCC---CcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11111222211 0111 22233333321 3346999999987 677788887776643
No 110
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.61 E-value=0.00057 Score=71.38 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=39.0
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|-+..++++..||... .....++.|+|++|+||||+++.++.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998753 22345799999999999999999987
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.61 E-value=0.00051 Score=74.81 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||+.++.++++.|..... .-+.++|.+|+|||+||+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999976432 3345889999999999999887
No 112
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00062 Score=70.15 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=65.7
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 261 (401)
.+-+|.++.+++|++.+.- ++.+-+++..+|++|+|||.+|+.|+. .....| +-++++.-.++.+|--.=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccce
Confidence 6779999999999999853 455668999999999999999999987 555554 3345665555544311100
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
..+ ..-...+++-|++. +...-|+.||.|..
T Consensus 486 TYV----------GAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 486 TYV----------GAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred eee----------ccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 000 10122333333332 34677889999854
No 113
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.60 E-value=0.0003 Score=64.58 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV 247 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 247 (401)
-.++|+|..|+|||||...+.. ...+.|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3567899999999999999987 67778987777754
No 114
>PRK06526 transposase; Provisional
Probab=97.58 E-value=0.00012 Score=68.10 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.-+.|+|++|+|||+||..+.+... +..+ .+.|+ +..+++..+....... . +...+.++
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~~~---------~---~~~~l~~l- 157 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHHAG---------R---LQAELVKL- 157 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHhcC---------c---HHHHHHHh-
Confidence 3578999999999999999976321 1222 23332 3334444443321111 1 11223322
Q ss_pred CCceEEEEEeCCCC-Cc-hhHH-HHHhhCCC-CCCCcEEEEecCCh
Q 015752 290 TNKKYFIVLDDVFD-DS-EIWI-DVEELLPD-DENGSRVFITVTDP 331 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~-~~~~-~l~~~l~~-~~~gs~iivTTR~~ 331 (401)
.+.-||||||+.. .. ..+. .+...+.. ...++ +|+||..+
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred -ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 2346899999965 11 2222 23333321 12344 88888865
No 115
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=3.2e-05 Score=67.40 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=27.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEE
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAW 244 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 244 (401)
-|.|+|++|+||||||+.+++...+. -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854444 45677776
No 116
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.58 E-value=0.0013 Score=71.44 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=38.5
Q ss_pred ccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 187 DISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++||+.+.+.|...+.. ......++.+.|..|||||+|++.|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 478999999999998865 234556999999999999999999987
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.57 E-value=0.002 Score=60.40 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH------------H
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII------------K 262 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~------------~ 262 (401)
++++..++.. + .-+.+.|++|+|||+||+.+.+ .... ..+.++.....+..+++.... .
T Consensus 11 ~~~~l~~l~~---g-~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 11 TSRALRYLKS---G-YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHhc---C-CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 4455555543 2 3456899999999999999986 2222 234455555555444432211 0
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC----------------CCCcEEE
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD----------------ENGSRVF 325 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~----------------~~gs~ii 325 (401)
....... .....+. ...+.... .+...|++|++.. +++.+..|...+..+ .++.+||
T Consensus 82 ~~~~~~~---~~~~~~~--~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI 155 (262)
T TIGR02640 82 NVVKLED---IVRQNWV--DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI 155 (262)
T ss_pred Hhhhhhc---ccceeec--CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence 0000000 0000000 00011111 1346899999977 566666666655331 1256788
Q ss_pred EecCChhHH------hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 326 ITVTDPDLL------ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 326 vTTR~~~v~------~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|+....-. .... .....+.++ .. +.++-.+++..+++
T Consensus 156 aTsN~~~~~g~~~l~~aL~-~R~~~i~i~------~P--~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 156 FTSNPVEYAGVHETQDALL-DRLITIFMD------YP--DIDTETAILRAKTD 199 (262)
T ss_pred EeeCCccccceecccHHHH-hhcEEEECC------CC--CHHHHHHHHHHhhC
Confidence 888754211 1110 012223566 55 77777778777653
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.0016 Score=64.29 Aligned_cols=194 Identities=10% Similarity=0.018 Sum_probs=111.9
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
..++||+.++..+.+++... .+....+=|.|-+|.|||.+...++.+..-...=.++++++...--....++..|...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 77999999999999999752 3445567788999999999999998853222111244666554434556677777766
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCC--ceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEe---------cCC
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFIT---------VTD 330 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iivT---------TR~ 330 (401)
+-.... ......+....+.+...+ ..+|+|+|.+.. ....-..|...|-+. -+++++|+. -|.
T Consensus 230 ~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 230 LLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 622110 011335556666666654 368999999865 211112222222221 234554432 121
Q ss_pred hhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh
Q 015752 331 PDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV 393 (401)
Q Consensus 331 ~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~ 393 (401)
-.-... .......+ ... |. +.++-.++|.++.-..+.. ...+..++-.|++.+
T Consensus 306 LprL~~-~~~~~P~~l~F~------PY--Tk~qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKva 359 (529)
T KOG2227|consen 306 LPRLNL-DLTIKPKLLVFP------PY--TKDQIVEILQQRLSEESTS-IFLNAAIELCARKVA 359 (529)
T ss_pred hhhhhh-ccCCCCceeeec------CC--CHHHHHHHHHHHHhccccc-ccchHHHHHHHHHhc
Confidence 111111 00122333 666 88 9999999999998543221 122456666666666
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.0026 Score=65.31 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=83.3
Q ss_pred CccccccccHHHHHHHHh---c-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLI---E-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++++.+.+. . +....+-+.++|++|+|||+||+.+++. .... ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 888998877766655443 1 1223345789999999999999999873 2222 222221 11
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chhHH----HHHhhCCC--C
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEIWI----DVEELLPD--D 318 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~~~----~l~~~l~~--~ 318 (401)
+ .....+. ....+...+.......+.+|+||++.. . ...+. .+...+.. .
T Consensus 124 ~----~~~~~g~---------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 124 F----VEMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred H----HHHHhcc---------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1 1111111 223333444444445778999999844 0 01122 22222221 1
Q ss_pred CCCcEEEEecCChhHHh-hc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 319 ENGSRVFITVTDPDLLA-SL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 319 ~~gs~iivTTR~~~v~~-~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
..+-.||.||....... .+ +-+..+.. .++ .. +.++-.++|...+..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~------~P--d~~~R~~il~~~l~~ 240 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD------LP--DIKGREEILKVHAKN 240 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcC------CC--CHHHHHHHHHHHHhc
Confidence 23445666676554221 11 00123334 777 66 888888888887643
No 120
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00035 Score=64.79 Aligned_cols=101 Identities=14% Similarity=0.009 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
...+.++|.+|+|||+||..+++ ........++++++. +++..+-....... .... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~~--------~~~~----~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNGQ--------SGEK----FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhccc--------hHHH----HHHH
Confidence 35788999999999999999998 444444445666543 44444443332110 1111 2222
Q ss_pred cCCceEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 015752 289 LTNKKYFIVLDDVFD-DSEIWI--DVEELLPDD-ENGSRVFITVTD 330 (401)
Q Consensus 289 L~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 330 (401)
+ .+--||||||+.. ....|. .|...+... .+..-+||||..
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 4567999999944 123343 333333321 223347777774
No 121
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.00064 Score=62.16 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=70.0
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|.+..++.|++-... .+....-+.+||..|.|||+|++.+.+ +....- .--|.+.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~------------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKE------------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHH-------------
Confidence 8899999998888664432 223345567899999999999999987 222211 111222211
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEE-EecCChhH
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD---ENGSRVF-ITVTDPDL 333 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~ii-vTTR~~~v 333 (401)
++. +...+.+.++. ...||+|.+||+.= +...+..|+..|..+ .+...+| .||...+.
T Consensus 90 ---------~L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ---------DLG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ---------Hhc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 000 33333333332 35799999999843 355677777776543 2333444 45544444
No 122
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0025 Score=68.88 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.++.++.+.+++.. +..+..++.++|++|+|||++|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5688999999998887642 222345788999999999999999998
No 123
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.53 E-value=0.0023 Score=68.86 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=86.2
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.+..++.|.+.+.- +-...+-+.++|++|+|||+||+.+++ .....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----H
Confidence 6778888888777776542 112344578899999999999999998 333333 22221 1
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------c----hhHHHHHhhCCC--CC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------S----EIWIDVEELLPD--DE 319 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~----~~~~~l~~~l~~--~~ 319 (401)
+++....+. +...+...+...-+..+.+|+||++.. - . .....+...+.. ..
T Consensus 522 ----~l~~~~vGe---------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 ----EILSKWVGE---------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ----HHhhcccCc---------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 122211111 223333333333345789999999853 0 0 112334444432 12
Q ss_pred CCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 320 NGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 320 ~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
.+--||.||..++.....-. +..+.. .++ +. +.++-.++|......
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~------~P--d~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVP------PP--DEEARKEIFKIHTRS 637 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeC------Cc--CHHHHHHHHHHHhcC
Confidence 34456667766654322201 123444 677 66 888888888776643
No 124
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.53 E-value=0.00032 Score=67.14 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=67.5
Q ss_pred cccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752 190 HFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP 267 (401)
Q Consensus 190 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 267 (401)
++........+++..- .....-+.|+|..|+|||.||..+++. ....-..+.++++ ..++.++-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC
Confidence 3444444555555431 113456889999999999999999984 3333233455544 34555555544221
Q ss_pred CCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH--HHhhC-CCC-CCCcEEEEecCC
Q 015752 268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID--VEELL-PDD-ENGSRVFITVTD 330 (401)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~--l~~~l-~~~-~~gs~iivTTR~ 330 (401)
+... .+.. + .+-=||||||+-. ....|.. +...+ ... ..+..+|+||.-
T Consensus 207 ---------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ---------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2222 2222 2 3566899999965 3456643 44433 221 245568888874
No 125
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00044 Score=67.29 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=64.2
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc-Ce-EEEEEcCCC-CCHHHHHHHHHHHcCCCCCC
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF-DC-HAWVRVSLD-YDFRRILDDIIKSVIPPSRV 270 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~ 270 (401)
...++++.+..-..+. -+.|+|.+|+|||||++.+++ .+.... +. ++|+.+.+. ..+.+++..+...+......
T Consensus 119 ~~~RvID~l~PiGkGQ-R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQ-RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCCc-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3445777776533333 457999999999999999887 333222 33 477777775 46778888887766543211
Q ss_pred ccccCc-CHHHHHHHHHHHc--CCceEEEEEeCCC
Q 015752 271 SVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVF 302 (401)
Q Consensus 271 ~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~ 302 (401)
...... ........+.+++ +|++++||+|++.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 100010 1111222233333 5899999999984
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.00019 Score=78.00 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=76.7
Q ss_pred CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-+..++.+.+.+.. ......++.++|++|+|||.||+.+.. .+-+.....+-++.+.-.. . .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~-~---~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQE-A---H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhh-h---h
Confidence 6789999999999888853 123455789999999999999988876 2211112222222222110 0 0
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF 325 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii 325 (401)
.+..-++.+.+. ... ....+...+++ ....+|+||++.. +++.++.|...+.++. ..+-||
T Consensus 640 ~~~~l~g~~~gy---vg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 640 TVSRLKGSPPGY---VGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhccccCCCCCc---ccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 111111221110 111 22233333333 4567999999977 6777888877776542 456677
Q ss_pred EecCC
Q 015752 326 ITVTD 330 (401)
Q Consensus 326 vTTR~ 330 (401)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 78764
No 127
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.51 E-value=0.0011 Score=72.29 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-+..++.+...+... +....++.++|++|+|||+||+.+++ .....-...+.+..+.-.. .....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-KHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-hhhHH
Confidence 56889999988888887531 22235788999999999999999986 2211112234444432111 11111
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF 325 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii 325 (401)
. -++.+.. -... ....+...++ ....-+|+||++.. ++..+..|...+.++. ..+-||
T Consensus 645 ~---LiG~~pg---y~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 645 R---LVGAPPG---YVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred H---HhCCCCc---ccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 1 1222211 0011 1122222222 12335999999986 6778888877765431 223377
Q ss_pred EecCC
Q 015752 326 ITVTD 330 (401)
Q Consensus 326 vTTR~ 330 (401)
+||..
T Consensus 716 ~TSN~ 720 (857)
T PRK10865 716 MTSNL 720 (857)
T ss_pred EeCCc
Confidence 78875
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.48 E-value=0.0012 Score=61.75 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=108.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE-EEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW-VRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|-+..+.-|.+.+.. ........+|++|.|||+-|..+....--.+-|.+++- .++|..-... +
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-v-------- 104 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-V-------- 104 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-c--------
Confidence 7788988888888888876 45678889999999999988777653222455655432 2333321111 0
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc--CCce-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhchh
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYL--TNKK-YFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLEM 339 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~ 339 (401)
... ... +...+........ .-++ =.||||++.. ..+.|..|+..+.+-...++.|+.+.. ..+..-+
T Consensus 105 vr~-----Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi-- 176 (346)
T KOG0989|consen 105 VRE-----KIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL-- 176 (346)
T ss_pred hhh-----hhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH--
Confidence 000 000 2222222111111 0134 3678999977 788999999888776666776554443 2221111
Q ss_pred CCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
.-+-..|+|+ +| .+++...-+...+-. ++.... ...-+.|+ .|+|.|.
T Consensus 177 ----~SRC~KfrFk-~L--~d~~iv~rL~~Ia~~---E~v~~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 ----VSRCQKFRFK-KL--KDEDIVDRLEKIASK---EGVDID---DDALKLIAKISDGDLR 225 (346)
T ss_pred ----HhhHHHhcCC-Cc--chHHHHHHHHHHHHH---hCCCCC---HHHHHHHHHHcCCcHH
Confidence 0033356666 88 999999999888842 222111 45567888 8888874
No 129
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00097 Score=71.32 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=86.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC---cccc-cCeEEEEEcCCCCCHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH---VKFY-FDCHAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 261 (401)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+++... +... .++.+|.. +... ++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh
Confidence 579999999999999887632 23345799999999999999986311 1111 13444421 1111 11
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD--D-------SEIWIDVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~iivTTR~~ 331 (401)
. +. ....+.+.....+.+.+ +..+.+|+||++.. . ..+...+..++... ..-++|-+|..+
T Consensus 255 a---G~-----~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 255 A---GT-----KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred c---cc-----chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 11 00012233333333333 34678999999963 0 11222223322222 234555555544
Q ss_pred hHHhhch-----hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 332 DLLASLE-----MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 332 ~v~~~~~-----~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+...... .+....+.++ ++ +.+++..++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~------eP--s~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDIT------EP--SIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeC------CC--CHHHHHHHHHHHH
Confidence 4321110 0133445888 89 9999999999764
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.45 E-value=0.0031 Score=68.92 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=77.4
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|.+..++.+.+.+... .....++.++|++|+|||++|+.+.. .....-...+.+..+.-.... ...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~-~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKH-SVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccc-hHH
Confidence 66899999999999888642 12245788999999999999999987 222212233344444321111 111
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF 325 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii 325 (401)
.-++.+.. -... ....+...++. ....+|+||++.. .++.+..|...|.++. .++-||
T Consensus 642 ---~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 642 ---RLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred ---HhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11222211 0111 22233333332 2335899999987 7788888888775541 234477
Q ss_pred EecCC
Q 015752 326 ITVTD 330 (401)
Q Consensus 326 vTTR~ 330 (401)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 78776
No 131
>PRK09183 transposase/IS protein; Provisional
Probab=97.43 E-value=0.00045 Score=64.66 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+.|+|++|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3577999999999999999976
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.43 E-value=0.0014 Score=65.69 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=86.6
Q ss_pred CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.+..+++|.+.+.- . -....-+.++|++|+|||++|+.+++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 6788999999888887632 1 12345677999999999999999998 444443 222111
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C----------ch---hHHHHHhhCCC--
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D----------SE---IWIDVEELLPD-- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~----------~~---~~~~l~~~l~~-- 317 (401)
.+ .....+. ....+...+.....+.+.+|+||++.. . .+ .+..+...+..
T Consensus 252 eL----~~k~~Ge---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 EL----IQKYLGD---------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred hh----hhhhcch---------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 11 1111111 122222223323345788999998742 0 00 11122222221
Q ss_pred CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 318 DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 318 ~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
...+.+||+||...+..... +.+..... .++ +. +.++..++|..++..
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~------~P--d~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP------NP--DEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC------CC--CHHHHHHHHHHHHhc
Confidence 12356788888766543332 00122333 677 77 889999999987643
No 133
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0015 Score=62.81 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=77.1
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-------------------ccCeEEEEEc
Q 015752 187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVRV 247 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 247 (401)
.++|-+....++..+..........+.+.|++|+||||+|..+.+..--.. ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777888888888875443444588999999999999988876321111 1123334443
Q ss_pred CCCCC---HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752 248 SLDYD---FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 248 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (401)
+.... ..+.++++.+....... .++.-++++|++.. ..+.-..+...+-.....+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 33332 22333333333222210 25677899999977 55556677777666667888
Q ss_pred EEEecCCh
Q 015752 324 VFITVTDP 331 (401)
Q Consensus 324 iivTTR~~ 331 (401)
+|++|...
T Consensus 142 ~il~~n~~ 149 (325)
T COG0470 142 FILITNDP 149 (325)
T ss_pred EEEEcCCh
Confidence 88888743
No 134
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.40 E-value=0.0012 Score=58.10 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cCCCCCHHH------HHHHHHHHcCCCCCCccccCc--C
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VSLDYDFRR------ILDDIIKSVIPPSRVSVIIGE--D 277 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~------~~~~i~~~l~~~~~~~~~~~~--~ 277 (401)
-.+++|+|..|+|||||.+.++.- . ......+++. +.. .+... .+.++++.++........... .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 358999999999999999999873 2 2233444432 221 12211 111245555443211111222 2
Q ss_pred HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChhHHhh
Q 015752 278 YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-EN-GSRVFITVTDPDLLAS 336 (401)
Q Consensus 278 ~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~~~ 336 (401)
-+...-.+.+.+...+-++++|+.-. |....+.+...+..- .. +..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 23333445556667788999999866 555555555554432 22 5678888888776543
No 135
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00085 Score=62.06 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII 274 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 274 (401)
+..+.+....-..+...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-......
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~------- 149 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNS------- 149 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhc-------
Confidence 33444444322223457889999999999999999983 333334455553 344554444333211
Q ss_pred CcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCC
Q 015752 275 GEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID--VEELLPD-DENGSRVFITVTD 330 (401)
Q Consensus 275 ~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~iivTTR~ 330 (401)
..+... +.+.+. +.=||||||+.. ...+|.. +...+.. -.+...+||||..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 002222 223343 345889999966 3445553 2222221 1223457777764
No 136
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0023 Score=61.61 Aligned_cols=171 Identities=9% Similarity=0.021 Sum_probs=95.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-------------ccccCeEEEEEcCCCCC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-------------KFYFDCHAWVRVSLDYD 252 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs~~~~ 252 (401)
.+++|-+...+.+...+..+ .-.....++|+.|+||+++|..+.+..-- ....+...|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 56889899889898888653 22468889999999999988777542110 11223334443210000
Q ss_pred HHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 015752 253 FRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF 325 (401)
Q Consensus 253 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii 325 (401)
-..+-..-+...+.... .... ..++. ..+.+.+ .+++-++|+|++.. +......|...+-+.+ .+.+|
T Consensus 83 g~~~~~~~~~~~~~~~~---~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 83 GKLITASEAEEAGLKRK---APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccchhhhhhcccccc---ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000011111110000 0011 22232 2333333 35677899999877 6677788887776655 44555
Q ss_pred Eec-CChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 326 ITV-TDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 326 vTT-R~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
++| ....+...+. +.-.. ++. ++ ++++..+.+.+...
T Consensus 158 Li~~~~~~Ll~TI~--SRcq~i~f~------~l--~~~~~~~~L~~~~~ 196 (314)
T PRK07399 158 LIAPSPESLLPTIV--SRCQIIPFY------RL--SDEQLEQVLKRLGD 196 (314)
T ss_pred EEECChHhCcHHHH--hhceEEecC------CC--CHHHHHHHHHHhhc
Confidence 444 4444444441 22233 888 99 99999999988753
No 137
>PRK10536 hypothetical protein; Provisional
Probab=97.37 E-value=0.002 Score=59.53 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=40.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW 244 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 244 (401)
..+.++......+..+|.. ..++.+.|+.|.|||+||..+..+.-..+.|+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 5577888889999998865 248899999999999999988764322344554443
No 138
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=9.2e-05 Score=65.22 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.-+.++|.+|+|||.||..+.+. ...+--.+.|++ ..+++..+-..-... ..... +. .+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~~~~~~---------~~~~~---~~-~l 106 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQSRSDG---------SYEEL---LK-RL 106 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHCCHCCT---------THCHH---HH-HH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceecccccccccc---------chhhh---cC-cc
Confidence 45889999999999999999873 322223455664 344555543211110 22222 22 22
Q ss_pred CCceEEEEEeCCCC-CchhHHH--HHhhCCCC-CCCcEEEEecCCh
Q 015752 290 TNKKYFIVLDDVFD-DSEIWID--VEELLPDD-ENGSRVFITVTDP 331 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~~-~~gs~iivTTR~~ 331 (401)
. +-=||||||+-. ....|.. +...+... .++ .+||||.-.
T Consensus 107 ~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 107 K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred c-cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 2 335788999976 2233321 11111111 123 577888754
No 139
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.004 Score=60.30 Aligned_cols=72 Identities=8% Similarity=0.142 Sum_probs=49.3
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++-++|+|++.. +....+.|...+-+...++.+|+||.+.+ +...+.. ....+.+. ++ +.+++.+.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~------~~--~~~~~~~~L~ 175 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACP------LP--SNEESLQWLQ 175 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCC------Cc--CHHHHHHHHH
Confidence 4444557799987 77888888888877666788887777754 3333311 11223777 88 9999988887
Q ss_pred Hhh
Q 015752 369 LHY 371 (401)
Q Consensus 369 ~~a 371 (401)
+..
T Consensus 176 ~~~ 178 (328)
T PRK05707 176 QAL 178 (328)
T ss_pred Hhc
Confidence 754
No 140
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.35 E-value=0.00018 Score=69.79 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
..+.+.++|.|||||||++-.+.+ +...|..-.|+. ...-.+...+.-.+...++.... .-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 467899999999999999998876 667787555554 44444444455555554554321 3344556677
Q ss_pred HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCCCcce-ecccccCCCCCCCCh-HHHH
Q 015752 287 DYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLK-HEAW 364 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~-~ea~ 364 (401)
....++|.++|+||..+=...-..+...+..+...-.|+.|+|..... ..+.. .+. +| +. +++.
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~------~L--~~~d~a~ 148 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV------AGEVHRRVP------SL--SLFDEAI 148 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCC------cc--ccCCchh
Confidence 778899999999997440011122333444455566788899865433 22333 666 66 54 5899
Q ss_pred HHHHHhh
Q 015752 365 QFFILHY 371 (401)
Q Consensus 365 ~Lf~~~a 371 (401)
++|...+
T Consensus 149 ~lf~~ra 155 (414)
T COG3903 149 ELFVCRA 155 (414)
T ss_pred HHHHHHH
Confidence 9998876
No 141
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.33 E-value=0.0011 Score=60.65 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH-cCCCCCCc--ccc
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS-VIPPSRVS--VII 274 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~--~~~ 274 (401)
|-+.|..+-..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+ .++... ........ ...
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~ 87 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEP 87 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeC
Confidence 33334333344579999999999999999998863 32334678899887 5554443 233322 00000000 011
Q ss_pred Cc--CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 275 GE--DYQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 275 ~~--~~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
.+ +.......+..++..+.-++|+|.+-
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 88 SSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 11 22333444555555667799999983
No 142
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00058 Score=61.25 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH-HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR-RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
.+|.|+|+.|+||||++..+.. .........++. +..+.... .-...++.+- ....+.......++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~--------~vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIEFVHESKRSLINQR--------EVGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCccccccCccceeeec--------ccCCCccCHHHHHHHH
Confidence 4788999999999999998776 333333334443 22221100 0000011110 0111223344556777
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
|...+=+|++|.+.+ .+.+..+.... ..|..++.|+...++...+
T Consensus 71 Lr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 71 LRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred hcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHHHH
Confidence 766777999999987 66555544432 2356688888887765443
No 143
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.31 E-value=0.0021 Score=56.49 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhccc-Cc--cc---ccC--eEEEEEcCCCCCHHHHHHHHHHHcCCCCC-CccccCc---C
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNN-HV--KF---YFD--CHAWVRVSLDYDFRRILDDIIKSVIPPSR-VSVIIGE---D 277 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~---~ 277 (401)
.+++|+|+.|+|||||.+.+..+. .+ .. .|. ...|+ .+ .+.+..++.... ....... .
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 588999999999999999886321 11 10 111 12232 21 355666664321 1111222 2
Q ss_pred HHHHHHHHHHHcCCc--eEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752 278 YQLKKSILRDYLTNK--KYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 278 ~~~l~~~l~~~L~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 335 (401)
..+... +...+..+ +-++++|..-. |....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~-laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVK-LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 233333 44444455 67888899765 555555555444331 24667888888887654
No 144
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0039 Score=62.06 Aligned_cols=117 Identities=21% Similarity=0.151 Sum_probs=73.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT 290 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 290 (401)
++.|.|+.++||||+++.+.. ..... .++++......... ...+....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~---------------------~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRI---------------------ELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchh---------------------hHHHHHHHHHHhhc
Confidence 999999999999999977665 22222 44444322211010 11111111111112
Q ss_pred CceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH-----hhchhCCCcce-ecccccCCCCCCCChHHHH
Q 015752 291 NKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL-----ASLEMENGEKI-RLDSVLFGGPLIRLKHEAW 364 (401)
Q Consensus 291 ~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-----~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~ 364 (401)
.++.+|+||.|.. ...|......+.+..+. +|++|+-+.... ... .+.... .+- || +..|-.
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L--~GR~~~~~l~------Pl--SF~Efl 160 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESL--AGRGKDLELY------PL--SFREFL 160 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhc--CCCceeEEEC------CC--CHHHHH
Confidence 2778999999999 88899888888776655 888888876543 332 133333 888 99 998886
Q ss_pred H
Q 015752 365 Q 365 (401)
Q Consensus 365 ~ 365 (401)
.
T Consensus 161 ~ 161 (398)
T COG1373 161 K 161 (398)
T ss_pred h
Confidence 5
No 145
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.0012 Score=59.53 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC-CCc---cccCc-CHHHH
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS-RVS---VIIGE-DYQLK 281 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-~~~---~~~~~-~~~~l 281 (401)
..-.++.|+|++|+|||+++.++... .......++|++... ++...+.+ ++....... ... +..+. +....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 34579999999999999999988763 323346789998876 55554433 333220000 000 01111 22334
Q ss_pred HHHHHHHcCC-ceEEEEEeCCC
Q 015752 282 KSILRDYLTN-KKYFIVLDDVF 302 (401)
Q Consensus 282 ~~~l~~~L~~-kr~LlVlDdv~ 302 (401)
...+.+.+.. +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555543 56699999984
No 146
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.28 E-value=0.0016 Score=57.30 Aligned_cols=120 Identities=8% Similarity=-0.024 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--------cc-cCc--CH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--------VI-IGE--DY 278 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------~~-~~~--~~ 278 (401)
.+++|.|..|+|||||++.+..-... -...+++.-. ++......+-..++...... +. ... .-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 57899999999999999999863211 1222332110 01110001111111000000 00 111 12
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 279 QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 279 ~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
+...-.+.+.+-.++-+++||+... |....+.+...+..-..+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2333344555567778899999876 55444444444432223667888888887654
No 147
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.27 E-value=0.00037 Score=58.59 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=61.4
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-ccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP 267 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 267 (401)
||....+.++.+.+..-......|.|.|..|+||+++|+.++..... ...|..+- ... .. .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-----~~~l~~---- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-----AELLEQ---- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC-----HHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc-----HHHHHH----
Confidence 56667777777777542233456789999999999999998873222 11221110 000 00 111111
Q ss_pred CCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEecCCh
Q 015752 268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFITVTDP 331 (401)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~ 331 (401)
-+.--|+|+|+.. +.+....|...+... ....|+|.||+..
T Consensus 68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1334577999977 666666777666533 4678999998853
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0043 Score=61.21 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=81.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
....+.|+|..|.|||.|++.+.+ ...........+.++ ......+++..+... -...+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 467899999999999999999998 555555533333332 334444444443322 1234455
Q ss_pred HcCCceEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------hHHhhchhCCCcce-ecccccCC
Q 015752 288 YLTNKKYFIVLDDVFD--DSEIWI-DVEELLPD-DENGSRVFITVTDP---------DLLASLEMENGEKI-RLDSVLFG 353 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~-~l~~~~~~ 353 (401)
.. .-=++++||++- ..+.|+ .+...|.. ...|..||+|++.. .+.+.. ...-+ .++
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~---~~Gl~~~I~----- 242 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL---EWGLVVEIE----- 242 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH---hceeEEeeC-----
Confidence 54 334889999966 122232 22222221 12344899999653 233333 33344 999
Q ss_pred CCCCCChHHHHHHHHHhhC
Q 015752 354 GPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 354 ~~L~~~~~ea~~Lf~~~a~ 372 (401)
|+ +.+....++.+++.
T Consensus 243 -~P--d~e~r~aiL~kka~ 258 (408)
T COG0593 243 -PP--DDETRLAILRKKAE 258 (408)
T ss_pred -CC--CHHHHHHHHHHHHH
Confidence 99 99999999999874
No 149
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.0022 Score=58.21 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+++.+.. .+...|.|.|.+|+||||||..+.+
T Consensus 8 ~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNN--NGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4444443 3456788999999999999999987
No 150
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.26 E-value=0.0041 Score=53.88 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=68.6
Q ss_pred cccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc------------------cccCeEEEEEcCCC---
Q 015752 192 ERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK------------------FYFDCHAWVRVSLD--- 250 (401)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~vs~~--- 250 (401)
+...+.|.+.+..+ .-...+.++|+.|+||+++|..+.+..--. .......|+.-...
T Consensus 3 ~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 3 EEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 44455566655442 334567899999999999998876521111 11233344432222
Q ss_pred CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752 251 YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT 329 (401)
Q Consensus 251 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR 329 (401)
..++.+ +.+...+.... ..+++=++|||++.. ..+.+..|+..+-+...++.+|++|+
T Consensus 82 i~i~~i-r~i~~~~~~~~--------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 82 IKIDQI-REIIEFLSLSP--------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp BSHHHH-HHHHHHCTSS---------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred hhHHHH-HHHHHHHHHHH--------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 222222 13333332221 024566899999987 77888888888877777899988888
Q ss_pred Chh
Q 015752 330 DPD 332 (401)
Q Consensus 330 ~~~ 332 (401)
+.+
T Consensus 141 ~~~ 143 (162)
T PF13177_consen 141 NPS 143 (162)
T ss_dssp -GG
T ss_pred ChH
Confidence 765
No 151
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.26 E-value=0.0022 Score=58.81 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cc-cC
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VI-IG 275 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~-~~ 275 (401)
..-.++.|.|.+|+|||+|+.+++........ ...++|++....++...+ .+++...+...... .. ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 34578999999999999999999753222221 358899998887765444 33444433221110 00 11
Q ss_pred c-CHHHHHHHHHHHcC-C-ceEEEEEeCCC
Q 015752 276 E-DYQLKKSILRDYLT-N-KKYFIVLDDVF 302 (401)
Q Consensus 276 ~-~~~~l~~~l~~~L~-~-kr~LlVlDdv~ 302 (401)
. +.......+.+.+. . +.-|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1 22334444555553 3 67799999984
No 152
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0011 Score=67.17 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=66.0
Q ss_pred CCccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 185 RLDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
+.++-|.++.+.++.+++..- -...+=|.++|++|+|||.||+.+++ +..-.| +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch----
Confidence 378889999999998887641 12345678999999999999999998 433333 333332
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
+|+....+. +.+.+.+...+.-..-++++.+|++.-
T Consensus 258 ----eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 344444333 555565556666667899999999965
No 153
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.001 Score=62.43 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccc-cCeEEEEEc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY-FDCHAWVRV 247 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 247 (401)
...+.++|.+|+|||+||..+++ .+... ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 45688999999999999999998 44333 344566654
No 154
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.21 E-value=0.0023 Score=54.48 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD 252 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (401)
++.|.|.+|+||||++..+.. .....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 367999999999999999987 3333345677887766543
No 155
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.01 Score=57.58 Aligned_cols=166 Identities=8% Similarity=0.011 Sum_probs=85.8
Q ss_pred cccc-ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 187 DISH-FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 187 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++| -+..++.+...+..+ .-.....++|+.|+||||+|..+.+..--.+..... .+..-...+.+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4556 455566666666542 334567899999999999998886521111100000 0000000001100000
Q ss_pred CCCCCc-cccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhc
Q 015752 266 PPSRVS-VIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASL 337 (401)
Q Consensus 266 ~~~~~~-~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~ 337 (401)
++.... .+-.. ..+++.+.+... ..+.+=++|+|++.. +.+..+.|...+-+...++.+|++|.+.. +...+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 000000 00001 223333322221 234556799999876 66677888888887777787877776543 33333
Q ss_pred hhCCCcce-ecccccCCCCCCCChHHHHHHHHHh
Q 015752 338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILH 370 (401)
Q Consensus 338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~ 370 (401)
...-.+ ++. ++ ++++..+.+.+.
T Consensus 158 --rSRc~~i~~~------~~--~~~~~~~~L~~~ 181 (329)
T PRK08058 158 --LSRCQVVEFR------PL--PPESLIQRLQEE 181 (329)
T ss_pred --HhhceeeeCC------CC--CHHHHHHHHHHc
Confidence 122233 788 88 888887777653
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.18 E-value=0.0015 Score=71.17 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=75.1
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-+..++.+.+.+... +.....+.++|+.|+|||+||+.+.+ .+-..-...+-+..+.-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc---
Confidence 66889888888888877531 22245677899999999999999876 2211112233333433211111
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCce-EEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEE
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKK-YFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRV 324 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~i 324 (401)
+..-++.+.+ -... ....+ .+.++.++ .+|+||++.. +++.++.|...+..+ ...+-|
T Consensus 584 -~~~l~g~~~g---yvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 584 -VSKLIGSPPG---YVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred -HHHhcCCCCc---ccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 1111222111 0111 22223 33444444 5889999987 677888888777653 134556
Q ss_pred EEecCC
Q 015752 325 FITVTD 330 (401)
Q Consensus 325 ivTTR~ 330 (401)
|+||..
T Consensus 656 I~Tsn~ 661 (821)
T CHL00095 656 IMTSNL 661 (821)
T ss_pred EEeCCc
Confidence 777764
No 157
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0093 Score=60.78 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
..=|.+||++|+|||-||+.++| +.+-.| +++-.+ ++++..-+. +...+.....+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVGE---------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVGE---------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhhh---------HHHHHHHHHHHh
Confidence 44577999999999999999999 555555 333222 222222121 333333334444
Q ss_pred cCCceEEEEEeCCCC------Cch------hHHHHHhhCCCC--CCCcEEEEecCChhHHhh--chhCCCcce-eccccc
Q 015752 289 LTNKKYFIVLDDVFD------DSE------IWIDVEELLPDD--ENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVL 351 (401)
Q Consensus 289 L~~kr~LlVlDdv~~------~~~------~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~ 351 (401)
=..-++.|.||.+.. +.. ...+|..-+... ..|--||-.|..+++..- .+-+.-+.+ -++
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~--- 677 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG--- 677 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec---
Confidence 346899999999854 112 234455555432 345566767766665322 211233444 455
Q ss_pred CCCCCCCChHHHHHHHHHhhC--CCCCcCcccchHHHHHHHHHhccCCC
Q 015752 352 FGGPLIRLKHEAWQFFILHYG--SMPLENYLQGEAFRQLGDKFVLCWSY 398 (401)
Q Consensus 352 ~~~~L~~~~~ea~~Lf~~~a~--~~~~~~~~~~~~l~~i~~~i~~C~~~ 398 (401)
.- +.+|-..+++.... ..+.... -.|.+||+. -+|.||
T Consensus 678 ---lP--n~~eR~~ILK~~tkn~k~pl~~d---Vdl~eia~~-~~c~gf 717 (802)
T KOG0733|consen 678 ---LP--NAEERVAILKTITKNTKPPLSSD---VDLDEIARN-TKCEGF 717 (802)
T ss_pred ---CC--CHHHHHHHHHHHhccCCCCCCcc---cCHHHHhhc-ccccCC
Confidence 55 88999999998886 2233222 224444331 267776
No 158
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.00094 Score=62.25 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
+..-+.++|.+|+|||.||..+.+... +..+ .+.++ +..+++.++........ ... .|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~------~~~el~~~Lk~~~~~~~--------~~~----~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFI------TAPDLLSKLKAAFDEGR--------LEE----KLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEE------EHHHHHHHHHHHHhcCc--------hHH----HHHH
Confidence 455678999999999999999999433 2223 34444 44566666665544321 112 2222
Q ss_pred HcCCceEEEEEeCCCC
Q 015752 288 YLTNKKYFIVLDDVFD 303 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~ 303 (401)
.+ .+-=||||||+-.
T Consensus 164 ~l-~~~dlLIiDDlG~ 178 (254)
T COG1484 164 EL-KKVDLLIIDDIGY 178 (254)
T ss_pred Hh-hcCCEEEEecccC
Confidence 12 2335899999966
No 159
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.13 E-value=0.0043 Score=66.83 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|.+..++++.+.+... -...+-+.++|++|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 77899999999888776321 12235678999999999999999988
No 160
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.12 E-value=0.0069 Score=52.59 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC---eEEEEEcCCCCCH--HHHHHHHHHHcCCCCCCccccCcCHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD---CHAWVRVSLDYDF--RRILDDIIKSVIPPSRVSVIIGEDYQLK 281 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 281 (401)
.+++|+|..|.|||||++.+..-.... .. ++ ...+ +.+.... ..+.+.+... ... ..+ .-+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~-~~~-----~LS-~G~~~ 98 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP-WDD-----VLS-GGEQQ 98 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc-CCC-----CCC-HHHHH
Confidence 578999999999999999998632211 11 11 1122 2332211 1222222210 010 122 22333
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
.-.+.+.+..++-++++|.--. |......+...+... +..||++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3444555556777889999765 555555555544432 356888888876654
No 161
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.12 E-value=0.0014 Score=61.28 Aligned_cols=92 Identities=12% Similarity=0.238 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc------CHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE------DYQ 279 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~------~~~ 279 (401)
.-++|.|.+|+|||||++.+++ .++.+|. .++++-+++... +.++..++...-....... ...++ ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998 5554554 566667777654 4455555554311110000 00111 111
Q ss_pred HHHHHHHHHc--C-CceEEEEEeCCCC
Q 015752 280 LKKSILRDYL--T-NKKYFIVLDDVFD 303 (401)
Q Consensus 280 ~l~~~l~~~L--~-~kr~LlVlDdv~~ 303 (401)
...-.+.+++ + |+.+||++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2233445555 3 8999999999843
No 162
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0017 Score=62.74 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.-+.++|.+|+|||+||..+++ .+-..-..++++++ .+++..+...-... ..+... .+ +.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~-------~~~~~~---~~-~~l 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNN-------DKELEE---VY-DLL 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhcc-------chhHHH---HH-HHh
Confidence 5688999999999999999988 33333335566644 33444333221111 001111 12 222
Q ss_pred CCceEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCC
Q 015752 290 TNKKYFIVLDDVFD-DSEIW--IDVEELLPDD-ENGSRVFITVTD 330 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~iivTTR~ 330 (401)
. .-=||||||+.. ....| ..|...+... ..+..+||||..
T Consensus 245 ~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 245 I-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred c-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 235899999955 12233 3333333321 234568888875
No 163
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.10 E-value=0.0031 Score=57.30 Aligned_cols=100 Identities=16% Similarity=0.044 Sum_probs=54.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc---ccc
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS---VII 274 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~ 274 (401)
|-+.|..+=..-.++.|.|.+|+||||++.+++.. ....-..++|++....+. .-+++++.......... ...
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 83 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEP 83 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeC
Confidence 33434333344578999999999999999998863 222234677887655543 33334433211000000 011
Q ss_pred CcCHHH---HHHHHHHHcCCceEEEEEeCCC
Q 015752 275 GEDYQL---KKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 275 ~~~~~~---l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
. +..+ ....+...+..+.-+||+|.+-
T Consensus 84 ~-~~~~~~~~~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 84 M-DFNEQGRAIQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred C-CHHHHHHHHHHHHHHHhcCCcEEEEechH
Confidence 1 2222 2334445555456799999984
No 164
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.10 E-value=0.00038 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.015 Score=58.41 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHH
Q 015752 206 SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSI 284 (401)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~ 284 (401)
..++..+.+.|++|+|||+||..++. ...|+.+--++...- ++.. ++ ....+...
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s-------EsaKc~~i~k~ 590 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS-------ESAKCAHIKKI 590 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc-------HHHHHHHHHHH
Confidence 34567788999999999999999976 566775443321110 1110 00 11222223
Q ss_pred HHHHcCCceEEEEEeCCCCCchhH------------HHHHhhCCCC-CCCcE--EEEecCChhHHhhchh-CCCcce-ec
Q 015752 285 LRDYLTNKKYFIVLDDVFDDSEIW------------IDVEELLPDD-ENGSR--VFITVTDPDLLASLEM-ENGEKI-RL 347 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~~~~~~------------~~l~~~l~~~-~~gs~--iivTTR~~~v~~~~~~-~~~~~~-~l 347 (401)
.....+..=-.||+||+.. --+| ..|+..|... ..|-| |+-||....+...|.+ .+.... .+
T Consensus 591 F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHhhcCcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 3333355667899999965 3333 2333334332 23334 4557887888887732 223333 55
Q ss_pred ccccCCCCCCCChHHHHHHHHHhh
Q 015752 348 DSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 348 ~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+ -| ...++..+.++..-
T Consensus 670 p------nl-~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 670 P------NL-TTGEQLLEVLEELN 686 (744)
T ss_pred C------cc-CchHHHHHHHHHcc
Confidence 5 55 13477777777664
No 166
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.08 E-value=0.0017 Score=60.71 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc--
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE-- 276 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~-- 276 (401)
-.+.=|+|.+|+|||+|+.+++-...+.. .=..++|++-...+....+. +|++......... ....+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 45889999999999999988865433322 22469999998889877764 5666654321111 01111
Q ss_pred CHHHHHHHHHHHc-CCceEEEEEeCCC
Q 015752 277 DYQLKKSILRDYL-TNKKYFIVLDDVF 302 (401)
Q Consensus 277 ~~~~l~~~l~~~L-~~kr~LlVlDdv~ 302 (401)
+...+...+...+ ..+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 3333334444444 3455699999983
No 167
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.08 E-value=0.0054 Score=55.92 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc------CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752 200 DLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF------DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V 272 (401)
Q Consensus 200 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 272 (401)
+.|..+-..-.++.|.|.+|+|||+|+..++... ...- ..++|+.....++...+. .+........... .
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~ 86 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLD 86 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhc
Confidence 3333333445799999999999999999987532 1222 467899887777755443 3333322211100 0
Q ss_pred c---cCc-CHHHHHHHHHHHcC----CceEEEEEeCCCC
Q 015752 273 I---IGE-DYQLKKSILRDYLT----NKKYFIVLDDVFD 303 (401)
Q Consensus 273 ~---~~~-~~~~l~~~l~~~L~----~kr~LlVlDdv~~ 303 (401)
. ... +.+++...+..... .+.-|||+|.+..
T Consensus 87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 0 111 45555555555542 3556999999853
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.08 E-value=0.00057 Score=66.20 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=40.7
Q ss_pred CccccccccHHHHHHHHhcC----CCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEG----SSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999752 335688999999999999999999874
No 169
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.08 E-value=0.0061 Score=51.64 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+..-. ..+ ..+...-.+...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~----~lS-~G~~~rv~laral 85 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE----QLS-GGEKMRLALAKLL 85 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc----cCC-HHHHHHHHHHHHH
Confidence 5889999999999999999986322 223344432100 000000 011 1222233345555
Q ss_pred CCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 290 TNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
..++-++++|+.-. |......+...+... +..||++|.+.+....
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 56777899999866 555556665555432 2468888888766544
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0016 Score=68.89 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=79.8
Q ss_pred CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-+..+..+.+.+.. .+....+....|+.|+|||.||+.+.. .+-+.=+..+-+..|.-. ...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~-EkH--- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYM-EKH--- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHH-HHH---
Confidence 6689999999988888864 234566888899999999999998876 221111333333333311 111
Q ss_pred HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceE-EEEEeCCCC-CchhHHHHHhhCCCC----CC-------CcEEE
Q 015752 259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKY-FIVLDDVFD-DSEIWIDVEELLPDD----EN-------GSRVF 325 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~----~~-------gs~ii 325 (401)
.+..-++.+.+- - ..++ -..|.+..+.++| +|.||.+.. .++.++-+...|.++ +. ++-||
T Consensus 565 sVSrLIGaPPGY----V-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 565 SVSRLIGAPPGY----V-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHhCCCCCC----c-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 122222332211 1 1111 2345556667777 788999987 577778888877765 22 34567
Q ss_pred EecCC
Q 015752 326 ITVTD 330 (401)
Q Consensus 326 vTTR~ 330 (401)
+||.-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 77764
No 171
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.0012 Score=57.88 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV 245 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 245 (401)
...+|.+.|++|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456899999999999999999998 555555555555
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0013 Score=70.29 Aligned_cols=116 Identities=11% Similarity=0.146 Sum_probs=66.1
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|-++.++.+.+.+... ......+.++|++|+|||+||+.+.. .... ..+.++.+.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEeechhhcccc----
Confidence 44778888888888887631 22345788999999999999999987 3322 22334433321111
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcC-CceEEEEEeCCCC-CchhHHHHHhhCCC
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD-DSEIWIDVEELLPD 317 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~-~kr~LlVlDdv~~-~~~~~~~l~~~l~~ 317 (401)
.+..-++.+... ... .... +.+.+. ....+|+||++.. .++.+..|...+.+
T Consensus 529 ~~~~LiG~~~gy---vg~~~~g~----L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TVSRLIGAPPGY---VGFDQGGL----LTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cHHHHcCCCCCc---ccccccch----HHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 111112222110 000 1112 222332 3446999999987 67777877776654
No 173
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0012 Score=57.66 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 174
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0084 Score=61.57 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=88.6
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
+++-|.++-+.+|.+.+.-. -+..+-|..+|+||+|||++|+.+.+ ..+-.| +.+..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence 66667777666665544321 24567788999999999999999998 444344 333221
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------chhHHHHHhhCCCCCCCc
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------SEIWIDVEELLPDDENGS 322 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~~~~gs 322 (401)
+++...-+. ++..+.+..++.=+--+++|.||.+.. . ...+.+|..-+.......
T Consensus 503 ----EL~sk~vGe---------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 ----ELFSKYVGE---------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred ----HHHHHhcCc---------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 122222221 333333333333344568888888754 1 112334444443322232
Q ss_pred EEE-E--ecCChhHHhhc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCc
Q 015752 323 RVF-I--TVTDPDLLASL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY 379 (401)
Q Consensus 323 ~ii-v--TTR~~~v~~~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~ 379 (401)
.|+ | |.|...+-..+ +-+..+.+ .++ +- +.+...++|..++...+..+.
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVp------lP--D~~aR~~Ilk~~~kkmp~~~~ 623 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVP------LP--DLEARLEILKQCAKKMPFSED 623 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeec------Cc--cHHHHHHHHHHHHhcCCCCcc
Confidence 333 2 44433332222 11234555 666 44 778888999999976666544
No 175
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.02 E-value=0.0049 Score=59.22 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V 272 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 272 (401)
|-+.|..+=..-.++-|+|.+|+|||+|+.+++-..... ..=..++|++....+++..+. ++++.++.+.... +
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLD 163 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcC
Confidence 333444333345788999999999999998876432221 112478999999988888765 4566665542210 0
Q ss_pred c---cCc-CHHH---HHHHHHHHcC-CceEEEEEeCCC
Q 015752 273 I---IGE-DYQL---KKSILRDYLT-NKKYFIVLDDVF 302 (401)
Q Consensus 273 ~---~~~-~~~~---l~~~l~~~L~-~kr~LlVlDdv~ 302 (401)
+ ... +.++ +...+...+. ++--|||+|.+-
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 0 011 2333 3334443443 455689999985
No 176
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.0015 Score=59.21 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
.+++.|+|+.|.|||||.+.+...... .+-...+|.. . .. ...+.++...+.....-....+ +...-..++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~-~~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-AT-IGLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cE-EeeeeeeeeeeCCccChhhccc-hHHHHHHHHHHH
Confidence 478899999999999999988732111 1111111110 0 00 0011222222222211000111 222222222222
Q ss_pred --cCCceEEEEEeCCCC--CchhHH----HHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 289 --LTNKKYFIVLDDVFD--DSEIWI----DVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 289 --L~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+..++.|++||..-. |+.+.. .+...+... ..+..+|+||.+.+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 246789999999976 333211 222233222 2345799999999887765
No 177
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0033 Score=54.87 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCC--CCCCcc------ccCcCHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIP--PSRVSV------IIGEDYQ 279 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~~~------~~~~~~~ 279 (401)
.+++|+|..|.|||||.+.++.- .. .....+++.-.. ....... ...++. +..... ..=+.-+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 58899999999999999999873 21 223333332100 0011111 011110 000000 0000112
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
...-.+...+..++-+++||+-.. |......+...+..-..+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 222334555566778999999876 555555554444332235678888888766543
No 178
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.0016 Score=58.07 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
.++.|+|..|.||||++..+.. +...+...++.+. ..++.......++.+++..... ..+. ...++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~-~~~~-~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA-IPVS-SDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc-eEeC-ChHHHHHHHHh-h
Confidence 4678899999999999988877 3333333334342 1112222233455555432110 0011 34455555555 3
Q ss_pred CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752 290 TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~ 331 (401)
.++.-+||+|.+.- +.++..++...+. ..|..||+|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 34556999999854 3333344444332 3578899999983
No 179
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.0037 Score=54.16 Aligned_cols=116 Identities=11% Similarity=-0.026 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
.+++|.|..|+|||||.+.++.-. ......+++.-.. ..+...... ..++.. ...+ .-+...-.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~----~qLS-~G~~qrl~lar 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV----YQLS-VGERQMVEIAR 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE----EecC-HHHHHHHHHHH
Confidence 488999999999999999998622 2234445543111 111111111 111110 0011 22333344555
Q ss_pred HcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 288 YLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+-.++-++++|+.-. |......+...+..- ..|..||++|.+......
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5566778889999866 555555555554332 236678888888765443
No 180
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.98 E-value=0.0046 Score=60.08 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-cc--
Q 015752 201 LLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-VI-- 273 (401)
Q Consensus 201 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~-- 273 (401)
.|..+=..-.++-|.|.+|+|||+|+.+++-..... ..-..++|+.....|++..+. ++++.++.+.... ++
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~ 196 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNII 196 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEE
Confidence 343333345788899999999999999886432221 112478999999999988765 4566665542211 00
Q ss_pred -cCc-CHHHH---HHHHHHHc-CCceEEEEEeCCC
Q 015752 274 -IGE-DYQLK---KSILRDYL-TNKKYFIVLDDVF 302 (401)
Q Consensus 274 -~~~-~~~~l---~~~l~~~L-~~kr~LlVlDdv~ 302 (401)
... +.+++ ...+...+ ..+--|||+|.+-
T Consensus 197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 111 33333 33333333 2345689999984
No 181
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.97 E-value=0.0067 Score=58.55 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V 272 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 272 (401)
+-+.|..+=..-.++-|+|++|+|||+++.+++........ =..++|++....++...+. ++++.++...... .
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~ 169 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLD 169 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhc
Confidence 33444333334678899999999999999998764222111 1479999998888877654 4445554332110 0
Q ss_pred -----ccCc--CHHHHHHHHHHHcCC--ceEEEEEeCCCC
Q 015752 273 -----IIGE--DYQLKKSILRDYLTN--KKYFIVLDDVFD 303 (401)
Q Consensus 273 -----~~~~--~~~~l~~~l~~~L~~--kr~LlVlDdv~~ 303 (401)
.... ....+...+...+.. +--|||+|.+-.
T Consensus 170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 0111 222344555555543 445999999843
No 182
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.00091 Score=61.12 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=34.2
Q ss_pred ccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 191 FERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 191 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
|.+-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56667788888864 345678999999999999999999987
No 183
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.96 E-value=0.00077 Score=56.63 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 184
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.95 E-value=0.0038 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.95 E-value=0.00074 Score=56.65 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752 212 VAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT 290 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 290 (401)
|.++|++|+|||+||+.+++ .. + ...-+.++...+..+++...--. .... .+.. ..+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~----~~~~-~~~~--~~l~~a~----- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS----NGQF-EFKD--GPLVRAM----- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET-----TTTT-CEEE---CCCTTH-----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec----cccc-cccc--ccccccc-----
Confidence 56899999999999999987 33 3 23345677777777654322211 1000 0110 0000000
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCC
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLP 316 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~ 316 (401)
.+..++|||++.. ++..+..|...+.
T Consensus 64 ~~~~il~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 64 RKGGILVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp HEEEEEEESSCGG--HHHHHTTHHHHS
T ss_pred cceeEEEECCcccCCHHHHHHHHHHHh
Confidence 1889999999975 4555555554443
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.94 E-value=0.0022 Score=57.53 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=63.5
Q ss_pred cccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC----CCC-----CHHH----H
Q 015752 190 HFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS----LDY-----DFRR----I 256 (401)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~~~----~ 256 (401)
.+.......++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-. +.. +..+ .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 455566777777773 4588899999999999998887654445788888877521 110 1000 1
Q ss_pred HHHHHHHcCCCCCCccccCcCHHHHHHH------HHHHcCCc---eEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 015752 257 LDDIIKSVIPPSRVSVIIGEDYQLKKSI------LRDYLTNK---KYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI 326 (401)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~------l~~~L~~k---r~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv 326 (401)
+.-+.+.+..-... . ..+.+... -..+++|+ ..+||+|..-+ .+.++..+.. ..+.||++|+
T Consensus 80 ~~p~~d~l~~~~~~----~-~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEELFGK----E-KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTTS-T----T-CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEE
T ss_pred HHHHHHHHHHHhCh----H-hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEE
Confidence 12222222111000 0 22222110 01234553 56999999866 5655555544 4567899998
Q ss_pred ecC
Q 015752 327 TVT 329 (401)
Q Consensus 327 TTR 329 (401)
+=-
T Consensus 152 ~GD 154 (205)
T PF02562_consen 152 TGD 154 (205)
T ss_dssp EE-
T ss_pred ecC
Confidence 754
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.013 Score=59.79 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred CccccccccHHHHHHHHh---c-----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752 186 LDISHFERGREELFDLLI---E-----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 257 (401)
.++.|.+..++.+.+... . +-...+-|.++|++|.|||.+|+.+.+ ...-.| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhH------H--
Confidence 677787665555543211 1 112346688999999999999999988 332222 111111 1
Q ss_pred HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C-------ch----hHHHHHhhCCCCCCCcEE
Q 015752 258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D-------SE----IWIDVEELLPDDENGSRV 324 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~-------~~----~~~~l~~~l~~~~~gs~i 324 (401)
+.....+. +...+...+...-...+++|.||++.. . .. ....+...+.....+--|
T Consensus 295 --l~~~~vGe---------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 --LFGGIVGE---------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred --hcccccCh---------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11111111 222333333322235789999999853 0 00 111222333332333445
Q ss_pred EEecCChhHHh-hc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 325 FITVTDPDLLA-SL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 325 ivTTR~~~v~~-~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
|.||.+..-.. .+ +-+..+.+ .++ .- +.++-.++|..+...
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~------lP--~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLD------LP--SLEEREKIFKIHLQK 407 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeC------Cc--CHHHHHHHHHHHHhh
Confidence 56776654211 11 11233445 676 66 888889999887743
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.93 E-value=0.0058 Score=59.23 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999888865323334577999999999999999975
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.0073 Score=54.79 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=72.0
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
..++|.+..++.|++--.. .+....-|.+||..|.|||.|++.+.+ .+.+..-..+=|+-++-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~------------ 125 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLA------------ 125 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHh------------
Confidence 7799999888888664422 222344567999999999999999988 554444332221111101
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEEEecCCh
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD---ENGSRVFITVTDP 331 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~iivTTR~~ 331 (401)
+...+...|+. ...||.|..||+.= +...++.|...+..+ .+...++..|.+.
T Consensus 126 -------------~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 -------------TLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------------hHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122222221 36899999999843 466788888887653 3445566655554
No 190
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.008 Score=52.86 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE------cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR------VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKS 283 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 283 (401)
.+++|+|..|+|||||.+.+..-.. .....+++. +.+... .+ .-+...-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~---------------------LS-gGq~qrv 80 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID---------------------LS-GGELQRV 80 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC---------------------CC-HHHHHHH
Confidence 5899999999999999999986221 122222221 111111 11 2223333
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|.--. |......+...+... ..+..||++|.+.......
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 45555666778899999865 555444444444321 1235688888887665543
No 191
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.88 E-value=0.0036 Score=60.13 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=57.1
Q ss_pred CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHH
Q 015752 205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKS 283 (401)
Q Consensus 205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~ 283 (401)
+=..-+++-|.|++|+||||||.++... ....-..++|+.....++.. .+.+++.+.....-... +.++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4345579999999999999999988762 33334567888777666543 34455433211100111 4455555
Q ss_pred HHHHHcC-CceEEEEEeCCCC
Q 015752 284 ILRDYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 284 ~l~~~L~-~kr~LlVlDdv~~ 303 (401)
.+....+ +..-+||+|.+-.
T Consensus 124 ~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHHhhccCCcEEEEcchhh
Confidence 5555553 4677999999853
No 192
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0043 Score=54.22 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC----------cCHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG----------EDYQ 279 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~----------~~~~ 279 (401)
.+++|+|..|.|||||.+.++.... .....+++.-....... ..+...++.-.....-+. +.-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 5899999999999999999986321 22333443210000000 011111110000000000 0122
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
...-.+...+..++-++++|+.-. |......+...+..- ..|..||++|.+.......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 233345566667888999999866 555555555444331 2367789999888766543
No 193
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0079 Score=55.52 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccC-----cc------ccc---CeEEEEEcCC------CCCH----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNH-----VK------FYF---DCHAWVRVSL------DYDF---------------- 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~------~~~~---------------- 253 (401)
..++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.-.. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999976211 10 001 1344442110 1111
Q ss_pred ------HHHHHHHHHHcCCCCCCccccCc-CHH-HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCc
Q 015752 254 ------RRILDDIIKSVIPPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGS 322 (401)
Q Consensus 254 ------~~~~~~i~~~l~~~~~~~~~~~~-~~~-~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs 322 (401)
.+...+.++..+........+.. +-. .-.-.|.+.|..++=|++||.--. |...-..+...+.. ...|+
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 24455556665554333233444 333 344556677889999999998655 43333333333332 12288
Q ss_pred EEEEecCChhHHhh
Q 015752 323 RVFITVTDPDLLAS 336 (401)
Q Consensus 323 ~iivTTR~~~v~~~ 336 (401)
.||++|.+-+....
T Consensus 191 tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 TVLMVTHDLGLVMA 204 (254)
T ss_pred EEEEEeCCcHHhHh
Confidence 89999998765544
No 194
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.85 E-value=0.0062 Score=53.22 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCCCCCCc-----cccCcCHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIPPSRVS-----VIIGEDYQLKK 282 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~ 282 (401)
.+++|+|..|+|||||.+.+..-.. .....+++.-.. ..........+ ..+.....-. +..=+.-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 4889999999999999999986321 122333321100 11111111100 0000000000 00001112223
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 335 (401)
-.+...+..++-+++||+... |......+...+... ..|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 334444555667889999876 555545554444321 23667888888877654
No 195
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.85 E-value=0.0046 Score=64.13 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=38.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 68999999999998888653233445679999999999999999873
No 196
>PRK09354 recA recombinase A; Provisional
Probab=96.85 E-value=0.0045 Score=60.00 Aligned_cols=99 Identities=16% Similarity=0.030 Sum_probs=61.2
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc
Q 015752 198 LFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE 276 (401)
Q Consensus 198 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 276 (401)
|-..|. .+=..-+++-|.|++|+||||||.+++. .....-..++|+.....++.. .+.+++.+....-....
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp 120 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC
Confidence 334444 3334457899999999999999998876 333344678899888777653 34555443211100111
Q ss_pred -CHHHHHHHHHHHcC-CceEEEEEeCCCC
Q 015752 277 -DYQLKKSILRDYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 277 -~~~~l~~~l~~~L~-~kr~LlVlDdv~~ 303 (401)
+.++....+...++ ++.-|||+|.|-.
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence 44555555555553 4677999999853
No 197
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.85 E-value=0.012 Score=53.19 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=33.2
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-+++||..-. |......+...+..- ..|..||++|.+.+....+
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4444556778899999866 555555555544431 2466788888887665443
No 198
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.84 E-value=0.004 Score=66.54 Aligned_cols=134 Identities=14% Similarity=0.024 Sum_probs=72.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
..++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++.... .-...+.++...-. ...+-..+.....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lfg~~~ 452 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLFGHER 452 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhcCccc
Confidence 67899999998887777542233446779999999999999999873211 11122333333221 1111112221111
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP 331 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~ 331 (401)
+. +..........+ -....=.|+||+|.. .......|...+..+. .+.|||.||...
T Consensus 453 ~~------~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 453 GA------FTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cc------ccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 10 111111111111 112335699999987 5666677776664321 245888887653
No 199
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.84 E-value=0.012 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 206 SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+..+++|.|+.|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998886
No 200
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.83 E-value=0.0068 Score=58.78 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=33.8
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777777765323345578999999999999999976
No 201
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.83 E-value=0.008 Score=57.89 Aligned_cols=105 Identities=12% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~- 271 (401)
.|-+.|..+=..-.++.|.|.+|+|||||+..++....... .-..++|+.....+.... +.++++.++......
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l 162 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVL 162 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhh
Confidence 34444544434567999999999999999998875322211 123679999888777765 344555554432110
Q ss_pred cc---cCc-CHHH---HHHHHHHHcC-CceEEEEEeCCC
Q 015752 272 VI---IGE-DYQL---KKSILRDYLT-NKKYFIVLDDVF 302 (401)
Q Consensus 272 ~~---~~~-~~~~---l~~~l~~~L~-~kr~LlVlDdv~ 302 (401)
.. ... +.++ +...+...+. .+--|||+|.+-
T Consensus 163 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 163 DNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred ccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 00 011 2333 3333333343 456699999984
No 202
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.83 E-value=0.017 Score=52.34 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=33.9
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+-.++-+++||..-+ |....+.+...+.. ...|..||++|.+.......
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence 334444555667899999866 55555555444432 12356788888888766554
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.018 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.++|+++|++|+||||++.+++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999876
No 204
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.80 E-value=0.0045 Score=59.53 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHH
Q 015752 205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKS 283 (401)
Q Consensus 205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~ 283 (401)
+=+.-+++-|.|++|+||||||.+++. .....-..++|+.....++.. .+.+++.+....--... +.++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 334457888999999999999999876 233334578899877766643 34444432111100111 4555556
Q ss_pred HHHHHcC-CceEEEEEeCCC
Q 015752 284 ILRDYLT-NKKYFIVLDDVF 302 (401)
Q Consensus 284 ~l~~~L~-~kr~LlVlDdv~ 302 (401)
.+...++ +.--|||+|.|-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 6655554 466799999975
No 205
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.01 Score=60.40 Aligned_cols=170 Identities=11% Similarity=0.044 Sum_probs=92.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.++||-+.....|...+..+. -..--...|+.|+||||+|+-++....-.+ | ....++..-...+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 778999888888888886531 223345679999999999988865211111 1 11112222222222222100
Q ss_pred CCCCCccccCc-CHHHHHHHHHHHc----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752 266 PPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE 338 (401)
Q Consensus 266 ~~~~~~~~~~~-~~~~l~~~l~~~L----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~ 338 (401)
.+.-+.+..+. ..++....+.+.. +++-=..|+|.|+- ....|..|...+-.....-..|..|.+. .+...+-
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 00000001111 3333333333322 34555889999976 7889999998887766666666655554 3433320
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
....+..+. .| +.++-...+...+.
T Consensus 168 -SRcq~f~fk------ri--~~~~I~~~L~~i~~ 192 (515)
T COG2812 168 -SRCQRFDFK------RL--DLEEIAKHLAAILD 192 (515)
T ss_pred -hcccccccc------CC--CHHHHHHHHHHHHH
Confidence 011222555 77 88877777777764
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.78 E-value=0.0035 Score=56.08 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPP 267 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 267 (401)
+++|+++|+.|+||||.+.+++.. .+..-..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 468999999999999987777763 332333455666432 334455566666666643
No 207
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.77 E-value=0.015 Score=52.76 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCCCCc-cccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEe
Q 015752 255 RILDDIIKSVIPPSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFIT 327 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~-~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivT 327 (401)
.....+++.++...... ....+ .-++-.-.+.+.|..++-+|+-|.--. |...=+.+...|... ..|..||+.
T Consensus 120 ~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~V 199 (226)
T COG1136 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMV 199 (226)
T ss_pred HHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34555666655542211 11222 334445566677778888888888533 333334444444432 347889999
Q ss_pred cCChhHHhhc
Q 015752 328 VTDPDLLASL 337 (401)
Q Consensus 328 TR~~~v~~~~ 337 (401)
|.++.++..+
T Consensus 200 THd~~lA~~~ 209 (226)
T COG1136 200 THDPELAKYA 209 (226)
T ss_pred cCCHHHHHhC
Confidence 9999999876
No 208
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.76 E-value=0.0051 Score=56.55 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------ 271 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------ 271 (401)
|-+.|..+=..-.++.|.|.+|+|||+|+.++.... .+ .=..++|++...++ ..+++.+ .+++......
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l 88 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYL 88 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCc
Confidence 334443443456789999999999999999986421 22 23578888886543 4444443 3333211100
Q ss_pred ---------cccCc-CHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 015752 272 ---------VIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVF 302 (401)
Q Consensus 272 ---------~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~ 302 (401)
..... +.+.+...+.+.+.. +.-++|+|.+-
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00111 446677777777654 56689999975
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.76 E-value=0.0012 Score=57.55 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=32.2
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++|.+..+.++.+.+..-.....-|.|+|..|.||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888887765222234566999999999999999988
No 210
>PRK07667 uridine kinase; Provisional
Probab=96.75 E-value=0.0021 Score=57.32 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567777766555668999999999999999999987
No 211
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.013 Score=52.83 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-++++|.--. |......+...+... ..|..||++|.+.......
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 4455556677899999866 555545554444321 2366789999988765543
No 212
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.014 Score=54.28 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccC--eEEEEEcC----CCCCHHHHH--------------HHHHHHcCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFD--CHAWVRVS----LDYDFRRIL--------------DDIIKSVIP 266 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~~~--------------~~i~~~l~~ 266 (401)
.+++|+|..|+|||||++.+....... . .++ .+.++.-. ...++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 589999999999999999997642211 1 111 12222110 011222222 223333332
Q ss_pred CCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 267 PSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 267 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.......... .-+...-.+...|..++-+++||.--. |...-..+...+..- ..+..||++|.+...+...
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 2110011222 222333345556667888999999866 555445454444331 2366788899887766543
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.72 E-value=0.0083 Score=62.04 Aligned_cols=44 Identities=27% Similarity=0.147 Sum_probs=36.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 67999999999998877543 234567899999999999999976
No 214
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.72 E-value=0.0016 Score=66.47 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 185 RLDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
|.+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 37899999999999999943 244567999999999999999999986
No 215
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.035 Score=52.03 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=99.5
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
+++-|.+...+.|.+...- .....+-|.++|++|.||+.||+.|+-. ... -|+++|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH-----
Confidence 6778888888888776542 1234678999999999999999999872 222 23445443
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-CceEEEEEeCCCC-C-------chhHHHHHhh-------CCCCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-D-------SEIWIDVEEL-------LPDDE 319 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~-~-------~~~~~~l~~~-------l~~~~ 319 (401)
+++....+ ..+.+...|.+.-+ .|+.+|.+|.+.. . .+.-..|..- ..++.
T Consensus 201 ---DLvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 201 ---DLVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ---HHHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 23333333 34566666666664 6899999999854 1 1222223222 12233
Q ss_pred CCcEEEEecCChhHHhhc-h--hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHH
Q 015752 320 NGSRVFITVTDPDLLASL-E--MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKF 392 (401)
Q Consensus 320 ~gs~iivTTR~~~v~~~~-~--~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i 392 (401)
.|.-|+=.|..+-+.... + .....+|+|. ....-..+|.-++|+.+. ....+.++.+|++-
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLP----------e~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLP----------EAHARARMFKLHLGDTPH--VLTEQDFKELARKT 331 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCC----------cHHHhhhhheeccCCCcc--ccchhhHHHHHhhc
Confidence 455556677776554333 1 1112222333 445555677777776543 23356677777764
No 216
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.72 E-value=0.04 Score=51.78 Aligned_cols=134 Identities=15% Similarity=0.057 Sum_probs=71.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-- 271 (401)
..+.++..|... ....-++|+|+.|+|||||.+.+.. .+. .....+++.- ......+-..++......-....
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 455566666542 3456889999999999999999987 332 2233333321 00000011122322221111000
Q ss_pred cccCc-CHHHHHHHHHHHc-CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 272 VIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 272 ~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
...+- +...-...+...+ .-.+-++++|.+-. .+.+..+...+. .|..+|+||.+..+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00010 1111111222222 25788999999977 766777766653 47789999998777544
No 217
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.006 Score=53.57 Aligned_cols=120 Identities=17% Similarity=0.094 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cCCCC-CHHHHHHHHHHHcCC--CCCCc-c------cc--
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VSLDY-DFRRILDDIIKSVIP--PSRVS-V------II-- 274 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~~~~~i~~~l~~--~~~~~-~------~~-- 274 (401)
.+++|+|..|+|||||++.+..-.. .....+.+. ++... .... ....+.. +.... . ..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHheee
Confidence 5899999999999999999986221 123333331 11100 0111 1111110 00000 0 00
Q ss_pred -CcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChhHHhh
Q 015752 275 -GEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-EN-GSRVFITVTDPDLLAS 336 (401)
Q Consensus 275 -~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~~~ 336 (401)
-+.-+...-.+...+..++=++++|+--. |......+...+... .. |..||++|.+......
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 00112333344555666778899999866 555555555544432 22 5678888888766554
No 218
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0013 Score=56.02 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccc-cCe
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY-FDC 241 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~ 241 (401)
..-|+|.||+|+||||+++++.+ .++.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 35688999999999999999987 44433 553
No 219
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.70 E-value=0.0058 Score=57.17 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHh
Q 015752 44 EIIVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAID 117 (401)
Q Consensus 44 ~~~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD 117 (401)
.|.|.+++++|..+... ..+.-++.+++-++.+| +||+.+.+...+.++ ..+.+..++...||++|.++|
T Consensus 295 LGyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~----~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 295 LGYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHD----TNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred ccHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhh----hhhhHHHHHHHHHhheeeeee
Confidence 47899999999999888 77888999999999999 999998555323454 489999999999999999999
Q ss_pred hhhhhhhhccCccchhcccchhhhHHHHHHHHHHHHHHhhc
Q 015752 118 TYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQ 158 (401)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~ 158 (401)
-+...... .|....+...+...|+.+++++++
T Consensus 371 aCi~k~~P---------~Wcl~~WL~dIieei~~ik~~i~e 402 (402)
T PF12061_consen 371 ACISKSVP---------HWCLERWLLDIIEEITCIKAKIQE 402 (402)
T ss_pred hhhcCCCc---------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98654332 234445667888888888887753
No 220
>PRK13695 putative NTPase; Provisional
Probab=96.69 E-value=0.0017 Score=56.88 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 221
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.69 E-value=0.013 Score=54.55 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC---eEEEEEcCCCC------CHH-----------HHHHHHHHHcCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD---CHAWVRVSLDY------DFR-----------RILDDIIKSVIP 266 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~vs~~~------~~~-----------~~~~~i~~~l~~ 266 (401)
.+++|+|..|+|||||++.++.-.... +. ++ .+.++.-.... ++. .-...+++.++.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 589999999999999999998632111 10 11 12222111000 111 112333444433
Q ss_pred CCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 267 PSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 267 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.......... .-+...-.+...+..++-+++||+.-. |...-..+...+..- ..|..||++|.+.+....
T Consensus 111 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~ 186 (251)
T PRK09544 111 GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMA 186 (251)
T ss_pred hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 2110011122 122223334445556777999999866 554445544444321 125668888888776544
No 222
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.68 E-value=0.013 Score=53.36 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-++++|+--. |......+...+... ..|..||++|.+.+....
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 355556667788999999866 555555555544432 236678888888775443
No 223
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.68 E-value=0.02 Score=51.65 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++-+++||.--+ |......+...+..- ..|..||++|.+.......
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34444555667999999866 555555555444321 2366788888887765543
No 224
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.012 Score=55.25 Aligned_cols=97 Identities=14% Similarity=-0.038 Sum_probs=61.8
Q ss_pred cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHH
Q 015752 204 EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKK 282 (401)
Q Consensus 204 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~ 282 (401)
.+=+.-+++=|+|+.|+||||+|.+++- .....-..++|+.....+++..+.+-....+..-.- .+.... ....++
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e~q~~i~ 131 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLV-SQPDTGEQQLEIA 131 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeE-ecCCCHHHHHHHH
Confidence 3334567899999999999999999876 334444489999999999987764333331111100 001111 444455
Q ss_pred HHHHHHcCCceEEEEEeCCCC
Q 015752 283 SILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~ 303 (401)
..+.+....+--|+|+|.+-.
T Consensus 132 ~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHhccCCCCEEEEecCcc
Confidence 555555555567999999854
No 225
>PTZ00035 Rad51 protein; Provisional
Probab=96.68 E-value=0.015 Score=56.60 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~- 271 (401)
.|-+.|..+=..-.++.|+|.+|+|||||+..++-..... ..-..++|+.....++...+ .++++.++......
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVL 184 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHh
Confidence 3444454443456789999999999999999887532221 11235679988777777663 44555554432110
Q ss_pred cc---cCc-CHHHHHHHH---HHHc-CCceEEEEEeCCCC
Q 015752 272 VI---IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVFD 303 (401)
Q Consensus 272 ~~---~~~-~~~~l~~~l---~~~L-~~kr~LlVlDdv~~ 303 (401)
.+ ... +.+++...+ ...+ .++--|||+|.+..
T Consensus 185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 00 011 333333333 3333 34556999999853
No 226
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.67 E-value=0.013 Score=56.43 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=61.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-- 271 (401)
+-+.|..+=..-.++-|+|.+|+|||+++.+++....... .=..++||.....++...+. +++..++......
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~ 162 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLK 162 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhh
Confidence 3344433333457889999999999999999876432211 11379999998888877654 4455554331100
Q ss_pred -----cccCc-CHHHHHHHHHHHcCC---ceEEEEEeCCCC
Q 015752 272 -----VIIGE-DYQLKKSILRDYLTN---KKYFIVLDDVFD 303 (401)
Q Consensus 272 -----~~~~~-~~~~l~~~l~~~L~~---kr~LlVlDdv~~ 303 (401)
..... ....+.+.+.+.+.. +.-+||+|.+-.
T Consensus 163 ~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 163 NIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 00111 112234445555543 245999999854
No 227
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.66 E-value=0.012 Score=60.26 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=42.8
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR 246 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 246 (401)
.+++--.+-++++..||.. +....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 4455556678889999975 2334579999999999999999999872 2466777865
No 228
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.013 Score=55.13 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=33.3
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++-++++|+.-. |......+...+..- ..|..||++|.+.+.....
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 34444555677999999876 555555555544321 2356688888887654443
No 229
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.092 Score=50.57 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=47.2
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++=++|||++.. +...-..|...+-+...++.+|++|.+. .+...+. .....+.+. ++ +.+++.+.+.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~------~~--~~~~~~~~L~ 182 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFK------LP--PAHEALAWLL 182 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCC------Cc--CHHHHHHHHH
Confidence 5667899999977 6666677877777666677777776654 4444431 112233777 88 8888887776
Q ss_pred Hh
Q 015752 369 LH 370 (401)
Q Consensus 369 ~~ 370 (401)
+.
T Consensus 183 ~~ 184 (319)
T PRK08769 183 AQ 184 (319)
T ss_pred Hc
Confidence 54
No 230
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.024 Score=56.91 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|.+|+||||++.+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999998876
No 231
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.63 E-value=0.018 Score=50.51 Aligned_cols=124 Identities=15% Similarity=0.257 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cC------------------CC------------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VS------------------LD------------------ 250 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs------------------~~------------------ 250 (401)
..+.|+|++|.|||||.+.+|...+.. ...+|+. ++ |+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 478899999999999999999754322 1223321 00 00
Q ss_pred ------CCHHHHHHHHHHHcCCCCCCccccC--cCHHHHHHHHHHHcCCceEEEEEeCCCC--C-chhHHHHHhhCC-CC
Q 015752 251 ------YDFRRILDDIIKSVIPPSRVSVIIG--EDYQLKKSILRDYLTNKKYFIVLDDVFD--D-SEIWIDVEELLP-DD 318 (401)
Q Consensus 251 ------~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~-~~~~~~l~~~l~-~~ 318 (401)
....+-..+.++..+.......-.. +.-++-.-.|.+.+-+++-+|+-|.--- | .-.|+-+ ..|. -+
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeein 184 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEIN 184 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHh
Confidence 0122233334444443322110111 1333444455666667888888886533 3 3445444 3333 35
Q ss_pred CCCcEEEEecCChhHHhhc
Q 015752 319 ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 319 ~~gs~iivTTR~~~v~~~~ 337 (401)
..|+.||++|.+.++...+
T Consensus 185 r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 185 RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hcCcEEEEEeccHHHHHhc
Confidence 6799999999999998877
No 232
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0018 Score=60.02 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=39.2
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|-++.++++.-.+.. .+..+.-+.++|++|.||||||.-+++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 8899998888888766654 345677899999999999999999998
No 233
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.016 Score=53.13 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+..++-+++||..-. |...-..+...+..- ..|..||++|.+.+.....
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 207 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI 207 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 334444556667999999866 555445555554432 2367788888888765443
No 234
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.62 E-value=0.019 Score=52.33 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+-..+-++++|+.-. |....+.+...+..- ..|..||++|.+.......
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 34445556778899999866 555555555444321 2366799999988766543
No 235
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.014 Score=60.74 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=63.0
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 261 (401)
.+-+|.++..++|++.|.- +.-+-.+++++|+||+|||.|++.++. .....| +-++++.--|..++=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR---- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR---- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc----
Confidence 5678999999999999853 233447999999999999999999998 565555 233444433333221
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
..... =+.+-...+.+.+++. +.+.-|++||.+..
T Consensus 394 -GHRRT-----YIGamPGrIiQ~mkka-~~~NPv~LLDEIDK 428 (782)
T COG0466 394 -GHRRT-----YIGAMPGKIIQGMKKA-GVKNPVFLLDEIDK 428 (782)
T ss_pred -ccccc-----ccccCChHHHHHHHHh-CCcCCeEEeechhh
Confidence 00000 0111122333333332 45778899999865
No 236
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.61 E-value=0.022 Score=51.74 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|..-. |....+.+...+..-..+..||++|.+......+
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 34445556778999999866 5555555554444322246688888888766543
No 237
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0063 Score=54.93 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-++++|+--. |...-..+...+.....+..||++|.+......
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 344455566778999999766 544444444444332223568888888776544
No 238
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.60 E-value=0.0095 Score=53.12 Aligned_cols=81 Identities=15% Similarity=0.022 Sum_probs=42.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCccc-ccC---eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKF-YFD---CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL 285 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l 285 (401)
||+|.|.+|+||||+|+.+.. .+.. .+. ....++...-+....... .-.. ............ +.+.+...|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~-~~~~~~~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGR-GENRYNFDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHH-CTTTSSTTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhh-Hhhc-cccccCCCCccccCHHHHHHHH
Confidence 699999999999999999987 3332 122 133333322222222111 1111 111100012334 777888888
Q ss_pred HHHcCCceEE
Q 015752 286 RDYLTNKKYF 295 (401)
Q Consensus 286 ~~~L~~kr~L 295 (401)
....+++..-
T Consensus 77 ~~L~~g~~i~ 86 (194)
T PF00485_consen 77 KALKNGGSIE 86 (194)
T ss_dssp HHHHTTSCEE
T ss_pred HHHhCCCccc
Confidence 7776666543
No 239
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.01 Score=54.94 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-----CCCHHHHHHHHHHHcCCCCCCccc-cCc-C-HHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-----DYDFRRILDDIIKSVIPPSRVSVI-IGE-D-YQL 280 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~~~-~~~-~-~~~ 280 (401)
-.+++|+|..|+|||||++.+.. -. ..-.+.+++.-.+ .....+-..+++...+........ ... + -+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LE-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--Cc-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999986 22 2223333333111 222344566777776644221111 111 2 222
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~ 337 (401)
-.-.+.+.|.-++-|+|.|..-+ |...-.++...+.+ ...|...+..|.+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 33445667788999999999765 43322344333332 23466678888888888777
No 240
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.59 E-value=0.024 Score=52.12 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 335 (401)
.+...+..++-+++||+.-. |....+.+...+..- ..|..||++|.+.+...
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 34555566778899999866 555555555554432 23667888888877654
No 241
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.59 E-value=0.021 Score=50.17 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+..+|+|.|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 242
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.008 Score=54.24 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhchhCCCcce
Q 015752 279 QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASLEMENGEKI 345 (401)
Q Consensus 279 ~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~ 345 (401)
+.-...+.+.+--++-|.|||...+ |.++.+.+...+.. ...|+-+||.|..+.++..+ .++.+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i---~pD~v 215 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI---KPDKV 215 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc---CCCEE
Confidence 3344455555556778999999988 65555555433322 23467788888999999888 55554
No 243
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.58 E-value=0.018 Score=55.92 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=62.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V 272 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 272 (401)
|-+.|..+=..-.++-|.|.+|+|||+|+..++-...... .-..++|+.....+.+..+ .+|++.++...... +
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~ 190 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLE 190 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhcc
Confidence 4444444434567888999999999999988874322211 1137999999999888765 45666665442211 0
Q ss_pred c---cCc-CHHHHHHHH---HHHc-CCceEEEEEeCCC
Q 015752 273 I---IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVF 302 (401)
Q Consensus 273 ~---~~~-~~~~l~~~l---~~~L-~~kr~LlVlDdv~ 302 (401)
. ... +.+.+...+ ...+ ..+--|||+|.+-
T Consensus 191 ~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 191 NVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 1 111 333333333 2333 3466699999984
No 244
>PRK06762 hypothetical protein; Provisional
Probab=96.58 E-value=0.0087 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999999999987
No 245
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0075 Score=51.69 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
.+++|+|..|.|||||.+.+..- .. .....+++.-... ..... ....+.... ..+ .-+...-.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~----qlS-~G~~~r~~l~~ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLPLEE----LRRRIGYVP----QLS-GGQRQRVALAR 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCCHHH----HHhceEEEe----eCC-HHHHHHHHHHH
Confidence 58899999999999999999873 22 2344454432111 11111 111111100 011 22233333555
Q ss_pred HcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 288 YLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+-++++|..-. |......+...+... ..+..+|++|.+.......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5556678899999876 555555555444321 2256788888887766553
No 246
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.57 E-value=0.011 Score=52.86 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.-.+...+...+-++++|+.-. |......+...+..- ..+..||++|.+......
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 3345555666778999999866 555555554444321 236678888888876653
No 247
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.021 Score=51.54 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+++||.--. |......+...+..- ..|..||++|.+......
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 334455566778999999866 555555555555432 236678888888765444
No 248
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.008 Score=54.23 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=34.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||+--. |....+.+...+..- ..|..||++|.+.......
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 195 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence 34444456678899999866 666666666555432 2366788888887765543
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.56 E-value=0.025 Score=53.30 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV 247 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 247 (401)
.+.+++.++|++|+||||++.+++. .....-..+.++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeC
Confidence 3568999999999999999988876 33332234555543
No 250
>PRK00625 shikimate kinase; Provisional
Probab=96.56 E-value=0.016 Score=50.82 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.021 Score=55.29 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCccc-ccCeEEEEEcCCCCC--HHHHHHHHHHHcCC
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFDCHAWVRVSLDYD--FRRILDDIIKSVIP 266 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~ 266 (401)
+..+|.++|++|+||||++.+++. .... .+ .++.+. ...+. ...-+......++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 468999999999999998887776 2322 23 233333 22222 23345556666654
No 252
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.095 Score=50.43 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=92.1
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++-|-++.+++|.+.+.-. =..++=|.++|++|.|||-||+.+++ +....| +.+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 67778899998888876431 13456678999999999999999999 555444 333221
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCC-ceEEEEEeCCCC------C------c---hhHHHHHhhCCC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD------D------S---EIWIDVEELLPD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~------~------~---~~~~~l~~~l~~- 317 (401)
++....-+ +...+...+.+.-+. .+..|.+|.+.. | . ...-+|...+..
T Consensus 220 ----ElVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 ----ELVQKYIG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ----HHHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 22222222 233455555555544 688999999853 0 1 112234333332
Q ss_pred -CCCCcEEEEecCChhHHhhchhCCCcce--ecccccCCCCCCCChHHHHHHHHHhhCCCCC
Q 015752 318 -DENGSRVFITVTDPDLLASLEMENGEKI--RLDSVLFGGPLIRLKHEAWQFFILHYGSMPL 376 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~~~~~~~~~~~--~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~ 376 (401)
....-|||..|...++..-.-. .+..+ .++ | || .+.+.-.++|.-++.....
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALL-RPGR~DRkIE---f--pl-Pd~~gR~~Il~IHtrkM~l 340 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALL-RPGRFDRKIE---F--PL-PDEEGRAEILKIHTRKMNL 340 (406)
T ss_pred CCCCCeEEEEecCCccccChhhc-CCCcccceee---c--CC-CCHHHHHHHHHHHhhhccC
Confidence 2346789998887765432200 22333 233 2 34 1556666777777755443
No 253
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.55 E-value=0.036 Score=50.15 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||.--. |......+...+..- ..|..||++|.+.+.....
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 344555566778999999866 555445544444321 2356788888887765543
No 254
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.55 E-value=0.017 Score=52.04 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||+--. |......+...+... ..|..||++|.+.......
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 34445556677999999866 555555555544432 2466788899888766543
No 255
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.55 E-value=0.016 Score=51.44 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD 332 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~ 332 (401)
.+...|...+-+++||+--. |....+.+...+..- ..|..||++|.+.+
T Consensus 137 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 34444556677999999866 555555555444331 23667888887643
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.0099 Score=56.38 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
...+++|+|++|+||||++.+++.....++.-..+..++... .....+.+......++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence 357999999999999999988876322221112344555432 11223333344444333211 0114444544444
Q ss_pred HHcCCceEEEEEeC
Q 015752 287 DYLTNKKYFIVLDD 300 (401)
Q Consensus 287 ~~L~~kr~LlVlDd 300 (401)
.. .+ .=+|++|.
T Consensus 269 ~~-~~-~d~vliDt 280 (282)
T TIGR03499 269 RL-RD-KDLILIDT 280 (282)
T ss_pred Hc-cC-CCEEEEeC
Confidence 33 33 35777775
No 257
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.55 E-value=0.031 Score=53.88 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=31.9
Q ss_pred ccHHHHHHHHhcCC-CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 193 RGREELFDLLIEGS-SGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 193 ~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-.+.|.+.|...+ ....+|+|.|.=|+|||++.+.+.+.
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566777776543 67889999999999999999999873
No 258
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.55 E-value=0.077 Score=55.13 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=84.2
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccC---cc---cccCeEEEEEcCCCCCHHHH
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNH---VK---FYFDCHAWVRVSLDYDFRRI 256 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~---~~F~~~~wv~vs~~~~~~~~ 256 (401)
..+-+|+.+..+|-..+.. +......+=|.|-+|.|||..+..|.+..+ -+ ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999999888754 223334778999999999999999987422 11 2233 234444444568899
Q ss_pred HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-----CceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEE
Q 015752 257 LDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-----NKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFI 326 (401)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iiv 326 (401)
+..|...+.+... ........|..++. .+.++|++|++.. -...-+-+...|.+. .++|+++|
T Consensus 475 Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 475 YEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 9999999988743 34444555555553 3578888888744 111113444555553 45677654
No 259
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.029 Score=52.36 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++-+++||.--. |...-..+...+..- ..|..||++|.+......+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~ 195 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM 195 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444556778999999866 555545555444331 2366788888887765544
No 260
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.54 E-value=0.029 Score=56.16 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.++.++|.+|+||||.+.+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999877765
No 261
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.53 E-value=0.017 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++.+.|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998876
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.53 E-value=0.0022 Score=57.42 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII 274 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 274 (401)
..+.+..+... +-+++.|.|.+|.||||+++.+.. .+... ...+.+...... ....+.+..+....
T Consensus 6 Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~~----Aa~~L~~~~~~~a~----- 71 (196)
T PF13604_consen 6 QREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTNK----AAKELREKTGIEAQ----- 71 (196)
T ss_dssp HHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSHH----HHHHHHHHHTS-EE-----
T ss_pred HHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcHH----HHHHHHHhhCcchh-----
Confidence 34444545432 336788899999999999988876 33322 122333222221 12223333222100
Q ss_pred CcCHHHHHHHHHHHc------CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 015752 275 GEDYQLKKSILRDYL------TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFIT 327 (401)
Q Consensus 275 ~~~~~~l~~~l~~~L------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivT 327 (401)
+...........- ..++-+||+|+..- +...+..|....+. .|+++|+.
T Consensus 72 --Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 72 --TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp --EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred --hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 1111100000000 12345999999977 66778888887765 46676653
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.53 E-value=0.022 Score=51.09 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 335 (401)
-.+...|..++-+++||+--. |....+.+...+... ..|..||++|.+.....
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 345555667788999999866 655555555544431 23677888888877654
No 264
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.53 E-value=0.0032 Score=56.70 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc---CHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSIL 285 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~l 285 (401)
..++.|.|+.|.||||+.+.+....-.. ....++.... .. -.++..|+..+............ ...++. .+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH-HH
Confidence 4789999999999999998886421110 0111111111 01 12233344444333211111111 122221 12
Q ss_pred HHHcCCceEEEEEeCCCC--CchhH----HHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 286 RDYLTNKKYFIVLDDVFD--DSEIW----IDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 286 ~~~L~~kr~LlVlDdv~~--~~~~~----~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.. +..++-|+++|.... ++.+- ..+...+.. .|+.+|+||.+.+++...
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 12 235788999999855 23321 223333332 378899999999988776
No 265
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.52 E-value=0.032 Score=50.08 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||.--. |....+.+...+..- ..|..||++|.+......+
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34445556778999999866 555555555544332 2366788888887765543
No 266
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.52 E-value=0.0062 Score=62.72 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=73.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
..++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++... ..-...+.++.+.-.+ ..+-..++....
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lfG~~~ 263 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELFGHVK 263 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhcCccc
Confidence 5789999999999888865333445678999999999999999987321 1111234444433221 111112221111
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP 331 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~ 331 (401)
+. +..........+ + ....=-|+||++.. .......|...+..+. .+.|||.||...
T Consensus 264 g~------~~ga~~~~~g~~-~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 264 GA------FTGAISNRSGKF-E--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cc------cCCCcccCCcch-h--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 10 000000000011 1 11223468999977 5666677777765432 245888877653
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.50 E-value=0.026 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.-.+...+..++-++++|+.-. |...-+.+...+.. ...|..||++|.+......+
T Consensus 135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 3344455556778999999866 54444445444443 12467799999887665544
No 268
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.022 Score=50.13 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...+-.++-++++|+--. |......+...+..- ..|..||++|.+......
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 34555566778999999866 555555555544431 236678889888755444
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.032 Score=57.93 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
..-|.|.|+.|+|||+||+.+++... +.+.-.+..++.+.- -..+.++.. +...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~---------------------l~~vfs 488 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF---------------------LNNVFS 488 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH---------------------HHHHHH
Confidence 45678999999999999999998333 333333444443321 112222211 222233
Q ss_pred HHcCCceEEEEEeCCCC
Q 015752 287 DYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~ 303 (401)
+.+.-.+-+|||||+..
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 34456789999999953
No 270
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.027 Score=51.19 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=33.0
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-+++||.--. |...-..+...+..- ..|..||++|.+......
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 334455556778999999866 555545555544321 235678888888764433
No 271
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.47 E-value=0.014 Score=50.21 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE---EEcCCCCCHHHHHHHHH--HHcCCCCCCc---cccCc---CH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW---VRVSLDYDFRRILDDII--KSVIPPSRVS---VIIGE---DY 278 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~~i~--~~l~~~~~~~---~~~~~---~~ 278 (401)
..|-|++..|.||||+|..+.- +...+=..+.+ +.-........++..+- .......... .+... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 3567778889999999977764 22222122233 33332334444444330 0000000000 00000 11
Q ss_pred HHHHHHHHHHcC-CceEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752 279 QLKKSILRDYLT-NKKYFIVLDDVFD----DSEIWIDVEELLPDDENGSRVFITVTDPD 332 (401)
Q Consensus 279 ~~l~~~l~~~L~-~kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 332 (401)
.......++.+. ++-=|||||.+-. ..-..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 222333444444 3556999999854 12233566666665566788999999864
No 272
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.039 Score=54.56 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcc--cccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVK--FYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSI 284 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 284 (401)
...+|.++|+.|+||||.+.+++...... .+-..+..+++.. .....+-++...+.++.+-. ...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 45799999999999999998887632221 1112344444432 11222234455554444311 01133444444
Q ss_pred HHHHcCCceEEEEEeCCCC
Q 015752 285 LRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~ 303 (401)
+.+. .+.-+|++|..-.
T Consensus 249 L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHh--CCCCEEEEcCCCC
Confidence 4332 3345667777643
No 273
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.03 Score=54.14 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=42.4
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++=++|+|++.. |...-..+...+.....++.+|++|.+.+ +...+. .....+.+. ++ +.+++.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~------~~--~~~~~~~~L~ 182 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLP------AP--SHEEALAYLR 182 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCC------CC--CHHHHHHHHH
Confidence 3444556688866 66666666666655444566777777654 443331 011223777 88 8888887776
Q ss_pred Hh
Q 015752 369 LH 370 (401)
Q Consensus 369 ~~ 370 (401)
+.
T Consensus 183 ~~ 184 (325)
T PRK08699 183 ER 184 (325)
T ss_pred hc
Confidence 53
No 274
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.46 E-value=0.05 Score=53.76 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.3
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhccc
Q 015752 191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNN 233 (401)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~ 233 (401)
|.+..++|..||.+.. -..|.|.|+.|+||+.|+ .++.++.
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r 42 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDR 42 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCC
Confidence 5677899999998743 458899999999999999 7776643
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.45 E-value=0.023 Score=50.99 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+...+-++++|.--. |......+...+..- ..|..||++|.+......+
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence 334455556778899999866 555555555544431 2355788888877666555
No 276
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.44 E-value=0.039 Score=50.38 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||+--. |...-..+...+.. ...|..||++|.+...+...
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~ 208 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL 208 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 45566667788999999866 44332333333322 12356789999988765543
No 277
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.44 E-value=0.056 Score=49.16 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=34.1
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+-.++-++++|+.-. |......+...+..- ..|..||++|.+......+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~ 215 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV 215 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444455667999999866 555555555544431 2366788888887766543
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.44 E-value=0.026 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-.+++|+|+.|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998763
No 279
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.43 E-value=0.02 Score=56.42 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG 275 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 275 (401)
..+-+.|..+-..-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ ..-+..++.......-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence 3444545433333468999999999999999998863 3223346778776543 2332 222345543322110111
Q ss_pred c-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 276 E-DYQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 276 ~-~~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
. +.+.+...+. ..+.-+||+|.+.
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 2 4444444443 2466789999984
No 280
>PRK14527 adenylate kinase; Provisional
Probab=96.43 E-value=0.0076 Score=53.58 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 281
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.033 Score=50.58 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|.--. |...-..+...+..- ..|..||++|.+.......
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 198 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQL 198 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34445556777999999866 544444444444321 2256788888887765543
No 282
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.42 E-value=0.037 Score=58.63 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=80.8
Q ss_pred CccccccccHHHHHHHH---hcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLL---IEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.++.|.+...+++.+.+ ... ..-.+-|.++|++|.|||++|+.+.+ .....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------
Confidence 66778766665554443 211 11123488999999999999999987 333333 2222111
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chhH----HHHHhhCCC--C
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEIW----IDVEELLPD--D 318 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~~----~~l~~~l~~--~ 318 (401)
+. ...... ....+...+.......+++|+||+++. - ...+ ..+...+.. .
T Consensus 221 ~~----~~~~g~---------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 FV----EMFVGV---------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred hH----Hhhhcc---------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 11 111111 222333333333345788999999855 0 0112 223222221 1
Q ss_pred CCCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752 319 ENGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (401)
Q Consensus 319 ~~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~ 374 (401)
..+.-+|.||..++.....-. +..+.. .+. .. +.++-.+++..+....
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~------~P--d~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG------LP--DVRGREQILKVHMRRV 338 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcC------CC--CHHHHHHHHHHHhhcC
Confidence 234455557777654332201 112333 666 55 7778888888777543
No 283
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.41 E-value=0.0067 Score=58.86 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+..++|+|++|+|||.+|+.+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999998
No 284
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.41 E-value=0.0058 Score=58.54 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=34.1
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|-.++-+|+||.--. |+..-..+...+.. ...|..||+||.+.+.+...
T Consensus 133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL 190 (302)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 344555567788999999866 54443444333322 12367799999988765543
No 285
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.025 Score=51.55 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~ 337 (401)
.+.+.|.-++=+||+|..-+ |...-..+...|.. ...+-.+|+.|.+-.+...+
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 34556667788999999865 43322333333332 13356688889998888777
No 286
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.009 Score=56.47 Aligned_cols=81 Identities=9% Similarity=0.144 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcc--cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVK--FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
.++|.++|+||.|||+|.+.+++...++ +.|....-+.++. ..++.... ...+. -...+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWF----sESgK------lV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWF----SESGK------LVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHH----hhhhh------HHHHHHHHHH
Confidence 4789999999999999999999865443 3444434443322 23333332 22111 4566677777
Q ss_pred HHcCCce--EEEEEeCCCC
Q 015752 287 DYLTNKK--YFIVLDDVFD 303 (401)
Q Consensus 287 ~~L~~kr--~LlVlDdv~~ 303 (401)
+.+.++. +++.+|.|.+
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 7776654 4456898854
No 287
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.40 E-value=0.029 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 288
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.40 E-value=0.025 Score=51.01 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-+++||.--. |...-..+...+..- ..|..||++|.+......
T Consensus 140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 34455556677999999866 554444444444321 235678888888765544
No 289
>PRK04132 replication factor C small subunit; Provisional
Probab=96.40 E-value=0.069 Score=57.71 Aligned_cols=147 Identities=9% Similarity=0.036 Sum_probs=86.5
Q ss_pred CCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEE
Q 015752 217 SGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYF 295 (401)
Q Consensus 217 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~L 295 (401)
|.++||||+|..++++.- .+.++ .++-++.|...... .+++++..+....+ .-..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~------------------~~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKP------------------IGGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC------------------cCCCCCEE
Confidence 678999999999998321 12222 45666777654444 33444433221100 00124579
Q ss_pred EEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 296 IVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 296 lVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|||++.. +..+...|...+-.....+++|++|.+. .+..... +.-.+ ++. ++ +.++-...+...+.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr--SRC~~i~F~------~l--s~~~i~~~L~~I~~ 703 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFR------PL--RDEDIAKRLRYIAE 703 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh--hhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence 99999988 6677888888776645566776665554 3333331 22223 888 99 99888888887763
Q ss_pred CCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 373 SMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 373 ~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
. ++...+ .+....|+ .|.|.+
T Consensus 704 ~---Egi~i~---~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 704 N---EGLELT---EEGLQAILYIAEGDM 725 (846)
T ss_pred h---cCCCCC---HHHHHHHHHHcCCCH
Confidence 2 111111 33456677 777764
No 290
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.40 E-value=0.024 Score=52.91 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=32.8
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+...+-++++|..-. |......+...+... ..+..||++|.+......+
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ 205 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYL 205 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 3444445567999999866 555444444444321 2356788999988776643
No 291
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.40 E-value=0.02 Score=51.92 Aligned_cols=52 Identities=29% Similarity=0.412 Sum_probs=33.3
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChhHHh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-E-NGSRVFITVTDPDLLA 335 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~iivTTR~~~v~~ 335 (401)
.+...|..++-+++||.--. |...-..+...+..- . .|..||++|.+.+...
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 34455566778999999866 555555555544432 2 3667888888877654
No 292
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.031 Score=51.34 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-E-NGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||..-. |...-..+...+..- . .|..||++|.+.+.+...
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~ 203 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI 203 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 334445556677999999866 555555555554432 1 366788888887765543
No 293
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.39 E-value=0.037 Score=52.95 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+-.++-+++||.--. |+...+.+...+..-..+..||+||.+.+.+..
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence 334555567788999999866 554444444333322225679999998875444
No 294
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.39 E-value=0.024 Score=51.75 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-+++||+--. |......+...+..- ..|..||++|.+......
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~ 203 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence 344555566778899999866 565556665555432 236678888888776643
No 295
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.38 E-value=0.03 Score=52.32 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCc-cc--ccC---------eEEEEEcCCC----CCHH------------HHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHV-KF--YFD---------CHAWVRVSLD----YDFR------------RILDDII 261 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------~~~wv~vs~~----~~~~------------~~~~~i~ 261 (401)
.+++|+|..|+|||||.+.+..-... .+ .|+ .+.|+.-... .++. .-...++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 58999999999999999999753211 11 011 1223321110 1111 1223444
Q ss_pred HHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752 262 KSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 335 (401)
+.++........... .-+...-.+...|...+-+++||.--. |......+...+..- ..|..||++|.+.....
T Consensus 119 ~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~ 198 (257)
T PRK11247 119 AAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAV 198 (257)
T ss_pred HHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 444442111111122 122222334444555677889999866 555555554444321 23567888888877654
Q ss_pred h
Q 015752 336 S 336 (401)
Q Consensus 336 ~ 336 (401)
.
T Consensus 199 ~ 199 (257)
T PRK11247 199 A 199 (257)
T ss_pred H
Confidence 4
No 296
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.035 Score=49.45 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999763
No 297
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.012 Score=54.02 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||..-. |......+...+..- ..|..||++|.+......+
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~ 196 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI 196 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 33444556677899999866 555555555544432 2366788888888765543
No 298
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.36 E-value=0.0051 Score=55.25 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999973
No 299
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.36 E-value=0.012 Score=54.02 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++=+++||.--. |......+...+..- ..|..||++|.+......+
T Consensus 124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 181 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL 181 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444556677899999866 555555555554431 2356788888887765443
No 300
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.36 E-value=0.053 Score=49.99 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+..++-+++||+.-. |......+...+..-..+..||++|.+.+.....
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI 208 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 344455556677999999866 5555455544443322245788888887766543
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.096 Score=50.57 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++=++|+|++.. .......|...+-+...++.+|++|.+. .+...+.. ....+.+. ++ ++++..+.+.
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~------~~--~~~~~~~~L~ 176 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIH------PP--EEQQALDWLQ 176 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCC------CC--CHHHHHHHHH
Confidence 5666888999987 6778888888888877788888777765 44434310 12333888 99 9999988887
Q ss_pred Hhh
Q 015752 369 LHY 371 (401)
Q Consensus 369 ~~a 371 (401)
+..
T Consensus 177 ~~~ 179 (325)
T PRK06871 177 AQS 179 (325)
T ss_pred HHh
Confidence 764
No 302
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.35 E-value=0.035 Score=50.14 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-++++|+.-. |......+...+... ..+..||++|.+......
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 33444455677999999866 555555555554432 236778888888775543
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.035 Score=54.46 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIP 266 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 266 (401)
-.+++++|+.|+||||++.++......+.....+..++... .....+-+....+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 36889999999999999999987321111123445554322 22334444554555543
No 304
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0026 Score=52.07 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 305
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.34 E-value=0.038 Score=49.51 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=31.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLL 334 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~ 334 (401)
-.+...+..++=++++|+.-. |......+...+.. ...|..||++|.+..-.
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 188 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL 188 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh
Confidence 334455556667899999866 55555555555432 12356788888865433
No 306
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.34 E-value=0.048 Score=48.77 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=28.4
Q ss_pred CceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 291 NKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
..+-+++||.... |...-..+...+.....+..||++|.+......
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence 4456888999866 444444444444332224668888888876643
No 307
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.01 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.+|+|.|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999988
No 308
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.33 E-value=0.0091 Score=54.16 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 309
>PF14516 AAA_35: AAA-like domain
Probab=96.33 E-value=0.13 Score=49.96 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=67.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC----C-CCHHHHH---
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL----D-YDFRRIL--- 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~-~~~~~~~--- 257 (401)
+..|.|...-+++.+.|... -..+.|.|+..+|||+|...+.+. .+..=-.+++++... . .+....+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 44577886677777777652 258889999999999999999873 332223455776544 1 2344444
Q ss_pred -HHHHHHcCCCCCCccccC--c-CHHHHHHHHHHHc-C--CceEEEEEeCCCC
Q 015752 258 -DDIIKSVIPPSRVSVIIG--E-DYQLKKSILRDYL-T--NKKYFIVLDDVFD 303 (401)
Q Consensus 258 -~~i~~~l~~~~~~~~~~~--~-~~~~l~~~l~~~L-~--~kr~LlVlDdv~~ 303 (401)
..|..++.....-..-+. . ........+.+++ . +++.+|+||++..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 444555544321000000 0 2334444555543 2 5899999999976
No 310
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.042 Score=50.70 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=34.4
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-+++||..-. |......+...+..- ..|..||++|.+.......
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 207 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT 207 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 4444555677999999876 666666665555432 2366788888887766543
No 311
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.023 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++++|++|+||||++.+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 312
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.31 E-value=0.02 Score=51.94 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
+.+.+..++-+++||+... |....+.+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 4444556677899999876 555555555544432234568888887765543
No 313
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.31 E-value=0.036 Score=50.00 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-++++|+--. |......+...+..- ..|..||++|.+......
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 34444555667999999866 555555554444321 235678888888766554
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.084 Score=51.35 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=50.5
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++=++|+|+... +...+..|...+-+...++.+|++|.+ ..+...+.. ....+.+. ++ +.++..+.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~------~~--~~~~~~~~L~ 201 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMT------VP--APEAAAAWLA 201 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEec------CC--CHHHHHHHHH
Confidence 4556888999987 788889999888877777777666555 444444411 12334888 89 9999988887
Q ss_pred Hh
Q 015752 369 LH 370 (401)
Q Consensus 369 ~~ 370 (401)
+.
T Consensus 202 ~~ 203 (342)
T PRK06964 202 AQ 203 (342)
T ss_pred Hc
Confidence 64
No 315
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.30 E-value=0.0082 Score=58.60 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=65.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
...+.|.|+.|+||||+.+.+.+ .+......+++. +..+... ..... ..+.... ....+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~----evg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR----EVGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEcc----ccCCCCcCHHHHHHHh
Confidence 36799999999999999998876 344344445543 3222111 00000 0000000 0111222345567777
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
|...+=.|++|.+.+ .+.+...... ...|..|+.|+...++..
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 888899999999988 7766654433 233556777777765543
No 316
>PRK08233 hypothetical protein; Provisional
Probab=96.30 E-value=0.0033 Score=55.07 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.30 E-value=0.045 Score=55.98 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE-------E----cCCCCCHHH------------------HHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV-------R----VSLDYDFRR------------------ILDDI 260 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~----vs~~~~~~~------------------~~~~i 260 (401)
.+++|+|..|+|||||.+.+..-... ..+.+++ . .....++.+ ....+
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 58999999999999999999863211 1111211 1 111112111 11223
Q ss_pred HHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 015752 261 IKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLA 335 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~ 335 (401)
++.++........... +. +...-.+...|...+-+|+||.--. |......+...+.. ...|..||++|.+.....
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 3333332110011222 22 2223345555666788999999866 55444444444332 124667888998877655
Q ss_pred hc
Q 015752 336 SL 337 (401)
Q Consensus 336 ~~ 337 (401)
..
T Consensus 208 ~l 209 (549)
T PRK13545 208 SF 209 (549)
T ss_pred Hh
Confidence 43
No 318
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.29 E-value=0.051 Score=48.79 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc-------------------CCCC-------------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV-------------------SLDY------------------- 251 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~------------------- 251 (401)
.|++|+|++|+|||||.+-+..= ...=++.+|+.- =|.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 58999999999999999988642 222223344421 0111
Q ss_pred ------CHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCC
Q 015752 252 ------DFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DEN 320 (401)
Q Consensus 252 ------~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~ 320 (401)
...+.-.++++..+.......-... .-++-.-.|.+.|.=++-++.+|..-+ |++.-.++...+.. ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1233444555555544322100111 333444556667777788899999977 66655555444332 234
Q ss_pred CcEEEEecCChhHHhhc
Q 015752 321 GSRVFITVTDPDLLASL 337 (401)
Q Consensus 321 gs~iivTTR~~~v~~~~ 337 (401)
|-..|+.|..-..|..+
T Consensus 186 GmTMivVTHEM~FAr~V 202 (240)
T COG1126 186 GMTMIIVTHEMGFAREV 202 (240)
T ss_pred CCeEEEEechhHHHHHh
Confidence 66677777777777665
No 319
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.034 Score=52.44 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
..-.+...|..++-+++||+... |......+...+..- ..|..||++|.+.+.+..
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 33445555667788999999876 555555555544321 236678888888776543
No 320
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.29 E-value=0.045 Score=50.22 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|.--. |......+...+... ..|..||++|.+.+....+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 209 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL 209 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 34444556678999999866 555445554444321 1456688888887766553
No 321
>PTZ00301 uridine kinase; Provisional
Probab=96.28 E-value=0.0043 Score=56.12 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998865
No 322
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.032 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|.|+.|.|||||.+.+..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 323
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.047 Score=51.36 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+-.++-+|+||.--. |...-..+...+..- ..|..||++|.+.+....
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR 226 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34555556778899999866 555555555544321 236678888888765544
No 324
>PRK10908 cell division protein FtsE; Provisional
Probab=96.25 E-value=0.06 Score=48.95 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||.--. |...-+.+...+... ..+..||++|.+.+.....
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34444556677999999866 554444444433321 2356788888887766554
No 325
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.25 E-value=0.028 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=35.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHH-HHHhhCCCCC-C-CcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWI-DVEELLPDDE-N-GSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~~~-~-gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-++++|+.-. |+.... .+...+.... . |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 45566677889999999876 555555 5555443322 2 5678888888876644
No 326
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.24 E-value=0.035 Score=51.08 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||..-. |......+...+..- ..+..||++|.+.......
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 44555566778999999876 555555555544431 2356789999988765543
No 327
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.23 E-value=0.024 Score=58.31 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccC-ccccc-----CeEEEEEcCC---------------CC-C-HHHHHHHHHHHcCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNH-VKFYF-----DCHAWVRVSL---------------DY-D-FRRILDDIIKSVIP 266 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~vs~---------------~~-~-~~~~~~~i~~~l~~ 266 (401)
.-|+|+|+.|+|||||.+.+..... ..... -.+.++.-.. .+ + ...-.+..+..++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 4689999999999999999954211 11100 0112221111 01 1 13444555555544
Q ss_pred CCCCc-cccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 267 PSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 267 ~~~~~-~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
..... ..+.. .-+...-.+...+-.++-+||||.--+ |.+..+.|..+|.+- +|+ ||+.|.+......+
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~v 502 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRV 502 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhh
Confidence 33221 12222 333444556666678899999999866 666667777666542 354 88889999888776
No 328
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.23 E-value=0.048 Score=52.01 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=94.2
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCH-HHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDF-RRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~~i~ 261 (401)
..++|-.++..++-.|+... .+...-+.|+|+.|+|||+|.-....+ .+.|. ...-|........ .-.+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 46899999999998888641 223445678899999999998877765 22232 3344445444332 22456666
Q ss_pred HHcCCCCCCc-cccCcCHHHHHHHHHHHcC------CceEEEEEeCCCC-Cc-h---hHHHHHhhCCC-CCCCcEEEEec
Q 015752 262 KSVIPPSRVS-VIIGEDYQLKKSILRDYLT------NKKYFIVLDDVFD-DS-E---IWIDVEELLPD-DENGSRVFITV 328 (401)
Q Consensus 262 ~~l~~~~~~~-~~~~~~~~~l~~~l~~~L~------~kr~LlVlDdv~~-~~-~---~~~~l~~~l~~-~~~gs~iivTT 328 (401)
.|+....... .... +..+....+...|+ +-++.+|+|.+.- .+ . -.-.+...-.. ..+-|-|-+||
T Consensus 101 rql~~e~~~~~k~~g-sfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRIVKSFG-SFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhhheeec-ccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6554332111 0111 33333334444442 2368888887743 11 1 11112222222 23455566888
Q ss_pred CChhHH---hhchhC-CCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 329 TDPDLL---ASLEME-NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 329 R~~~v~---~~~~~~-~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
|-.-.. ..+... ....+ -++ ++ +-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~------~~--~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLP------SL--PLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccC------CC--ChHHHHHHHHHHh
Confidence 865322 222111 22223 444 77 8899999999886
No 329
>PRK10867 signal recognition particle protein; Provisional
Probab=96.22 E-value=0.057 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|.+|+||||.+.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997766654
No 330
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.041 Score=49.48 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLL 334 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~ 334 (401)
.+...+..++-++++|+--. |......+...+.. ...|..||++|.+....
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 34445556778999999866 55555566555543 23466788888876554
No 331
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.21 E-value=0.052 Score=50.28 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||..-. |...-..+...+.. ...|..||++|.+......+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV 210 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34445556677999999866 55444455444332 12356788888887765543
No 332
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.21 E-value=0.056 Score=50.33 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=35.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+..++-+++||..-. |....+.+...+..- ..|..||++|.+.......
T Consensus 146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (256)
T TIGR03873 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY 203 (256)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344455556778999999866 555555555544432 2366788888887766543
No 333
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.17 Score=49.22 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---ccccCe-----EEEEEcCCCCCHHHHHHHHHHHcCC
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KFYFDC-----HAWVRVSLDYDFRRILDDIIKSVIP 266 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~-----~~wv~vs~~~~~~~~~~~i~~~l~~ 266 (401)
-+++...+..+ .-..-+.+.|+.|+||+++|..+..-.-- ...-.| +.++..+..+|+..+ .+
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 45566665542 33457789999999999999887542110 000000 011111112221110 00
Q ss_pred CCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchh
Q 015752 267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEM 339 (401)
Q Consensus 267 ~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~ 339 (401)
.. .-.. ..+++....... ..+++=++|+|+.+. +.+.-..|...+-+...++.+|++|.+. .+...+..
T Consensus 82 ~~----~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 82 EK----GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cc----ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00 0011 233333322221 135677899999977 6777888888888777788777777664 45544421
Q ss_pred CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
++ ..+.+. ++ +.+++.+.+.+..
T Consensus 158 RC-q~~~~~------~~--~~~~~~~~L~~~~ 180 (334)
T PRK07993 158 RC-RLHYLA------PP--PEQYALTWLSREV 180 (334)
T ss_pred cc-ccccCC------CC--CHHHHHHHHHHcc
Confidence 12 233777 88 8888888776543
No 334
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.21 E-value=0.033 Score=49.64 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE---------------EcCCCCC---HHHHHHHHHHHcCCCCCC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV---------------RVSLDYD---FRRILDDIIKSVIPPSRV 270 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~~~~~i~~~l~~~~~~ 270 (401)
-.+++|.|..|.|||||.+.+..-.. .......+++ .+.+.+. ...+...+.......
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 35889999999999999999986320 0111222221 1111110 011222211100000
Q ss_pred ccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752 271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD 332 (401)
Q Consensus 271 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~ 332 (401)
..+ .-+...-.+...+..++-++++|+.-. |......+...+..- ..|..||++|.+..
T Consensus 111 --~LS-~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 --GLS-GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred --cCC-HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 011 122223344555556677999999866 555555555544432 23667888888764
No 335
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.20 E-value=0.039 Score=50.34 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 335 (401)
+...|...+=+++||+--. |....+.+...+..- ..|..||++|.+.....
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 4444555667999999866 555555555555331 23567888888877654
No 336
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.18 Score=48.50 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752 291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI 368 (401)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~ 368 (401)
+++=++|+|++.. +......|...+-+...++.+|++|.+. .+...+.. ....+.+. ++ +.+++.+.+.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~------~~--~~~~~~~~L~ 177 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVT------PP--STAQAMQWLK 177 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCC------CC--CHHHHHHHHH
Confidence 4556889999977 6778888988888777778777766664 45444411 12333888 88 9998888776
Q ss_pred Hh
Q 015752 369 LH 370 (401)
Q Consensus 369 ~~ 370 (401)
+.
T Consensus 178 ~~ 179 (319)
T PRK06090 178 GQ 179 (319)
T ss_pred Hc
Confidence 54
No 337
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.19 E-value=0.035 Score=56.43 Aligned_cols=134 Identities=11% Similarity=0.023 Sum_probs=69.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
..++|......++...+..-......+.|.|..|.||+++|+.+.... .......+-++...- ....+...+ ++
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l--fg 207 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL--FG 207 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh--cC
Confidence 357777777777776664422233457899999999999999997622 111122222332222 223333322 22
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP 331 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~ 331 (401)
.... .+...... ..........-.|+||++.. .......|...+..+. .+.+||.||...
T Consensus 208 ~~~~---~~~~~~~~---~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 208 HEKG---AFTGANTR---RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCC---CCCCcccC---CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1110 01100000 00011112234488999977 5666677777665432 245788887654
No 338
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.052 Score=50.09 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-++++|..-. |......+...+... ..|..||++|.+......
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 34444556777999999866 555555555554432 135678888888776544
No 339
>PHA02244 ATPase-like protein
Probab=96.19 E-value=0.025 Score=55.09 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=28.0
Q ss_pred CccccccccH----HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGR----EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~----~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|..... ..+..++.. +. -|.|+|++|+|||+||+.+++
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~---~~-PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA---NI-PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc---CC-CEEEECCCCCCHHHHHHHHHH
Confidence 4455544333 344455433 22 356799999999999999987
No 340
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.19 E-value=0.0083 Score=55.28 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|..-. |....+.+...+... ..+..||++|.+...+..+
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~ 197 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV 197 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 34444555678899999866 666666665555432 2266788888888765443
No 341
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.18 E-value=0.0044 Score=55.92 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+..+|+|.|.+|+|||||++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 342
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.18 E-value=0.028 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998864
No 343
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.038 Score=52.26 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
..-.|...|..++-+++||+... |...-..+...+..- ..|..||++|.+......
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~ 206 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL 206 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 33445555666788999999877 555555555544431 236778888888766543
No 344
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.17 E-value=0.0091 Score=56.26 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++.+... -+-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence 4566666653 24567999999999999999876
No 345
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.044 Score=50.44 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+...+-+++||.--. |......+...+..- ..|..||++|.+.+.....
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~ 211 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY 211 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444556677999999876 555555555544432 2356788888887766543
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.015 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999884
No 347
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.17 E-value=0.032 Score=51.75 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=70.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccc---c-------------c-CeEEEEE----------------cCC------
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKF---Y-------------F-DCHAWVR----------------VSL------ 249 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-------------F-~~~~wv~----------------vs~------ 249 (401)
-.+++|+|+.|+|||||.+.++.-...+. . + ....++. .+.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 46899999999999999999976211100 0 0 0111221 010
Q ss_pred --CCC--HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 015752 250 --DYD--FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DE 319 (401)
Q Consensus 250 --~~~--~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~ 319 (401)
.++ -.+.....++.++........+.+ .-+...-.+...|..+.=+|+||.--+ |...--.++..+.. ..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 011 122455556666554332223444 333344455666778888889998644 32211222222222 23
Q ss_pred CCcEEEEecCChhHHhhc
Q 015752 320 NGSRVFITVTDPDLLASL 337 (401)
Q Consensus 320 ~gs~iivTTR~~~v~~~~ 337 (401)
.|..||+++.+.+.|...
T Consensus 188 ~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 188 KGLTVVMVLHDLNLAARY 205 (258)
T ss_pred cCCEEEEEecCHHHHHHh
Confidence 477899999999888776
No 348
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.056 Score=51.05 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
..-.+...|..++-+++||+... |...-..+...+..- ..|..||++|.+.+....
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 33445555666778999999876 555555555544331 225678888888765543
No 349
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.17 E-value=0.044 Score=49.39 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++=+++||+--. |....+.+...+..- ..|..||++|.+......
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 34444555667999999866 555555555544431 235668888887765543
No 350
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.16 E-value=0.03 Score=57.71 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCCCCC--HHHHHHHHHHHcCCCCCCc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSLDYD--FRRILDDIIKSVIPPSRVS 271 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~ 271 (401)
+++|++.+.+ ..||.|+|..|+|||| |++.+|.+. |...--|-+.|+-. .-.+.+.+...++...+..
T Consensus 361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 4566666643 4689999999999997 899998743 22111333444433 3445666666665443332
Q ss_pred ----cccCc------------CHHHHHHHHHHHcCCceEEEEEeCCCC---CchhH-HHHHhhCCCCCCCcEEEEecCCh
Q 015752 272 ----VIIGE------------DYQLKKSILRDYLTNKKYFIVLDDVFD---DSEIW-IDVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 272 ----~~~~~------------~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~-~~l~~~l~~~~~gs~iivTTR~~ 331 (401)
-.+++ +.--+.+.|....-.|=-.||+|..+. +.+.+ .-+...+.. ...-|+||||-.-
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm 510 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATM 510 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccc
Confidence 00111 222233334433334556889999866 22222 222333332 3478999998776
Q ss_pred hHH
Q 015752 332 DLL 334 (401)
Q Consensus 332 ~v~ 334 (401)
+.-
T Consensus 511 ~a~ 513 (1042)
T KOG0924|consen 511 DAQ 513 (1042)
T ss_pred cHH
Confidence 543
No 351
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.04 Score=55.50 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=36.4
Q ss_pred Cccccccc---cHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFER---GREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~---~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.++-|-|+ ++++|++.|.+. ..=++=|.++|++|.|||-||+.++..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 67778664 567778888763 233567889999999999999999873
No 352
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.073 Score=55.16 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||.-.. |...-..+...+.. .|..||++|.+.......
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence 344445556778999999877 65555556555543 356688888888765543
No 353
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.049 Score=49.94 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=35.1
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||..-. |......+...+..- ..|..||++|.+.+....+
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 34455556778999999866 555555555555432 2366788888887765544
No 354
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.026 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|..|+|||||.+.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 355
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.13 E-value=0.043 Score=50.59 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
+...|-.++-+++||.--. |...-..+...+..- ..|..||++|.+......
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~ 211 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK 211 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3444455667899999866 554444444444321 235678888888776544
No 356
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.13 E-value=0.044 Score=50.89 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-+++||+.-. |......+...+..- ..|..||++|.+......
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 34444555667899999866 555555555544431 236678888888765543
No 357
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.048 Score=53.25 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=35.5
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||.--. |......+...+..- ..|..||++|.+.+....+
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~ 207 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344455556778999999866 555555555555432 2366788888888765543
No 358
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.12 E-value=0.019 Score=52.61 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-|.|.|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999977
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.078 Score=51.98 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL 285 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l 285 (401)
+..+++++|+.|+||||++..++.. ....-..+.+++... .....+-++...+.++.+. ... +..++...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 4579999999999999999888763 222223455565532 2233444555555554331 111 555555555
Q ss_pred HHHc-CCceEEEEEeCCCC---CchhHHHHHhhC
Q 015752 286 RDYL-TNKKYFIVLDDVFD---DSEIWIDVEELL 315 (401)
Q Consensus 286 ~~~L-~~kr~LlVlDdv~~---~~~~~~~l~~~l 315 (401)
...- .+..=+|++|-.-. +....+.+....
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 4432 13456788888744 233444554443
No 360
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.063 Score=48.48 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=33.3
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-+++||+--. |...-..+...+..- ..|..||++|.+.+....
T Consensus 140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 344455566778999999866 554444554444321 225678888888765543
No 361
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.11 E-value=0.048 Score=52.32 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|-.++=+++||.--. |+..-..+...+.. ...|..||+||.+.+-+..+
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 34555667788999999866 54433333333322 12477899999998765443
No 362
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.10 E-value=0.011 Score=56.50 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c---ccC------------eEEEEEcCC----CCCH----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F---YFD------------CHAWVRVSL----DYDF---------------- 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~------------~~~wv~vs~----~~~~---------------- 253 (401)
.++++.|+.|+|||||.+.+..-.+-. . .+. .+.++.-.. ..++
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 589999999999999999997632110 0 000 122221111 1112
Q ss_pred --HHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCC-cEEE
Q 015752 254 --RRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENG-SRVF 325 (401)
Q Consensus 254 --~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~g-s~ii 325 (401)
..-...+++.++........+.. .-....-.+...|-.++=|++||.--+ |+..-..+...+.. ...| ..||
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvl 191 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 22344566666555311111222 122222334445567788999999766 54433333333332 1223 6799
Q ss_pred EecCChhHHhhc
Q 015752 326 ITVTDPDLLASL 337 (401)
Q Consensus 326 vTTR~~~v~~~~ 337 (401)
+||...+-+..+
T Consensus 192 issH~l~e~~~~ 203 (293)
T COG1131 192 LSTHILEEAEEL 203 (293)
T ss_pred EeCCcHHHHHHh
Confidence 999998776664
No 363
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.071 Score=47.87 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
.+...+..++-+++||+... |....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 34444556778889999876 55555555554443233667888888776654
No 364
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.10 E-value=0.067 Score=55.18 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCc-cc--ccC---------------eEEEEEcCC----CCCH--------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHV-KF--YFD---------------CHAWVRVSL----DYDF-------------- 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------------~~~wv~vs~----~~~~-------------- 253 (401)
.+++|+|+.|+|||||.+.++.-... .+ .|+ .+.++.-.. ..++
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 58999999999999999999753110 00 011 122332110 0111
Q ss_pred HHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEec
Q 015752 254 RRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITV 328 (401)
Q Consensus 254 ~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTT 328 (401)
..-...+++.++........... .-+...-.+...|..++-+++||.--. |...-..+...+.. ...|..||++|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt 197 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197 (510)
T ss_pred HHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 12234455555543211111222 223333344555566788999999866 54433444433322 12366788999
Q ss_pred CChhHHhhc
Q 015752 329 TDPDLLASL 337 (401)
Q Consensus 329 R~~~v~~~~ 337 (401)
.+.......
T Consensus 198 Hd~~~~~~~ 206 (510)
T PRK15439 198 HKLPEIRQL 206 (510)
T ss_pred CCHHHHHHh
Confidence 887665443
No 365
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.10 E-value=0.054 Score=48.87 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+++||.--. |...-..+...+..- ..|..||++|.+......
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 344455556778899999866 554444554444321 235668888887665544
No 366
>PRK06547 hypothetical protein; Provisional
Probab=96.08 E-value=0.0086 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999873
No 367
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.08 E-value=0.03 Score=49.54 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 368
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.05 E-value=0.02 Score=52.96 Aligned_cols=91 Identities=10% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc---------CCCCCHHHH--HHHHHHHcCCCCCCc--cc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV---------SLDYDFRRI--LDDIIKSVIPPSRVS--VI 273 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~~--~~~i~~~l~~~~~~~--~~ 273 (401)
++...|.++||+|+||||..++++.+. ...+....-|++ .-+.++.+. .++.+++........ ..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 356688899999999999999999843 333332222332 223345443 567777766554332 00
Q ss_pred c---CcCHHHHHHHHHHHcCCceEEEEEeC
Q 015752 274 I---GEDYQLKKSILRDYLTNKKYFIVLDD 300 (401)
Q Consensus 274 ~---~~~~~~l~~~l~~~L~~kr~LlVlDd 300 (401)
. ....++.+..+.+.-..-.| +++|-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~-~liDT 123 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDY-VLIDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCE-EEEcC
Confidence 0 01334455555554433334 44454
No 369
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.054 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 370
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.05 E-value=0.097 Score=48.08 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
+...+..++=++++|+... |......+...+.....|..||++|.+......
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~ 203 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN 203 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 4444556677999999876 655555555544332246678888888776653
No 371
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.04 E-value=0.0058 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+...+|+|+|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 372
>PRK14528 adenylate kinase; Provisional
Probab=96.04 E-value=0.017 Score=51.12 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 373
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.04 E-value=0.0046 Score=45.26 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|.+|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 374
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.047 Score=50.78 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...+..++-++++|+.-. |...-..+...+..- ..|..||++|.+...+...
T Consensus 162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~ 220 (255)
T PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI 220 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence 344455566788999999866 544444444444321 2266788888888766553
No 375
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.03 E-value=0.081 Score=49.60 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
-.++.|.|.+|+||||++.++..... ..+=..++|++...+ ..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHH
Confidence 35788999999999999998876321 221246788876553 3344444433
No 376
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.088 Score=48.28 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=35.3
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+++||.... |......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345555667788999999876 655555555544432226678888888776643
No 377
>PRK03839 putative kinase; Provisional
Probab=96.01 E-value=0.0044 Score=54.44 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|.|.|++|+||||+++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 378
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.01 E-value=0.07 Score=49.82 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=30.7
Q ss_pred CceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 291 NKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.++-+++||.--. |......+...+..- ..|..||++|.+.......
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 207 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY 207 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 4778999999866 555555555444431 2356788888887765543
No 379
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.068 Score=53.65 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV 247 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 247 (401)
.++++++|++|+||||++.+++........-..+..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 358999999999999988887652220122234555554
No 380
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.026 Score=58.74 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
.-++..++|++|+||||||.-++++. .| .++=|++|..-+...+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS------------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence 45789999999999999999998732 22 3566788887766666555555443321
Q ss_pred Hc--CCceEEEEEeCCCC
Q 015752 288 YL--TNKKYFIVLDDVFD 303 (401)
Q Consensus 288 ~L--~~kr~LlVlDdv~~ 303 (401)
.+ .+++.-||+|.+..
T Consensus 381 ~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccccCCCcceEEEecccC
Confidence 12 15778899999866
No 381
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.056 Score=55.49 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=88.7
Q ss_pred CccccccccHHHHHHH---HhcC--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDL---LIEG--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~---L~~~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.+...+.+.+. .... -.....+.++|++|.|||.||+.+++ .....|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence 5566655555444433 3321 13455888999999999999999998 455455332221
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C---c-------hhHHHHHhhCCCCC--C
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D---S-------EIWIDVEELLPDDE--N 320 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~---~-------~~~~~l~~~l~~~~--~ 320 (401)
+++....+. ....+...+....+..++.|.+|.+.. . . .....+...+.... .
T Consensus 311 ----~l~sk~vGe---------sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 311 ----ELLSKWVGE---------SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred ----HHhccccch---------HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 222222111 444555555555567899999999854 1 0 23344555554322 2
Q ss_pred CcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 321 GSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 321 gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+-.||-||..+...... +.+..+.. .+. +- +.++..+.|..+..
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~------~p--d~~~r~~i~~~~~~ 424 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVP------LP--DLEERLEIFKIHLR 424 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecC------CC--CHHHHHHHHHHHhc
Confidence 33345555555443321 11123444 666 55 89999999999986
No 382
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.99 E-value=0.077 Score=48.53 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||+.-. |......+...+..- ..|..||++|.+.+.....
T Consensus 135 ~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 192 (230)
T TIGR02770 135 MIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARI 192 (230)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444555667999999866 555545554444432 2356788888887665443
No 383
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.078 Score=49.87 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+++||..-. |......+...+..- ..|..||++|.+......
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYE 201 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 344555566778999999866 555445554444331 235678888888776544
No 384
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.99 E-value=0.044 Score=50.34 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 260 (401)
.-.++.|.|.+|+||||||.+++... .+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34589999999999999986665421 1222 3456666333 445555555
No 385
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.98 E-value=0.017 Score=52.40 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-++++|+--. |......+...+... ..|..||++|.+......+
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3344455677899999866 555555555544331 2467889999888765443
No 386
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.069 Score=48.92 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++=+++||+.-. |......+...+..- ..|..||++|.+......
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 344555566778899999866 665556665555432 226678888888765443
No 387
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.97 E-value=0.097 Score=47.65 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
-.+...+-.++-+++||+-.. |......+...+..-..+..||++|.+.....
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 334455556778999999866 55555555444433222356888888776654
No 388
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.97 E-value=0.061 Score=48.80 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 335 (401)
.+...+..++=+++||.--. |......+...+..- ..|..||++|.+.....
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 33444445666899999866 555555555544421 23567888888876654
No 389
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.96 E-value=0.015 Score=56.58 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++=+++||.--. |+..-..+...+.. ...|..||+||.+.+.+..+
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 238 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 344455567788999999866 54433333333322 12367799999988765543
No 390
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.96 E-value=0.047 Score=49.92 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-+++||+--. |...-+.+...+.. ...|..||++|.+.+....
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLS 198 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44555566778999999866 44433444333322 1235678888888764444
No 391
>PTZ00494 tuzin-like protein; Provisional
Probab=95.95 E-value=0.2 Score=49.86 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=92.9
Q ss_pred CccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
..+|.|+.+-.-+.+.|.. +...++++.+.|.-|.||++|.+.....+.. ..++|.+.... +-++.+++.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHHHh
Confidence 6788888876666666654 4456899999999999999999987763222 35667776654 4677888999
Q ss_pred CCCCCCccccCcCHH----HHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChhHHhhch
Q 015752 265 IPPSRVSVIIGEDYQ----LKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPDLLASLE 338 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~----~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~ 338 (401)
+.+.-+ ... |.- +....-+....|+.-+||+-=-.- + ...+.+.. .|.+...-|.|++----+++....-
T Consensus 443 gV~nve--~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 443 GVSNVE--VCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred CCCChh--hhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhc
Confidence 887432 112 221 111222223456666777643211 0 11222221 2333445677877555444322210
Q ss_pred hCCCcce-ecccccCCCCCCCChHHHHHHHHHh
Q 015752 339 MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILH 370 (401)
Q Consensus 339 ~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~ 370 (401)
.-..-.. .++ ++ +..+|.+.-...
T Consensus 519 ~LPRLDFy~VP------nF--Sr~QAf~YtqH~ 543 (664)
T PTZ00494 519 SSRRLDFYCIP------PF--SRRQAFAYAEHT 543 (664)
T ss_pred cCccceeEecC------Cc--CHHHHHHHHhcc
Confidence 0011122 555 77 887777665443
No 392
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.95 E-value=0.099 Score=50.07 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++-+++||.--. |+..-..+...+.. ...|..||++|.+.+.+..+
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~ 201 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 201 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 34455567788999999866 54433333333322 12366789999888765543
No 393
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.94 E-value=0.084 Score=48.59 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-+++||..-. |......+...+... ..|..||++|.+.......
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 202 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3444445667999999866 555555555444321 2356788888887766543
No 394
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.93 E-value=0.028 Score=51.29 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 395
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.93 E-value=0.092 Score=49.33 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
...-.+...+-.++-+|+||+--. |......+...+... ..++.||++|.+......
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~ 217 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVER 217 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHH
Confidence 333445555667788999999866 555444554444322 226678888888766554
No 396
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.93 E-value=0.052 Score=50.60 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.+.+.+..++-+++||..-. |......+...+... ..|..||++|.+.......
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~ 218 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 344455566788999999866 555555555444321 2266788888888776543
No 397
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.062 Score=51.12 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.|...|..++-++++|+... |...-..+...+..- ..|..||++|.+.+....
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~ 211 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR 211 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 445556667888999999876 554444444444321 236678888888776544
No 398
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.92 E-value=0.03 Score=52.03 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 377999999999999999886
No 399
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.055 Score=49.92 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
+...+-.++-+++||+.-. |...-..+...+... ..|..||++|.+.......
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~ 202 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL 202 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 4444556677999999866 544444444444332 2256788888888755443
No 400
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.91 E-value=0.061 Score=49.39 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=33.6
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
+...+-.++-+++||+... |......+...+..-..|..||++|.+......
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 3444445677999999876 655555555444332236678888888877643
No 401
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.071 Score=50.31 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+...+=++++|+... |......+...+..- ..|..||++|.+......
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~ 202 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPV 202 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 334445556778899999877 665555555554431 235667777777665443
No 402
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.89 E-value=0.12 Score=48.50 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+++||+.-. |...-..+...+.. ...|..||++|.+......+
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~ 209 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQF 209 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 34555566778999999866 54433333333322 12467788899887765543
No 403
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.89 E-value=0.081 Score=49.43 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-+|+||+--+ |......+...+..- ..|..||++|.+......+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~ 219 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY 219 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444556677999999866 555555555555432 2367788888888765443
No 404
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.89 E-value=0.03 Score=51.98 Aligned_cols=192 Identities=10% Similarity=0.121 Sum_probs=94.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHh----hcccCcccccCeEEEEEcCCCC-CHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADT----YNNNHVKFYFDCHAWVRVSLDY-DFRRILDDI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v----~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 260 (401)
..+.++++....+..... .....-..++|+.|.||-|.+..+ |.-.-.+-.-+...|.+-|..- .+..+-..
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~- 89 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN- 89 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc-
Confidence 345556666666666544 345677889999999999866544 4321122233445555433320 00000000
Q ss_pred HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--------CceE-EEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752 261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--------NKKY-FIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT 329 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--------~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR 329 (401)
.++....+ +.+. |--.+++.+++.-+ .+.| ++|+-.+.. ..++-..|+...-.=.+.+|+|+...
T Consensus 90 -yHlEitPS---DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cn 165 (351)
T KOG2035|consen 90 -YHLEITPS---DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCN 165 (351)
T ss_pred -ceEEeChh---hcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEec
Confidence 00000000 1122 33333333333322 2344 445555433 34444555544333244677776322
Q ss_pred Ch-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 330 DP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 330 ~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
+. .+...+. ...-.+++. .. +++|-...+++.+-. ++..- | ++++.+|+ +|++.|
T Consensus 166 s~SriIepIr-SRCl~iRvp------ap--s~eeI~~vl~~v~~k---E~l~l-p--~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 166 STSRIIEPIR-SRCLFIRVP------AP--SDEEITSVLSKVLKK---EGLQL-P--KELLKRIAEKSNRNL 222 (351)
T ss_pred CcccchhHHh-hheeEEeCC------CC--CHHHHHHHHHHHHHH---hcccC-c--HHHHHHHHHHhcccH
Confidence 21 1222220 011223888 78 999999999998842 22222 2 78999999 998876
No 405
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.046 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.++|+|++|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999964
No 406
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.88 E-value=0.07 Score=54.69 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=31.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
.+...|..++=+++||.-.. |...-..+...+.. ...|..||++|.+......
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~ 200 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPD 200 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 34444455677899999876 55444444444332 1236678888888765544
No 407
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.01 Score=50.55 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=32.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP 267 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 267 (401)
+|.|.|++|+||||+|+.+.++.-++. .+.-.++++++...+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHcCCC
Confidence 689999999999999999998433321 12345777888777664
No 408
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.059 Score=53.14 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.|.+.|..++-+|+||.--. |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~ 200 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHh
Confidence 345555667788999999866 544444444433321 2256788888887655443
No 409
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.87 E-value=0.081 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 410
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.064 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|+|..|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 411
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.087 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|+|..|+|||||.+.+..-
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999653
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.17 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++++|+.|+||||++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987765
No 413
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.87 E-value=0.054 Score=54.86 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=56.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI 273 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 273 (401)
....+-+.|..+=..-.++.|.|.+|+|||||+.++... ....-..++|++.... ...+.. -+..++.......-
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 345555655444344578999999999999999998663 2222235778776543 333222 22334332111111
Q ss_pred cCc-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 274 IGE-DYQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 274 ~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
... +.+.+...+.+ .+.-++|+|.+-
T Consensus 154 ~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 154 LSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred cCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 122 45555444433 355689999874
No 414
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.13 Score=48.98 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=34.7
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+|+||..-. |......+...+.. ...|..||++|.+.+.+..
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 344555556777999999866 55555555544432 1236679999998875543
No 415
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.86 E-value=0.057 Score=50.66 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=80.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
++|+|-... .+++.++......-+.+.++|+.|+|||+-++.+++. .+...-+..+..++...++..+.....
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 566664443 3344444433333448889999999999999999882 233334467777777777777666655
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCC
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPD 317 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~ 317 (401)
..... ........+...+.+..-+|+.|+-.. ....++.|+.....
T Consensus 145 ~~~~~------~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 145 GATDG------TINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cccch------hHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 44211 667777778888889999999999876 56777777765443
No 416
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.85 E-value=0.036 Score=59.18 Aligned_cols=98 Identities=17% Similarity=0.070 Sum_probs=62.4
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc
Q 015752 198 LFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE 276 (401)
Q Consensus 198 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 276 (401)
|-..|- .+=..-+++-|.|.+|+|||||+.+++.. ....-..++|+.....++. ..+++++.+.....-...
T Consensus 48 LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~ 120 (790)
T PRK09519 48 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQP 120 (790)
T ss_pred HHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecC
Confidence 444443 33344678889999999999999876652 2223356799988777774 366777665332211111
Q ss_pred -CHHHHHHHHHHHcC-CceEEEEEeCCC
Q 015752 277 -DYQLKKSILRDYLT-NKKYFIVLDDVF 302 (401)
Q Consensus 277 -~~~~l~~~l~~~L~-~kr~LlVlDdv~ 302 (401)
..++....+...++ ++--|||+|.+-
T Consensus 121 ~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 121 DTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 44556666666654 467789999985
No 417
>PRK13409 putative ATPase RIL; Provisional
Probab=95.85 E-value=0.061 Score=56.43 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccCe-EEEEEcCCC------CCHHHH-------------HHHHHHHcCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFDC-HAWVRVSLD------YDFRRI-------------LDDIIKSVIP 266 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~------~~~~~~-------------~~~i~~~l~~ 266 (401)
.+++|+|..|+|||||++.++...... + .++. +.+ +.+. .++.+. ..++++.++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 589999999999999999998632111 1 0111 111 1221 122222 2333444433
Q ss_pred CCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhchhC
Q 015752 267 PSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASLEME 340 (401)
Q Consensus 267 ~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~~~ 340 (401)
.......... + -+...-.+...|..++-+++||.--. |...-..+...+..- ..|..||++|.+...+...
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~--- 520 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI--- 520 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh---
Confidence 2111112222 2 23333345556667888999999765 544444444444321 2356788888887766554
Q ss_pred CCcce-eccccc-----CCCCCCCChHHHHHHHHHhh
Q 015752 341 NGEKI-RLDSVL-----FGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 341 ~~~~~-~l~~~~-----~~~~L~~~~~ea~~Lf~~~a 371 (401)
. +++ .++.-. ...|+ +..+..+-|.+..
T Consensus 521 a-Drvivl~~~~~~~g~~~~~~--~~~~~~~~~l~~~ 554 (590)
T PRK13409 521 S-DRLMVFEGEPGKHGHASGPM--DMREGMNRFLKEL 554 (590)
T ss_pred C-CEEEEEcCcceeeeecCCch--hHHHHHHHHHHHc
Confidence 2 222 332111 11234 4567777777765
No 418
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.85 E-value=0.12 Score=48.11 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||.--. |......+...+... ..|..||++|.+.......
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~ 218 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 218 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344555556777999999866 555555555544332 2367788888888776653
No 419
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.84 E-value=0.072 Score=54.87 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 277 DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 277 ~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.-....-.|.+.|-.++=+|+||.--+ |.+...-|..+|.. -+| .+||.|.++.....+
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH
Confidence 345566677777788888999999766 55555556666653 235 699999999888776
No 420
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.84 E-value=0.042 Score=55.57 Aligned_cols=99 Identities=18% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG 275 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 275 (401)
..+-+.|..+=..-.++.|.|.+|+|||||+.+++.... ..-..++|++....+ ..+. .-++.++.......-..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~-~ra~rlg~~~~~l~~~~ 141 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIK-LRAERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHH-HHHHHcCCChhcEEEeC
Confidence 444454544433456899999999999999999987322 222357787765433 3332 22445543221110111
Q ss_pred c-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 276 E-DYQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 276 ~-~~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
. +.+.+...+.+ .+.-+||+|.+.
T Consensus 142 e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 142 ETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCCHHHHHHHHHh---hCCCEEEEechh
Confidence 1 44444444432 356689999974
No 421
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.08 Score=49.92 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLA 335 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~ 335 (401)
-.+...+..++-+++||.--. |...-..+...+.. ...|..||++|.+.+...
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 344555666778999999866 54444444443322 123677888888877664
No 422
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.84 E-value=0.55 Score=47.68 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=81.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc---------cccC-----------eEEEE
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK---------FYFD-----------CHAWV 245 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------~~F~-----------~~~wv 245 (401)
..-+|.++.. .|...|.-+-+--.-|+++|+.|+|||||.+.++-+..-. .+|. ...|.
T Consensus 394 nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 394 NVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred ccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhH
Confidence 3345666555 4444443332233467899999999999999998763211 1111 01111
Q ss_pred E--c---CCCCCHHHHHHHHHHHcCCCCCCc-cccCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC--CchhHHHHHhhC
Q 015752 246 R--V---SLDYDFRRILDDIIKSVIPPSRVS-VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD--DSEIWIDVEELL 315 (401)
Q Consensus 246 ~--v---s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~~l~~~l 315 (401)
. + -.+-...+..+.|+...+...... ....+ +..+....+..+ .-..+.|||||.--+ |.+..+.+..++
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai 552 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI 552 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH
Confidence 0 0 001234556777777777653221 12222 223333333333 346788999999876 666677777777
Q ss_pred CCCCCCcEEEEecCChhHHhh
Q 015752 316 PDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 316 ~~~~~gs~iivTTR~~~v~~~ 336 (401)
.+- .|+ +|++|.+-.+...
T Consensus 553 Ne~-~Gg-vv~vSHDfrlI~q 571 (614)
T KOG0927|consen 553 NEF-PGG-VVLVSHDFRLISQ 571 (614)
T ss_pred hcc-CCc-eeeeechhhHHHH
Confidence 543 344 6666776544433
No 423
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.061 Score=49.10 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=34.2
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
.-.|...|..++-+++||+-.. |....+.+...+..-..+..||++|.+.....
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 3344555567778999999876 55554555444433223667888888877654
No 424
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.072 Score=50.46 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++=++++|+-.. |......+...+..- ..|..||++|.+.+....
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~ 209 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM 209 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 334455556778999999877 666556665555431 236778888888776543
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.12 Score=54.76 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
...-.|...|-.++=+|+||.--+ |...-..|...+... +..||++|.+......+
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHh
Confidence 333445555667778999999876 544444455555432 23588888888776654
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.82 E-value=0.13 Score=51.49 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|.+|+||||++.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 427
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.82 E-value=0.01 Score=50.88 Aligned_cols=36 Identities=14% Similarity=-0.132 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR 246 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 246 (401)
..+|-|.|.+|+||||||+.+.. ++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999988 5555445555553
No 428
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.80 E-value=0.017 Score=51.68 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q 015752 210 SVVAILDSGGFDKTAFAADTY 230 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~ 230 (401)
++++|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 429
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.14 Score=47.36 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-+++||+.-. |......+...+..-..+..||++|.+......
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAAR 210 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33444556778999999866 555444444444332235678888888776544
No 430
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.79 E-value=0.0082 Score=54.12 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 201 LLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 201 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
|+..+....+.|.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4555556778999999999999999999976
No 431
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.082 Score=50.70 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=32.7
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+|+||..-. |...-..+...+.. ...|..||++|.+.+.+..
T Consensus 174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 345555667788999999866 54433344333322 1236678888888764433
No 432
>PRK13409 putative ATPase RIL; Provisional
Probab=95.78 E-value=0.054 Score=56.80 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||.+.+..
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999976
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.78 E-value=0.0041 Score=55.09 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT 290 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 290 (401)
++.|.|+.|.||||+.+.+.-.... .+-.+.+|..-.. -..+..++..++.......... ....-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s-~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLS-TFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhCCCeeehheE----ecccceEEEEeCCCCchhcccc-HHHHHHHHHHHHHH
Confidence 4679999999999999998732111 1111111111000 0001111111111110000111 12222223444443
Q ss_pred --CceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 291 --NKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 291 --~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
+++-|+++|..-. |+.+-.. +...+.. ..++.+|++|...++...+
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 4889999999866 4332222 2233322 2367899999999887765
No 434
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.77 E-value=0.04 Score=51.60 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCc--ccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc-C-----H
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHV--KFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE-D-----Y 278 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~-~-----~ 278 (401)
.-++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++... +.+++.++...-.....-. ...++ . .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35689999999999999988874331 22346788888888654 5556666555322111000 00010 1 1
Q ss_pred HHHHHHHHHHc--C-CceEEEEEeCCCC
Q 015752 279 QLKKSILRDYL--T-NKKYFIVLDDVFD 303 (401)
Q Consensus 279 ~~l~~~l~~~L--~-~kr~LlVlDdv~~ 303 (401)
....-.+.+++ + ++++|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 12223344554 3 7999999999844
No 435
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.078 Score=49.69 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.-.+...+..++-+++||+--. |...-..+...+..- ..|..||++|.+......
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3344555566788999999866 555544444444321 225678888888775543
No 436
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.75 E-value=0.013 Score=48.88 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=29.2
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc
Q 015752 193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
++..++.+.|...-..-.+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554322334589999999999999999998843
No 437
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.017 Score=56.65 Aligned_cols=57 Identities=7% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~ 337 (401)
..-.|.+.|..++-+++||.--+ |...-+.+...+.. ...|..+|++|.+...+..+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 201 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL 201 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 33445555667888999999866 44333334333322 12366788888887655443
No 438
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.75 E-value=0.029 Score=55.99 Aligned_cols=89 Identities=9% Similarity=0.107 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc-C-----HHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE-D-----YQL 280 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~-~-----~~~ 280 (401)
..++|+|..|+|||||++.+++. . ..+.++..-+++... +.+++.+++..-.....-. ...+. . ...
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999862 1 224566667777654 3445555544322111000 00010 1 111
Q ss_pred HHHHHHHHc--CCceEEEEEeCCC
Q 015752 281 KKSILRDYL--TNKKYFIVLDDVF 302 (401)
Q Consensus 281 l~~~l~~~L--~~kr~LlVlDdv~ 302 (401)
..-.+.+++ +|+++||++||+-
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChH
Confidence 222344444 6899999999984
No 439
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.75 E-value=0.069 Score=48.77 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.+...+..++-++++|+.-. |......+...+..- ..|..||++|.+.+.....
T Consensus 141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 34444555678899999866 555555555444431 1256788888887765543
No 440
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.74 E-value=0.13 Score=47.61 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
+...+..++-++++|+--. |......+...+..-..+..||++|.+.......
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~ 209 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARI 209 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHh
Confidence 4444555677999999865 5554455544443322235678888887755443
No 441
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.34 Score=44.45 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=90.8
Q ss_pred ccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752 189 SHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 257 (401)
-|.+..+.+|.+.+.-. =.+++-+.++|++|.|||-||+.+++ ..++.|+.+|... +.
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgse----lv 218 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGSE----LV 218 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechHH----HH
Confidence 34677777776655321 23566778999999999999999998 3445667777642 22
Q ss_pred HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-CceEEEEEeCCCC--C----------c---hhHHHHHhhCCC--CC
Q 015752 258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD--D----------S---EIWIDVEELLPD--DE 319 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~--~----------~---~~~~~l~~~l~~--~~ 319 (401)
+..+ +. ...+...+.-..+ .-+..|.+|.+.+ . . ...-.|...+.. ..
T Consensus 219 qk~i----ge----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 219 QKYI----GE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHh----hh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 2211 11 1112222222222 3567788888754 1 0 011223333332 24
Q ss_pred CCcEEEEecCChhHHhhchhCCCcce--ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHhccC
Q 015752 320 NGSRVFITVTDPDLLASLEMENGEKI--RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCW 396 (401)
Q Consensus 320 ~gs~iivTTR~~~v~~~~~~~~~~~~--~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~~C~ 396 (401)
++-+||+.|..-++....- -.+..+ .++ |+ |- +++.-.+++.-+.... +-...-.++.||.++.-|-
T Consensus 285 knikvimatnridild~al-lrpgridrkie---fp-~p--~e~ar~~ilkihsrkm---nl~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPAL-LRPGRIDRKIE---FP-PP--NEEARLDILKIHSRKM---NLTRGINLRKIAEKMPGAS 353 (404)
T ss_pred cceEEEEeccccccccHhh-cCCCccccccc---CC-CC--CHHHHHHHHHHhhhhh---chhcccCHHHHHHhCCCCc
Confidence 5678888777666543220 133444 333 32 33 4555555555444321 1111234678888877443
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.72 E-value=0.054 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998763
No 443
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.074 Score=50.27 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||..-. |......+...+..- ..|..||++|.+.+.....
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 334445556778999999866 555545554444321 2366788888887765443
No 444
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.026 Score=53.44 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++=+|+||+.-. |......+...+..- ..|..||++|.+......
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~ 206 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ 206 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 344455556778999999866 665556665555432 236778888888766543
No 445
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.71 E-value=0.094 Score=51.42 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||.--. |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 344445556677999999866 554444444444321 2256688888887665443
No 446
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.71 E-value=0.091 Score=47.61 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
+...+..++-+++||+--. |......+...+..-..+..||++|.+.....
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3344445677999999866 55555555544443222367888888887654
No 447
>PRK04040 adenylate kinase; Provisional
Probab=95.70 E-value=0.0085 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 448
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.69 E-value=0.16 Score=53.82 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
..-.|...|-.++=+|+||.--+ |...-..|...+..-. + .||++|.+......+
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~ 219 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHh
Confidence 33445555566778999999866 5554455555554332 4 588888888766554
No 449
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.12 Score=47.82 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
..-.+.+.+..++-+++||+.-. |...-..+...+.....+..||++|.+.+....
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 33445555666778899999866 444434444443322225678888888775544
No 450
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.11 Score=48.75 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.+...+-.++-++++|..-. |...-..+...+..- ..|..||++|.+......
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34444555677899999866 555555555444331 236678888888875544
No 451
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.68 E-value=0.051 Score=49.02 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999976
No 452
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.15 Score=48.48 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
-.|...|..++-+|+||.-.. |...-..+...+.. ...|..||++|.+.+.+...
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~ 211 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY 211 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 344555556778999999876 54443444433332 12477788888887765443
No 453
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.68 E-value=0.043 Score=47.38 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=30.9
Q ss_pred CceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 291 NKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
+++-++++|+.-. |+..-..+...+... ..++.+|+||.+.+.....
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~ 147 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA 147 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh
Confidence 3788999999877 444434443333221 1267899999999887654
No 454
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.67 E-value=0.012 Score=59.44 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=36.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||++.++.+...+..+. -+.|.|++|+|||+||+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 458999999999998887643 467899999999999999987
No 455
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.67 E-value=0.072 Score=54.23 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=36.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..++|....+.++.+.+..-......+.|.|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 56889888888877777542233456789999999999999999873
No 456
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.67 E-value=0.2 Score=49.25 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
-++|+++|+.|+|||| ||+..+.-.. ...=..+..|+... .....+-++...+-++.+-. ...+..++...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHHH
Confidence 6899999999999996 6665544111 11123455555432 22334444455554544321 0114444444433
Q ss_pred HHcCCceEEEEEeCCCC---CchhHHHHHhhCCC
Q 015752 287 DYLTNKKYFIVLDDVFD---DSEIWIDVEELLPD 317 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~---~~~~~~~l~~~l~~ 317 (401)
.+ +.+ =+|.+|-.-. |.....++..++..
T Consensus 278 ~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 278 AL-RDC-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred Hh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 32 222 4555566544 34444555555443
No 457
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.67 E-value=0.1 Score=55.47 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 6789999888888887764222333477999999999999999987
No 458
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.64 E-value=0.012 Score=51.87 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV 247 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 247 (401)
.+++.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46888999999999999999998 66677766666553
No 459
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.076 Score=52.04 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---ccC------------------eEEEEEcCCC------CCHH--------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD------------------CHAWVRVSLD------YDFR-------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------------~~~wv~vs~~------~~~~-------- 254 (401)
.+++|+|+.|+|||||.+.++.-..... .|+ .+.++ .+. .++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v--~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV--FQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE--cCCcccCCCCcHHHHHHhhhh
Confidence 4899999999999999999975321100 011 11111 111 1111
Q ss_pred ----HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEE
Q 015752 255 ----RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRV 324 (401)
Q Consensus 255 ----~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~i 324 (401)
.-..++++.++........... .-+...-.|.+.|..++-+++||.--. |...-..+...+..- ..|..|
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 1233455555543211111222 222333345555566777999999866 554444444443321 225668
Q ss_pred EEecCChhHHhhc
Q 015752 325 FITVTDPDLLASL 337 (401)
Q Consensus 325 ivTTR~~~v~~~~ 337 (401)
|++|.+...+..+
T Consensus 183 i~vTHd~~~~~~~ 195 (352)
T PRK11144 183 LYVSHSLDEILRL 195 (352)
T ss_pred EEEecCHHHHHHh
Confidence 8888887655443
No 460
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.64 E-value=0.016 Score=56.41 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.-.|.+.|..++-++++|.--+ |+..-..+...+..- ..|..||++|.+.++...+
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3445555667788999999866 554444444444432 2366788888888776554
No 461
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.64 E-value=0.027 Score=56.74 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc-ccc-Cc------CHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-VII-GE------DYQL 280 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-~~~-~~------~~~~ 280 (401)
.-++|.|.+|+|||||+..+.+.... ++-+.++++-+++... +.+++.++...-....... ... +. ....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 45789999999999999888764322 2457788888877654 4556666654322111100 000 10 1122
Q ss_pred HHHHHHHHc---CCceEEEEEeCC
Q 015752 281 KKSILRDYL---TNKKYFIVLDDV 301 (401)
Q Consensus 281 l~~~l~~~L---~~kr~LlVlDdv 301 (401)
..-.+.+++ +|+++||++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 334455565 389999999998
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.1 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++++|+.|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 36999999999999998888876
No 463
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.63 E-value=0.0091 Score=51.76 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999987
No 464
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.63 E-value=0.075 Score=51.55 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=18.3
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
+++.|++|+||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999986
No 465
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.63 E-value=0.13 Score=53.20 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=35.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|....+.++++.+..-...-.-|.|+|..|+||+++|+.+.+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 7899999888888877753112233477999999999999999865
No 466
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.63 E-value=0.13 Score=51.81 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
--|.+.|=|.++|+|||.-.. |.+-=..|..++.. ...|+-+|+.|..+++...+
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 345666779999999998755 32211334443332 23456666666667776554
No 467
>PRK14526 adenylate kinase; Provisional
Probab=95.63 E-value=0.095 Score=47.42 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=18.3
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
|.|+|++|+||||+++.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999876
No 468
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.62 E-value=0.14 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|+|..|+|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998864
No 469
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.62 E-value=0.14 Score=47.27 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-+++||+.-. |...-+.+...+.. ...|..||++|.+......
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 334455556678899999866 54433444333221 1235678889998776654
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.62 E-value=0.043 Score=55.00 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC-------CCCCccccCc-CHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP-------PSRVSVIIGE-DYQLK 281 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~-~~~~l 281 (401)
..++|+|..|+|||||++.+.... .....+++..-...-++..+....+..... ...+. .... -....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~-~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDES-PMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCC-HHHHHHHHHH
Confidence 478999999999999999887622 122344444332333444444444433211 00000 0000 11122
Q ss_pred HHHHHHHc--CCceEEEEEeCCC
Q 015752 282 KSILRDYL--TNKKYFIVLDDVF 302 (401)
Q Consensus 282 ~~~l~~~L--~~kr~LlVlDdv~ 302 (401)
.-.+.+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22334444 5899999999984
No 471
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.62 E-value=0.027 Score=55.17 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.|.+.|..++=+++||.--. |...-..+...+..- ..|..+|++|.+...+..+
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 345555666778999999866 555545555444331 2366788888888766554
No 472
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.60 E-value=0.042 Score=46.68 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=16.9
Q ss_pred EEcCCCCchHHHHHHhhc
Q 015752 214 ILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 214 I~G~gGiGKTtLa~~v~~ 231 (401)
|.|+||+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999987
No 473
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.60 E-value=0.12 Score=53.09 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=33.6
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.-.+...|..++-+++||.--. |...-..+...+.. ...|..||++|.+.+.....
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI 207 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3444555667788999999866 54443444332222 12366788888887655443
No 474
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.60 E-value=0.19 Score=46.73 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~ 336 (401)
-.+...+..++-+++||+.-. |...-..+...+.. ...|..||++|.+.+....
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~ 206 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVAR 206 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence 344555666778999999866 54433333333322 1235678888887766544
No 475
>PRK05973 replicative DNA helicase; Provisional
Probab=95.59 E-value=0.091 Score=48.33 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=74.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc-CHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE-DYQL 280 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~-~~~~ 280 (401)
.-.++.|.|.+|+|||+++.++..... ++ -..+++++...+ ..++...+. +++.+..+. ...+. ....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-KS-GRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-CCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence 346888999999999999998865322 22 245667766554 344444432 223221110 01111 2333
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC-C----chhHHH----HHhhCCCCCCCcEEEEecCChhHHhhchhCCCcceeccccc
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD-D----SEIWID----VEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVL 351 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~-~----~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~l~~~~ 351 (401)
+...+.+ ..+.-++|+|.+-. + ...... |..... ..|..||+|+....-...- ......+.+.+
T Consensus 138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak--~~gitvIl~sQl~r~~e~~---~~~~P~laDlR 210 (237)
T PRK05973 138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFAR--ERGLIIVFISQIDRSFDPS---AKPLPDIRDVR 210 (237)
T ss_pred HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHH--hCCCeEEEEecCccccccC---CCCCCChhhcC
Confidence 3333333 12345899999753 1 112222 222222 3577788887654433221 11111333333
Q ss_pred CCCCCCCChHHHHHHHHHhhCC
Q 015752 352 FGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 352 ~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
+++|+ =..||.+..+-
T Consensus 211 ~~~~~------d~~~f~~~~~~ 226 (237)
T PRK05973 211 LPNPL------DLSLFDKACFL 226 (237)
T ss_pred CCChh------hHHHhhhhhee
Confidence 33344 47888888763
No 476
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.019 Score=56.19 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.|.+.|..++=+++||.--. |......+...+..- ..|..+|++|.+..-+..+
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 345556666788899999866 555545555444321 2366788888888765443
No 477
>PRK05439 pantothenate kinase; Provisional
Probab=95.58 E-value=0.076 Score=50.85 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 206 SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 478
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.56 E-value=0.029 Score=52.79 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.|+|.||+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4788999999999999999876
No 479
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.1 Score=51.22 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=59.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI 273 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 273 (401)
...++-..|-.+--.-.+|.|-|-+|||||||..++.. ++...- .+.+|+-.+.. ..+ +--++.++.......-
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEE
Confidence 34556555544322346889999999999999999988 443333 66776654443 222 2334555543321111
Q ss_pred cCc-CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 274 IGE-DYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 274 ~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
... +.+++...+.+ .++-|+|+|.+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 222 44544444444 6889999999843
No 480
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.13 Score=52.73 Aligned_cols=53 Identities=6% Similarity=0.117 Sum_probs=32.5
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~ 336 (401)
.+...|..++-+++||.-.. |...-..+...+.. ...|..||++|.+.+....
T Consensus 144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34445556777999999876 55544555443332 1235668888888765544
No 481
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.55 E-value=0.017 Score=56.40 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=82.8
Q ss_pred ccccccccHHHHHHHHhcC---------------CCCceEEEEEcCCCCchHHHHHHhhcccCcc--ccc---CeEEEE-
Q 015752 187 DISHFERGREELFDLLIEG---------------SSGLSVVAILDSGGFDKTAFAADTYNNNHVK--FYF---DCHAWV- 245 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv- 245 (401)
+..|-..+...|.+..-.. -..-.+++|+|.+|.||||+.+.+..-.... ..| .+.+-+
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 3455566666666655321 1223478999999999999998886522111 111 011111
Q ss_pred ------Ec----CCCCCHHHHHHHHHHHcCC-------------CCCCc--cccCc--CHHHHHHHHHHHcCCceEEEEE
Q 015752 246 ------RV----SLDYDFRRILDDIIKSVIP-------------PSRVS--VIIGE--DYQLKKSILRDYLTNKKYFIVL 298 (401)
Q Consensus 246 ------~v----s~~~~~~~~~~~i~~~l~~-------------~~~~~--~~~~~--~~~~l~~~l~~~L~~kr~LlVl 298 (401)
.+ ...++-..++.++.+..+. .+--- ..+.. +.+.-...|.+.+..+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 01 1122323344444333322 10000 11222 3444556777888888889999
Q ss_pred eCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhchhCCCcce
Q 015752 299 DDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASLEMENGEKI 345 (401)
Q Consensus 299 Ddv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~~~~~~~~ 345 (401)
|.... |+-.--.+...+.+. ..|+.+++.|+.+++.... .++.+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL---~PD~l 579 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL---RPDTL 579 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc---CCcee
Confidence 98865 443333333333332 2577788888888888777 45544
No 482
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.13 Score=47.15 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.+...|..++-+++||+.-. |....+.+...+..-..+..||++|.+......+
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 203 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA 203 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 344445555667899999866 5555555554443322356788888887665433
No 483
>PRK04328 hypothetical protein; Provisional
Probab=95.54 E-value=0.046 Score=50.83 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=67.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC-------
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV------- 270 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------- 270 (401)
|-+.|..+=..-.++.|.|.+|+|||+|+.++.... . ..-..++|++...++ ..+. ..++.++.+...
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~--~~i~-~~~~~~g~d~~~~~~~~~l 86 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP--VQVR-RNMRQFGWDVRKYEEEGKF 86 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH--HHHH-HHHHHcCCCHHHHhhcCCE
Confidence 333343333345788999999999999998876521 2 224567888876643 2332 233333321000
Q ss_pred ---------------cc--cc-Cc-CHHHHHHHHHHHcCC-ceEEEEEeCCCC----Cch----hHHHHHhhCCCCCCCc
Q 015752 271 ---------------SV--II-GE-DYQLKKSILRDYLTN-KKYFIVLDDVFD----DSE----IWIDVEELLPDDENGS 322 (401)
Q Consensus 271 ---------------~~--~~-~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~----~~~----~~~~l~~~l~~~~~gs 322 (401)
.. .. .. +...+...+.+.++. +.-++|+|.+-. ++. ....+...+. ..|+
T Consensus 87 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk--~~g~ 164 (249)
T PRK04328 87 AIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS--GLGC 164 (249)
T ss_pred EEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH--hCCC
Confidence 00 00 11 455566666666543 445799999843 111 1122333332 4577
Q ss_pred EEEEecCC
Q 015752 323 RVFITVTD 330 (401)
Q Consensus 323 ~iivTTR~ 330 (401)
.+|+|+..
T Consensus 165 t~llt~e~ 172 (249)
T PRK04328 165 TAIFVSQV 172 (249)
T ss_pred EEEEEECc
Confidence 78888643
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.54 E-value=0.01 Score=52.05 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|.|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 485
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.53 E-value=0.022 Score=51.64 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=50.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC-CHHHHHHHHHHHcCCCCCCc--cccCc----------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY-DFRRILDDIIKSVIPPSRVS--VIIGE---------- 276 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~---------- 276 (401)
.-++|.|.+|+|||+|+..+.++.. -+..+++.+++.. .+.++.+++...-....... ...++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3577999999999999999987432 2344777787764 44555555533211110000 00010
Q ss_pred CHHHHHHHHHHHcCCceEEEEEeCC
Q 015752 277 DYQLKKSILRDYLTNKKYFIVLDDV 301 (401)
Q Consensus 277 ~~~~l~~~l~~~L~~kr~LlVlDdv 301 (401)
..-..++.++. +|+++|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 01122333333 699999999997
No 486
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.14 Score=48.56 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
..-.+...|..++-+++||.... |...-..+...+..- ..|..||++|.+.+....
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~ 211 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR 211 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 33445555667778999999876 554444454444321 246788888888765443
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.53 E-value=0.0082 Score=53.60 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|.+|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=95.51 E-value=0.05 Score=54.31 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC-CHHHHHHHHHHHcCCCCCCc--cccCc------CHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY-DFRRILDDIIKSVIPPSRVS--VIIGE------DYQL 280 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~------~~~~ 280 (401)
..++|+|..|+|||||+..+++... -+.++...+.... ++..+..+............ ...+. ....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 4689999999999999999987322 2333334444433 45555555555332211000 00010 1112
Q ss_pred HHHHHHHHc--CCceEEEEEeCCCC
Q 015752 281 KKSILRDYL--TNKKYFIVLDDVFD 303 (401)
Q Consensus 281 l~~~l~~~L--~~kr~LlVlDdv~~ 303 (401)
..-.+.+++ +||++||++||+-.
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 233344444 58999999999843
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.046 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+|+|+|.+|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988875
No 490
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.51 E-value=0.055 Score=50.75 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=67.3
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC
Q 015752 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS 268 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 268 (401)
.|...+..+.+..+... .-.++.|.|..|+||||++..+.+ .+...-..+ +++..+.... +.. ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~--~i~~~~~~i--itiEdp~E~~--~~~-~~q~~v~~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALS--ELNTPEKNI--ITVEDPVEYQ--IPG-INQVQVNE 132 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeE--EEECCCceec--CCC-ceEEEeCC
Confidence 34444444444444432 235789999999999999998865 222211122 2333322110 000 01111110
Q ss_pred CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.........++..|+..+=.|+++++.+ .+....+..+.. .|..++-|....++...+
T Consensus 133 -------~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa~---tGh~v~tTlHa~~~~~ai 190 (264)
T cd01129 133 -------KAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAAL---TGHLVLSTLHTNDAPGAI 190 (264)
T ss_pred -------cCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHHH---cCCcEEEEeccCCHHHHH
Confidence 0112345566777777888999999988 655444333322 244466666666555443
No 491
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.51 E-value=0.14 Score=47.61 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
.-.+...+..++-++++|+.-. |...-..+...+... ..|..||++|.+.......
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~ 215 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL 215 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3344455566778889999866 544444444433321 2366788888887766543
No 492
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.50 E-value=0.011 Score=63.81 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc---CHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSI 284 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~ 284 (401)
+..+++|+|+.|.|||||.+.+....-. .....+|....... ...+.++...++....-.+.... ....+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3468999999999999999988642000 00111111111000 00111111111111000001111 22233322
Q ss_pred HHHHcCCceEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 285 LRDYLTNKKYFIVLDDVFD--DSEIWIDV----EELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
+.. + +.+-|++||..-. |+.+-..+ ...+. ..|+.+|+||....+....
T Consensus 397 l~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 397 LSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALM 451 (771)
T ss_pred HHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 222 2 5789999999977 54444433 22332 2478899999998876544
No 493
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.49 E-value=0.11 Score=53.68 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|....+.++.+.+..-.....-|.|.|..|.||+.+|+.+++
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence 6799999999888888754223345678999999999999999986
No 494
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.48 E-value=0.037 Score=54.84 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=35.1
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG------------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.++.+..+...+... ....+-|.++|++|+|||+||+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45788888888776666531 11236788999999999999999987
No 495
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.48 E-value=0.19 Score=52.38 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.|...+-.++-+++||.-.+ |...-..+...+..-. + .||++|.+.+....+
T Consensus 172 v~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~ 226 (556)
T PRK11819 172 VALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNV 226 (556)
T ss_pred HHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhh
Confidence 334444556677999999876 6555555555544332 4 588888888766554
No 496
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.47 E-value=0.014 Score=53.24 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
...++.|.|+.|.||||+.+.+..-.-. +....+|.... ........++..++.........+ ....-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS-~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVS-TFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCccc--EEEeccceeEeeeccccchhcCcC-hHHHHHHHHHH
Confidence 4578999999999999998887531000 00001111111 000112223333332211100111 22222222333
Q ss_pred Hc--CCceEEEEEeCCC---C--Cch--hHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 288 YL--TNKKYFIVLDDVF---D--DSE--IWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 288 ~L--~~kr~LlVlDdv~---~--~~~--~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.+ ..++-|++||... + |.. .|.-+ ..+.. ..|+.+|+||...++...+
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHh
Confidence 33 3578899999993 3 221 22222 23322 2467899999987776654
No 497
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.091 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998753
No 498
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.14 Score=47.64 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...+..++-+++||+--. |....+.+...+..- ..|..||++|.+......
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~ 203 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASR 203 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 34445556778999999866 555555555544321 235678888888775443
No 499
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.18 Score=48.28 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.|...|..++-+|+||+.-. |......+...+..-..+..||++|.+......+
T Consensus 209 v~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~ 265 (305)
T PRK14264 209 LCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARI 265 (305)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 344445556778999999866 5555555544443322234588888888775543
No 500
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.46 E-value=0.025 Score=55.83 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.|.+.|..++=+++||+--. |......+...+..- ..|..||++|.+...+..+
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM 211 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344555556677999999866 555455555544431 2366788888887765443
Done!