Query 015752
Match_columns 401
No_of_seqs 240 out of 2222
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7E-30 2.4E-34 262.7 18.6 190 189-400 131-331 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 4.9E-25 1.7E-29 245.8 15.3 190 186-400 124-322 (1249)
3 1vt4_I APAF-1 related killer D 99.9 5.8E-23 2E-27 218.0 15.0 175 186-373 128-313 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.7E-22 5.9E-27 209.3 14.0 189 186-400 124-322 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 6.6E-15 2.3E-19 119.0 5.4 78 46-126 2-85 (115)
6 1w5s_A Origin recognition comp 99.4 4.7E-13 1.6E-17 131.7 12.1 173 186-371 22-228 (412)
7 2qen_A Walker-type ATPase; unk 99.4 2.1E-12 7.1E-17 124.0 12.9 189 186-400 12-240 (350)
8 2qby_B CDC6 homolog 3, cell di 99.3 1.5E-11 5E-16 119.9 13.8 172 186-371 20-210 (384)
9 2fna_A Conserved hypothetical 99.3 1.3E-11 4.4E-16 118.7 11.9 166 186-371 13-222 (357)
10 1njg_A DNA polymerase III subu 99.3 2.1E-11 7.2E-16 110.1 12.4 191 185-399 22-221 (250)
11 2v1u_A Cell division control p 99.3 2.8E-11 9.7E-16 117.7 13.5 172 186-371 19-214 (387)
12 1fnn_A CDC6P, cell division co 99.3 8.9E-11 3.1E-15 114.3 15.9 173 186-372 17-207 (389)
13 2qby_A CDC6 homolog 1, cell di 99.2 1.2E-11 4.3E-16 120.0 7.8 172 186-371 20-210 (386)
14 2chg_A Replication factor C sm 99.2 1.7E-10 6E-15 102.7 13.4 155 186-372 17-175 (226)
15 1sxj_B Activator 1 37 kDa subu 99.0 9.9E-10 3.4E-14 104.1 9.6 176 186-399 21-202 (323)
16 1iqp_A RFCS; clamp loader, ext 98.8 6.5E-09 2.2E-13 98.6 7.6 153 185-372 24-183 (327)
17 3te6_A Regulatory protein SIR3 98.8 9.5E-08 3.2E-12 90.5 14.0 172 187-372 21-212 (318)
18 2chq_A Replication factor C sm 98.7 1.1E-07 3.6E-12 89.8 11.5 153 186-372 17-175 (319)
19 1jr3_A DNA polymerase III subu 98.6 1.5E-07 5.1E-12 91.0 11.8 169 186-371 16-191 (373)
20 1hqc_A RUVB; extended AAA-ATPa 98.5 2.6E-07 8.8E-12 87.6 9.5 147 186-372 12-182 (324)
21 1jbk_A CLPB protein; beta barr 98.5 5.9E-08 2E-12 84.0 3.7 45 186-232 22-66 (195)
22 1sxj_D Activator 1 41 kDa subu 98.4 2.5E-07 8.6E-12 88.6 7.5 188 186-399 37-228 (353)
23 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.7E-11 81.1 11.6 155 186-373 17-203 (285)
24 3bos_A Putative DNA replicatio 98.4 1.5E-07 5.1E-12 84.8 4.3 143 186-372 28-188 (242)
25 3eie_A Vacuolar protein sortin 98.4 2.3E-06 8E-11 81.3 12.2 155 186-373 18-199 (322)
26 1xwi_A SKD1 protein; VPS4B, AA 98.4 1.3E-05 4.6E-10 76.1 17.4 156 186-373 12-194 (322)
27 3syl_A Protein CBBX; photosynt 98.4 6.8E-07 2.3E-11 84.1 7.9 158 187-372 32-218 (309)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.4 6.5E-06 2.2E-10 75.3 14.2 153 186-372 6-191 (262)
29 2z4s_A Chromosomal replication 98.3 9.2E-07 3.1E-11 87.9 8.9 153 186-371 105-276 (440)
30 3uk6_A RUVB-like 2; hexameric 98.3 8.2E-06 2.8E-10 78.6 13.4 170 186-372 44-273 (368)
31 3pfi_A Holliday junction ATP-d 98.3 3.5E-06 1.2E-10 80.3 10.6 146 186-372 29-198 (338)
32 2qp9_X Vacuolar protein sortin 98.3 8.3E-06 2.9E-10 78.6 13.3 155 186-373 51-232 (355)
33 3n70_A Transport activator; si 98.3 1.2E-06 4.1E-11 73.2 6.4 113 187-330 2-115 (145)
34 3u61_B DNA polymerase accessor 98.2 5.2E-06 1.8E-10 78.7 11.3 140 185-364 25-171 (324)
35 2zan_A Vacuolar protein sortin 98.2 1.3E-05 4.3E-10 79.7 14.4 156 186-373 134-316 (444)
36 3d8b_A Fidgetin-like protein 1 98.2 7.9E-06 2.7E-10 78.8 12.5 46 186-231 84-139 (357)
37 2p65_A Hypothetical protein PF 98.2 8.1E-07 2.8E-11 76.5 4.9 44 186-231 22-65 (187)
38 1sxj_A Activator 1 95 kDa subu 98.2 1.4E-06 4.9E-11 88.3 7.1 163 186-372 39-223 (516)
39 1sxj_E Activator 1 40 kDa subu 98.2 1.1E-05 3.9E-10 77.1 13.0 167 186-372 14-207 (354)
40 3vfd_A Spastin; ATPase, microt 98.2 2E-05 6.9E-10 76.8 14.6 46 186-231 115-170 (389)
41 3pvs_A Replication-associated 98.2 3.6E-06 1.2E-10 83.7 8.6 145 186-372 26-179 (447)
42 3ec2_A DNA replication protein 98.1 1.8E-06 6.2E-11 74.6 5.0 101 209-330 38-142 (180)
43 2w58_A DNAI, primosome compone 98.1 1.9E-06 6.5E-11 75.8 4.7 96 186-303 25-126 (202)
44 3co5_A Putative two-component 98.1 2.3E-06 7.9E-11 71.3 4.6 45 187-231 5-49 (143)
45 1d2n_A N-ethylmaleimide-sensit 98.1 5.3E-05 1.8E-09 69.8 13.9 153 186-369 33-210 (272)
46 3b9p_A CG5977-PA, isoform A; A 98.1 8.8E-05 3E-09 69.2 15.5 46 186-231 21-76 (297)
47 1a5t_A Delta prime, HOLB; zinc 98.1 7.8E-05 2.7E-09 71.1 15.1 142 193-371 9-180 (334)
48 1sxj_C Activator 1 40 kDa subu 98.0 4E-05 1.4E-09 73.2 12.7 152 186-371 25-182 (340)
49 3cf0_A Transitional endoplasmi 98.0 4.8E-05 1.7E-09 71.4 12.9 156 186-373 15-201 (301)
50 1l8q_A Chromosomal replication 98.0 2.2E-05 7.4E-10 74.5 10.1 153 186-372 11-180 (324)
51 2bjv_A PSP operon transcriptio 98.0 1E-05 3.5E-10 74.4 7.4 46 186-231 6-51 (265)
52 2gno_A DNA polymerase III, gam 98.0 3.6E-05 1.2E-09 72.5 10.6 147 191-371 2-152 (305)
53 3hu3_A Transitional endoplasmi 97.9 4.8E-05 1.6E-09 76.4 11.5 157 186-374 204-388 (489)
54 4fcw_A Chaperone protein CLPB; 97.9 1.6E-05 5.6E-10 74.5 6.8 134 186-330 17-169 (311)
55 4b4t_J 26S protease regulatory 97.9 0.00013 4.4E-09 70.9 13.2 156 186-374 148-335 (405)
56 1lv7_A FTSH; alpha/beta domain 97.8 0.00024 8.2E-09 64.8 13.1 46 186-231 12-67 (257)
57 3pxg_A Negative regulator of g 97.8 5.9E-05 2E-09 75.4 9.7 44 186-231 180-223 (468)
58 4b4t_L 26S protease subunit RP 97.8 0.00026 9E-09 69.7 14.1 155 186-373 181-367 (437)
59 1ojl_A Transcriptional regulat 97.8 2.9E-05 9.9E-10 73.1 6.6 45 187-231 3-47 (304)
60 4b4t_H 26S protease regulatory 97.7 0.00034 1.2E-08 69.0 13.8 158 186-376 209-398 (467)
61 2ce7_A Cell division protein F 97.7 0.00042 1.4E-08 69.1 14.0 156 186-373 16-201 (476)
62 1qvr_A CLPB protein; coiled co 97.7 9.3E-05 3.2E-09 79.5 9.9 44 186-231 170-213 (854)
63 1ofh_A ATP-dependent HSL prote 97.6 8.3E-05 2.8E-09 69.4 7.0 46 186-231 15-72 (310)
64 2cvh_A DNA repair and recombin 97.6 0.00027 9.4E-09 62.4 9.8 89 209-303 20-116 (220)
65 2r62_A Cell division protease 97.6 4.8E-05 1.6E-09 69.8 4.6 46 186-231 11-66 (268)
66 4b4t_M 26S protease regulatory 97.6 0.00038 1.3E-08 68.5 11.0 46 186-231 181-237 (434)
67 3pxi_A Negative regulator of g 97.6 0.00027 9.1E-09 75.0 10.7 153 186-371 491-675 (758)
68 1in4_A RUVB, holliday junction 97.5 0.00062 2.1E-08 64.7 11.8 46 186-231 25-73 (334)
69 1r6b_X CLPA protein; AAA+, N-t 97.5 0.0012 4E-08 69.9 14.9 44 186-231 186-229 (758)
70 4b4t_I 26S protease regulatory 97.5 0.001 3.4E-08 65.0 12.5 46 186-231 182-238 (437)
71 3pxi_A Negative regulator of g 97.4 0.00065 2.2E-08 71.9 11.1 44 186-231 180-223 (758)
72 2kjq_A DNAA-related protein; s 97.3 0.0001 3.4E-09 61.8 3.4 25 208-232 35-59 (149)
73 3cf2_A TER ATPase, transitiona 97.3 0.0015 5.3E-08 68.9 13.0 156 186-373 204-387 (806)
74 1ixz_A ATP-dependent metallopr 97.3 0.0075 2.6E-07 54.5 16.0 46 186-231 16-71 (254)
75 2x8a_A Nuclear valosin-contain 97.3 0.0036 1.2E-07 57.8 13.8 45 186-231 10-66 (274)
76 2qgz_A Helicase loader, putati 97.3 6E-05 2.1E-09 71.1 1.6 60 186-247 124-189 (308)
77 2r44_A Uncharacterized protein 97.2 0.0013 4.3E-08 62.3 10.2 153 186-373 27-200 (331)
78 1qvr_A CLPB protein; coiled co 97.2 0.0012 4.3E-08 70.7 10.5 133 186-330 558-710 (854)
79 1ypw_A Transitional endoplasmi 97.1 0.0027 9.1E-08 67.7 12.2 46 186-231 204-260 (806)
80 3t15_A Ribulose bisphosphate c 97.1 0.00095 3.3E-08 62.2 7.8 25 207-231 34-58 (293)
81 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00026 8.9E-09 66.6 3.6 68 210-303 124-193 (331)
82 4b4t_K 26S protease regulatory 97.0 0.0015 5.1E-08 64.1 8.6 46 186-231 172-228 (428)
83 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0018 6E-08 68.6 9.7 46 186-231 458-510 (758)
84 3hr8_A Protein RECA; alpha and 97.0 0.0016 5.3E-08 62.5 8.3 89 208-303 60-150 (356)
85 3m6a_A ATP-dependent protease 97.0 0.0011 3.9E-08 67.3 7.4 46 186-231 81-130 (543)
86 1um8_A ATP-dependent CLP prote 96.9 0.0035 1.2E-07 60.4 10.2 46 186-231 21-94 (376)
87 4gp7_A Metallophosphoesterase; 96.9 0.00092 3.1E-08 57.0 5.4 55 283-337 92-165 (171)
88 1iy2_A ATP-dependent metallopr 96.9 0.011 3.8E-07 54.3 13.0 46 186-231 40-95 (278)
89 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0027 9.1E-08 56.2 7.9 117 210-331 24-168 (235)
90 2dhr_A FTSH; AAA+ protein, hex 96.8 0.012 4.1E-07 58.9 13.2 46 186-231 31-86 (499)
91 3io5_A Recombination and repai 96.8 0.0053 1.8E-07 57.6 9.8 86 211-303 30-122 (333)
92 1xp8_A RECA protein, recombina 96.8 0.0035 1.2E-07 60.3 8.8 88 209-303 74-163 (366)
93 2pcj_A ABC transporter, lipopr 96.8 0.011 3.9E-07 52.6 11.3 125 210-334 31-203 (224)
94 2c9o_A RUVB-like 1; hexameric 96.7 0.0026 8.9E-08 63.1 7.6 47 186-232 37-86 (456)
95 2pjz_A Hypothetical protein ST 96.7 0.0058 2E-07 56.0 9.4 124 210-337 31-191 (263)
96 2zr9_A Protein RECA, recombina 96.7 0.0038 1.3E-07 59.7 8.3 89 208-303 60-150 (349)
97 2b8t_A Thymidine kinase; deoxy 96.7 0.00079 2.7E-08 60.2 3.1 111 209-329 12-124 (223)
98 1vpl_A ABC transporter, ATP-bi 96.7 0.0095 3.2E-07 54.3 10.3 128 210-337 42-212 (256)
99 1sgw_A Putative ABC transporte 96.7 0.0053 1.8E-07 54.4 8.4 124 210-334 36-196 (214)
100 1ye8_A Protein THEP1, hypothet 96.6 0.016 5.5E-07 49.7 11.1 22 211-232 2-23 (178)
101 2z43_A DNA repair and recombin 96.6 0.0048 1.6E-07 58.3 8.4 94 209-303 107-214 (324)
102 1n0w_A DNA repair protein RAD5 96.6 0.0067 2.3E-07 54.1 9.0 94 209-303 24-130 (243)
103 2pze_A Cystic fibrosis transme 96.6 0.027 9.2E-07 50.3 12.8 54 284-337 140-196 (229)
104 2cbz_A Multidrug resistance-as 96.6 0.011 3.8E-07 53.1 10.3 52 284-335 137-193 (237)
105 1v5w_A DMC1, meiotic recombina 96.6 0.011 3.6E-07 56.4 10.5 96 207-303 120-230 (343)
106 2onk_A Molybdate/tungstate ABC 96.6 0.0058 2E-07 55.2 8.0 127 210-336 25-192 (240)
107 4g1u_C Hemin import ATP-bindin 96.5 0.014 4.9E-07 53.4 10.6 128 210-337 38-214 (266)
108 2nq2_C Hypothetical ABC transp 96.5 0.011 3.7E-07 53.9 9.5 127 210-336 32-194 (253)
109 3tif_A Uncharacterized ABC tra 96.5 0.013 4.6E-07 52.6 10.0 53 283-335 154-210 (235)
110 1u94_A RECA protein, recombina 96.5 0.0053 1.8E-07 58.8 7.8 89 208-303 62-152 (356)
111 2qi9_C Vitamin B12 import ATP- 96.5 0.009 3.1E-07 54.3 8.9 22 210-231 27-48 (249)
112 2olj_A Amino acid ABC transpor 96.5 0.017 5.9E-07 52.8 10.8 54 284-337 169-225 (263)
113 2i1q_A DNA repair and recombin 96.5 0.0075 2.6E-07 56.8 8.5 95 208-303 97-215 (322)
114 1rz3_A Hypothetical protein rb 96.4 0.0027 9.4E-08 55.5 4.8 41 191-231 3-44 (201)
115 3c8u_A Fructokinase; YP_612366 96.4 0.0021 7.2E-08 56.5 4.0 38 194-231 7-44 (208)
116 2zu0_C Probable ATP-dependent 96.4 0.038 1.3E-06 50.5 12.6 53 284-336 174-229 (267)
117 2ixe_A Antigen peptide transpo 96.3 0.021 7.3E-07 52.4 10.3 53 284-336 166-222 (271)
118 2yz2_A Putative ABC transporte 96.3 0.015 5E-07 53.3 9.0 54 283-336 147-203 (266)
119 3gfo_A Cobalt import ATP-bindi 96.3 0.011 3.9E-07 54.4 8.2 55 282-336 151-209 (275)
120 3bh0_A DNAB-like replicative h 96.3 0.031 1.1E-06 52.5 11.4 52 208-263 67-118 (315)
121 1g5t_A COB(I)alamin adenosyltr 96.2 0.0075 2.6E-07 52.5 6.2 120 210-332 29-164 (196)
122 3lw7_A Adenylate kinase relate 96.2 0.0023 8E-08 53.8 3.0 111 210-337 2-119 (179)
123 3tui_C Methionine import ATP-b 96.2 0.022 7.6E-07 54.6 10.1 128 210-337 55-230 (366)
124 3sr0_A Adenylate kinase; phosp 96.2 0.014 4.8E-07 51.3 8.1 79 211-303 2-85 (206)
125 3d31_A Sulfate/molybdate ABC t 96.2 0.015 5.2E-07 55.4 8.8 128 210-337 27-194 (348)
126 3umf_A Adenylate kinase; rossm 96.2 0.026 9E-07 50.0 9.8 25 207-231 27-51 (217)
127 3jvv_A Twitching mobility prot 96.2 0.00093 3.2E-08 64.2 0.3 111 210-336 124-236 (356)
128 1z47_A CYSA, putative ABC-tran 96.2 0.016 5.4E-07 55.4 8.9 128 210-337 42-212 (355)
129 1qhx_A CPT, protein (chloramph 96.1 0.0025 8.4E-08 54.2 2.8 22 210-231 4-25 (178)
130 2px0_A Flagellar biosynthesis 96.1 0.065 2.2E-06 49.8 12.6 86 208-301 104-191 (296)
131 3kb2_A SPBC2 prophage-derived 96.1 0.0028 9.5E-08 53.4 2.9 22 210-231 2-23 (173)
132 2bbs_A Cystic fibrosis transme 96.1 0.055 1.9E-06 50.1 11.9 54 284-337 169-225 (290)
133 1jr3_D DNA polymerase III, del 96.0 0.044 1.5E-06 51.8 11.4 136 198-371 9-155 (343)
134 1pzn_A RAD51, DNA repair and r 96.0 0.025 8.7E-07 53.9 9.4 95 208-303 130-242 (349)
135 2it1_A 362AA long hypothetical 96.0 0.026 9E-07 54.0 9.5 128 210-337 30-200 (362)
136 1odf_A YGR205W, hypothetical 3 95.9 0.007 2.4E-07 56.3 5.2 27 205-231 27-53 (290)
137 1ly1_A Polynucleotide kinase; 95.9 0.004 1.4E-07 52.8 3.2 22 210-231 3-24 (181)
138 1zp6_A Hypothetical protein AT 95.9 0.0047 1.6E-07 53.1 3.7 23 209-231 9-31 (191)
139 3hws_A ATP-dependent CLP prote 95.9 0.0048 1.7E-07 59.1 4.1 45 187-231 16-73 (363)
140 3vaa_A Shikimate kinase, SK; s 95.9 0.0043 1.5E-07 54.1 3.1 23 209-231 25-47 (199)
141 2yyz_A Sugar ABC transporter, 95.8 0.029 1E-06 53.6 9.1 128 210-337 30-200 (359)
142 1v43_A Sugar-binding transport 95.8 0.029 1E-06 53.9 8.9 127 210-337 38-208 (372)
143 1nks_A Adenylate kinase; therm 95.8 0.0052 1.8E-07 52.7 3.2 22 210-231 2-23 (194)
144 3lda_A DNA repair protein RAD5 95.7 0.028 9.7E-07 54.6 8.7 94 209-303 178-284 (400)
145 2q6t_A DNAB replication FORK h 95.7 0.19 6.6E-06 49.3 15.0 62 198-263 190-251 (444)
146 1kag_A SKI, shikimate kinase I 95.7 0.004 1.4E-07 52.6 2.3 22 210-231 5-26 (173)
147 2rhm_A Putative kinase; P-loop 95.7 0.0061 2.1E-07 52.4 3.5 24 208-231 4-27 (193)
148 3rlf_A Maltose/maltodextrin im 95.7 0.029 1E-06 54.0 8.6 128 210-337 30-200 (381)
149 3kl4_A SRP54, signal recogniti 95.7 0.032 1.1E-06 54.7 8.9 24 208-231 96-119 (433)
150 1knq_A Gluconate kinase; ALFA/ 95.7 0.0074 2.5E-07 51.1 3.9 24 208-231 7-30 (175)
151 1kgd_A CASK, peripheral plasma 95.7 0.0053 1.8E-07 52.6 2.9 22 210-231 6-27 (180)
152 3tlx_A Adenylate kinase 2; str 95.7 0.0072 2.5E-07 54.6 3.9 38 194-231 14-51 (243)
153 3uie_A Adenylyl-sulfate kinase 95.7 0.0066 2.3E-07 52.9 3.5 24 208-231 24-47 (200)
154 3trf_A Shikimate kinase, SK; a 95.7 0.0054 1.9E-07 52.4 2.9 23 209-231 5-27 (185)
155 1vma_A Cell division protein F 95.6 0.021 7.1E-07 53.5 7.1 24 208-231 103-126 (306)
156 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.011 3.9E-07 59.1 5.4 42 186-231 22-63 (500)
157 1uj2_A Uridine-cytidine kinase 95.6 0.0068 2.3E-07 54.9 3.4 25 207-231 20-44 (252)
158 1kht_A Adenylate kinase; phosp 95.6 0.0062 2.1E-07 52.1 2.9 22 210-231 4-25 (192)
159 1oxx_K GLCV, glucose, ABC tran 95.5 0.043 1.5E-06 52.4 9.1 128 210-337 32-207 (353)
160 1ex7_A Guanylate kinase; subst 95.5 0.0053 1.8E-07 53.2 2.4 22 210-231 2-23 (186)
161 3t61_A Gluconokinase; PSI-biol 95.5 0.005 1.7E-07 53.6 2.3 23 209-231 18-40 (202)
162 1gvn_B Zeta; postsegregational 95.5 0.013 4.4E-07 54.3 5.2 24 208-231 32-55 (287)
163 3fvq_A Fe(3+) IONS import ATP- 95.5 0.0086 3E-07 57.3 4.0 128 210-337 31-205 (359)
164 1uf9_A TT1252 protein; P-loop, 95.5 0.0081 2.8E-07 52.0 3.5 25 207-231 6-30 (203)
165 3dm5_A SRP54, signal recogniti 95.5 0.045 1.5E-06 53.8 9.1 24 208-231 99-122 (443)
166 1ukz_A Uridylate kinase; trans 95.5 0.0087 3E-07 52.0 3.7 25 207-231 13-37 (203)
167 1g8p_A Magnesium-chelatase 38 95.5 0.0072 2.4E-07 57.2 3.3 45 186-232 24-68 (350)
168 2jaq_A Deoxyguanosine kinase; 95.5 0.0069 2.4E-07 52.4 2.9 21 211-231 2-22 (205)
169 2plr_A DTMP kinase, probable t 95.4 0.018 6E-07 50.1 5.6 22 210-231 5-26 (213)
170 2c95_A Adenylate kinase 1; tra 95.4 0.0079 2.7E-07 51.8 3.2 23 209-231 9-31 (196)
171 1tev_A UMP-CMP kinase; ploop, 95.4 0.0081 2.8E-07 51.5 3.3 23 209-231 3-25 (196)
172 4eun_A Thermoresistant glucoki 95.4 0.0077 2.6E-07 52.4 3.1 24 208-231 28-51 (200)
173 1zuh_A Shikimate kinase; alpha 95.4 0.0077 2.6E-07 50.7 2.9 24 208-231 6-29 (168)
174 3tr0_A Guanylate kinase, GMP k 95.4 0.008 2.7E-07 52.2 3.1 22 210-231 8-29 (205)
175 3iij_A Coilin-interacting nucl 95.4 0.007 2.4E-07 51.6 2.6 23 209-231 11-33 (180)
176 2bdt_A BH3686; alpha-beta prot 95.4 0.0091 3.1E-07 51.3 3.4 22 210-231 3-24 (189)
177 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0089 3E-07 54.5 3.4 23 209-231 4-26 (260)
178 2qt1_A Nicotinamide riboside k 95.3 0.01 3.5E-07 51.8 3.7 24 208-231 20-43 (207)
179 3ozx_A RNAse L inhibitor; ATP 95.3 0.048 1.7E-06 55.1 9.1 23 209-231 25-47 (538)
180 3tau_A Guanylate kinase, GMP k 95.3 0.0092 3.1E-07 52.4 3.3 23 209-231 8-30 (208)
181 2ze6_A Isopentenyl transferase 95.3 0.0087 3E-07 54.4 3.2 22 210-231 2-23 (253)
182 2if2_A Dephospho-COA kinase; a 95.3 0.0082 2.8E-07 52.2 3.0 22 210-231 2-23 (204)
183 2qor_A Guanylate kinase; phosp 95.3 0.0076 2.6E-07 52.7 2.7 24 208-231 11-34 (204)
184 2j41_A Guanylate kinase; GMP, 95.3 0.0096 3.3E-07 51.7 3.3 23 209-231 6-28 (207)
185 3asz_A Uridine kinase; cytidin 95.3 0.01 3.6E-07 51.8 3.5 24 208-231 5-28 (211)
186 1y63_A LMAJ004144AAA protein; 95.3 0.0097 3.3E-07 51.1 3.2 24 208-231 9-32 (184)
187 3e70_C DPA, signal recognition 95.3 0.057 2E-06 51.0 8.9 25 207-231 127-151 (328)
188 1via_A Shikimate kinase; struc 95.3 0.0071 2.4E-07 51.3 2.3 22 210-231 5-26 (175)
189 3ice_A Transcription terminati 95.3 0.0072 2.4E-07 58.2 2.5 54 197-252 163-217 (422)
190 3cm0_A Adenylate kinase; ATP-b 95.3 0.0097 3.3E-07 50.8 3.2 23 209-231 4-26 (186)
191 2ga8_A Hypothetical 39.9 kDa p 95.3 0.015 5E-07 55.5 4.6 43 189-231 2-46 (359)
192 1g29_1 MALK, maltose transport 95.2 0.065 2.2E-06 51.5 9.2 55 283-337 148-206 (372)
193 2xxa_A Signal recognition part 95.2 0.09 3.1E-06 51.6 10.4 25 207-231 98-122 (433)
194 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.7E-07 51.6 3.4 22 210-231 3-24 (206)
195 1cke_A CK, MSSA, protein (cyti 95.2 0.0093 3.2E-07 52.7 3.0 22 210-231 6-27 (227)
196 2vli_A Antibiotic resistance p 95.2 0.0072 2.5E-07 51.4 2.2 23 209-231 5-27 (183)
197 3j16_B RLI1P; ribosome recycli 95.2 0.082 2.8E-06 54.2 10.3 23 209-231 103-125 (608)
198 4a1f_A DNAB helicase, replicat 95.2 0.06 2E-06 51.0 8.7 51 208-262 45-95 (338)
199 2iyv_A Shikimate kinase, SK; t 95.2 0.0072 2.5E-07 51.6 2.1 22 210-231 3-24 (184)
200 2cdn_A Adenylate kinase; phosp 95.2 0.011 3.8E-07 51.3 3.4 24 208-231 19-42 (201)
201 1j8m_F SRP54, signal recogniti 95.2 0.087 3E-06 49.0 9.7 23 209-231 98-120 (297)
202 2bwj_A Adenylate kinase 5; pho 95.2 0.0096 3.3E-07 51.3 2.9 23 209-231 12-34 (199)
203 1qf9_A UMP/CMP kinase, protein 95.2 0.011 3.8E-07 50.5 3.3 23 209-231 6-28 (194)
204 3bk7_A ABC transporter ATP-bin 95.1 0.083 2.8E-06 54.2 10.2 128 210-337 383-538 (607)
205 2yvu_A Probable adenylyl-sulfa 95.1 0.012 4.3E-07 50.3 3.5 24 208-231 12-35 (186)
206 1aky_A Adenylate kinase; ATP:A 95.1 0.011 3.6E-07 52.3 3.1 23 209-231 4-26 (220)
207 3a00_A Guanylate kinase, GMP k 95.1 0.0085 2.9E-07 51.5 2.4 22 210-231 2-23 (186)
208 2p5t_B PEZT; postsegregational 95.1 0.014 4.8E-07 52.9 4.0 37 195-231 15-54 (253)
209 3fwy_A Light-independent proto 95.1 0.012 4E-07 55.4 3.6 25 207-231 46-70 (314)
210 3tqc_A Pantothenate kinase; bi 95.1 0.016 5.5E-07 54.6 4.4 43 189-231 70-114 (321)
211 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.8E-07 53.2 3.2 23 209-231 27-49 (246)
212 2pt5_A Shikimate kinase, SK; a 95.1 0.011 3.7E-07 49.6 2.9 21 211-231 2-22 (168)
213 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.6E-07 50.8 3.0 21 211-231 2-22 (195)
214 1e6c_A Shikimate kinase; phosp 95.1 0.0087 3E-07 50.4 2.3 22 210-231 3-24 (173)
215 3j16_B RLI1P; ribosome recycli 95.1 0.081 2.8E-06 54.3 9.9 128 210-337 379-534 (608)
216 2z0h_A DTMP kinase, thymidylat 95.1 0.025 8.4E-07 48.6 5.2 21 211-231 2-22 (197)
217 1nn5_A Similar to deoxythymidy 95.0 0.013 4.5E-07 51.1 3.3 23 209-231 9-31 (215)
218 1yqt_A RNAse L inhibitor; ATP- 95.0 0.058 2E-06 54.6 8.4 128 210-337 313-468 (538)
219 1xjc_A MOBB protein homolog; s 95.0 0.013 4.4E-07 49.9 3.0 24 208-231 3-26 (169)
220 1zd8_A GTP:AMP phosphotransfer 94.9 0.012 4.2E-07 52.2 3.0 23 209-231 7-29 (227)
221 1lvg_A Guanylate kinase, GMP k 94.9 0.011 3.6E-07 51.6 2.5 22 210-231 5-26 (198)
222 1sky_E F1-ATPase, F1-ATP synth 94.9 0.045 1.5E-06 54.1 7.2 63 198-262 141-204 (473)
223 2ewv_A Twitching motility prot 94.9 0.052 1.8E-06 52.2 7.5 110 208-334 135-247 (372)
224 2wwf_A Thymidilate kinase, put 94.9 0.014 4.7E-07 51.0 3.1 23 209-231 10-32 (212)
225 2iw3_A Elongation factor 3A; a 94.9 0.081 2.8E-06 57.0 9.5 124 210-337 462-611 (986)
226 2hf9_A Probable hydrogenase ni 94.9 0.022 7.6E-07 50.1 4.4 26 207-232 36-61 (226)
227 3p32_A Probable GTPase RV1496/ 94.8 0.024 8E-07 54.2 4.8 37 195-231 65-101 (355)
228 1zak_A Adenylate kinase; ATP:A 94.8 0.013 4.3E-07 51.9 2.7 24 208-231 4-27 (222)
229 4a74_A DNA repair and recombin 94.8 0.046 1.6E-06 48.0 6.4 45 209-253 25-73 (231)
230 2v54_A DTMP kinase, thymidylat 94.8 0.017 5.7E-07 50.1 3.3 23 209-231 4-26 (204)
231 3cmu_A Protein RECA, recombina 94.7 0.06 2E-06 62.0 8.5 87 208-302 1426-1515(2050)
232 1znw_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 50.7 3.1 22 210-231 21-42 (207)
233 2grj_A Dephospho-COA kinase; T 94.7 0.017 5.8E-07 50.2 3.2 25 207-231 10-34 (192)
234 2pez_A Bifunctional 3'-phospho 94.7 0.019 6.3E-07 48.9 3.4 23 209-231 5-27 (179)
235 3aez_A Pantothenate kinase; tr 94.7 0.019 6.5E-07 53.9 3.7 25 207-231 88-112 (312)
236 2f6r_A COA synthase, bifunctio 94.7 0.02 6.7E-07 52.9 3.8 25 207-231 73-97 (281)
237 3ozx_A RNAse L inhibitor; ATP 94.7 0.062 2.1E-06 54.3 7.7 128 210-337 295-452 (538)
238 3ney_A 55 kDa erythrocyte memb 94.7 0.016 5.5E-07 50.6 2.9 23 209-231 19-41 (197)
239 2jeo_A Uridine-cytidine kinase 94.7 0.02 6.9E-07 51.5 3.7 24 208-231 24-47 (245)
240 2wsm_A Hydrogenase expression/ 94.7 0.021 7.1E-07 50.1 3.7 38 193-232 16-53 (221)
241 3fb4_A Adenylate kinase; psych 94.6 0.016 5.5E-07 50.8 2.9 21 211-231 2-22 (216)
242 1vht_A Dephospho-COA kinase; s 94.6 0.02 6.9E-07 50.3 3.6 23 209-231 4-26 (218)
243 1gtv_A TMK, thymidylate kinase 94.6 0.0085 2.9E-07 52.4 1.0 21 211-231 2-22 (214)
244 1q57_A DNA primase/helicase; d 94.6 0.2 6.9E-06 50.0 11.2 53 207-262 240-292 (503)
245 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.099 3.4E-06 49.4 8.4 110 210-337 172-281 (330)
246 4e22_A Cytidylate kinase; P-lo 94.6 0.018 6.1E-07 52.2 3.1 23 209-231 27-49 (252)
247 2ffh_A Protein (FFH); SRP54, s 94.6 0.083 2.8E-06 51.7 8.0 24 208-231 97-120 (425)
248 3bgw_A DNAB-like replicative h 94.6 0.15 5.1E-06 50.2 9.9 51 197-250 186-236 (444)
249 1m7g_A Adenylylsulfate kinase; 94.5 0.022 7.4E-07 49.9 3.5 24 208-231 24-47 (211)
250 3dl0_A Adenylate kinase; phosp 94.5 0.018 6.2E-07 50.5 2.9 21 211-231 2-22 (216)
251 1z6g_A Guanylate kinase; struc 94.5 0.016 5.3E-07 51.4 2.5 22 210-231 24-45 (218)
252 3be4_A Adenylate kinase; malar 94.5 0.016 5.4E-07 51.1 2.5 23 209-231 5-27 (217)
253 1htw_A HI0065; nucleotide-bind 94.4 0.024 8.2E-07 47.6 3.4 24 208-231 32-55 (158)
254 1rj9_A FTSY, signal recognitio 94.4 0.022 7.7E-07 53.2 3.4 24 208-231 101-124 (304)
255 1zu4_A FTSY; GTPase, signal re 94.4 0.045 1.5E-06 51.5 5.4 24 208-231 104-127 (320)
256 1fx0_B ATP synthase beta chain 94.3 0.13 4.4E-06 51.0 8.9 104 197-302 154-276 (498)
257 2ck3_D ATP synthase subunit be 94.3 0.13 4.4E-06 50.8 8.8 65 197-263 142-207 (482)
258 2ehv_A Hypothetical protein PH 94.3 0.022 7.7E-07 50.8 3.1 23 209-231 30-52 (251)
259 1s96_A Guanylate kinase, GMP k 94.3 0.022 7.6E-07 50.5 3.0 116 209-335 16-144 (219)
260 3hjn_A DTMP kinase, thymidylat 94.2 0.055 1.9E-06 47.1 5.4 89 211-302 2-91 (197)
261 1g41_A Heat shock protein HSLU 94.2 0.033 1.1E-06 54.8 4.3 46 186-231 15-72 (444)
262 4eaq_A DTMP kinase, thymidylat 94.2 0.05 1.7E-06 48.5 5.1 25 208-232 25-49 (229)
263 3ake_A Cytidylate kinase; CMP 94.2 0.025 8.5E-07 49.1 3.0 21 211-231 4-24 (208)
264 1yqt_A RNAse L inhibitor; ATP- 94.2 0.092 3.1E-06 53.1 7.6 80 258-337 140-224 (538)
265 3l0o_A Transcription terminati 94.1 0.14 4.7E-06 49.3 8.2 54 196-251 163-217 (427)
266 1e4v_A Adenylate kinase; trans 94.1 0.025 8.5E-07 49.6 2.9 21 211-231 2-22 (214)
267 2f1r_A Molybdopterin-guanine d 94.1 0.015 5.3E-07 49.5 1.5 22 210-231 3-24 (171)
268 1ak2_A Adenylate kinase isoenz 94.1 0.028 9.6E-07 50.1 3.3 23 209-231 16-38 (233)
269 2xb4_A Adenylate kinase; ATP-b 94.1 0.025 8.6E-07 50.1 2.9 21 211-231 2-22 (223)
270 3lnc_A Guanylate kinase, GMP k 94.0 0.018 6.1E-07 51.2 1.9 22 210-231 28-50 (231)
271 3b5x_A Lipid A export ATP-bind 94.0 0.29 1E-05 49.8 11.1 22 210-231 370-391 (582)
272 2i3b_A HCR-ntpase, human cance 94.0 0.024 8.2E-07 49.1 2.5 22 211-232 3-24 (189)
273 3cmw_A Protein RECA, recombina 94.0 0.078 2.7E-06 60.2 7.3 89 208-303 382-472 (1706)
274 3nwj_A ATSK2; P loop, shikimat 94.0 0.022 7.6E-07 51.6 2.4 22 210-231 49-70 (250)
275 1sq5_A Pantothenate kinase; P- 94.0 0.033 1.1E-06 52.0 3.7 25 207-231 78-102 (308)
276 3cmu_A Protein RECA, recombina 93.9 0.11 3.7E-06 60.0 8.3 103 194-303 367-472 (2050)
277 3b9q_A Chloroplast SRP recepto 93.9 0.033 1.1E-06 51.9 3.6 24 208-231 99-122 (302)
278 1np6_A Molybdopterin-guanine d 93.9 0.03 1E-06 47.8 3.0 23 209-231 6-28 (174)
279 2r6a_A DNAB helicase, replicat 93.9 0.17 6E-06 49.8 8.9 50 208-260 202-251 (454)
280 1ltq_A Polynucleotide kinase; 93.9 0.03 1E-06 51.8 3.2 22 210-231 3-24 (301)
281 3r20_A Cytidylate kinase; stru 93.8 0.03 1E-06 50.1 3.0 23 209-231 9-31 (233)
282 3bk7_A ABC transporter ATP-bin 93.8 0.23 7.8E-06 50.9 9.9 80 258-337 210-294 (607)
283 3cf2_A TER ATPase, transitiona 93.8 0.045 1.5E-06 57.8 4.7 94 186-303 477-581 (806)
284 1cr0_A DNA primase/helicase; R 93.8 0.082 2.8E-06 48.8 6.0 39 209-248 35-73 (296)
285 1ny5_A Transcriptional regulat 93.8 0.33 1.1E-05 46.8 10.4 44 187-231 138-182 (387)
286 2dr3_A UPF0273 protein PH0284; 93.8 0.042 1.4E-06 48.8 3.8 39 209-249 23-61 (247)
287 2wji_A Ferrous iron transport 93.7 0.051 1.7E-06 45.2 4.1 23 210-232 4-26 (165)
288 3b85_A Phosphate starvation-in 93.7 0.031 1E-06 49.2 2.8 22 210-231 23-44 (208)
289 3d3q_A TRNA delta(2)-isopenten 93.7 0.034 1.2E-06 52.7 3.2 22 210-231 8-29 (340)
290 3a8t_A Adenylate isopentenyltr 93.7 0.04 1.4E-06 52.1 3.7 23 209-231 40-62 (339)
291 3zvl_A Bifunctional polynucleo 93.7 0.036 1.2E-06 54.2 3.5 25 207-231 256-280 (416)
292 1yrb_A ATP(GTP)binding protein 93.7 0.043 1.5E-06 49.5 3.8 25 207-231 12-36 (262)
293 1a7j_A Phosphoribulokinase; tr 93.7 0.022 7.5E-07 52.9 1.9 24 208-231 4-27 (290)
294 1fzq_A ADP-ribosylation factor 93.7 0.049 1.7E-06 46.1 4.0 26 207-232 14-39 (181)
295 2zej_A Dardarin, leucine-rich 93.7 0.034 1.2E-06 47.3 2.9 22 211-232 4-25 (184)
296 3k1j_A LON protease, ATP-depen 93.6 0.066 2.3E-06 54.9 5.5 42 186-231 41-82 (604)
297 1b0u_A Histidine permease; ABC 93.6 0.036 1.2E-06 50.6 3.1 54 284-337 163-219 (262)
298 1ji0_A ABC transporter; ATP bi 93.5 0.039 1.3E-06 49.6 3.1 53 284-336 149-204 (240)
299 1svm_A Large T antigen; AAA+ f 93.5 0.059 2E-06 51.9 4.5 35 197-231 157-191 (377)
300 3crm_A TRNA delta(2)-isopenten 93.5 0.04 1.4E-06 51.8 3.2 22 210-231 6-27 (323)
301 1oix_A RAS-related protein RAB 93.5 0.04 1.4E-06 47.3 3.0 24 209-232 29-52 (191)
302 1g6h_A High-affinity branched- 93.4 0.041 1.4E-06 50.0 3.1 22 210-231 34-55 (257)
303 1q3t_A Cytidylate kinase; nucl 93.4 0.045 1.5E-06 48.8 3.3 25 207-231 14-38 (236)
304 2d2e_A SUFC protein; ABC-ATPas 93.4 0.042 1.4E-06 49.7 3.1 22 210-231 30-51 (250)
305 1tue_A Replication protein E1; 93.4 0.051 1.8E-06 47.6 3.5 36 195-231 45-80 (212)
306 1mv5_A LMRA, multidrug resista 93.4 0.045 1.5E-06 49.3 3.3 23 209-231 28-50 (243)
307 2og2_A Putative signal recogni 93.3 0.048 1.6E-06 52.2 3.6 24 208-231 156-179 (359)
308 2ff7_A Alpha-hemolysin translo 93.3 0.043 1.5E-06 49.6 3.1 22 210-231 36-57 (247)
309 2dyk_A GTP-binding protein; GT 93.3 0.05 1.7E-06 44.6 3.3 23 210-232 2-24 (161)
310 3llm_A ATP-dependent RNA helic 93.3 0.64 2.2E-05 41.1 10.9 105 194-303 65-187 (235)
311 2f9l_A RAB11B, member RAS onco 93.3 0.041 1.4E-06 47.4 2.8 24 209-232 5-28 (199)
312 3vr4_D V-type sodium ATPase su 93.2 0.054 1.9E-06 53.2 3.8 102 197-301 140-257 (465)
313 4edh_A DTMP kinase, thymidylat 93.2 0.12 4.1E-06 45.5 5.7 23 209-231 6-28 (213)
314 2vp4_A Deoxynucleoside kinase; 93.2 0.048 1.6E-06 48.5 3.2 24 208-231 19-42 (230)
315 3thx_A DNA mismatch repair pro 93.2 0.16 5.5E-06 54.6 7.7 47 290-337 739-791 (934)
316 2ghi_A Transport protein; mult 93.2 0.047 1.6E-06 49.8 3.1 22 210-231 47-68 (260)
317 3exa_A TRNA delta(2)-isopenten 93.2 0.052 1.8E-06 50.8 3.4 23 209-231 3-25 (322)
318 3e1s_A Exodeoxyribonuclease V, 93.1 0.16 5.3E-06 51.8 7.2 35 193-231 192-226 (574)
319 1u0j_A DNA replication protein 93.1 0.092 3.1E-06 47.9 4.9 36 196-231 91-126 (267)
320 3end_A Light-independent proto 93.1 0.055 1.9E-06 50.2 3.6 25 207-231 39-63 (307)
321 2eyu_A Twitching motility prot 93.0 0.054 1.8E-06 49.4 3.3 112 208-334 24-136 (261)
322 2wjg_A FEOB, ferrous iron tran 93.0 0.062 2.1E-06 45.5 3.5 24 209-232 7-30 (188)
323 2lkc_A Translation initiation 93.0 0.081 2.8E-06 44.1 4.2 25 208-232 7-31 (178)
324 2r9v_A ATP synthase subunit al 93.0 0.085 2.9E-06 52.4 4.9 101 197-302 164-277 (515)
325 2v3c_C SRP54, signal recogniti 93.0 0.058 2E-06 53.0 3.7 24 208-231 98-121 (432)
326 2ce2_X GTPase HRAS; signaling 93.0 0.049 1.7E-06 44.6 2.8 22 211-232 5-26 (166)
327 2ocp_A DGK, deoxyguanosine kin 93.0 0.058 2E-06 48.2 3.4 23 209-231 2-24 (241)
328 2ihy_A ABC transporter, ATP-bi 92.9 0.052 1.8E-06 50.0 3.1 22 210-231 48-69 (279)
329 3dzd_A Transcriptional regulat 92.9 0.083 2.8E-06 50.7 4.6 46 186-231 129-174 (368)
330 2nzj_A GTP-binding protein REM 92.9 0.053 1.8E-06 45.1 2.9 24 209-232 4-27 (175)
331 3foz_A TRNA delta(2)-isopenten 92.9 0.066 2.3E-06 50.0 3.7 24 208-231 9-32 (316)
332 2qm8_A GTPase/ATPase; G protei 92.9 0.098 3.4E-06 49.5 5.0 34 198-231 44-77 (337)
333 1z2a_A RAS-related protein RAB 92.9 0.052 1.8E-06 44.7 2.8 24 209-232 5-28 (168)
334 1nlf_A Regulatory protein REPA 92.9 0.054 1.9E-06 49.6 3.1 121 210-334 31-184 (279)
335 2qe7_A ATP synthase subunit al 92.9 0.084 2.9E-06 52.4 4.6 100 197-301 151-263 (502)
336 2v9p_A Replication protein E1; 92.8 0.055 1.9E-06 50.5 3.1 24 208-231 125-148 (305)
337 1p5z_B DCK, deoxycytidine kina 92.8 0.046 1.6E-06 49.6 2.5 24 208-231 23-46 (263)
338 1z08_A RAS-related protein RAB 92.8 0.07 2.4E-06 44.1 3.5 24 209-232 6-29 (170)
339 2p67_A LAO/AO transport system 92.8 0.1 3.5E-06 49.5 4.9 35 197-231 44-78 (341)
340 2afh_E Nitrogenase iron protei 92.7 0.065 2.2E-06 49.3 3.5 23 209-231 2-24 (289)
341 2yhs_A FTSY, cell division pro 92.7 0.066 2.2E-06 53.3 3.7 24 208-231 292-315 (503)
342 1nij_A Hypothetical protein YJ 92.7 0.061 2.1E-06 50.5 3.3 24 208-231 3-26 (318)
343 1fx0_A ATP synthase alpha chai 92.7 0.1 3.4E-06 51.9 4.9 86 211-302 165-265 (507)
344 3q72_A GTP-binding protein RAD 92.7 0.057 1.9E-06 44.5 2.8 21 211-231 4-24 (166)
345 3qf4_A ABC transporter, ATP-bi 92.7 0.32 1.1E-05 49.6 8.9 23 209-231 369-391 (587)
346 3oaa_A ATP synthase subunit al 92.7 0.21 7.2E-06 49.5 7.1 99 197-302 151-264 (513)
347 1u8z_A RAS-related protein RAL 92.6 0.063 2.2E-06 44.1 3.0 23 210-232 5-27 (168)
348 2j37_W Signal recognition part 92.6 0.1 3.5E-06 52.2 4.9 25 207-231 99-123 (504)
349 3con_A GTPase NRAS; structural 92.6 0.06 2E-06 45.7 2.8 23 210-232 22-44 (190)
350 2iw3_A Elongation factor 3A; a 92.6 0.32 1.1E-05 52.5 8.9 53 283-337 910-964 (986)
351 2erx_A GTP-binding protein DI- 92.5 0.064 2.2E-06 44.3 2.9 23 210-232 4-26 (172)
352 3sop_A Neuronal-specific septi 92.5 0.061 2.1E-06 49.3 2.9 21 211-231 4-24 (270)
353 1cp2_A CP2, nitrogenase iron p 92.5 0.071 2.4E-06 48.3 3.4 22 210-231 2-23 (269)
354 2gj8_A MNME, tRNA modification 92.5 0.066 2.3E-06 45.0 2.9 23 210-232 5-27 (172)
355 1ls1_A Signal recognition part 92.5 0.074 2.5E-06 49.4 3.5 24 208-231 97-120 (295)
356 2qmh_A HPR kinase/phosphorylas 92.4 0.076 2.6E-06 46.3 3.2 22 210-231 35-56 (205)
357 1c1y_A RAS-related protein RAP 92.4 0.065 2.2E-06 44.1 2.8 22 211-232 5-26 (167)
358 1ek0_A Protein (GTP-binding pr 92.4 0.071 2.4E-06 43.9 3.0 22 211-232 5-26 (170)
359 1ewq_A DNA mismatch repair pro 92.4 0.09 3.1E-06 55.4 4.3 45 290-336 653-703 (765)
360 1kao_A RAP2A; GTP-binding prot 92.4 0.066 2.3E-06 43.9 2.8 22 211-232 5-26 (167)
361 1z0j_A RAB-22, RAS-related pro 92.3 0.071 2.4E-06 44.0 2.9 23 210-232 7-29 (170)
362 2ged_A SR-beta, signal recogni 92.3 0.079 2.7E-06 45.0 3.3 25 208-232 47-71 (193)
363 3v9p_A DTMP kinase, thymidylat 92.3 0.11 3.8E-06 46.3 4.3 23 209-231 25-47 (227)
364 3q85_A GTP-binding protein REM 92.3 0.093 3.2E-06 43.3 3.5 22 210-231 3-24 (169)
365 1h65_A Chloroplast outer envel 92.3 0.15 5E-06 46.4 5.2 36 197-232 27-62 (270)
366 1ky3_A GTP-binding protein YPT 92.2 0.074 2.5E-06 44.4 2.9 25 208-232 7-31 (182)
367 1tq4_A IIGP1, interferon-induc 92.2 0.066 2.3E-06 52.2 2.9 24 208-231 68-91 (413)
368 1m7b_A RND3/RHOE small GTP-bin 92.2 0.07 2.4E-06 45.2 2.8 24 209-232 7-30 (184)
369 3thx_B DNA mismatch repair pro 92.2 0.2 6.7E-06 53.8 6.7 47 290-337 750-802 (918)
370 3cmw_A Protein RECA, recombina 92.2 0.22 7.4E-06 56.7 7.3 88 209-303 1431-1520(1706)
371 1r8s_A ADP-ribosylation factor 92.1 0.074 2.5E-06 43.7 2.8 21 212-232 3-23 (164)
372 1svi_A GTP-binding protein YSX 92.1 0.086 2.9E-06 44.8 3.3 25 208-232 22-46 (195)
373 3nh6_A ATP-binding cassette SU 92.1 0.057 1.9E-06 50.5 2.2 23 209-231 80-102 (306)
374 2yv5_A YJEQ protein; hydrolase 92.1 0.11 3.8E-06 48.3 4.2 32 194-230 155-186 (302)
375 1g16_A RAS-related protein SEC 92.1 0.08 2.7E-06 43.7 2.9 23 210-232 4-26 (170)
376 3ihw_A Centg3; RAS, centaurin, 92.1 0.075 2.6E-06 45.2 2.8 24 209-232 20-43 (184)
377 1nrj_B SR-beta, signal recogni 92.0 0.089 3E-06 45.8 3.3 25 208-232 11-35 (218)
378 3ux8_A Excinuclease ABC, A sub 92.0 0.36 1.2E-05 50.1 8.4 54 284-337 212-270 (670)
379 2axn_A 6-phosphofructo-2-kinas 92.0 0.086 2.9E-06 53.1 3.6 24 208-231 34-57 (520)
380 3def_A T7I23.11 protein; chlor 92.0 0.14 4.9E-06 46.3 4.8 37 196-232 23-59 (262)
381 3tw8_B RAS-related protein RAB 92.0 0.093 3.2E-06 43.8 3.3 25 208-232 8-32 (181)
382 3kkq_A RAS-related protein M-R 92.0 0.096 3.3E-06 44.0 3.4 25 208-232 17-41 (183)
383 2cxx_A Probable GTP-binding pr 92.0 0.078 2.7E-06 44.8 2.8 22 211-232 3-24 (190)
384 2hxs_A RAB-26, RAS-related pro 92.0 0.084 2.9E-06 44.0 3.0 24 209-232 6-29 (178)
385 1pui_A ENGB, probable GTP-bind 92.0 0.064 2.2E-06 46.4 2.3 24 209-232 26-49 (210)
386 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.078 2.7E-06 44.2 2.8 24 209-232 7-30 (177)
387 3mfy_A V-type ATP synthase alp 92.0 0.23 7.8E-06 49.9 6.4 58 197-259 216-274 (588)
388 1r2q_A RAS-related protein RAB 92.0 0.08 2.7E-06 43.6 2.8 23 210-232 7-29 (170)
389 4tmk_A Protein (thymidylate ki 92.0 0.17 5.9E-06 44.5 5.1 52 210-262 4-55 (213)
390 3t1o_A Gliding protein MGLA; G 91.9 0.079 2.7E-06 45.0 2.8 22 210-231 15-36 (198)
391 3cbq_A GTP-binding protein REM 91.9 0.075 2.6E-06 45.7 2.7 24 208-231 22-45 (195)
392 1g8f_A Sulfate adenylyltransfe 91.9 0.084 2.9E-06 52.8 3.4 43 189-231 375-417 (511)
393 3t5g_A GTP-binding protein RHE 91.9 0.099 3.4E-06 43.8 3.4 24 209-232 6-29 (181)
394 3lv8_A DTMP kinase, thymidylat 91.9 0.16 5.6E-06 45.4 4.9 52 209-261 27-78 (236)
395 4dsu_A GTPase KRAS, isoform 2B 91.9 0.099 3.4E-06 44.0 3.4 23 210-232 5-27 (189)
396 2www_A Methylmalonic aciduria 91.9 0.097 3.3E-06 49.8 3.6 24 208-231 73-96 (349)
397 3c5c_A RAS-like protein 12; GD 91.9 0.085 2.9E-06 44.9 2.9 24 209-232 21-44 (187)
398 3pqc_A Probable GTP-binding pr 91.9 0.11 3.7E-06 44.0 3.6 25 208-232 22-46 (195)
399 3kta_A Chromosome segregation 91.9 0.091 3.1E-06 44.5 3.1 21 211-231 28-48 (182)
400 1upt_A ARL1, ADP-ribosylation 91.9 0.089 3E-06 43.5 3.0 24 209-232 7-30 (171)
401 2r8r_A Sensor protein; KDPD, P 91.8 0.15 5.2E-06 45.3 4.5 107 211-331 8-127 (228)
402 1f6b_A SAR1; gtpases, N-termin 91.8 0.072 2.5E-06 45.9 2.4 34 198-232 15-48 (198)
403 1z0f_A RAB14, member RAS oncog 91.8 0.085 2.9E-06 43.9 2.8 25 209-233 15-39 (179)
404 2fn4_A P23, RAS-related protei 91.8 0.12 4.2E-06 43.0 3.8 25 208-232 8-32 (181)
405 2bme_A RAB4A, RAS-related prot 91.8 0.09 3.1E-06 44.3 2.9 24 209-232 10-33 (186)
406 2fz4_A DNA repair protein RAD2 91.7 0.6 2.1E-05 41.5 8.5 103 212-328 111-226 (237)
407 1m2o_B GTP-binding protein SAR 91.7 0.085 2.9E-06 45.1 2.8 23 210-232 24-46 (190)
408 2y8e_A RAB-protein 6, GH09086P 91.7 0.11 3.8E-06 43.1 3.5 23 210-232 15-37 (179)
409 2ck3_A ATP synthase subunit al 91.7 0.13 4.4E-06 51.2 4.3 105 197-302 151-272 (510)
410 2h92_A Cytidylate kinase; ross 91.7 0.076 2.6E-06 46.5 2.4 22 210-231 4-25 (219)
411 3eph_A TRNA isopentenyltransfe 91.6 0.092 3.1E-06 50.8 3.1 22 210-231 3-24 (409)
412 4f4c_A Multidrug resistance pr 91.6 0.96 3.3E-05 50.7 11.8 22 210-231 1106-1127(1321)
413 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.096 3.3E-06 44.0 3.0 23 210-232 6-28 (186)
414 3bc1_A RAS-related protein RAB 91.6 0.09 3.1E-06 44.4 2.8 24 209-232 11-34 (195)
415 2a9k_A RAS-related protein RAL 91.6 0.096 3.3E-06 43.9 3.0 24 209-232 18-41 (187)
416 3ld9_A DTMP kinase, thymidylat 91.5 0.18 6E-06 44.8 4.7 53 208-262 20-74 (223)
417 3tkl_A RAS-related protein RAB 91.5 0.12 4.2E-06 43.8 3.6 26 208-233 15-40 (196)
418 3gmt_A Adenylate kinase; ssgci 91.5 0.09 3.1E-06 46.9 2.8 22 210-231 9-30 (230)
419 2iwr_A Centaurin gamma 1; ANK 91.5 0.069 2.4E-06 44.7 1.9 23 210-232 8-30 (178)
420 2cjw_A GTP-binding protein GEM 91.5 0.097 3.3E-06 44.9 2.9 23 209-231 6-28 (192)
421 4hlc_A DTMP kinase, thymidylat 91.5 0.14 4.7E-06 44.8 3.9 50 210-262 3-52 (205)
422 2oil_A CATX-8, RAS-related pro 91.5 0.094 3.2E-06 44.6 2.8 24 209-232 25-48 (193)
423 3bwd_D RAC-like GTP-binding pr 91.5 0.1 3.5E-06 43.7 3.0 23 210-232 9-31 (182)
424 2efe_B Small GTP-binding prote 91.5 0.1 3.5E-06 43.6 2.9 23 210-232 13-35 (181)
425 2bov_A RAla, RAS-related prote 91.4 0.1 3.4E-06 44.8 3.0 25 208-232 13-37 (206)
426 1lw7_A Transcriptional regulat 91.4 0.097 3.3E-06 50.0 3.1 23 209-231 170-192 (365)
427 3gqb_B V-type ATP synthase bet 91.4 0.12 4.1E-06 50.7 3.7 103 198-301 137-260 (464)
428 1ksh_A ARF-like protein 2; sma 91.4 0.11 3.7E-06 43.8 3.1 26 208-233 17-42 (186)
429 3llu_A RAS-related GTP-binding 91.3 0.1 3.5E-06 44.7 2.9 23 209-231 20-42 (196)
430 2orw_A Thymidine kinase; TMTK, 91.3 0.11 3.6E-06 44.7 2.9 22 210-231 4-25 (184)
431 1vg8_A RAS-related protein RAB 91.3 0.13 4.4E-06 44.1 3.5 25 208-232 7-31 (207)
432 1u0l_A Probable GTPase ENGC; p 91.3 0.15 5.2E-06 47.3 4.2 33 194-231 159-191 (301)
433 2g6b_A RAS-related protein RAB 91.3 0.1 3.5E-06 43.6 2.8 24 209-232 10-33 (180)
434 2atv_A RERG, RAS-like estrogen 91.3 0.1 3.5E-06 44.6 2.8 24 209-232 28-51 (196)
435 2fg5_A RAB-22B, RAS-related pr 91.3 0.11 3.7E-06 44.3 2.9 24 209-232 23-46 (192)
436 2qu8_A Putative nucleolar GTP- 91.2 0.14 4.9E-06 45.0 3.8 25 208-232 28-52 (228)
437 2fh5_B SR-beta, signal recogni 91.2 0.13 4.3E-06 44.6 3.4 25 209-233 7-31 (214)
438 1moz_A ARL1, ADP-ribosylation 91.2 0.086 2.9E-06 44.3 2.2 24 208-231 17-40 (183)
439 1zbd_A Rabphilin-3A; G protein 91.2 0.11 3.8E-06 44.6 2.9 24 209-232 8-31 (203)
440 3upu_A ATP-dependent DNA helic 91.2 0.19 6.5E-06 49.6 5.0 21 211-231 47-67 (459)
441 4bas_A ADP-ribosylation factor 91.2 0.14 4.8E-06 43.6 3.6 27 207-233 15-41 (199)
442 1zj6_A ADP-ribosylation factor 91.2 0.24 8.1E-06 41.8 5.0 25 208-232 15-39 (187)
443 1bif_A 6-phosphofructo-2-kinas 91.2 0.12 4E-06 51.3 3.4 24 208-231 38-61 (469)
444 3fdi_A Uncharacterized protein 91.2 0.11 3.7E-06 45.3 2.8 22 210-231 7-28 (201)
445 3clv_A RAB5 protein, putative; 91.1 0.11 3.6E-06 44.2 2.8 24 209-232 7-30 (208)
446 1zd9_A ADP-ribosylation factor 91.1 0.14 4.7E-06 43.5 3.5 24 209-232 22-45 (188)
447 3f9v_A Minichromosome maintena 91.1 0.067 2.3E-06 54.8 1.7 21 211-231 329-349 (595)
448 2c61_A A-type ATP synthase non 91.1 0.087 3E-06 51.9 2.4 104 197-301 141-258 (469)
449 3oes_A GTPase rhebl1; small GT 91.1 0.11 3.7E-06 44.7 2.8 25 208-232 23-47 (201)
450 3ch4_B Pmkase, phosphomevalona 91.1 0.16 5.3E-06 44.3 3.7 24 208-231 10-33 (202)
451 2gf9_A RAS-related protein RAB 91.0 0.12 4E-06 43.9 3.0 24 209-232 22-45 (189)
452 3dz8_A RAS-related protein RAB 91.0 0.11 3.8E-06 44.2 2.8 23 210-232 24-46 (191)
453 1gwn_A RHO-related GTP-binding 91.0 0.11 3.7E-06 45.1 2.8 25 208-232 27-51 (205)
454 2q3h_A RAS homolog gene family 91.0 0.12 4E-06 44.3 2.9 24 209-232 20-43 (201)
455 2ew1_A RAS-related protein RAB 91.0 0.11 3.8E-06 44.9 2.8 25 208-232 25-49 (201)
456 2b6h_A ADP-ribosylation factor 91.0 0.11 3.9E-06 44.3 2.8 24 209-232 29-52 (192)
457 3reg_A RHO-like small GTPase; 90.9 0.12 4E-06 44.1 2.8 25 209-233 23-47 (194)
458 2gf0_A GTP-binding protein DI- 90.9 0.11 3.9E-06 44.1 2.7 24 209-232 8-31 (199)
459 2qnr_A Septin-2, protein NEDD5 90.9 0.1 3.4E-06 48.6 2.5 21 211-231 20-40 (301)
460 2o52_A RAS-related protein RAB 90.9 0.12 4.2E-06 44.4 2.9 24 209-232 25-48 (200)
461 1ega_A Protein (GTP-binding pr 90.8 0.13 4.6E-06 47.7 3.3 25 208-232 7-31 (301)
462 1z06_A RAS-related protein RAB 90.8 0.13 4.3E-06 43.7 2.9 24 209-232 20-43 (189)
463 1x3s_A RAS-related protein RAB 90.8 0.13 4.4E-06 43.6 3.0 23 210-232 16-38 (195)
464 4dzz_A Plasmid partitioning pr 90.8 0.2 6.7E-06 43.1 4.2 39 210-250 2-41 (206)
465 2il1_A RAB12; G-protein, GDP, 90.8 0.12 4.1E-06 44.1 2.8 23 210-232 27-49 (192)
466 2zts_A Putative uncharacterize 90.8 0.11 3.9E-06 46.0 2.7 49 209-260 30-78 (251)
467 2a5j_A RAS-related protein RAB 90.8 0.12 4.1E-06 43.9 2.8 24 209-232 21-44 (191)
468 2p5s_A RAS and EF-hand domain 90.8 0.13 4.4E-06 44.1 3.0 25 208-232 27-51 (199)
469 2g3y_A GTP-binding protein GEM 90.7 0.13 4.4E-06 45.2 2.9 23 209-231 37-59 (211)
470 2h57_A ADP-ribosylation factor 90.7 0.12 4E-06 43.9 2.6 25 209-233 21-45 (190)
471 3kjh_A CO dehydrogenase/acetyl 90.7 0.19 6.4E-06 44.6 4.0 20 212-231 3-22 (254)
472 2bcg_Y Protein YP2, GTP-bindin 90.7 0.13 4.5E-06 44.2 2.9 24 209-232 8-31 (206)
473 2j1l_A RHO-related GTP-binding 90.7 0.13 4.4E-06 44.8 2.9 24 209-232 34-57 (214)
474 3b1v_A Ferrous iron uptake tra 90.6 0.2 6.7E-06 45.9 4.2 24 209-232 3-26 (272)
475 1p9r_A General secretion pathw 90.6 0.25 8.4E-06 48.2 5.1 24 208-231 166-189 (418)
476 3k53_A Ferrous iron transport 90.6 0.16 5.4E-06 46.3 3.5 24 209-232 3-26 (271)
477 4dkx_A RAS-related protein RAB 90.5 0.13 4.6E-06 45.2 2.9 22 211-232 15-36 (216)
478 3cph_A RAS-related protein SEC 90.5 0.17 5.8E-06 43.6 3.5 24 209-232 20-43 (213)
479 3io3_A DEHA2D07832P; chaperone 90.5 0.26 9E-06 46.8 5.1 25 207-231 16-40 (348)
480 2gza_A Type IV secretion syste 90.5 0.11 3.9E-06 49.6 2.5 22 210-231 176-197 (361)
481 2h17_A ADP-ribosylation factor 90.4 0.12 4.2E-06 43.4 2.5 24 209-232 21-44 (181)
482 2x77_A ADP-ribosylation factor 90.4 0.24 8.3E-06 41.8 4.4 25 208-232 21-45 (189)
483 4gzl_A RAS-related C3 botulinu 90.4 0.19 6.6E-06 43.3 3.8 24 209-232 30-53 (204)
484 3gd7_A Fusion complex of cysti 90.4 0.14 4.8E-06 49.4 3.1 22 210-231 48-69 (390)
485 3lxx_A GTPase IMAP family memb 90.4 0.17 5.9E-06 44.9 3.5 25 208-232 28-52 (239)
486 1m8p_A Sulfate adenylyltransfe 90.3 0.16 5.6E-06 51.6 3.7 25 207-231 394-418 (573)
487 3cr8_A Sulfate adenylyltranfer 90.3 0.11 3.9E-06 52.5 2.4 23 209-231 369-391 (552)
488 1ypw_A Transitional endoplasmi 90.3 0.077 2.6E-06 56.4 1.2 46 186-231 477-533 (806)
489 2j0v_A RAC-like GTP-binding pr 90.3 0.15 5.1E-06 44.1 2.9 24 209-232 9-32 (212)
490 4f4c_A Multidrug resistance pr 90.2 1 3.6E-05 50.4 10.4 23 209-231 444-466 (1321)
491 2hup_A RAS-related protein RAB 90.2 0.15 5.1E-06 43.9 2.9 25 208-232 28-52 (201)
492 2fv8_A H6, RHO-related GTP-bin 90.2 0.14 4.8E-06 44.2 2.7 23 210-232 26-48 (207)
493 2atx_A Small GTP binding prote 90.2 0.14 4.9E-06 43.5 2.7 23 210-232 19-41 (194)
494 3iqw_A Tail-anchored protein t 90.2 0.31 1.1E-05 46.0 5.3 24 208-231 15-38 (334)
495 3iev_A GTP-binding protein ERA 90.2 0.17 5.6E-06 47.2 3.3 26 207-232 8-33 (308)
496 2gco_A H9, RHO-related GTP-bin 90.2 0.15 5.3E-06 43.7 2.9 23 210-232 26-48 (201)
497 3vr4_A V-type sodium ATPase ca 90.2 0.34 1.2E-05 48.8 5.7 50 197-251 221-270 (600)
498 2fu5_C RAS-related protein RAB 90.1 0.096 3.3E-06 44.0 1.5 24 209-232 8-31 (183)
499 4b3f_X DNA-binding protein smu 90.0 0.26 9E-06 50.9 5.0 48 211-262 207-255 (646)
500 2obl_A ESCN; ATPase, hydrolase 90.0 0.15 5.3E-06 48.4 3.0 23 210-232 72-94 (347)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=7e-30 Score=262.65 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=156.8
Q ss_pred ccccccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhc--ccCcccccCeEEEEEcCCCC--CHHHHHHHHHHH
Q 015752 189 SHFERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYN--NNHVKFYFDCHAWVRVSLDY--DFRRILDDIIKS 263 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 263 (401)
|||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999764 44689999999999999999999998 68899999999999999985 889999999999
Q ss_pred cCCCCC--CccccCc-CHHHHHHHHHHHcCCc-eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchh
Q 015752 264 VIPPSR--VSVIIGE-DYQLKKSILRDYLTNK-KYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEM 339 (401)
Q Consensus 264 l~~~~~--~~~~~~~-~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~ 339 (401)
++.... ....... +...+...+++.|+++ ||||||||||+ .+.+ .+.. .+||+||||||++.++..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~-- 281 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAA-- 281 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGC--
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHc--
Confidence 987532 1112333 6778899999999996 99999999999 6644 1211 1699999999999999877
Q ss_pred CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 340 ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 340 ~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
+....+ +|+ +| +++|||+||.+.++..+ .++.+++++++|+ +|+|.++
T Consensus 282 ~~~~~~~~l~------~L--~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 282 SQTCEFIEVT------SL--EIDECYDFLEAYGMPMP-----VGEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp CSCEEEEECC------CC--CHHHHHHHHHHTSCCCC-------CHHHHHHHHHHHHHTTCHH
T ss_pred CCCCeEEECC------CC--CHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHhCCChH
Confidence 224455 999 99 99999999999987532 1467899999999 9999764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=4.9e-25 Score=245.76 Aligned_cols=190 Identities=15% Similarity=0.215 Sum_probs=148.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-cccc-CeEEEEEcCCCCC--HHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYF-DCHAWVRVSLDYD--FRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~ 261 (401)
..||||++++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 77999999999999999876677899999999999999999999996433 4445 5788999998644 444577788
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHHHcCCc--eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchh
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEM 339 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~ 339 (401)
..+............+.+.+...++..+.++ ||||||||||+ ...|..+ .+||+||||||++.++..+
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~-- 273 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSV-- 273 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTC--
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhh--
Confidence 8877653322122227888999999999877 99999999999 6554432 4689999999999998554
Q ss_pred CCCcce-ecccccCCCC-CCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 340 ENGEKI-RLDSVLFGGP-LIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 340 ~~~~~~-~l~~~~~~~~-L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
.....+ .++ + | +++|||+||...++... +.+.+++++|+ +|+|.++
T Consensus 274 ~~~~~~~~~~------~~l--~~~~a~~l~~~~~~~~~-------~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 274 MGPKHVVPVE------SGL--GREKGLEILSLFVNMKK-------EDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp CSCBCCEECC------SSC--CHHHHHHHHHHHHTSCS-------TTCCTHHHHHHHHTTTCHH
T ss_pred cCCceEEEec------CCC--CHHHHHHHHHHhhCCCh-------hhCcHHHHHHHHHhCCCHH
Confidence 134445 888 7 9 99999999999986422 22356789999 9999764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.89 E-value=5.8e-23 Score=217.98 Aligned_cols=175 Identities=17% Similarity=0.114 Sum_probs=131.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCe-EEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
...|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445999999999999998633 4789999999999999999999998888999996 99999999999888888877753
Q ss_pred CCCC---CCccc----cCcCHHHHHHHHHHHc---CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752 265 IPPS---RVSVI----IGEDYQLKKSILRDYL---TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL 334 (401)
Q Consensus 265 ~~~~---~~~~~----~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 334 (401)
+... ..... ...+.+.+...+++.| .++|+||||||||+ .+.|+.+. +||+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHH
Confidence 2210 00000 1114456677777766 78999999999999 88887652 589999999999998
Q ss_pred hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 335 ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
..+.......+.++...+ +| +++|||+||.+..+.
T Consensus 279 ~~l~g~~vy~LeL~d~dL--~L--S~eEA~eLF~~~~g~ 313 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSM--TL--TPDEVKSLLLKYLDC 313 (1221)
T ss_dssp HHHHHHSSCEEEECSSSS--CC--CHHHHHHHHHHHHCC
T ss_pred HhcCCCeEEEecCccccC--Cc--CHHHHHHHHHHHcCC
Confidence 654111122234441112 58 999999999999653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=209.28 Aligned_cols=189 Identities=16% Similarity=0.182 Sum_probs=138.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-ccccC-eEEEEEcCCCCCHHHHHH---HH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYFD-CHAWVRVSLDYDFRRILD---DI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~~~---~i 260 (401)
..||||+.++++|.++|.....+.++|+|+||||+||||||+.++++..+ ..+|+ .++|++++.. +...++. .+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 78999999999999999865556899999999999999999999996555 78895 8999999876 3333333 34
Q ss_pred HHHcCCCCCCccccCc-CHHHHHHHHHHHcCC--ceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
+..++...... .... +...+...+...+.+ +++||||||+|+ ...+. .+ .+|++||||||++.++..+
T Consensus 203 ~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~----~l---~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 203 CTRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLK----AF---DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHH----TT---CSSCEEEEEESCGGGGTTC
T ss_pred HHHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHH----Hh---cCCCeEEEECCCcHHHHhc
Confidence 44554211110 1122 677788888888866 799999999999 64433 33 4589999999999987765
Q ss_pred hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752 338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF 400 (401)
Q Consensus 338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~ 400 (401)
. +....+ .++ +| +.+||++||...++... +.+.+.+.+|+ +|+|.++
T Consensus 274 ~-~~~~~v~~l~------~L--~~~ea~~L~~~~~~~~~-------~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 274 M-GPKYVVPVES------SL--GKEKGLEILSLFVNMKK-------ADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp C-SCEEEEECCS------SC--CHHHHHHHHHHHHTSCG-------GGSCTHHHHHHHHHTTCHH
T ss_pred C-CCceEeecCC------CC--CHHHHHHHHHHHhCCCc-------ccccHHHHHHHHHhCCCcH
Confidence 1 111223 346 89 99999999999997421 11245678999 9999764
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=6.6e-15 Score=118.96 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHhhh
Q 015752 46 IVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTY 119 (401)
Q Consensus 46 ~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD~~ 119 (401)
+++++++||.+++.+ .++.++++++++|+++| +||.+++.......+ +.++.|+++||++|||+|||||+|
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d---~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD---SQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999998 89999999999999999 999999987311566 899999999999999999999999
Q ss_pred hhhhhhc
Q 015752 120 FTNIMQQ 126 (401)
Q Consensus 120 ~~~~~~~ 126 (401)
.++....
T Consensus 79 ~~~~~~~ 85 (115)
T 3qfl_A 79 LVQVDGI 85 (115)
T ss_dssp HHHHHHC
T ss_pred HHHhccc
Confidence 9988653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=4.7e-13 Score=131.72 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=115.9
Q ss_pred CccccccccHHHHHHHH-hc--CC--CCceEEEE--EcCCCCchHHHHHHhhcccCccc-----ccC-eEEEEEcCCCCC
Q 015752 186 LDISHFERGREELFDLL-IE--GS--SGLSVVAI--LDSGGFDKTAFAADTYNNNHVKF-----YFD-CHAWVRVSLDYD 252 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~-~~~wv~vs~~~~ 252 (401)
..++||+.++++|.++| .. .. .....+.| +|++|+|||||++.+++. ... .|. .++|++.....+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence 78999999999999988 42 11 23456666 999999999999999983 322 123 467888777778
Q ss_pred HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC--CceEEEEEeCCCC-Cc------hhHHHHHhhCCCC---C-
Q 015752 253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD-DS------EIWIDVEELLPDD---E- 319 (401)
Q Consensus 253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~------~~~~~l~~~l~~~---~- 319 (401)
...++..++.+++..... ...+...+...+.+.+. +++++|||||++. +. +.+..+...+... .
T Consensus 100 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 889999999998654211 01145566666776664 6899999999977 21 3344443333211 2
Q ss_pred -CCcEEEEecCChhHHhhch------hCCCcc-eecccccCCCCCCCChHHHHHHHHHhh
Q 015752 320 -NGSRVFITVTDPDLLASLE------MENGEK-IRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 320 -~gs~iivTTR~~~v~~~~~------~~~~~~-~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.+..+|+||+...+...+. ...... +.+. || +.++++++|...+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~------~l--~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP------AY--KSRELYTILEQRA 228 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeC------CC--CHHHHHHHHHHHH
Confidence 3455888887665432210 011122 5888 99 9999999998764
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.39 E-value=2.1e-12 Score=123.96 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=120.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC------CCHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD------YDFRRILDD 259 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~------~~~~~~~~~ 259 (401)
..|+||+.++++|.+++..+ +++.|+|++|+|||||++.+++.. . .+|++.... .+...++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 67999999999999998752 689999999999999999998732 1 677776443 255666666
Q ss_pred HHHHcCCC------------C-CCccccCc-CHHHHHHHHHHHcCC-ceEEEEEeCCCC-Cc-------hhHHHHHhhCC
Q 015752 260 IIKSVIPP------------S-RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-DS-------EIWIDVEELLP 316 (401)
Q Consensus 260 i~~~l~~~------------~-~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~-~~-------~~~~~l~~~l~ 316 (401)
+...+... . ........ +...+...+.+.... ++++|||||++. +. ..+..|...+.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66655420 0 00001111 556666677666643 389999999977 21 22333333222
Q ss_pred CCCCCcEEEEecCChhHHhhc----h----h-CCCc-ceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHH
Q 015752 317 DDENGSRVFITVTDPDLLASL----E----M-ENGE-KIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFR 386 (401)
Q Consensus 317 ~~~~gs~iivTTR~~~v~~~~----~----~-~~~~-~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~ 386 (401)
. ..+.++|+|++........ . . +... .+.+. || +.+|+.+++...+...... .. .
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~------pl--~~~e~~~~l~~~~~~~~~~--~~----~ 225 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVK------PF--DKDTSVEFLKRGFREVNLD--VP----E 225 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECC------CC--CHHHHHHHHHHHHHTTTCC--CC----H
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCC------CC--CHHHHHHHHHHHHHHcCCC--CC----H
Confidence 2 2478899998876542210 0 0 1112 33888 99 9999999998865321111 11 3
Q ss_pred HHHHHHh-ccCCCCC
Q 015752 387 QLGDKFV-LCWSYLF 400 (401)
Q Consensus 387 ~i~~~i~-~C~~~l~ 400 (401)
+....|+ .|+|+++
T Consensus 226 ~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 226 NEIEEAVELLDGIPG 240 (350)
T ss_dssp HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCHH
Confidence 4567778 8888753
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.5e-11 Score=119.91 Aligned_cols=172 Identities=13% Similarity=-0.010 Sum_probs=116.4
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccc--------cCeEEEEEcCCCC-CHH
Q 015752 186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY--------FDCHAWVRVSLDY-DFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~ 254 (401)
..++||+.+++++.++|.. .......+.|+|++|+|||+||+.+++. .... ....+|++.+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864 2344568999999999999999999983 3211 2356788877666 788
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-Cchh-HHH-HHhhCCCCCCCcEEEEecCC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEI-WID-VEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~-~~~-l~~~l~~~~~gs~iivTTR~ 330 (401)
.++..++..+..... .... +...+...+.+.+..++.+||||+++. .... .+. +...+... .+..+|+||+.
T Consensus 98 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 888888888733211 1112 456677788888877666999999976 2111 222 22222212 57888999887
Q ss_pred hhHH----hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 331 PDLL----ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 331 ~~v~----~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.... ......-...+.++ |+ +.++..++|...+
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~------~l--~~~~~~~il~~~~ 210 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFK------PY--DAEQLKFILSKYA 210 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEEC------CC--CHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEEC------CC--CHHHHHHHHHHHH
Confidence 5321 11100112244999 99 9999999999986
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=1.3e-11 Score=118.66 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=102.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-----CCHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-----YDFRRILDDI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 260 (401)
..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+++. ... ..+|++.... .+...++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 789999999999999 643 58999999999999999999874 222 2578886642 3444444444
Q ss_pred HHHcC-------------CCC-----CC-cccc-----Cc-CHHHHHHHHHHHcCCceEEEEEeCCCC-Cc---hhHHHH
Q 015752 261 IKSVI-------------PPS-----RV-SVII-----GE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DS---EIWIDV 311 (401)
Q Consensus 261 ~~~l~-------------~~~-----~~-~~~~-----~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~---~~~~~l 311 (401)
...+. ... .. .... .. ....+...+.+... ++++|||||++. +. ..|..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 43321 000 00 0000 11 45556666655433 499999999966 21 223222
Q ss_pred HhhCCCCCCCcEEEEecCChhHHhhc--------hhC-CC-cceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 312 EELLPDDENGSRVFITVTDPDLLASL--------EME-NG-EKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 312 ~~~l~~~~~gs~iivTTR~~~v~~~~--------~~~-~~-~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
...+.+...+.++|+|++........ ... .. ..+.+. || +.+|+.+++...+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~------~l--~~~e~~~~l~~~~ 222 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK------PF--SREEAIEFLRRGF 222 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEEC------CC--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecC------CC--CHHHHHHHHHHHH
Confidence 22222222367899999987642211 001 11 233889 99 9999999998865
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=2.1e-11 Score=110.06 Aligned_cols=191 Identities=11% Similarity=-0.001 Sum_probs=107.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
+.+++|++..++.+..++..+. ....+.|+|++|+||||||+.+++.......+.. ........ ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccC
Confidence 3789999999999999997643 2357889999999999999999873221111100 00000000 01111000
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhh
Q 015752 265 IPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LAS 336 (401)
Q Consensus 265 ~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~ 336 (401)
............ ....+. .+.+.+ .+++.+|||||++. +...++.+...+.....+..+|+||+.... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 000000000000 112222 222222 35689999999976 567778887777655567888888876542 111
Q ss_pred chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
.. .....+.++ ++ +.++..+++...+..... ... .+....|+ .|+|.+
T Consensus 173 l~-~r~~~i~l~------~l--~~~e~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~G~~ 221 (250)
T 1njg_A 173 IL-SRCLQFHLK------AL--DVEQIRHQLEHILNEEHI---AHE---PRALQLLARAAEGSL 221 (250)
T ss_dssp HH-TTSEEEECC------CC--CHHHHHHHHHHHHHHTTC---CBC---HHHHHHHHHHHTTCH
T ss_pred HH-HHhhhccCC------CC--CHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHcCCCH
Confidence 10 122333899 99 999999999988742111 111 23456677 777754
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=2.8e-11 Score=117.65 Aligned_cols=172 Identities=14% Similarity=0.017 Sum_probs=114.9
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccc------cCeEEEEEcCCCCCHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY------FDCHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~ 257 (401)
..++||+.+++++..++... ......+.|+|++|+||||||+.+++. .... -...+|++.....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 68999999999999998542 344567889999999999999999873 3221 1246788888888888999
Q ss_pred HHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc--CCceEEEEEeCCCC-Cch--hHHHH---HhhCCCC--CCCcEEEE
Q 015752 258 DDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVFD-DSE--IWIDV---EELLPDD--ENGSRVFI 326 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~~~--~~~~l---~~~l~~~--~~gs~iiv 326 (401)
..++.+++.... ... +...+...+.+.+ .+++.+||||+++. ... ..+.+ ....... ..+..+|.
T Consensus 97 ~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 97 SAIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 999999865422 122 4666667777776 35689999999976 211 22223 2222211 34567777
Q ss_pred ecCChhHHh----hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 327 TVTDPDLLA----SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 327 TTR~~~v~~----~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
||+...... .......... .++ |+ +.++..+++...+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~------~l--~~~~~~~il~~~~ 214 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFP------PY--TAPQLRDILETRA 214 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBC------CC--CHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeC------CC--CHHHHHHHHHHHH
Confidence 777653211 1100112224 888 99 9999999999885
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=8.9e-11 Score=114.35 Aligned_cols=173 Identities=18% Similarity=0.188 Sum_probs=122.4
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCccccc-CeEEEEEcCCCCCHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF-DCHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 260 (401)
..++||+.+++++.+++.. .....+.+.|+|++|+|||||++.+++. ..... ...+|++.+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999998865 2222348899999999999999999873 33321 256778877777888999999
Q ss_pred HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-CchhHHHHHhhCCCCC----CCcEEEEecCChh
Q 015752 261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-DSEIWIDVEELLPDDE----NGSRVFITVTDPD 332 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~----~gs~iivTTR~~~ 332 (401)
+..++.... ... +...+...+.+.+. +++.+||||+++. +......|...+.... .+..||+||+...
T Consensus 95 ~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 95 ARSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 998865421 112 45566666666653 6789999999977 5666777777664422 4677888887765
Q ss_pred HHhhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 333 LLASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 333 v~~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...... .. ....+.+. |+ +.++..+++...+.
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~------pl--~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFS------PY--TKDQIFDILLDRAK 207 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECC------CC--BHHHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeC------CC--CHHHHHHHHHHHHH
Confidence 433220 00 11234888 99 99999999998863
No 13
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=1.2e-11 Score=120.05 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=115.4
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCccccc---CeEEEEEcCCCCCHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i 260 (401)
..++||+.+++.+.+++... ......+.|+|++|+|||||++.+++ .....+ ...+|++.....+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 78999999999999988742 34456888999999999999999988 343332 256778776666777888888
Q ss_pred HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C----chhHHHHHhhCCC-CCCCcEEEEecCCh
Q 015752 261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D----SEIWIDVEELLPD-DENGSRVFITVTDP 331 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~-~~~gs~iivTTR~~ 331 (401)
+.+++.... ... +...+...+.+.+. +++.+||||+++. . ...+..+...+.. ...+..+|+||+..
T Consensus 98 ~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 98 LESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp TTTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 887754321 111 45565666666664 4589999999966 1 3344445444321 23356678888766
Q ss_pred hHHhhc----hhCCC-cceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 332 DLLASL----EMENG-EKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 332 ~v~~~~----~~~~~-~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.....+ ..... ..+.++ |+ +.++..++|...+
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~------~l--~~~~~~~il~~~~ 210 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFP------PY--NAEELEDILTKRA 210 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEEC------CC--CHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeC------CC--CHHHHHHHHHHHH
Confidence 432222 00112 234999 99 9999999999875
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.7e-10 Score=102.69 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=97.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccC-eEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++. ... .+. ..+.++.+.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHHH
Confidence 789999999999999997643 233889999999999999999873 211 122 23344444333332222211111
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-HhhchhCC
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASLEMEN 341 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~~~~~ 341 (401)
..... ...+++.+|||||++. +...++.+...+.....++++|+||+.... ..... ..
T Consensus 93 ~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~-~r 152 (226)
T 2chg_A 93 ARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SR 152 (226)
T ss_dssp HTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TT
T ss_pred hcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-Hh
Confidence 11100 0125789999999977 455566666665544557788888876531 11110 12
Q ss_pred CcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...+.+. ++ +.++...++...+.
T Consensus 153 ~~~i~~~------~~--~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 153 CAVFRFK------PV--PKEAMKKRLLEICE 175 (226)
T ss_dssp SEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred CceeecC------CC--CHHHHHHHHHHHHH
Confidence 2334888 99 99999999998873
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=9.9e-10 Score=104.10 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=104.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccC-eEEEEEcCCCCCHHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.+++|++..++.+.+++..+. ...+.|+|++|+|||++|+.+++. ... .+. ..++++.+....... +.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 789999999999999987643 233889999999999999999873 211 111 234444433322221 1222221
Q ss_pred cCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhC
Q 015752 264 VIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEME 340 (401)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~ 340 (401)
+... ...+ .+++.+|||||++. ....++.|...+.....++++|+||+... +...+. .
T Consensus 96 ~~~~------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~-s 156 (323)
T 1sxj_B 96 FAQK------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ-S 156 (323)
T ss_dssp HHHB------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-T
T ss_pred HHhc------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-h
Confidence 1100 0011 35689999999977 45555666655544455778888887643 111110 1
Q ss_pred CCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 341 NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 341 ~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
....+.+. ++ +.++..+++...+... +.... .+....|+ .|+|.+
T Consensus 157 r~~~i~~~------~~--~~~~~~~~l~~~~~~~---~~~~~---~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 157 QCAILRYS------KL--SDEDVLKRLLQIIKLE---DVKYT---NDGLEAIIFTAEGDM 202 (323)
T ss_dssp TSEEEECC------CC--CHHHHHHHHHHHHHHH---TCCBC---HHHHHHHHHHHTTCH
T ss_pred hceEEeec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence 12233888 99 9999999999876321 11111 23445666 677754
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=6.5e-09 Score=98.59 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=94.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc-cC-eEEEEEcCCCCCHHHHHHHHHH
Q 015752 185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY-FD-CHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
+.+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++. +... +. ..+.++.+...... .+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~--- 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE--- 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH---
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH---
Confidence 3789999999999999987642 334889999999999999999873 2111 11 22333322211000 0000
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHH--c-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhhc
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASL 337 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~ 337 (401)
........ + .+++.+||+|+++. ....++.|...+.....++++|+||....- ....
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 157 (327)
T 1iqp_A 96 ------------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 157 (327)
T ss_dssp ------------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ------------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH
Confidence 11111111 1 25788999999977 556677777666555567888888876531 1111
Q ss_pred hhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 338 EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
. .....+.+. |+ +.++...++...+.
T Consensus 158 ~-sr~~~~~~~------~l--~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 158 Q-SRCAIFRFR------PL--RDEDIAKRLRYIAE 183 (327)
T ss_dssp H-HTEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred H-hhCcEEEec------CC--CHHHHHHHHHHHHH
Confidence 0 011233888 99 99999999998874
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=9.5e-08 Score=90.51 Aligned_cols=172 Identities=10% Similarity=0.031 Sum_probs=103.7
Q ss_pred ccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcc---cccC--eEEEEEcCCCCCHHHHHHH
Q 015752 187 DISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVK---FYFD--CHAWVRVSLDYDFRRILDD 259 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~~~~ 259 (401)
.+.||++++++|...|.. .......+.|+|++|.|||++++.+++..... .... ..+.++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999988865 24456778899999999999999999843211 1111 3556666677788899999
Q ss_pred HHHHcCCCCCCccccCcCHHHHHHHHHHH--cCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCCh---h
Q 015752 260 IIKSVIPPSRVSVIIGEDYQLKKSILRDY--LTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDP---D 332 (401)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~---~ 332 (401)
|++++.+... ........+...+... -.+++++++||++.. . .+.+-.+............||.++... .
T Consensus 101 I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 101 IWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999966421 1111344444444432 246789999999977 2 222222222111111122333334332 1
Q ss_pred --H----HhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 333 --L----LASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 333 --v----~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+ ...+ ....+.+. |+ +.++-.+++..++.
T Consensus 178 ~~L~~~v~SR~---~~~~i~F~------pY--t~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKA---HFTEIKLN------KV--DKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHT---TEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred hhcchhhhccC---CceEEEeC------CC--CHHHHHHHHHHHHH
Confidence 1 1122 11234888 99 99999999999873
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.67 E-value=1.1e-07 Score=89.79 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=94.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|++..++.+.+++..+ ....+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----------
Confidence 78999999999998888653 233388999999999999999987310 11111 1233333321110
Q ss_pred CCCCCCccccCcCHHHHHHHHHHH--c-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchh
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEM 339 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~ 339 (401)
. ........+... + .+++.++|+|++.. .....+.|...+.....++++|+||.... +.....
T Consensus 83 ----------~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 150 (319)
T 2chq_A 83 ----------D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ- 150 (319)
T ss_dssp ----------T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH-
T ss_pred ----------H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH-
Confidence 0 111111111111 1 25688999999976 45666777777766566788888876653 211111
Q ss_pred CCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.....+.+. ++ +.++...++...+.
T Consensus 151 sr~~~i~~~------~~--~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 151 SRCAVFRFK------PV--PKEAMKKRLLEICE 175 (319)
T ss_dssp TTCEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred hhCeEEEec------CC--CHHHHHHHHHHHHH
Confidence 112233888 99 99999999988774
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=1.5e-07 Score=90.98 Aligned_cols=169 Identities=12% Similarity=0.006 Sum_probs=94.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
.+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+.+.......+. ..++........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 679999999999999987642 234678999999999999999986322111110 000000000111111000
Q ss_pred CCCCCcc---ccCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhch
Q 015752 266 PPSRVSV---IIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLE 338 (401)
Q Consensus 266 ~~~~~~~---~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~ 338 (401)
....... .... ....+...+... ..+++.+||+|++.. +...++.|...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 0000000 0000 222222222111 135678999999976 56667777777655555677777776543 211111
Q ss_pred hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.....+.+. ++ +.++...++...+
T Consensus 168 -sr~~~i~~~------~l--~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 168 -SRCLQFHLK------AL--DVEQIRHQLEHIL 191 (373)
T ss_dssp -TTSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred -hheeEeeCC------CC--CHHHHHHHHHHHH
Confidence 122233888 99 9999999998776
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.52 E-value=2.6e-07 Score=87.60 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=86.1
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+++|++..+..+..++.. .......+.|+|++|+|||+||+.+++. ... ..++++.+.......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH-------
Confidence 7899999999988888753 1223456789999999999999999872 221 223444332222111
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcE
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE------------------NGSR 323 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~ 323 (401)
+...+...+ .+..+|+||++.. .......+...+.... .+.+
T Consensus 80 ------------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 80 ------------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ------------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ------------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 111111111 3556899999977 4444454543332210 2345
Q ss_pred EEEecCChh-HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPD-LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~-v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|.||.... +..... .....+ .+. ++ +.++...++...+.
T Consensus 141 ~i~~t~~~~~~~~~l~-~R~~~~i~l~------~~--~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 141 LIGATTRPGLITAPLL-SRFGIVEHLE------YY--TPEELAQGVMRDAR 182 (324)
T ss_dssp EEEEESCCSSCSCSTT-TTCSCEEECC------CC--CHHHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHH-hcccEEEecC------CC--CHHHHHHHHHHHHH
Confidence 666655432 211111 112234 888 99 99999999988874
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=5.9e-08 Score=83.97 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=38.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..++||++.++++.+++... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999998763 3456789999999999999999873
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=2.5e-07 Score=88.63 Aligned_cols=188 Identities=11% Similarity=0.042 Sum_probs=102.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+.+.......+. ....++.+.......+ .+.+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 789999999999999987642 22378999999999999999987321111122 2333343332232222 1211111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCC
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENG 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~ 342 (401)
...... ... .. .....-.+++-+|++|++.. +......|...+.......++|++|.... +...... ..
T Consensus 114 ~~~~~~--~~~-~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s-R~ 184 (353)
T 1sxj_D 114 ARLTVS--KPS-KH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS-QC 184 (353)
T ss_dssp HHSCCC--CCC-TT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-HS
T ss_pred hhhccc--ccc-hh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc-cC
Confidence 100000 000 00 00111124567999999866 45555666655544445667777765443 2111100 11
Q ss_pred cceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752 343 EKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL 399 (401)
Q Consensus 343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l 399 (401)
..+.+. ++ +.++....+...+... +.... .+....|+ .|+|++
T Consensus 185 ~~i~~~------~~--~~~~~~~~l~~~~~~~---~~~i~---~~~l~~l~~~~~G~~ 228 (353)
T 1sxj_D 185 SKFRFK------AL--DASNAIDRLRFISEQE---NVKCD---DGVLERILDISAGDL 228 (353)
T ss_dssp EEEECC------CC--CHHHHHHHHHHHHHTT---TCCCC---HHHHHHHHHHTSSCH
T ss_pred ceEEeC------CC--CHHHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHcCCCH
Confidence 234888 99 9999999999876421 11111 34455666 667654
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=1.4e-06 Score=81.07 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=88.4
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.+++|.+..+++|.+.+... -....-+.|+|++|+|||+||+.+++. .... .+.+..+.-
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~---- 87 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL---- 87 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH----
Confidence 78999999999998877431 123456889999999999999999873 3222 222222111
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------c---hhHHHHHhhCC--
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------S---EIWIDVEELLP-- 316 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~---~~~~~l~~~l~-- 316 (401)
... ... ....+...+......++.+|+||++.. . . ..+..+...+.
T Consensus 88 ----------~~~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 ----------VKK------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp ----------CCC------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred ----------HHh------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 000 011 122222233333345678999999953 0 1 11222222221
Q ss_pred CCCCCcEEEEecCChhHHhhchhC--CCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 317 DDENGSRVFITVTDPDLLASLEME--NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 317 ~~~~gs~iivTTR~~~v~~~~~~~--~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
....+..||.||.........-.. ..... .++ ++ +.++..++|...+..
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~------~p--~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP------AP--DEKGRLEILKIHTRK 203 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC------CC--CHHHHHHHHHHHHhc
Confidence 123456778888765321110001 22234 777 88 999999999988754
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.40 E-value=1.5e-07 Score=84.84 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=79.4
Q ss_pred Ccccccc---ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFE---RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+++|.+ ..++.+..++..+ ....+.|+|++|+||||||+.+++ ........+.|++.+.-..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~---------- 93 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHAS---------- 93 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGG----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHH----------
Confidence 6777743 4445555555432 356788999999999999999987 3333333456666533110
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cchh--HHHHHhhCCCC-CCC-cEEEEecCChh-----
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEI--WIDVEELLPDD-ENG-SRVFITVTDPD----- 332 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~--~~~l~~~l~~~-~~g-s~iivTTR~~~----- 332 (401)
.+ .... +.+ .++.+|||||++. .... .+.+...+... ..+ .++|+||+...
T Consensus 94 ~~----------~~~~--------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 94 IS----------TALL--------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp SC----------GGGG--------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred HH----------HHHH--------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0000 001 3567999999976 2222 23333332211 112 24777766321
Q ss_pred ----HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 333 ----LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 333 ----v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+...+ ....+ .+. ++ +.++..+++...+.
T Consensus 155 ~~~~l~~r~---~~~~~i~l~------~~--~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 155 VLPDLVSRM---HWGLTYQLQ------PM--MDDEKLAALQRRAA 188 (242)
T ss_dssp CCHHHHHHH---HHSEEEECC------CC--CGGGHHHHHHHHHH
T ss_pred hhhhhhhHh---hcCceEEeC------CC--CHHHHHHHHHHHHH
Confidence 22111 11134 888 99 99999999998873
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=2.3e-06 Score=81.29 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=87.2
Q ss_pred CccccccccHHHHHHHHh----------cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLI----------EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+.+++ .....| +.++. ..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~------~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEH------HH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEch------HH
Confidence 789999999999988773 1122345688999999999999999988 332222 22222 11
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHH-HHHcCCceEEEEEeCCCC-Cc-----------hhHHHHHhhCC---CCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSIL-RDYLTNKKYFIVLDDVFD-DS-----------EIWIDVEELLP---DDE 319 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~L~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~---~~~ 319 (401)
+ .... .. ........+ ...-..++.+|+||++.. .. .....+...+. ...
T Consensus 87 l----~~~~---------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 L----VSKW---------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H----HTTT---------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H----hhcc---------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1110 01 122222222 222235678999999964 11 11233333322 223
Q ss_pred CCcEEEEecCChhHH-hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 320 NGSRVFITVTDPDLL-ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 320 ~gs~iivTTR~~~v~-~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
.+..||.||...... ..+...-...+.+. +. +.++-.++|...+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~------~p--~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIP------LP--DLAARTTMFEINVGD 199 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeC------CC--CHHHHHHHHHHHhcc
Confidence 455666677654321 11100112223677 77 999999999998864
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.38 E-value=1.3e-05 Score=76.08 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=84.9
Q ss_pred CccccccccHHHHHHHHhc---------C-CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLIE---------G-SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++.|.+.+.. + ....+-+.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence 7899999988888877631 1 12346788999999999999999998320 11 12223332111
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------ch----hHHHHHhhCCC---CCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SE----IWIDVEELLPD---DEN 320 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~---~~~ 320 (401)
.. -.......+...+...-..++.+|+||++.. . .. ....+...+.. ...
T Consensus 84 ----------~~-----~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 ----------SK-----WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ----------CS-----SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ----------hh-----hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00 0010222222223323345788999999965 0 01 11222222221 223
Q ss_pred CcEEEEecCChhH-HhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 321 GSRVFITVTDPDL-LASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 321 gs~iivTTR~~~v-~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
+..||.||..+.. -.... ...... .++ +. +.++..++|...+..
T Consensus 149 ~v~vI~atn~~~~ld~al~-rRf~~~i~i~------~P--~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIR-RRFEKRIYIP------LP--EPHARAAMFKLHLGT 194 (322)
T ss_dssp TEEEEEEESCTTTSCHHHH-HTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CEEEEEecCCcccCCHHHH-hhcCeEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence 4555556654421 11110 122233 777 77 889999999888754
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.36 E-value=6.8e-07 Score=84.10 Aligned_cols=158 Identities=11% Similarity=0.096 Sum_probs=87.7
Q ss_pred ccccccccHHHHHHHHhc-------------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCH
Q 015752 187 DISHFERGREELFDLLIE-------------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF 253 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (401)
+++|.+..++.+.+.+.. .......+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 588998888888766542 1234456889999999999999988763211111111122222210
Q ss_pred HHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 015752 254 RRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 254 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~ 323 (401)
.+... -.......+...+... +..+|+||++.. .......|...+.....+..
T Consensus 109 ---------~l~~~-----~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQ-----YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCS-----STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhh-----cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 11111 0111222222222222 345999999972 14445566655555555677
Q ss_pred EEEecCChhHHhh------chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPDLLAS------LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~v~~~------~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
||.||........ +.......+.++ ++ +.++-..++...+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~------~~--~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFP------DY--SDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEEC------CC--CHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcC------Cc--CHHHHHHHHHHHHH
Confidence 8888765432111 000011233888 99 99999999988764
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=6.5e-06 Score=75.27 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=83.3
Q ss_pred CccccccccHHHHHHHHh---cCC-------CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLI---EGS-------SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++.+.+++. ... .....+.|+|++|+|||+||+.+++ ..... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHh---
Confidence 678999888877766542 111 2345678999999999999999987 33222 23333332111
Q ss_pred HHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCc-----------------hhHHHHHhhCCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDS-----------------EIWIDVEELLPD 317 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~~l~~~l~~ 317 (401)
.... ....+...+.......+.+|+||++.. - .....+...+..
T Consensus 78 -----------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 78 -----------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp -----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHT
T ss_pred -----------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhC
Confidence 0111 222233333333345678999999965 1 112233332222
Q ss_pred --CCCCcEEEEecCChhHH-hhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 318 --DENGSRVFITVTDPDLL-ASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 318 --~~~gs~iivTTR~~~v~-~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...+..||.||...... .... .+..... .++ +. +.++..+++...+.
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~------~p--~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID------LP--TLQERREIFEQHLK 191 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC------SC--CHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC------Cc--CHHHHHHHHHHHHH
Confidence 12355666677655421 1110 0122233 777 77 99999999888763
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=9.2e-07 Score=87.88 Aligned_cols=153 Identities=12% Similarity=0.139 Sum_probs=88.3
Q ss_pred Cccc-ccccc--HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHH
Q 015752 186 LDIS-HFERG--REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 186 ~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 260 (401)
.+|+ |.... ...+......... ...+.|+|++|+||||||+.+++ .....+. .+++++. ..+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHH
Confidence 5666 64433 3333433333222 56788999999999999999998 4433332 3445543 2334444
Q ss_pred HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh-----
Q 015752 261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--EIWIDVEELLPD-DENGSRVFITVTDP----- 331 (401)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~iivTTR~~----- 331 (401)
...+... ... .+.+.+..+.-+|+|||+.. .. ...+.+...+.. ...|..||+||.+.
T Consensus 176 ~~~~~~~---------~~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 176 VDSMKEG---------KLN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHTT---------CHH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHcc---------cHH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 4444322 111 23333444677999999966 21 233444433321 13467888888763
Q ss_pred ----hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 332 ----DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 332 ----~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.+...+ ....+ .++ ++ +.++...++.+.+
T Consensus 243 ~l~~~L~sR~---~~g~~i~l~------~p--~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 243 EFQDRLVSRF---QMGLVAKLE------PP--DEETRKSIARKML 276 (440)
T ss_dssp SCCHHHHHHH---HSSBCCBCC------CC--CHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---cCCeEEEeC------CC--CHHHHHHHHHHHH
Confidence 233323 22234 888 99 9999999999887
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=8.2e-06 Score=78.62 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=93.1
Q ss_pred CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE----cCCCCCHHHHHH
Q 015752 186 LDISHFERGREE---LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR----VSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~ 258 (401)
.+++|++..++. +...+..+......+.|+|++|+|||+||+.+.+. ...... .+.+. .+........+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhHHHH
Confidence 789999988766 45555544333467889999999999999999883 322111 11222 122334444444
Q ss_pred HHHHHcCCCC---------------------C---Cc-cc-cCcCHHHHHHHHHHHc-----CCc----eEEEEEeCCCC
Q 015752 259 DIIKSVIPPS---------------------R---VS-VI-IGEDYQLKKSILRDYL-----TNK----KYFIVLDDVFD 303 (401)
Q Consensus 259 ~i~~~l~~~~---------------------~---~~-~~-~~~~~~~l~~~l~~~L-----~~k----r~LlVlDdv~~ 303 (401)
+.+....... . .. .. .......+...+.+.. .++ +.+|+||++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 4444321100 0 00 00 0001122222222211 233 45999999977
Q ss_pred -CchhHHHHHhhCCCCCCCcEEEEecCC-----------------hhHHhhchhCCCcceecccccCCCCCCCChHHHHH
Q 015752 304 -DSEIWIDVEELLPDDENGSRVFITVTD-----------------PDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQ 365 (401)
Q Consensus 304 -~~~~~~~l~~~l~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~ 365 (401)
+.+....|...+...... .++++|.. +.+...+ ..+.+. ++ +.++..+
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~------~~--~~~e~~~ 266 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTT------PY--SEKDTKQ 266 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEEC------CC--CHHHHHH
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEec------CC--CHHHHHH
Confidence 566677777777654433 34444431 1222222 224788 99 9999999
Q ss_pred HHHHhhC
Q 015752 366 FFILHYG 372 (401)
Q Consensus 366 Lf~~~a~ 372 (401)
++...+.
T Consensus 267 il~~~~~ 273 (368)
T 3uk6_A 267 ILRIRCE 273 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.27 E-value=3.5e-06 Score=80.33 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=86.9
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+++|++..++.+..++... ......+.|+|++|+|||+||+.+++ .....| +.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~---------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK---------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc----------
Confidence 78999999999998888642 33445688999999999999999987 332222 2232221111
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcE
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE------------------NGSR 323 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~ 323 (401)
.......+.. ..+..+|+||++.. .......|...+.... ++..
T Consensus 94 ---------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 94 ---------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1111111111 24567899999876 4444455544433221 1245
Q ss_pred EEEecCChh-HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 324 VFITVTDPD-LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 324 iivTTR~~~-v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
+|.||.... +..... ...... .+. ++ +.++...++...+.
T Consensus 157 ~i~atn~~~~l~~~L~-~R~~~~i~l~------~~--~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLR-DRFGMQFRLE------FY--KDSELALILQKAAL 198 (338)
T ss_dssp EEEEESCGGGSCHHHH-TTCSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHH-hhcCEEeeCC------Cc--CHHHHHHHHHHHHH
Confidence 665555432 111111 122234 899 99 99999999988774
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.26 E-value=8.3e-06 Score=78.60 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=84.8
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++ .....| +.++. ..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~------~~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEH------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeH------HH
Confidence 7899999999999887731 112234578999999999999999998 332222 22222 11
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cch-----------hHHHHHhhC---CCCCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSE-----------IWIDVEELL---PDDEN 320 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~-----------~~~~l~~~l---~~~~~ 320 (401)
+ ....... ....+...+...-..++.+|+||++.. ... ....+...+ .....
T Consensus 120 l----~~~~~g~---------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 L----VSKWMGE---------SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp H----HSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred H----hhhhcch---------HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 1111110 222222222222345789999999965 110 122232222 22233
Q ss_pred CcEEEEecCChhH-HhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 321 GSRVFITVTDPDL-LASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 321 gs~iivTTR~~~v-~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
+..||.||..... ...+. ...... .+. +. +.++...+|...+..
T Consensus 187 ~v~vI~atn~~~~ld~al~-rRf~~~i~i~------~P--~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIR-RRFERRIYIP------LP--DLAARTTMFEINVGD 232 (355)
T ss_dssp CEEEEEEESCGGGSCHHHH-HTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CeEEEeecCCcccCCHHHH-cccCEEEEeC------Cc--CHHHHHHHHHHHHhh
Confidence 5566667765421 11110 122233 777 77 899999999988754
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.26 E-value=1.2e-06 Score=73.17 Aligned_cols=113 Identities=11% Similarity=-0.072 Sum_probs=65.6
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC
Q 015752 187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP 266 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 266 (401)
+++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..... + ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc-------------
Confidence 5789999999999888542122234679999999999999999873211 11122 2 444332211
Q ss_pred CCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD 330 (401)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 330 (401)
. .... .+.. .+.-.|+||++.. +......|...+.......++|.||..
T Consensus 66 ~---------~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 P---------QLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp S---------CHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred h---------hhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0 1111 1111 1234689999977 555556666665444445677777764
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.25 E-value=5.2e-06 Score=78.66 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=85.3
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
+.+++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. ... .+..++...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHHHHH
Confidence 3789999999999999987542 3457788899999999999999873 32 12344444332 222 222211111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChh-----HHhhc
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPD-----LLASL 337 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-----v~~~~ 337 (401)
.... ...+++.+|+||++.. . .+..+.|...+.....++++|+||.... +...+
T Consensus 97 ~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 97 ASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred Hhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 0000 0124788999999987 4 4455666655543334567888777643 22222
Q ss_pred hhCCCcceecccccCCCCCCCChHHHH
Q 015752 338 EMENGEKIRLDSVLFGGPLIRLKHEAW 364 (401)
Q Consensus 338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~ 364 (401)
..+.++ ++ +.++-.
T Consensus 158 -----~~i~~~------~~--~~~e~~ 171 (324)
T 3u61_B 158 -----RVITFG------QP--TDEDKI 171 (324)
T ss_dssp -----EEEECC------CC--CHHHHH
T ss_pred -----cEEEeC------CC--CHHHHH
Confidence 223777 88 887743
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=1.3e-05 Score=79.75 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=85.7
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 7899999999988887631 0123467889999999999999999983 2 112233333321
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc-----------hhHHHHHhhCCC---CCC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS-----------EIWIDVEELLPD---DEN 320 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~~---~~~ 320 (401)
+. ....+. .......+.... -..++.+|+||++.. .. .....+...+.. ...
T Consensus 204 l~----~~~~g~------~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 LV----SKWLGE------SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred HH----hhhcch------HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11 111111 000222222222 235678999999975 10 112334444432 134
Q ss_pred CcEEEEecCChhHH-hhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 321 GSRVFITVTDPDLL-ASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 321 gs~iivTTR~~~v~-~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
+..||.||..+... ..+ ....... .+. +. +.++...+|...+..
T Consensus 271 ~v~vI~atn~~~~ld~al-~rRf~~~i~i~------~P--~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAI-RRRFEKRIYIP------LP--EAHARAAMFRLHLGS 316 (444)
T ss_dssp SCEEEEEESCGGGSCHHH-HTTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CEEEEecCCCccccCHHH-HhhcceEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence 55666677654321 111 0122333 666 66 888888999888754
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.24 E-value=7.9e-06 Score=78.82 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=37.8
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.|.+.+.. .......+.|+|++|+|||+||+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999887742 112356788999999999999999987
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.23 E-value=8.1e-07 Score=76.46 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=38.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|++..++.+.+.+... ....+.|+|++|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998753 345668999999999999999987
No 38
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.4e-06 Score=88.26 Aligned_cols=163 Identities=10% Similarity=0.014 Sum_probs=90.3
Q ss_pred CccccccccHHHHHHHHhcC---------------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752 186 LDISHFERGREELFDLLIEG---------------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD 250 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 250 (401)
.+++|++..++++.+||... ....+.+.|+|++|+||||+|+.+++. . .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 78999999999999999641 013468899999999999999999983 2 12 2344555544
Q ss_pred CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C---chhHHHHHhhCCCCCCCcEEEE
Q 015752 251 YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D---SEIWIDVEELLPDDENGSRVFI 326 (401)
Q Consensus 251 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~~~gs~iiv 326 (401)
.... ++...+........-..-+. .... .....+++.+|+||++.. . ...+..|...+... +..||+
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIl 184 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFK-HNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLIL 184 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTT-C---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEE
T ss_pred chHH-HHHHHHHHHhccccHHHHHh-hhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEE
Confidence 4432 33333322211100000000 0000 001235788999999965 2 22234444443322 233555
Q ss_pred ecCChh---HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 327 TVTDPD---LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 327 TTR~~~---v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
++.... +.... .....+.+. ++ +.++..+.+...+.
T Consensus 185 i~~~~~~~~l~~l~--~r~~~i~f~------~~--~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 185 ICNERNLPKMRPFD--RVCLDIQFR------RP--DANSIKSRLMTIAI 223 (516)
T ss_dssp EESCTTSSTTGGGT--TTSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred EEcCCCCccchhhH--hceEEEEeC------CC--CHHHHHHHHHHHHH
Confidence 444322 22111 112223888 99 99999999888763
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=1.1e-05 Score=77.15 Aligned_cols=167 Identities=12% Similarity=0.095 Sum_probs=88.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc---Ccc-cccCe--------------------
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN---HVK-FYFDC-------------------- 241 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~-~~F~~-------------------- 241 (401)
.+++|.+...+.+.+++........ +.|+|++|+||||+++.++... ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 7899999988888888723222233 8899999999999999887621 100 00110
Q ss_pred EEEEEcCCCC-CHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC
Q 015752 242 HAWVRVSLDY-DFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE 319 (401)
Q Consensus 242 ~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~ 319 (401)
.+.+..+... ......++++..+..... .. ... .+.. +.+++-+++||++.. +......+...+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~----~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ----VD----FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc----cc----ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 000012222222211100 00 000 0000 234677999999987 6666666666554434
Q ss_pred CCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 320 NGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 320 ~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.++.+|++|.+.. +...+. .....+++. ++ +.++....+...+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~------~~--~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIK-SQCLLIRCP------AP--SDSEISTILSDVVT 207 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHH-TTSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHH-hhceEEecC------Cc--CHHHHHHHHHHHHH
Confidence 4677877776642 222221 112333888 99 99999999998773
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.20 E-value=2e-05 Score=76.78 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.|.+++... .....-+.|+|++|+|||+||+.+++
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 78999999999998887320 12245788999999999999999987
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.17 E-value=3.6e-06 Score=83.71 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=83.1
Q ss_pred CccccccccH---HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-CCHHHHHHHHH
Q 015752 186 LDISHFERGR---EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-YDFRRILDDII 261 (401)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~ 261 (401)
.+++|.+..+ ..+...+..+ ....+.|+|++|+||||||+.+.+ .....| +.++.. ..... +..++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~-ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE-IREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-HHHHH
Confidence 7889988777 6677777653 346788999999999999999998 333222 222211 11111 11111
Q ss_pred HHcCCCCCCccccCcCHHHHHHHHHH-HcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh--HHhhc
Q 015752 262 KSVIPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD--LLASL 337 (401)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~--v~~~~ 337 (401)
..... ...+++.+|+||++.. .....+.|...+.. +.-.-|..||.+.. +....
T Consensus 96 ---------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 96 ---------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp ---------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHH
T ss_pred ---------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHH
Confidence 11111 1246789999999977 44444555555443 22222334666653 11111
Q ss_pred hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
...-.+ .+. ++ +.++...++...+.
T Consensus 154 --~sR~~v~~l~------~l--~~edi~~il~~~l~ 179 (447)
T 3pvs_A 154 --LSRARVYLLK------SL--STEDIEQVLTQAME 179 (447)
T ss_dssp --HTTEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred --hCceeEEeeC------Cc--CHHHHHHHHHHHHH
Confidence 022234 888 99 99999999988864
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=1.8e-06 Score=74.59 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
-..+.|+|++|+|||||++.+++.......+ .++++ +..++...+........ .......+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~--- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGK---------DTKFLKTV--- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTC---------CSHHHHHH---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCch---------HHHHHHHh---
Confidence 4678999999999999999998732212222 22333 33444444444332221 11111221
Q ss_pred cCCceEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 015752 289 LTNKKYFIVLDDVFD-DSEIWI--DVEELLPDD-ENGSRVFITVTD 330 (401)
Q Consensus 289 L~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 330 (401)
.+.-+||||+++. ..+.|. .+...+... ..|..+|+||..
T Consensus 99 --~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1456899999973 123332 233322211 246778888874
No 43
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.11 E-value=1.9e-06 Score=75.85 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=54.7
Q ss_pred Cccccccc----cHHHHHHHHhcCCC--CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHH
Q 015752 186 LDISHFER----GREELFDLLIEGSS--GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD 259 (401)
Q Consensus 186 ~~~vGr~~----~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 259 (401)
.+|++.+. .++.+.+++..... ....+.|+|++|+|||+||+.+++ ........++|++. ..+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHH
Confidence 56666443 34455555544322 126788999999999999999998 34333345566654 344444
Q ss_pred HHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 260 IIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
+....... ........+.+ .-+|||||++.
T Consensus 97 ~~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~ 126 (202)
T 2w58_A 97 LKHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGA 126 (202)
T ss_dssp HHHC---C---------CCHHHHHHHHH-----SSEEEEEEECC
T ss_pred HHHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCC
Confidence 44433211 22223333322 23999999965
No 44
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.09 E-value=2.3e-06 Score=71.25 Aligned_cols=45 Identities=13% Similarity=-0.044 Sum_probs=32.7
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+++|.+..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 578999988888888753111223467999999999999999987
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.07 E-value=5.3e-05 Score=69.84 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred CccccccccHHHHHHH-------Hhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752 186 LDISHFERGREELFDL-------LIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL 257 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 257 (401)
..++|.....+++... +.. .......+.|+|++|+|||+||+.+++. .. +.. +.++.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~-------- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPD-------- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGG--------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHH--------
Confidence 5678887776666653 321 2345678889999999999999999883 22 121 2222221
Q ss_pred HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-----------CchhHHHHHhhCCC---CCCCcE
Q 015752 258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-----------DSEIWIDVEELLPD---DENGSR 323 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~gs~ 323 (401)
.+.+.. .......+...+......+..+|+||++.. .......|...+.. ......
T Consensus 100 -----~~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 -----KMIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp -----GCTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred -----HhcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 011100 000112233333334456789999999742 01122334443332 223345
Q ss_pred EEEecCChhHHhhch-hCCCcce-ecccccCCCCCCCCh-HHHHHHHHH
Q 015752 324 VFITVTDPDLLASLE-MENGEKI-RLDSVLFGGPLIRLK-HEAWQFFIL 369 (401)
Q Consensus 324 iivTTR~~~v~~~~~-~~~~~~~-~l~~~~~~~~L~~~~-~ea~~Lf~~ 369 (401)
||.||.......... .+..... .++ ++ +. ++-..++..
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p------~l--~~r~~i~~i~~~ 210 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVP------NI--ATGEQLLEALEL 210 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECC------CE--EEHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCC------Cc--cHHHHHHHHHHh
Confidence 677887776544310 0121233 777 78 77 665555554
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=8.8e-05 Score=69.16 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=37.5
Q ss_pred CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.+.+.+... ......+.|+|++|+|||+||+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 78999999999998877321 12345788999999999999999987
No 47
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.05 E-value=7.8e-05 Score=71.08 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=84.2
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc--------------------ccCeEEEEEcC---C
Q 015752 193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF--------------------YFDCHAWVRVS---L 249 (401)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~ 249 (401)
+..+.+...+..+ .-...+.++|++|+|||++|+.+.+...-.. +++ ..++... .
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4455666666543 2345788999999999999998876321111 111 1222211 1
Q ss_pred CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752 250 DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR 323 (401)
Q Consensus 250 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (401)
.. ..+++.. +.+.+ .+++-++|+|++.. +.+..+.|...+-....++.
T Consensus 87 ~~-------------------------~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~ 140 (334)
T 1a5t_A 87 TL-------------------------GVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETW 140 (334)
T ss_dssp SB-------------------------CHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEE
T ss_pred CC-------------------------CHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeE
Confidence 11 2222222 22222 25678999999977 56667778777766566777
Q ss_pred EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+|++|.+.+ +...+.. ....+.+. ++ +.++..+.+.+..
T Consensus 141 ~Il~t~~~~~l~~ti~S-Rc~~~~~~------~~--~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 141 FFLATREPERLLATLRS-RCRLHYLA------PP--PEQYAVTWLSREV 180 (334)
T ss_dssp EEEEESCGGGSCHHHHT-TSEEEECC------CC--CHHHHHHHHHHHC
T ss_pred EEEEeCChHhCcHHHhh-cceeeeCC------CC--CHHHHHHHHHHhc
Confidence 777776653 3222211 11233888 99 9999999888775
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=4e-05 Score=73.20 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=86.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV 264 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 264 (401)
.+++|.+..++.|..++..+. ...+.++|++|+||||+|+.+++...- ..+. ...-++.+.......+ ++++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~i-r~~i~~- 99 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVV-RNQIKD- 99 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHH-HTHHHH-
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHH-HHHHHH-
Confidence 678898888888888887542 333789999999999999999873110 1111 1222223222222111 111111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHH---cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchh
Q 015752 265 IPPSRVSVIIGEDYQLKKSILRDY---LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEM 339 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~---L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~ 339 (401)
+.+. +.+.+-++|+|++.. .....+.|...+......+++|++|.... +.....
T Consensus 100 --------------------~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~- 158 (340)
T 1sxj_C 100 --------------------FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL- 158 (340)
T ss_dssp --------------------HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred --------------------HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-
Confidence 1110 123467899999865 45555666655544445667777765442 211110
Q ss_pred CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752 340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.....+.+. ++ +.++..+.+...+
T Consensus 159 sR~~~~~~~------~l--~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 159 SQCTRFRFQ------PL--PQEAIERRIANVL 182 (340)
T ss_dssp TTSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred hhceeEecc------CC--CHHHHHHHHHHHH
Confidence 011223788 89 9999888888776
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=4.8e-05 Score=71.39 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=88.2
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.+++|.+..+++|.+++.. +-.....+.|+|++|+|||+||+.+++ .....| +.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----EhH
Confidence 7899999988888877642 123345788999999999999999998 332222 222 222
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------------chhHHHHHhhCCC--
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------------SEIWIDVEELLPD-- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------------~~~~~~l~~~l~~-- 317 (401)
.+..... +. ....+...+.......+.+|+||++.. . ......+...+..
T Consensus 84 ~l~~~~~----g~---------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 84 ELLTMWF----GE---------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHH----TT---------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHhhhc----Cc---------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 3332221 11 111222223333345679999999863 0 0112334433321
Q ss_pred CCCCcEEEEecCChhHH-hhc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 318 DENGSRVFITVTDPDLL-ASL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 318 ~~~gs~iivTTR~~~v~-~~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
...+..||.||...... ... +.+..... .++ +. +.++-.++|...+..
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~------~p--~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP------LP--DEKSRVAILKANLRK 201 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecC------Cc--CHHHHHHHHHHHHcc
Confidence 22355677777665422 111 00122333 777 77 888888888887743
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=2.2e-05 Score=74.45 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred Cccc-cccc--cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 186 LDIS-HFER--GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 186 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.+|+ |... ....+...+.........+.|+|++|+||||||+.+++. ....-...++++. ..+...+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~ 82 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVE 82 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHH
Confidence 5665 5332 234444444433323457889999999999999999873 3211123345543 233334433
Q ss_pred HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh-------
Q 015752 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--EIWIDVEELLPD-DENGSRVFITVTDP------- 331 (401)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~iivTTR~~------- 331 (401)
.+... ..... .+.+ .+..+|+||++.. .. .....+...+.. ...+..||+||...
T Consensus 83 ~~~~~---------~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 83 HLKKG---------TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHT---------CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHcC---------cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 33211 11111 1222 2367999999966 22 222334333321 12356788877543
Q ss_pred --hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752 332 --DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG 372 (401)
Q Consensus 332 --~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~ 372 (401)
.+...+ ....+ .++ + +.++...++...+.
T Consensus 149 ~~~L~sR~---~~~~~i~l~--------~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 149 SDRLVSRF---EGGILVEIE--------L-DNKTRFKIIKEKLK 180 (324)
T ss_dssp CHHHHHHH---HTSEEEECC--------C-CHHHHHHHHHHHHH
T ss_pred hhHhhhcc---cCceEEEeC--------C-CHHHHHHHHHHHHH
Confidence 122222 11223 666 4 77888888887763
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.99 E-value=1e-05 Score=74.38 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=33.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..+.++.+.+..-......+.|+|.+|+|||+||+.+++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5689999999888877754112224567999999999999999987
No 52
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=3.6e-05 Score=72.52 Aligned_cols=147 Identities=7% Similarity=-0.053 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc-CcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCC
Q 015752 191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN-HVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPS 268 (401)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 268 (401)
-++.++.|...+..+. .....++|++|+||||+|+.+.+.. ..........++..+. ...+.. .+++++.+....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 3455666777666543 6788899999999999999997631 1111122334554432 222222 233444433221
Q ss_pred CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCccee
Q 015752 269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIR 346 (401)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~ 346 (401)
..+++-++|+|++.. .....+.|...+-.....+.+|++|.++ .+...+ ... .++
T Consensus 79 --------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI--~SR-~~~ 135 (305)
T 2gno_A 79 --------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI--KSR-VFR 135 (305)
T ss_dssp --------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH--HTT-SEE
T ss_pred --------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH--Hce-eEe
Confidence 125677899999977 6667777777776656677777776554 343333 133 348
Q ss_pred cccccCCCCCCCChHHHHHHHHHhh
Q 015752 347 LDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 347 l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
+. ++ ++++..+.+.+.+
T Consensus 136 f~------~l--~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VV------VN--VPKEFRDLVKEKI 152 (305)
T ss_dssp EE------CC--CCHHHHHHHHHHH
T ss_pred CC------CC--CHHHHHHHHHHHh
Confidence 99 99 9999999998876
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.93 E-value=4.8e-05 Score=76.38 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.+++|.+..+++|.+++... .....-+.|+|++|+|||+||+.+++ .....| +.++. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------h
Confidence 67899999999988877531 23345688999999999999999987 332222 33331 1
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------c----hhHHHHHhhCCC--CCC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------S----EIWIDVEELLPD--DEN 320 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~----~~~~~l~~~l~~--~~~ 320 (401)
.+...+. ......+...+.....+++.+|+||++.. . . .....|...+.. ...
T Consensus 273 ----~l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ----HHHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ----Hhhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1111111 10233334444444456788999999832 0 0 122333333321 223
Q ss_pred CcEEEEecCChhH-Hhhchh-CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752 321 GSRVFITVTDPDL-LASLEM-ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (401)
Q Consensus 321 gs~iivTTR~~~v-~~~~~~-~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~ 374 (401)
+..||.||..... ...+.. +..... .+. +. +.++-.++|..++...
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~------~P--~~~eR~~IL~~~~~~~ 388 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIG------IP--DATGRLEILQIHTKNM 388 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHTTTS
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeC------CC--CHHHHHHHHHHHHhcC
Confidence 4566666665532 222210 122333 777 77 9999999999887543
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.88 E-value=1.6e-05 Score=74.53 Aligned_cols=134 Identities=10% Similarity=0.092 Sum_probs=72.7
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++ .....-...+.+..+.-.... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHH
Confidence 46789999888888877642 12235789999999999999999987 332211224455544322211 111
Q ss_pred HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 015752 259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFI 326 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iiv 326 (401)
.+ ++...... ... ....+...+.. ...-+|+||++.. +......|...+.... .++.+|.
T Consensus 94 ~l---~g~~~~~~-~~~-~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 94 RL---IGAPPGYV-GYE-EGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HH---HCCCTTST-TTT-TCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred Hh---cCCCCccc-ccc-ccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 22 22111100 000 11122222222 3446999999976 5556666665543221 2344777
Q ss_pred ecCC
Q 015752 327 TVTD 330 (401)
Q Consensus 327 TTR~ 330 (401)
||..
T Consensus 166 ttn~ 169 (311)
T 4fcw_A 166 TSNL 169 (311)
T ss_dssp EEST
T ss_pred eccc
Confidence 7765
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00013 Score=70.89 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=87.4
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.++.+++|.+.+.- +-...+-+.++|++|.|||.||+.+++ .....| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 7788999888888766542 123346678999999999999999998 333333 3333322111
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C--------ch------hHHHHHhhCCC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D--------SE------IWIDVEELLPD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~~------~~~~l~~~l~~- 317 (401)
. +-. +...+...+...-...+++|.||++.. - .. ....+...+..
T Consensus 221 ------------k------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 ------------K------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp ------------S------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ------------c------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0 111 222222222222245789999999965 1 00 12233333321
Q ss_pred -CCCCcEEEEecCChhHHhh--chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752 318 -DENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~ 374 (401)
...+-.||.||..++.... .+-+..+.. .++ .. +.++-.++|..+....
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~------lP--d~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP------PP--SVAARAEILRIHSRKM 335 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC------CC--CHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC------Cc--CHHHHHHHHHHHhcCC
Confidence 2234456667766543211 111233334 777 66 8888889998877543
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.81 E-value=0.00024 Score=64.76 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=34.1
Q ss_pred CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLI---EG-------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++++.+.+. .. .....-+.|+|++|+||||||+.+++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 789999888777665432 11 11234578999999999999999987
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.80 E-value=5.9e-05 Score=75.39 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|++.+++.+...|.... ..-+.|+|++|+|||+||+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997632 23457899999999999999987
No 58
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00026 Score=69.65 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=85.6
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++ .....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 7788998888888776642 123456788999999999999999998 333332 3333332111
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C----------ch----hHHHHHhhCCC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SE----IWIDVEELLPD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~----~~~~l~~~l~~- 317 (401)
. +.. ....+.......-...+++|.+|++.. - .. ....+...+..
T Consensus 254 ------------k------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 ------------K------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp ------------S------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ------------c------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0 111 222222222222245789999999964 0 00 12233333321
Q ss_pred -CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 318 -DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
...+..||.||..++..... +-+..+.. .++ .. +.++-.++|..+...
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~------lP--d~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP------LP--NEAGRLEIFKIHTAK 367 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC------CC--CHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecC------Cc--CHHHHHHHHHHHhcC
Confidence 22345677777765433211 00112222 555 55 777888888777643
No 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.78 E-value=2.9e-05 Score=73.13 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=36.2
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|....+.++.+.+..-......|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 578999999998888765222334567999999999999999987
No 60
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00034 Score=68.96 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=87.6
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++ +....| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh---
Confidence 6788999888888776431 223466788999999999999999998 333333 333332211
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C--------c--h----hHHHHHhhCCC-
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D--------S--E----IWIDVEELLPD- 317 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~--~----~~~~l~~~l~~- 317 (401)
.. +-. ....+...+...-...+++|++|++.. - . . ....+...+..
T Consensus 281 -----------sk------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 281 -----------QK------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -----------CC------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -----------cc------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 11 111 222222222333345789999999964 0 0 0 11222222221
Q ss_pred -CCCCcEEEEecCChhHHh--hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCC
Q 015752 318 -DENGSRVFITVTDPDLLA--SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPL 376 (401)
Q Consensus 318 -~~~gs~iivTTR~~~v~~--~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~ 376 (401)
...+-.||.||...+... ..+-+..+.. .++ .. +.++-.++|..++...+.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~------lP--d~~~R~~Ilk~~l~~~~l 398 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS------LP--DLEGRANIFRIHSKSMSV 398 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC------CC--CHHHHHHHHHHHHTTSCB
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeC------Cc--CHHHHHHHHHHHhcCCCC
Confidence 123445566776554211 1111223344 666 66 888888999888765433
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.71 E-value=0.00042 Score=69.10 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752 186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (401)
.+++|.+..++++.+.+.. . ..-.+-+.|+|++|+|||+||+.+++ .....| +.++.+.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~--- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVE--- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHH---
Confidence 7899998887777665431 1 11223478999999999999999997 332222 2333322111
Q ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--------------hhHHHHHhhCC--CC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--------------EIWIDVEELLP--DD 318 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--------------~~~~~l~~~l~--~~ 318 (401)
.+. ..........+.....+.+.+|+||++.. .. .....+...+. ..
T Consensus 88 -------~~~---------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 88 -------LFV---------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp -------CCT---------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred -------HHh---------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 000 00222233344444456789999999844 10 12233433222 11
Q ss_pred CCCcEEEEecCChhHHh-h-chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 319 ENGSRVFITVTDPDLLA-S-LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 319 ~~gs~iivTTR~~~v~~-~-~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
..+..||.||...+... . .+-+..... .++ +. +.++-.++|..++..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~------~P--d~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVD------PP--DMLGRKKILEIHTRN 201 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecC------CC--CHHHHHHHHHHHHHh
Confidence 23556777777665432 1 110122323 667 66 777777888777643
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=9.3e-05 Score=79.52 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=37.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||+.++.++.+.|.... ..-+.++|++|+|||+||+.+++
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 679999999999999997632 23457899999999999999987
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.62 E-value=8.3e-05 Score=69.45 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=36.5
Q ss_pred CccccccccHHHHHHHHhc------------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE------------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999988887754 012234677999999999999999987
No 64
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=0.00027 Score=62.37 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC------ccccCc--CHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV------SVIIGE--DYQL 280 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~--~~~~ 280 (401)
-.++.|.|.+|+|||||+..+.. ..-..++|+.....++...+. .+....+..... ...... +...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999986 122467888877655655443 333333221000 001111 2234
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC
Q 015752 281 KKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 281 l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
....++..+..+.-+||||.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 55566666655677999999865
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=4.8e-05 Score=69.84 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=35.3
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.+.+.+.. +.....-+.|+|++|+|||+||+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 7899999988888776541 111123367999999999999999988
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00038 Score=68.45 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 8899999998888776432 123456788999999999999999998
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.56 E-value=0.00027 Score=74.95 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=84.8
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++ .....-...+.++.+.-..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~------ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYME------ 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCS------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccc------
Confidence 67899999998888887641 12234788999999999999999987 3222122334454433111
Q ss_pred HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 015752 259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRVFI 326 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~iiv 326 (401)
.. .. ....+...+++ ....+|+||++.. .++....|...+..+ ..+.+||+
T Consensus 563 --------~~-----~~-~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 563 --------KH-----ST-SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp --------SC-----CC-C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred --------cc-----cc-ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 00 00 10111111221 2345899999976 555556665544331 23568888
Q ss_pred ecCC-----hhH----Hhhch---hCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752 327 TVTD-----PDL----LASLE---MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 327 TTR~-----~~v----~~~~~---~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
||.. ..+ ..... ......+ .+. || +.++-..++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~------~l--~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH------SL--EKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC----------CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC------CC--CHHHHHHHHHHHH
Confidence 8873 111 11110 0122234 888 99 9988888776654
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=0.00062 Score=64.73 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=36.0
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.+...+..+ ......+.|+|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 67889887777776666432 23346789999999999999999988
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.0012 Score=69.92 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++||+.++.++.+.|... ...-+.|+|.+|+|||++|+.+++
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999998753 234567999999999999999986
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.001 Score=65.04 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=36.8
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 7888999888888776532 123356788999999999999999998
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.00065 Score=71.94 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|++.+++++...|.... ..-+.++|++|+|||++|+.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997632 23467999999999999999987
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.0001 Score=61.77 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-..++|+|+.|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999873
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.34 E-value=0.0015 Score=68.93 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=87.2
Q ss_pred CccccccccHHHHHHHHhc----C-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIE----G-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.++.+++|.+.+.- . -...+-|.++|++|+|||+||+.+++ ....+| +.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------
Confidence 7788999998888876531 1 13456788999999999999999998 443333 333321
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------ch----hHHHHHhhCCC--CCC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SE----IWIDVEELLPD--DEN 320 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~--~~~ 320 (401)
++..... ......+...+.......+.+|+||++.. - .+ ....|...+.. ...
T Consensus 273 ----~l~sk~~---------gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 273 ----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ----HHHSSCT---------THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred ----Hhhcccc---------hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 1111111 10334444444444456789999999854 1 01 11222222211 112
Q ss_pred CcEEEEecCChh-HHhhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 321 GSRVFITVTDPD-LLASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 321 gs~iivTTR~~~-v~~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
+-.||.||...+ +-..+. .+..... .+. .. +.++-.++|..+...
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~------~P--d~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIG------IP--DATGRLEILQIHTKN 387 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECC------CC--CHHHHHHHHHHTCSS
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecC------CC--CHHHHHHHHHHHhcC
Confidence 334555665543 222221 0122333 666 66 888888888877654
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.32 E-value=0.0075 Score=54.53 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=32.3
Q ss_pred CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..+.++.+.... . -.-.+-+.|+|++|+|||||++.+++
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 7889988776665543321 1 00112288999999999999999997
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.31 E-value=0.0036 Score=57.75 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=32.4
Q ss_pred CccccccccHHHHHHHHhc---C---------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE---G---------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|.++.+++|.+.+.. . ..... +.|+|++|+||||||+.++.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 6788888888877765421 1 11122 89999999999999999987
No 76
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.29 E-value=6e-05 Score=71.07 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=36.7
Q ss_pred Ccccccc----ccHHHHHHHHhcCCC-CceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEc
Q 015752 186 LDISHFE----RGREELFDLLIEGSS-GLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRV 247 (401)
Q Consensus 186 ~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v 247 (401)
.+|++.+ ..++.+.+++..... ....+.|+|++|+|||+||..+++ ... ..-..+.++++
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 5565433 334455556654221 245788999999999999999988 333 22233455544
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.25 E-value=0.0013 Score=62.28 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=84.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI 265 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 265 (401)
..++|.+..++.+...+..+ .-+.++|++|+|||+||+.+.+ .....| ..+..+......++.. ...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g----~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIG----TMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHE----EEE
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCC----cee
Confidence 46899999999888888763 2477899999999999999987 332222 2233333333333221 110
Q ss_pred CCCCCccccCcCHHHHHHHHHHHcCC--ceEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEEecCCh
Q 015752 266 PPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRVFITVTDP 331 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~iivTTR~~ 331 (401)
..... . .. .+..+ ...++++|++.. +......|...+... .....||.|+...
T Consensus 94 ~~~~~----~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 YNQHK----G-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EETTT----T-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ecCCC----C-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000 0 00 00001 135899999976 454445444433211 2234555555522
Q ss_pred h------HHhhchhCCCc-ceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752 332 D------LLASLEMENGE-KIRLDSVLFGGPLIRLKHEAWQFFILHYGS 373 (401)
Q Consensus 332 ~------v~~~~~~~~~~-~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~ 373 (401)
. +..... .... .+.++ ++ +.++-.+++...+..
T Consensus 161 ~~~~~~~l~~~l~-~Rf~~~i~i~------~p--~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQV-DRFMMKIHLT------YL--DKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHH-TTSSEEEECC------CC--CHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHH-hheeEEEEcC------CC--CHHHHHHHHHhcccc
Confidence 1 111110 1223 34788 88 999999999988754
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.18 E-value=0.0012 Score=70.73 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=71.5
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD 258 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 258 (401)
..++|.+..+..+...+... ......+.|+|++|+|||++|+.+.+. ....-...+.++.+.-... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAV- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GGG-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hHH-
Confidence 45799999888888777531 122357889999999999999999872 2111112344444432211 000
Q ss_pred HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752 259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF 325 (401)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii 325 (401)
..+.+.... -... ....+...+.. ...-+|+||++.. ..+....|...+..+. .++.||
T Consensus 634 ---s~l~g~~~~--~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI 705 (854)
T 1qvr_A 634 ---SRLIGAPPG--YVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII 705 (854)
T ss_dssp ---GGC----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred ---HHHcCCCCC--CcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEE
Confidence 111100000 0000 11222222322 2346899999976 5666677777666431 245577
Q ss_pred EecCC
Q 015752 326 ITVTD 330 (401)
Q Consensus 326 vTTR~ 330 (401)
+||..
T Consensus 706 ~tsn~ 710 (854)
T 1qvr_A 706 LTSNL 710 (854)
T ss_dssp EECCT
T ss_pred EecCc
Confidence 77775
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=0.0027 Score=67.66 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=37.9
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..+++|.+++.. .-.....+.|+|++|+||||||+.+++
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 7899999999999888753 112345688999999999999999987
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.12 E-value=0.00095 Score=62.25 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.....+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999998
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.09 E-value=0.00026 Score=66.64 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc--CCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD 287 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (401)
+++.|+|++|+|||+||.++... .-..+.|++. +...+. . ..+.+.....+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~-------~~~le~~l~~i~~ 178 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y-------NTDFNVFVDDIAR 178 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C-------BCCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h-------hcCHHHHHHHHHH
Confidence 56789999999999999999873 2223456666 332110 0 0145566666666
Q ss_pred HcCCceEEEEEeCCCC
Q 015752 288 YLTNKKYFIVLDDVFD 303 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~ 303 (401)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 665555 999999965
No 82
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0015 Score=64.12 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|.++.+++|.+.+.- +-...+-+.++|++|.|||+||+.+++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7889999988888776642 123456688999999999999999998
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.03 E-value=0.0018 Score=68.60 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=36.1
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45889888888887776531 12334788999999999999999987
No 84
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.02 E-value=0.0016 Score=62.48 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~ 286 (401)
.-.++.|.|++|+|||||+..++.. ....-..++|++....++.. .+.+++.......-... +.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3469999999999999999999863 22222357888887777654 44555543221101111 5566666666
Q ss_pred HHcC-CceEEEEEeCCCC
Q 015752 287 DYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~L~-~kr~LlVlDdv~~ 303 (401)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4566999999754
No 85
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.0011 Score=67.26 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.7
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.++....+.+.+.- ..-....+.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5578888777777554431 122456899999999999999999987
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.94 E-value=0.0035 Score=60.39 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=34.5
Q ss_pred CccccccccHHHHHHHHhc----------------------------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE----------------------------GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578888888888776620 011234578999999999999999987
No 87
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.93 E-value=0.00092 Score=57.03 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=36.2
Q ss_pred HHHHHHcCCceEEEEEeCCCC--Cch----------------hHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSE----------------IWIDVEELLPDD-ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~----------------~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 337 (401)
-.+.+.+..++-+++||.-.. |.. ....+...+..- ..|..+|++|.+.+.+..+
T Consensus 92 v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 92 IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 456666778889999998644 232 345556666542 2367788888887766544
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.011 Score=54.26 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++++.+.... . -.-.+-+.|+|++|+|||||++.+++
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 7899988777666554321 1 00112288999999999999999987
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.84 E-value=0.0027 Score=56.24 Aligned_cols=117 Identities=13% Similarity=0.003 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--------c---------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--------V--------- 272 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------~--------- 272 (401)
.+++|.|.+|+|||||++.+.... ...-..+.|+.... ....+...+ ..++...... +
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 588999999999999999998522 11112456665443 344443333 2333221100 0
Q ss_pred -ccCc-CHHHHHHHHHHHcC---CceEEEEEeCCCC----CchhHHHHHhhCCC--CCCCcEEEEecCCh
Q 015752 273 -IIGE-DYQLKKSILRDYLT---NKKYFIVLDDVFD----DSEIWIDVEELLPD--DENGSRVFITVTDP 331 (401)
Q Consensus 273 -~~~~-~~~~l~~~l~~~L~---~kr~LlVlDdv~~----~~~~~~~l~~~l~~--~~~gs~iivTTR~~ 331 (401)
.... +..++...+...+. -++.+||||..-. |......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0011 44555555555442 2334999999862 24333443333321 12477889888876
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.82 E-value=0.012 Score=58.92 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=33.9
Q ss_pred CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLI---EG-------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..+.++.+... .. -.-.+-+.|+|++|+||||||+.+++
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 889999887776665542 11 01122388999999999999999997
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0053 Score=57.60 Aligned_cols=86 Identities=6% Similarity=0.027 Sum_probs=55.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccc--cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHH-HHHHH
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFY--FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLK-KSILR 286 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l-~~~l~ 286 (401)
++.|.|++|+|||||+.+++.. .... -..++|++....++.. .+++++.+....--... +.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888763 2222 2468999988888753 36677665332100111 44454 33333
Q ss_pred HH--c-CCceEEEEEeCCCC
Q 015752 287 DY--L-TNKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~--L-~~kr~LlVlDdv~~ 303 (401)
.. + .++.-|||+|.+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45788999999855
No 92
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.79 E-value=0.0035 Score=60.34 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRD 287 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~ 287 (401)
-.++.|.|.+|+||||||.++... ....-..++|++....++.. .+..++.......-... +.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458889999999999999988763 22222468999988877654 23444433211000111 56666666766
Q ss_pred HcC-CceEEEEEeCCCC
Q 015752 288 YLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 288 ~L~-~kr~LlVlDdv~~ 303 (401)
..+ ++.-+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 664 3456999999854
No 93
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.76 E-value=0.011 Score=52.62 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc------------------CeEEEEEcCC----CCCHH----------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF------------------DCHAWVRVSL----DYDFR---------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------------~~~~wv~vs~----~~~~~---------- 254 (401)
.+++|+|+.|+|||||.+.+..-.... + .| ..+.++.-.. ..++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 489999999999999999986421100 0 00 1133332111 11221
Q ss_pred --------HHHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCC
Q 015752 255 --------RILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENG 321 (401)
Q Consensus 255 --------~~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g 321 (401)
....++++.++........... +. +...-.+...|..++-+++||.--. |...-..+...+..- ..|
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g 190 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 1233455555543221112222 22 2333445556667778999999866 554444444433221 126
Q ss_pred cEEEEecCChhHH
Q 015752 322 SRVFITVTDPDLL 334 (401)
Q Consensus 322 s~iivTTR~~~v~ 334 (401)
..||++|.+.+.+
T Consensus 191 ~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 191 TSIVMVTHERELA 203 (224)
T ss_dssp CEEEEECSCHHHH
T ss_pred CEEEEEcCCHHHH
Confidence 6799999988776
No 94
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.74 E-value=0.0026 Score=63.13 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=35.9
Q ss_pred CccccccccHHHHHH---HHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFD---LLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|.+..++.+.. ++..+....+-+.++|++|+|||+||+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 789999988776544 44443333456889999999999999999983
No 95
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.0058 Score=55.97 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccC-----------eEEEEEcCCCC----CHH--------------HHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFD-----------CHAWVRVSLDY----DFR--------------RIL 257 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~-----------~~~wv~vs~~~----~~~--------------~~~ 257 (401)
.+++|+|+.|+|||||.+.++.-. .. . .|+ .+.| .+.+.+ ++. ...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 478999999999999999997521 10 0 011 1221 122211 221 123
Q ss_pred HHHHHHcCCC-CCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752 258 DDIIKSVIPP-SRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPD 332 (401)
Q Consensus 258 ~~i~~~l~~~-~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 332 (401)
.++++.++.. ......... + -+...-.+...|..++-+++||.--. |...-..+...+..-.. .||++|.+.+
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 4555666544 211112222 2 22233344455556777999999866 55444444444433222 6888888866
Q ss_pred HHhhc
Q 015752 333 LLASL 337 (401)
Q Consensus 333 v~~~~ 337 (401)
.+...
T Consensus 187 ~~~~~ 191 (263)
T 2pjz_A 187 MLNLY 191 (263)
T ss_dssp GGGGC
T ss_pred HHHHh
Confidence 55443
No 96
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.71 E-value=0.0038 Score=59.68 Aligned_cols=89 Identities=16% Similarity=0.059 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~ 286 (401)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .+..++.......-... +.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999998763 22222468899988777643 24445433211100111 4555655555
Q ss_pred HHcC-CceEEEEEeCCCC
Q 015752 287 DYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~L~-~kr~LlVlDdv~~ 303 (401)
.... .+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5554 4567999999844
No 97
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.68 E-value=0.00079 Score=60.23 Aligned_cols=111 Identities=16% Similarity=0.005 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY 288 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (401)
-.++.|.|..|+||||++..+.+ +...+-..++.++-.... . ....++.+++...... ... ...++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~-~~~-~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSV-EVE-SAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCE-EES-STHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcccc-ccC-CHHHHHHHHHHH
Confidence 46888999999999999988776 333332233334322211 1 1123344443321110 111 445566666665
Q ss_pred cCCce-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752 289 LTNKK-YFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT 329 (401)
Q Consensus 289 L~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR 329 (401)
+.+.+ -+||+|.+.. +.+..+.+... .+ .|..||+|-+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L-~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANIL-AE--NGFVVIISGL 124 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEECC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHH-Hh--CCCeEEEEec
Confidence 55444 4999999865 34444444432 22 2678999988
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.0095 Score=54.32 Aligned_cols=128 Identities=9% Similarity=0.078 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc-------------CeEEEEEcCC----CCCHHH--------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF-------------DCHAWVRVSL----DYDFRR-------------- 255 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-------------~~~~wv~vs~----~~~~~~-------------- 255 (401)
.+++|+|+.|+|||||.+.++.-.... + .| ..+.++.-.. ..++.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 589999999999999999997521110 0 00 1123332111 112211
Q ss_pred ----HHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEE
Q 015752 256 ----ILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFI 326 (401)
Q Consensus 256 ----~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iiv 326 (401)
...++++.++........... +. +...-.+...|..++-+++||.--. |+..-..+...+..- ..|..||+
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiii 201 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 123444554443211111222 22 2233344455667778999999866 554444444333221 23677999
Q ss_pred ecCChhHHhhc
Q 015752 327 TVTDPDLLASL 337 (401)
Q Consensus 327 TTR~~~v~~~~ 337 (401)
+|.+.+.+...
T Consensus 202 vtHd~~~~~~~ 212 (256)
T 1vpl_A 202 SSHNMLEVEFL 212 (256)
T ss_dssp EECCHHHHTTT
T ss_pred EcCCHHHHHHH
Confidence 99987776553
No 99
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.66 E-value=0.0053 Score=54.42 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc---------CeEEEEEcCC----CCCHH----------------HHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF---------DCHAWVRVSL----DYDFR----------------RIL 257 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F---------~~~~wv~vs~----~~~~~----------------~~~ 257 (401)
.+++|+|+.|+|||||.+.++.-.... . .| ..+.++.-.. ..++. .-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 478999999999999999997521110 0 01 1133332111 11211 223
Q ss_pred HHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752 258 DDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD 332 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~ 332 (401)
.++++.++.... ...... + -+...-.+...|..++-+++||.--. |+..-..+...+..- ..|..||++|.+..
T Consensus 116 ~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 116 MDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445555554432 112222 2 23333445556667788999999866 544444444333221 12556888887755
Q ss_pred HH
Q 015752 333 LL 334 (401)
Q Consensus 333 v~ 334 (401)
.+
T Consensus 195 ~~ 196 (214)
T 1sgw_A 195 SY 196 (214)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.016 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 101
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.65 E-value=0.0048 Score=58.33 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC----c--cccCc--
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV----S--VIIGE-- 276 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~--~~~~~-- 276 (401)
-.++.|.|.+|+||||||.+++........ -..++|++....++...+. .++..++..... . ....+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 458999999999999999998864222211 2478999988887766654 345555443210 0 00111
Q ss_pred CHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 015752 277 DYQLKKSILRDYLT--NKKYFIVLDDVFD 303 (401)
Q Consensus 277 ~~~~l~~~l~~~L~--~kr~LlVlDdv~~ 303 (401)
...++...+...+. .+.-+||+|.+-.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 12234555555553 4677999999854
No 102
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0067 Score=54.13 Aligned_cols=94 Identities=5% Similarity=-0.029 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCC---Cc-cccCc-CHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSR---VS-VIIGE-DYQ 279 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~-~~~ 279 (401)
-.++.|+|++|+|||||+..+........ .-..++|+.....+....+ ..++..++.... +. .-... +..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999886322211 1257888887776555443 234444443210 00 00011 222
Q ss_pred ---HHHHHHHHHcC-CceEEEEEeCCCC
Q 015752 280 ---LKKSILRDYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 280 ---~l~~~l~~~L~-~kr~LlVlDdv~~ 303 (401)
.....+.+.+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 23334555553 4678999999865
No 103
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.61 E-value=0.027 Score=50.32 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.4
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhh-CCCCCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEEL-LPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~-l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.+.+.|-.++-+++||.--. |...-..+... +.....|..||++|.+.+.+..+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~ 196 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC
Confidence 34444556677899999876 66666677664 33333466788899987765433
No 104
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.61 E-value=0.011 Score=53.13 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCC---CCCCCcEEEEecCChhHHh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLP---DDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~---~~~~gs~iivTTR~~~v~~ 335 (401)
.+.+.|..++-+++||.--. |+..-..+...+. ....|..||++|.+.+.+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 33444455667889999866 6665566666662 2224667888888766544
No 105
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.59 E-value=0.011 Score=56.44 Aligned_cols=96 Identities=6% Similarity=-0.003 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC---c---cccC-
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV---S---VIIG- 275 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~---~~~~- 275 (401)
..-.++.|.|.+|+||||||..++....... .-..++|++....++...+. .++..++..... . ....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 3456899999999999999999886422211 22478899988887766654 344555432110 0 0011
Q ss_pred c-CHHHHHHHHHHHcC---CceEEEEEeCCCC
Q 015752 276 E-DYQLKKSILRDYLT---NKKYFIVLDDVFD 303 (401)
Q Consensus 276 ~-~~~~l~~~l~~~L~---~kr~LlVlDdv~~ 303 (401)
. ....+...+.+.+. .+.-+||+|.+-.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 22234444455543 5667999999854
No 106
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.56 E-value=0.0058 Score=55.19 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc------------CeEEEEEcC----CCCCH----------------H
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF------------DCHAWVRVS----LDYDF----------------R 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~vs----~~~~~----------------~ 254 (401)
.+++|+|+.|+|||||.+.+..-.... + .| ..+.++.-. ...++ .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 689999999999999999996521100 0 00 011111100 00011 1
Q ss_pred HHHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEec
Q 015752 255 RILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITV 328 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTT 328 (401)
+-..++++.++........... +. +...-.+...|..++=+++||.--. |+..-..+...+..- ..|..||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2344566666554221112222 22 2233345555667778999999866 554444444433321 1255688888
Q ss_pred CChhHHhh
Q 015752 329 TDPDLLAS 336 (401)
Q Consensus 329 R~~~v~~~ 336 (401)
.+.+.+..
T Consensus 185 Hd~~~~~~ 192 (240)
T 2onk_A 185 HDLIEAAM 192 (240)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 88765444
No 107
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.54 E-value=0.014 Score=53.43 Aligned_cols=128 Identities=16% Similarity=0.060 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc--------------CeEEEEEcCC----CC----------------C
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF--------------DCHAWVRVSL----DY----------------D 252 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F--------------~~~~wv~vs~----~~----------------~ 252 (401)
.+++|+|+.|+|||||.+.+..-.... + .| ..+.++.-.. .. .
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 589999999999999999996521100 0 00 0122221100 11 1
Q ss_pred HHHHHHHHHHHcCCCCCCccccCc---CHHHHHHHHHHHcC-----CceEEEEEeCCCC--CchhHHHHHhhCCCC--CC
Q 015752 253 FRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSILRDYLT-----NKKYFIVLDDVFD--DSEIWIDVEELLPDD--EN 320 (401)
Q Consensus 253 ~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~l~~~L~-----~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~ 320 (401)
......++++.++........... ...+.....+..+. .++-+|+||.--. |+..-..+...+..- ..
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~ 197 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 233445666666554322112222 33333333333333 2788999999866 544444444433321 23
Q ss_pred CcEEEEecCChhHHhhc
Q 015752 321 GSRVFITVTDPDLLASL 337 (401)
Q Consensus 321 gs~iivTTR~~~v~~~~ 337 (401)
+..||++|.+.+.+...
T Consensus 198 ~~tvi~vtHdl~~~~~~ 214 (266)
T 4g1u_C 198 PLAVCCVLHDLNLAALY 214 (266)
T ss_dssp SEEEEEECSCHHHHHHH
T ss_pred CCEEEEEEcCHHHHHHh
Confidence 55788888887766543
No 108
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.51 E-value=0.011 Score=53.86 Aligned_cols=127 Identities=14% Similarity=0.120 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc---cCeEEEEEcCC----CCCH----------------------HHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY---FDCHAWVRVSL----DYDF----------------------RRILDD 259 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~---F~~~~wv~vs~----~~~~----------------------~~~~~~ 259 (401)
.+++|+|+.|+|||||.+.++.-.... +. ...+.++.-.. ..++ .....+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 479999999999999999997632110 00 01222331100 0111 122344
Q ss_pred HHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhH
Q 015752 260 IIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDL 333 (401)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v 333 (401)
+++.++........... +. +...-.+...|..++=+++||.--. |...-..+...+..- ..|..||++|.+.+.
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 55555443211111222 22 2223334445556677999999866 554444444433321 226678888988776
Q ss_pred Hhh
Q 015752 334 LAS 336 (401)
Q Consensus 334 ~~~ 336 (401)
+..
T Consensus 192 ~~~ 194 (253)
T 2nq2_C 192 VVA 194 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 109
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.50 E-value=0.013 Score=52.56 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=33.8
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA 335 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 335 (401)
-.+.+.|..++=+|+||.--. |+..-..+...+..- ..|..||++|.+.+++.
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 344455566777899999866 544444444444321 22677999999988764
No 110
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.50 E-value=0.0053 Score=58.82 Aligned_cols=89 Identities=12% Similarity=-0.024 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~ 286 (401)
.-.++.|.|.+|+||||||.++... ....-..++|++....++... +..++.......-... +.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999998763 222223688999888776432 3445433211100111 4455555554
Q ss_pred HHcC-CceEEEEEeCCCC
Q 015752 287 DYLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~L~-~kr~LlVlDdv~~ 303 (401)
...+ .+.-+||+|.+-.
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 4432 4556999999743
No 111
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.50 E-value=0.009 Score=54.25 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999875
No 112
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.48 E-value=0.017 Score=52.79 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++=+|+||.--. |+..-..+...+.. ...|..||++|.+.+.+...
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 225 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 225 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 44555666777999999866 54443444433322 12266799999987766543
No 113
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.46 E-value=0.0075 Score=56.76 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCccc---------cc-----CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC---
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF---------YF-----DCHAWVRVSLDYDFRRILDDIIKSVIPPSRV--- 270 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--- 270 (401)
.-.++.|.|.+|+|||+||.+++....... .. ..++|++....++...+.+ ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999999876422211 11 4788999888877766553 44555443110
Q ss_pred c---cccCc--CHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 015752 271 S---VIIGE--DYQLKKSILRDYLT--NKKYFIVLDDVFD 303 (401)
Q Consensus 271 ~---~~~~~--~~~~l~~~l~~~L~--~kr~LlVlDdv~~ 303 (401)
. ....+ ...++...+.+.+. .+.-+||+|.+-.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0 01111 22234555666554 4567999999843
No 114
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.42 E-value=0.0027 Score=55.47 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=32.5
Q ss_pred ccccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 191 FERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 191 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
|++.++++.+.+... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677788877653 34567999999999999999998876
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.40 E-value=0.0021 Score=56.50 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=28.5
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+.+........+++|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555543334567999999999999999999876
No 116
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.39 E-value=0.038 Score=50.54 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...|..++-+|+||.--. |...-..+...+..- ..|..||++|.+...+..
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 33444556677899999876 555444444443321 246779999998776544
No 117
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.30 E-value=0.021 Score=52.41 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.|.+.|-.++-+|+||.--. |...-..+...+..- ..|..||++|.+...+..
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 34455566777999999866 554444444443322 236678888888776543
No 118
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.26 E-value=0.015 Score=53.33 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
-.+...|..++-+++||.--. |...-..+...+..- ..|..||++|.+.+.+..
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN 203 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 344555667778999999866 554444444443321 126678888888665544
No 119
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.26 E-value=0.011 Score=54.41 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752 282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 336 (401)
.-.|...|..++=+|+||.--. |+..-..+...+..- ..|..||++|.+.+.+..
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL 209 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence 3445556667788999999866 544434444333321 126678888877665544
No 120
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.031 Score=52.47 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
.-.++.|.|.+|+||||||..++.+....+ ..++|++.. .+...+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346888999999999999999876432222 567888765 3445555555443
No 121
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.19 E-value=0.0075 Score=52.51 Aligned_cols=120 Identities=15% Similarity=0.004 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC---CCCCHHHHHHHHHHH---cCC--CCCCccccC--c-CH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS---LDYDFRRILDDIIKS---VIP--PSRVSVIIG--E-DY 278 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~~~~~~~~~i~~~---l~~--~~~~~~~~~--~-~~ 278 (401)
..|-|++..|.||||+|-.+.- +.-.+=-.+.++..- .......++..+--. .+. .... +... . ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~-~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWET-QNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCG-GGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCC-CCcHHHHHHH
Confidence 3455666677999999977654 222222233444322 233344444333100 000 0000 0000 0 22
Q ss_pred HHHHHHHHHHcCCc-eEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752 279 QLKKSILRDYLTNK-KYFIVLDDVFD----DSEIWIDVEELLPDDENGSRVFITVTDPD 332 (401)
Q Consensus 279 ~~l~~~l~~~L~~k-r~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 332 (401)
.......++.+.+. -=|||||++-. .--..+.+...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 33444555566554 45999999832 11222445555544455678999999864
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.19 E-value=0.0023 Score=53.78 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc-----Cc-CHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII-----GE-DYQLKKS 283 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-----~~-~~~~l~~ 283 (401)
.+|+|.|++|+||||+|+.+ . .. .|. ++. ..+++...+..-+......... .. .......
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~--~~--g~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K--ER--GAK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H--HT--TCE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-H--HC--CCc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence 47899999999999999999 4 22 111 222 2344444443322110000000 00 0112233
Q ss_pred HHHHHc-CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYL-TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.+.+.+ ....-.+|+|++.. ...++.+...+. .+...|.+.+-.+......
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~-~~~~~~l~~~~~--~~~~~i~l~~~~~~~~~R~ 119 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRS-LAEVEEFKRLLG--DSVYIVAVHSPPKIRYKRM 119 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCC-HHHHHHHHHHHC--SCEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCC-HHHHHHHHHHhC--CCcEEEEEECCHHHHHHHH
Confidence 344455 23445688999966 666666665543 1223444444444333333
No 123
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.19 E-value=0.022 Score=54.55 Aligned_cols=128 Identities=11% Similarity=0.117 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc-----------------CeEEEEEcCC----CCCHH-----------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF-----------------DCHAWVRVSL----DYDFR----------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-----------------~~~~wv~vs~----~~~~~----------- 254 (401)
.+++|+|+.|+|||||.+.+..-..... .| ..+.++.-.. ..++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999865211100 00 1123332111 11211
Q ss_pred -------HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 015752 255 -------RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENG 321 (401)
Q Consensus 255 -------~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g 321 (401)
+...++++.++..........+ .-+...-.|.+.|..++=+|++|.--+ |+..-..+...+.. ...|
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g 214 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 1234455555543221111222 223334455666777888999999866 54444444444332 1236
Q ss_pred cEEEEecCChhHHhhc
Q 015752 322 SRVFITVTDPDLLASL 337 (401)
Q Consensus 322 s~iivTTR~~~v~~~~ 337 (401)
..||++|.+.+++..+
T Consensus 215 ~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 215 LTILLITHEMDVVKRI 230 (366)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred CEEEEEecCHHHHHHh
Confidence 7788899988776554
No 124
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.18 E-value=0.014 Score=51.33 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=43.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc----cccCc-CHHHHHHHH
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS----VIIGE-DYQLKKSIL 285 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~----~~~~~-~~~~l~~~l 285 (401)
+|.|.|++|+||||+|+.+.. +|.. ..++ ..+++++-+..-+.-.... ..-.- ..+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~------~~g~-~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK------EKGF-VHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------HHCC-EEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH------HHCC-eEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 678999999999999999987 2321 2232 2233332222100000000 00001 445667777
Q ss_pred HHHcCCceEEEEEeCCCC
Q 015752 286 RDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 286 ~~~L~~kr~LlVlDdv~~ 303 (401)
.+.+..... +|||+.-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 888865444 68999855
No 125
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.18 E-value=0.015 Score=55.44 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---ccC------------eEEEEEcCC----CCCHH---------------H
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD------------CHAWVRVSL----DYDFR---------------R 255 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~----~~~~~---------------~ 255 (401)
.+++|+|+.|+|||||.+.++.-..... .|+ .+.++.-.. ..++. .
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5899999999999999999975211100 011 122221110 11221 2
Q ss_pred HHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecC
Q 015752 256 ILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVT 329 (401)
Q Consensus 256 ~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR 329 (401)
-..++++.++..........+ .-+...-.|.+.|..++-+|+||.--+ |...-..+...+.. ...|..||++|.
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 234556666544221112222 223333455566777888999999766 54433334333322 123667888888
Q ss_pred ChhHHhhc
Q 015752 330 DPDLLASL 337 (401)
Q Consensus 330 ~~~v~~~~ 337 (401)
+...+..+
T Consensus 187 d~~~~~~~ 194 (348)
T 3d31_A 187 DQTEARIM 194 (348)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 87655443
No 126
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.026 Score=49.99 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.16 E-value=0.00093 Score=64.15 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c-ccCcCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V-IIGEDYQLKKSILRD 287 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~l~~ 287 (401)
.+++|+|+.|+|||||.+.+.. .+.......+ +++..+.... ........ + ............+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHHH
Confidence 4899999999999999998876 2222212222 2222221100 00000000 0 000011234457888
Q ss_pred HcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 288 YLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 288 ~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
.|...+=+|++|.+.+ .+.++.+.... ..|..||+||...+.+..
T Consensus 192 aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 192 ALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred HhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 8888999999999987 77777655542 236668999988776543
No 128
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.16 E-value=0.016 Score=55.44 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcC----CCCCHH----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVS----LDYDFR---------------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs----~~~~~~---------------- 254 (401)
.+++|+|+.|+|||||.+.++.-..... .| ..+.++.-. ...++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5899999999999999999864211100 00 122333211 111211
Q ss_pred --HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752 255 --RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI 326 (401)
Q Consensus 255 --~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv 326 (401)
+-..++++.++..........+ .-+...-.|.+.|..++=+|+||.--+ |...-..+...+..- ..|..||+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2234555555543211111222 222333445556667778999999866 544333343333221 12567888
Q ss_pred ecCChhHHhhc
Q 015752 327 TVTDPDLLASL 337 (401)
Q Consensus 327 TTR~~~v~~~~ 337 (401)
+|.+...+..+
T Consensus 202 vTHd~~~a~~~ 212 (355)
T 1z47_A 202 VTHDQEEALEV 212 (355)
T ss_dssp ECSCHHHHHHH
T ss_pred ECCCHHHHHHh
Confidence 88987766554
No 129
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.13 E-value=0.0025 Score=54.22 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 130
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.065 Score=49.82 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL 285 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l 285 (401)
...+++|+|.+|+||||++..+..-...... ..+..+.... .....+.+.......+... ... +...+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHHH
Confidence 3569999999999999999998762221111 1344444322 2333333444333333221 111 334444444
Q ss_pred HHHcCCceEEEEEeCC
Q 015752 286 RDYLTNKKYFIVLDDV 301 (401)
Q Consensus 286 ~~~L~~kr~LlVlDdv 301 (401)
.. + .+.=++++|-.
T Consensus 178 ~~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 178 EL-F-SEYDHVFVDTA 191 (296)
T ss_dssp HH-G-GGSSEEEEECC
T ss_pred HH-h-cCCCEEEEeCC
Confidence 43 3 44457888843
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.08 E-value=0.0028 Score=53.40 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 132
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.05 E-value=0.055 Score=50.14 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=35.2
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhC-CCCCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELL-PDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l-~~~~~gs~iivTTR~~~v~~~~ 337 (401)
.+.+.|..++=+++||.--. |...-..+...+ .....|..||++|.+...+..+
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~ 225 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 225 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC
Confidence 34444556677899999866 666666676643 2323467788999987766443
No 133
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.04 E-value=0.044 Score=51.84 Aligned_cols=136 Identities=10% Similarity=-0.012 Sum_probs=81.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcC
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGED 277 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 277 (401)
+.+.|. + .-..+..++|..|.||++.+..+.+... ...|+....+.+....++.++
T Consensus 9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l--------------------- 64 (343)
T 1jr3_D 9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI--------------------- 64 (343)
T ss_dssp HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH---------------------
T ss_pred HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH---------------------
Confidence 444444 2 3456888999999999999988876211 123432222233333333333
Q ss_pred HHHHHHHHHHH-cCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC-------hhHHhhchhCCCcce-e
Q 015752 278 YQLKKSILRDY-LTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTD-------PDLLASLEMENGEKI-R 346 (401)
Q Consensus 278 ~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~-------~~v~~~~~~~~~~~~-~ 346 (401)
.+.+... +-+++-++|+|++.. ....++.|...+.+...++.+|++|.. ..+...+ .....+ +
T Consensus 65 ----~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i--~sr~~~~~ 138 (343)
T 1jr3_D 65 ----FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTAL--ANRSVQVT 138 (343)
T ss_dssp ----HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHH--TTTCEEEE
T ss_pred ----HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHH--HhCceEEE
Confidence 2222211 235667888898743 367788888888766667777766543 2344443 133344 8
Q ss_pred cccccCCCCCCCChHHHHHHHHHhh
Q 015752 347 LDSVLFGGPLIRLKHEAWQFFILHY 371 (401)
Q Consensus 347 l~~~~~~~~L~~~~~ea~~Lf~~~a 371 (401)
.. ++ +.++-...+.+.+
T Consensus 139 ~~------~l--~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 139 CQ------TP--EQAQLPRWVAARA 155 (343)
T ss_dssp EC------CC--CTTHHHHHHHHHH
T ss_pred ee------CC--CHHHHHHHHHHHH
Confidence 88 88 9888888877776
No 134
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.98 E-value=0.025 Score=53.90 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCccccc----CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-------cccCc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYF----DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-------VIIGE 276 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 276 (401)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..++...+...... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999998632111111 24588887665544333 33444433221000 00111
Q ss_pred -CHHHHHHHHHHHcC------CceEEEEEeCCCC
Q 015752 277 -DYQLKKSILRDYLT------NKKYFIVLDDVFD 303 (401)
Q Consensus 277 -~~~~l~~~l~~~L~------~kr~LlVlDdv~~ 303 (401)
...++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 23344455555553 4678999999865
No 135
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.97 E-value=0.026 Score=54.05 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCHH----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDFR---------------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~~---------------- 254 (401)
.+++|+|+.|+|||||.+.++.-..... .| ..+.++.-.. ..++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 5889999999999999999865211100 00 1123332111 11111
Q ss_pred --HHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752 255 --RILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI 326 (401)
Q Consensus 255 --~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv 326 (401)
.-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+ |...-..+...+..- ..|..||+
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1234556666554221112222 2 23333445566667778999999755 443333333333221 12567888
Q ss_pred ecCChhHHhhc
Q 015752 327 TVTDPDLLASL 337 (401)
Q Consensus 327 TTR~~~v~~~~ 337 (401)
+|.+...+..+
T Consensus 190 vTHd~~~a~~~ 200 (362)
T 2it1_A 190 VTHDQAEALAM 200 (362)
T ss_dssp EESCHHHHHHH
T ss_pred ECCCHHHHHHh
Confidence 88887665443
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.95 E-value=0.007 Score=56.30 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 205 GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
......+|+|.|..|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998876
No 137
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.93 E-value=0.004 Score=52.83 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.92 E-value=0.0047 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.91 E-value=0.0048 Score=59.12 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=35.0
Q ss_pred ccccccccHHHHHHHHh-------------cCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 187 DISHFERGREELFDLLI-------------EGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46898888888888773 1111345688999999999999999987
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.85 E-value=0.0043 Score=54.06 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 141
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.82 E-value=0.029 Score=53.64 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCHH----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDFR---------------- 254 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~~---------------- 254 (401)
.+++|+|+.|+|||||.+.++.-..... .| ..+.++.-.. ..++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 5889999999999999999965211100 00 1123331110 11111
Q ss_pred --HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752 255 --RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI 326 (401)
Q Consensus 255 --~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv 326 (401)
.-..++++.++..........+ .-+...-.|.+.|..++-+|+||.--+ |...-..+...+..- ..|..||+
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 (359)
T ss_dssp TTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1234556666543211111222 222333445556667778999999866 543333333333221 12567888
Q ss_pred ecCChhHHhhc
Q 015752 327 TVTDPDLLASL 337 (401)
Q Consensus 327 TTR~~~v~~~~ 337 (401)
+|.+.+.+..+
T Consensus 190 vTHd~~~~~~~ 200 (359)
T 2yyz_A 190 VTHDQAEAMTM 200 (359)
T ss_dssp EESCHHHHHHH
T ss_pred EcCCHHHHHHh
Confidence 88887766543
No 142
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.77 E-value=0.029 Score=53.92 Aligned_cols=127 Identities=9% Similarity=0.070 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcC----CC---------------CCH--
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVS----LD---------------YDF-- 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs----~~---------------~~~-- 253 (401)
.+++|+|+.|+|||||.+.++.-..... .| ..+.++.-. .. ...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 5889999999999999999864211000 00 012222100 00 011
Q ss_pred -HHHHHHHHHHcCCCCCCc---cccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEE
Q 015752 254 -RRILDDIIKSVIPPSRVS---VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVF 325 (401)
Q Consensus 254 -~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~ii 325 (401)
..-..++++.++...... ...+....+. -.|.+.|..++-+|+||.--+ |...-..+...+..- ..|..||
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR-valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 196 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQR-VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHH-HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHcCChhHhcCChhhCCHHHHHH-HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 123455666665432111 1122133333 344555666777899999766 544333343333221 1256788
Q ss_pred EecCChhHHhhc
Q 015752 326 ITVTDPDLLASL 337 (401)
Q Consensus 326 vTTR~~~v~~~~ 337 (401)
++|.+...+..+
T Consensus 197 ~vTHd~~~a~~~ 208 (372)
T 1v43_A 197 YVTHDQVEAMTM 208 (372)
T ss_dssp EEESCHHHHHHH
T ss_pred EEeCCHHHHHHh
Confidence 888887765443
No 143
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.75 E-value=0.0052 Score=52.66 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.74 E-value=0.028 Score=54.62 Aligned_cols=94 Identities=9% Similarity=-0.008 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc--
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE-- 276 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~-- 276 (401)
-.++.|+|.+|+|||||+..++-...... .-..++|+.....+....+ ..++..++...... .....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 35899999999999999997753212211 2346888887776665543 33556555431100 00011
Q ss_pred CHHHHHHHHHHHc-CCceEEEEEeCCCC
Q 015752 277 DYQLKKSILRDYL-TNKKYFIVLDDVFD 303 (401)
Q Consensus 277 ~~~~l~~~l~~~L-~~kr~LlVlDdv~~ 303 (401)
........+.+.+ ..+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1122333333433 24678999999744
No 145
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.73 E-value=0.19 Score=49.33 Aligned_cols=62 Identities=19% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS 263 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 263 (401)
|-+.+ .+=..-.++.|.|.+|+||||||..++.+..... =..++|++... +...+...++..
T Consensus 190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHH
Confidence 43444 4433446888999999999999999886432211 13577776653 445565555543
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.72 E-value=0.004 Score=52.60 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 147
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.71 E-value=0.0061 Score=52.36 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 148
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.70 E-value=0.029 Score=54.03 Aligned_cols=128 Identities=10% Similarity=0.111 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCH-----------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDF----------------- 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~----------------- 253 (401)
.+++|+|+.|+|||||.+.+..-..... .| ..+.+|.-.. ..++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5889999999999999999965211100 00 1122331111 1111
Q ss_pred -HHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752 254 -RRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI 326 (401)
Q Consensus 254 -~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv 326 (401)
.+-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+ |...-..+...+..- ..|..||+
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~ 189 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 12344555555543211111222 2 22222334444555667899999766 544334444333321 22667888
Q ss_pred ecCChhHHhhc
Q 015752 327 TVTDPDLLASL 337 (401)
Q Consensus 327 TTR~~~v~~~~ 337 (401)
+|.+...+..+
T Consensus 190 vTHd~~ea~~~ 200 (381)
T 3rlf_A 190 VTHDQVEAMTL 200 (381)
T ss_dssp ECSCHHHHHHH
T ss_pred EECCHHHHHHh
Confidence 88887665544
No 149
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.69 E-value=0.032 Score=54.75 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.69 E-value=0.0074 Score=51.10 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.66 E-value=0.0053 Score=52.57 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 152
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.66 E-value=0.0072 Score=54.55 Aligned_cols=38 Identities=16% Similarity=-0.092 Sum_probs=27.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.++...+.........|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444433234567899999999999999999976
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.65 E-value=0.0066 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 154
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.65 E-value=0.0054 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.63 E-value=0.021 Score=53.46 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999999886
No 156
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.58 E-value=0.011 Score=59.12 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=35.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.+...+..+ .-+.|+|++|+|||+||+.+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 35789999998888887753 3577999999999999999998
No 157
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.58 E-value=0.0068 Score=54.94 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.0062 Score=52.15 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 159
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.54 E-value=0.043 Score=52.36 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc-----------------CeEEEEEcCC----CCCH------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF-----------------DCHAWVRVSL----DYDF------------ 253 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-----------------~~~~wv~vs~----~~~~------------ 253 (401)
.+++|+|+.|+|||||.+.++.-.... . .| ..+.++.-.. ..++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999986421100 0 01 1123332111 1111
Q ss_pred ------HHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCC
Q 015752 254 ------RRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENG 321 (401)
Q Consensus 254 ------~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~g 321 (401)
.+-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+ |...-..+...+..- ..|
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 191 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12344566666543211111222 2 22333445566667788999999766 544434444333221 225
Q ss_pred cEEEEecCChhHHhhc
Q 015752 322 SRVFITVTDPDLLASL 337 (401)
Q Consensus 322 s~iivTTR~~~v~~~~ 337 (401)
..||++|.+.+.+..+
T Consensus 192 ~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 192 VTLLVVSHDPADIFAI 207 (353)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHh
Confidence 6788888887765544
No 160
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0053 Score=53.20 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.005 Score=53.64 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.52 E-value=0.013 Score=54.32 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 163
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.50 E-value=0.0086 Score=57.31 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc---cc----------------CeEEEEEcCC----CCC--------------
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF----------------DCHAWVRVSL----DYD-------------- 252 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F----------------~~~~wv~vs~----~~~-------------- 252 (401)
.+++|+|+.|+|||||.+.++.-..... .| ..+.++.-.. ..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999965211100 01 1122221100 011
Q ss_pred ----HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCc
Q 015752 253 ----FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGS 322 (401)
Q Consensus 253 ----~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs 322 (401)
...-..++++.++..........+ .-+...-.|.+.|..++-+|+||.--+ |...-..+...+.. ...|.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~ 190 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 122345556665543221111222 223333445555667778999999766 54333333322211 12367
Q ss_pred EEEEecCChhHHhhc
Q 015752 323 RVFITVTDPDLLASL 337 (401)
Q Consensus 323 ~iivTTR~~~v~~~~ 337 (401)
.||++|.+...+..+
T Consensus 191 tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 191 SAVFVSHDREEALQY 205 (359)
T ss_dssp EEEEECCCHHHHHHH
T ss_pred EEEEEeCCHHHHHHH
Confidence 788888887766554
No 164
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0081 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 165
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.49 E-value=0.045 Score=53.78 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|.+|+||||++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.48 E-value=0.0087 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|.|++|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999986
No 167
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.47 E-value=0.0072 Score=57.20 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 779998886665544443221 223789999999999999999873
No 168
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.46 E-value=0.0069 Score=52.44 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.45 E-value=0.018 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.43 E-value=0.0079 Score=51.77 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0081 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.43 E-value=0.0077 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 173
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.39 E-value=0.0077 Score=50.68 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|.|++|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.39 E-value=0.008 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 175
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.36 E-value=0.007 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.36 E-value=0.0091 Score=51.27 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.35 E-value=0.0089 Score=54.49 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 178
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.01 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|++|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 179
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.35 E-value=0.048 Score=55.11 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.32 E-value=0.0092 Score=52.38 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 181
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.32 E-value=0.0087 Score=54.39 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 182
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.32 E-value=0.0082 Score=52.21 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 183
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.31 E-value=0.0076 Score=52.66 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999986
No 184
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.0096 Score=51.69 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++|+|+.|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.28 E-value=0.01 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.28 E-value=0.0097 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.28 E-value=0.057 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998876
No 188
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.27 E-value=0.0071 Score=51.31 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999986
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.27 E-value=0.0072 Score=58.22 Aligned_cols=54 Identities=9% Similarity=-0.111 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEcCCCCC
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSLDYD 252 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~ 252 (401)
++++.+..-. .-..++|+|.+|+|||||++.+.+....+ ..+. ++++-+++...
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH
Confidence 4555555422 23478899999999999999887621111 1222 44566777653
No 190
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.0097 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|+|.|++|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 191
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.25 E-value=0.015 Score=55.49 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.6
Q ss_pred ccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 189 SHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
|..+.-.+++++.+.. ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444555666666642 233456788999999999999998876
No 192
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.23 E-value=0.065 Score=51.53 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
-.|.+.|..++-+|+||.--+ |...-..+...+..- ..|..||++|.+...+..+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM 206 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 344555566777999999766 543333333333221 1256788888887766544
No 193
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.22 E-value=0.09 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...++|.++|.+|+||||++.++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988875
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.22 E-value=0.011 Score=51.59 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 195
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.22 E-value=0.0093 Score=52.73 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 196
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.20 E-value=0.0072 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 197
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.082 Score=54.23 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35899999999999999999865
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.19 E-value=0.06 Score=51.03 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
.-.++.|.|.+|+||||||..++.+... .=..++|++.. .+...+...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 3458889999999999999998874322 22356777654 345555555544
No 199
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.19 E-value=0.0072 Score=51.63 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999976
No 200
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.18 E-value=0.011 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999976
No 201
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.17 E-value=0.087 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998876
No 202
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.16 E-value=0.0096 Score=51.33 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 203
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.15 E-value=0.011 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 204
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.14 E-value=0.083 Score=54.19 Aligned_cols=128 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC-eEEEEEcCC----CCCHHHH--------------HHHHHHHcCCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD-CHAWVRVSL----DYDFRRI--------------LDDIIKSVIPP 267 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~-~~~wv~vs~----~~~~~~~--------------~~~i~~~l~~~ 267 (401)
.+++|+|+.|+|||||.+.++.-.... .. +. .+.++.-.. ..++.+. ..++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 589999999999999999998632111 11 11 233432111 1223222 22344444443
Q ss_pred CCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 268 SRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 268 ~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
......... +. +...-.|...|..++-+++||.--. |...-..+...+..- ..|..||++|.+...+...
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 221112333 33 3333455566777788999999766 544434444333221 2356788888887776654
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.14 E-value=0.012 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 206
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.13 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 207
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.13 E-value=0.0085 Score=51.53 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 208
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.13 E-value=0.014 Score=52.91 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=26.9
Q ss_pred HHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 195 REELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 195 ~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.+...+..+ .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444432 33457899999999999999999976
No 209
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.12 E-value=0.012 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++.+||+|.|-||+||||.+..+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999998877754
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.11 E-value=0.016 Score=54.60 Aligned_cols=43 Identities=7% Similarity=-0.054 Sum_probs=30.3
Q ss_pred ccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 189 SHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|-...+..+...+... .....+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444454444443 34567999999999999999998865
No 211
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.10 E-value=0.011 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 212
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.10 E-value=0.011 Score=49.61 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.09 E-value=0.011 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 214
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.09 E-value=0.0087 Score=50.41 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 215
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.081 Score=54.25 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccc--c-C-eEEEEEcC--CC--CCHH--------------HHHHHHHHHcCCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFY--F-D-CHAWVRVS--LD--YDFR--------------RILDDIIKSVIPP 267 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F-~-~~~wv~vs--~~--~~~~--------------~~~~~i~~~l~~~ 267 (401)
.+++|+|+.|+|||||++.++.-...... . . .+.++.-. .. .++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 57999999999999999999753211110 0 0 12222110 00 1121 2233444444433
Q ss_pred CCCccccCc-CHH-HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752 268 SRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 268 ~~~~~~~~~-~~~-~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~ 337 (401)
......... +.. ...-.|.+.|..++=+|+||.--. |...-..+...+.. ...|..||++|.+...+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 221112333 333 334456667788888999999765 54433333333322 12356788888887766554
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.06 E-value=0.025 Score=48.60 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 217
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.98 E-value=0.013 Score=51.13 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 218
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.98 E-value=0.058 Score=54.58 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC-eEEEEEcCC----CCCHHHHHHHH--------------HHHcCCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD-CHAWVRVSL----DYDFRRILDDI--------------IKSVIPP 267 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~-~~~wv~vs~----~~~~~~~~~~i--------------~~~l~~~ 267 (401)
.+++|+|+.|+|||||++.++.-.... .. +. .+.++.-.. ..++.+.+... +..++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 589999999999999999998632211 11 11 233432111 12333332221 1111111
Q ss_pred CCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752 268 SRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 268 ~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 337 (401)
......+.. +. +...-.|...|..++-+|+||.--. |...-..+...+..- ..|..||++|.+...+..+
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 100012223 22 3334455666777888999999866 554444444443321 2255688888887766554
No 219
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.96 E-value=0.013 Score=49.88 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|.|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 220
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.94 E-value=0.012 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.93 E-value=0.011 Score=51.60 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 222
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.92 E-value=0.045 Score=54.10 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHH
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIK 262 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 262 (401)
.++.|..-..+ ..++|+|.+|+|||||++.+..+.... .-..++++-+++..+ ..+++.++..
T Consensus 141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 45555431112 357899999999999999988732221 224556677777653 3445554543
No 223
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.89 E-value=0.052 Score=52.19 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEE-EEEcCCCCCHHHHHHHHHHHcCCCCCCc-c-ccCcCHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHA-WVRVSLDYDFRRILDDIIKSVIPPSRVS-V-IIGEDYQLKKSI 284 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~ 284 (401)
.-.+++|+|+.|+|||||++.+.. .+.......+ ++. .+... .+.....-. + ....+.......
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHH
Confidence 346899999999999999998876 2222112233 322 11110 000000000 0 000011122446
Q ss_pred HHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752 285 LRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL 334 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 334 (401)
+...|...+-+|++|.+.+ .+.+..+.... ..|..||.|+...++.
T Consensus 202 l~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp HHHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred HHHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 6677766777999999976 65554433332 2356688888876543
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.89 E-value=0.014 Score=50.95 Aligned_cols=23 Identities=4% Similarity=-0.149 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 225
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.87 E-value=0.081 Score=57.00 Aligned_cols=124 Identities=16% Similarity=0.113 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccC---eEEEEEcCCC-------CCH-----------HHHHHHHHHHcCCCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFD---CHAWVRVSLD-------YDF-----------RRILDDIIKSVIPPS 268 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~-------~~~-----------~~~~~~i~~~l~~~~ 268 (401)
.+++|+|+.|+|||||.+.+... .+. .++ ..-.+.+.+. .++ ..-...+++.++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 47899999999999999999841 111 111 0001222221 111 223445566665521
Q ss_pred C-CccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 269 R-VSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 269 ~-~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
. ......+ .-+...-.|...|..++-+|+||.--+ |...-..+...+.. .|..||++|.+......+
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 0 0011222 222333344455556777999999766 55544555554443 366788888887766554
No 226
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.86 E-value=0.022 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.....|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35688999999999999999998863
No 227
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.83 E-value=0.024 Score=54.23 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555654445678999999999999999998865
No 228
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.82 E-value=0.013 Score=51.89 Aligned_cols=24 Identities=13% Similarity=-0.130 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999987
No 229
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.81 E-value=0.046 Score=48.03 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcc---c-ccCeEEEEEcCCCCCH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVK---F-YFDCHAWVRVSLDYDF 253 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~ 253 (401)
-.+++|+|++|+|||||++.++...... . .-...+|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4689999999999999999997522111 1 1235788876554443
No 230
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.017 Score=50.06 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.75 E-value=0.06 Score=62.04 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL 285 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l 285 (401)
.-+.+.|+|++|+|||+||.++.. .....=..++|+.....++... +..++.+...- .+.. ..++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l-~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL-LCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTC-EEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhc-eeecCChHHHHHHHH
Confidence 456889999999999999999977 3333334678888888777655 44554321111 0111 444555555
Q ss_pred HHHcC-CceEEEEEeCCC
Q 015752 286 RDYLT-NKKYFIVLDDVF 302 (401)
Q Consensus 286 ~~~L~-~kr~LlVlDdv~ 302 (401)
....+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55543 577899999984
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.74 E-value=0.016 Score=50.69 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 233
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.72 E-value=0.017 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..-.+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999876
No 234
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.71 E-value=0.019 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999976
No 235
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.69 E-value=0.019 Score=53.93 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+++|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999999876
No 236
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.69 E-value=0.02 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999873
No 237
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.062 Score=54.31 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC--eEEEEEcC--C--CCCHHHHHHH---------------HHHHcC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD--CHAWVRVS--L--DYDFRRILDD---------------IIKSVI 265 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~--~~~wv~vs--~--~~~~~~~~~~---------------i~~~l~ 265 (401)
.+++|+|+.|+|||||++.++.-.... .. +. .+.++.-. . ..++.+.+.. +++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 489999999999999999998632111 00 11 12222110 1 1123322221 111111
Q ss_pred CCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752 266 PPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 266 ~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~ 337 (401)
........... +. +...-.|.+.|..++=+|+||.--. |...-..+...+.. ...|..||++|.+...+..+
T Consensus 375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~ 452 (538)
T 3ozx_A 375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452 (538)
T ss_dssp GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 11000011222 22 2333445556667788899999766 54433334333322 12356788888887776654
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.68 E-value=0.016 Score=50.59 Aligned_cols=23 Identities=4% Similarity=0.245 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|+|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 46889999999999999999986
No 239
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.67 E-value=0.02 Score=51.51 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 240
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.66 E-value=0.021 Score=50.12 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=27.8
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+..+.+...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444432 35789999999999999999998763
No 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.65 E-value=0.016 Score=50.81 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 242
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.63 E-value=0.02 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 243
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.61 E-value=0.0085 Score=52.39 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 244
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.59 E-value=0.2 Score=50.00 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
..-.++.|.|.+|+||||||.+++.+..... =..++|++... +...+...++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence 3446888999999999999999886432221 23577777654 34555555543
No 245
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.58 E-value=0.099 Score=49.36 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL 289 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (401)
..++|+|+.|+|||||++.+..- +.. -...+.+.-....... .......-...........+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~-----------~~~~~i~~~~ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFK-----------HHKNYTQLFFGGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCS-----------SCSSEEEEECBTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccc-----------cchhEEEEEeCCChhHHHHHHHHh
Confidence 47899999999999999999872 221 2344444322111100 000000000000112334556677
Q ss_pred CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 290 TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 290 ~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
..++-+|++|..-+ .+.++.+... .. + +.-+|+||...+....+
T Consensus 238 ~~~p~ilildE~~~-~e~~~~l~~~-~~-g-~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 238 RMRPDRIILGELRS-SEAYDFYNVL-CS-G-HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TSCCSEEEECCCCS-THHHHHHHHH-HT-T-CCCEEEEEECSSHHHHH
T ss_pred hhCCCEEEEcCCCh-HHHHHHHHHH-hc-C-CCEEEEEEcccHHHHHh
Confidence 77888999999977 6666655433 22 1 22367777766554433
No 246
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.58 E-value=0.018 Score=52.22 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.56 E-value=0.083 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988875
No 248
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.55 E-value=0.15 Score=50.24 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD 250 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 250 (401)
.|-+.+ .+=..-.++.|.|.+|+||||+|.+++.+.... =..++|++...+
T Consensus 186 ~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 186 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp HHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 344444 333344688899999999999999988743222 235777765543
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.52 E-value=0.022 Score=49.95 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 250
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.51 E-value=0.018 Score=50.51 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.49 E-value=0.016 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 252
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.49 E-value=0.016 Score=51.12 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.43 E-value=0.024 Score=47.59 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-.+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 254
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.38 E-value=0.022 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|++|+|||||++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999874
No 255
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.36 E-value=0.045 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 256
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.34 E-value=0.13 Score=50.99 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCC-----CC
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPS-----RV 270 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~-----~~ 270 (401)
+.++.|..-.. -.-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+++... ..+++.++...-.... ..
T Consensus 154 rvID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 34555544222 2357899999999999999888732 123446788888888775 4566666665422210 01
Q ss_pred c----cccCc------CHHHHHHHHHHHc---CCceEEEEEeCCC
Q 015752 271 S----VIIGE------DYQLKKSILRDYL---TNKKYFIVLDDVF 302 (401)
Q Consensus 271 ~----~~~~~------~~~~l~~~l~~~L---~~kr~LlVlDdv~ 302 (401)
. ...+. -.....-.+.+++ +++.+||++||+-
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 00010 1122233444555 3689999999973
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.33 E-value=0.13 Score=50.77 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHH
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKS 263 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 263 (401)
+.++.|..-.. -.-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+++... +.++++++...
T Consensus 142 r~ID~l~pigk-GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccccc-CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 45666654211 2357899999999999999888732 123345677888888764 45666666654
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.30 E-value=0.022 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999998873
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.29 E-value=0.022 Score=50.51 Aligned_cols=116 Identities=9% Similarity=0.071 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-C----------CCHHHHHHHHHHHcC-CCCCCc-cccC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-D----------YDFRRILDDIIKSVI-PPSRVS-VIIG 275 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~----------~~~~~~~~~i~~~l~-~~~~~~-~~~~ 275 (401)
-.+++|+|+.|+|||||.+.+...... ..+...+.++-.. . +.....+..+...-. ...... ....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p-~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL-YDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT-TTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-CceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 458999999999999999999863221 0122222222110 0 111223333322100 000000 0011
Q ss_pred cCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752 276 EDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLA 335 (401)
Q Consensus 276 ~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 335 (401)
... ...+.+.+... -+++|| + + ......+...++ .+..|+++|.+.+.+.
T Consensus 95 g~~---~~~v~~~l~~G-~illLD-L-D-~~~~~~i~~~l~---~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 95 GTS---REAIEQVLATG-VDVFLD-I-D-WQGAQQIRQKMP---HARSIFILPPSKIELD 144 (219)
T ss_dssp EEE---HHHHHHHHTTT-CEEEEE-C-C-HHHHHHHHHHCT---TCEEEEEECSSHHHHH
T ss_pred CCC---HHHHHHHHhcC-CeEEEE-E-C-HHHHHHHHHHcc---CCEEEEEECCCHHHHH
Confidence 111 12344455433 567888 4 4 666677887776 3677899998865543
No 260
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.24 E-value=0.055 Score=47.08 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=46.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc-cCcCHHHHHHHHHHHc
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI-IGEDYQLKKSILRDYL 289 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~~L 289 (401)
.|+|-|.-|+||||.++.+++ ..+.....+++..-.......+.+..++..-........- +..+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999987 4444333344444333333444555555432211000000 0002233445566666
Q ss_pred CCceEEEEEeCCC
Q 015752 290 TNKKYFIVLDDVF 302 (401)
Q Consensus 290 ~~kr~LlVlDdv~ 302 (401)
.... .+|.|-..
T Consensus 80 ~~g~-~Vi~DRy~ 91 (197)
T 3hjn_A 80 SEGY-AVLLDRYT 91 (197)
T ss_dssp TTTC-EEEEESCH
T ss_pred HCCC-eEEecccc
Confidence 5443 56777653
No 261
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.23 E-value=0.033 Score=54.80 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=34.7
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG------------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|-++.++.+...+... ....+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56788888888876666321 11235588999999999999999987
No 262
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.17 E-value=0.05 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-..|+|.|++|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999873
No 263
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.16 E-value=0.025 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 264
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.15 E-value=0.092 Score=53.08 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChh
Q 015752 258 DDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPD 332 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~ 332 (401)
.++++.++..........+ .-+...-.|.+.|..++=+|+||.--+ |...-..+...+.. ...|..||++|.+..
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4566666654321112222 223333445556667778999999766 54432333222211 013667888888877
Q ss_pred HHhhc
Q 015752 333 LLASL 337 (401)
Q Consensus 333 v~~~~ 337 (401)
.+..+
T Consensus 220 ~~~~~ 224 (538)
T 1yqt_A 220 VLDYL 224 (538)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 265
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.12 E-value=0.14 Score=49.34 Aligned_cols=54 Identities=15% Similarity=0.003 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEcCCCC
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSLDY 251 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 251 (401)
-++++.|..-..+ .-++|+|.+|+|||+|+..+.+..... ..+. ++++-+++..
T Consensus 163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 4667777653222 356899999999999999888732111 1222 3456666643
No 266
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.10 E-value=0.025 Score=49.65 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 267
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.015 Score=49.48 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 268
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.08 E-value=0.028 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 269
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.08 E-value=0.025 Score=50.11 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.03 E-value=0.018 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCchHHHHHHhh-c
Q 015752 210 SVVAILDSGGFDKTAFAADTY-N 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~-~ 231 (401)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 271
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.00 E-value=0.29 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.98 E-value=0.024 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6889999999999999988763
No 273
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.98 E-value=0.078 Score=60.25 Aligned_cols=89 Identities=12% Similarity=-0.015 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~ 286 (401)
.-.++.|.|.+|+||||||.+++... ...-..++|++....++.. .+..++.+.....-... +.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 34689999999999999999987632 2223478999988877753 24555543221101112 5566666665
Q ss_pred HHc-CCceEEEEEeCCCC
Q 015752 287 DYL-TNKKYFIVLDDVFD 303 (401)
Q Consensus 287 ~~L-~~kr~LlVlDdv~~ 303 (401)
... +.+.-+||+|.+-.
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34566999999865
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.96 E-value=0.022 Score=51.64 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 275
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.95 E-value=0.033 Score=52.03 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999876
No 276
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.95 E-value=0.11 Score=59.97 Aligned_cols=103 Identities=15% Similarity=-0.010 Sum_probs=63.9
Q ss_pred cHHHHHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcc
Q 015752 194 GREELFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272 (401)
Q Consensus 194 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 272 (401)
-...|-..|. .+=..-.++.|.|++|+||||||.+++... ...-..++|++....++... +..++.+.....
T Consensus 367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~ 439 (2050)
T 3cmu_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL 439 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE
Confidence 3445555553 222344689999999999999999998733 22224688998888776542 455554322210
Q ss_pred ccCc-CHHHHHHHHHHHc-CCceEEEEEeCCCC
Q 015752 273 IIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFD 303 (401)
Q Consensus 273 ~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~ 303 (401)
-... +.+++...+.... +.+.-+||+|.+-.
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 0111 5666666666544 34567999999854
No 277
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.93 E-value=0.033 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346999999999999999998865
No 278
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.91 E-value=0.03 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 279
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.89 E-value=0.17 Score=49.82 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=32.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 260 (401)
.-.++.|.|.+|+|||||+..++.+..... -..++|++... +...+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 345889999999999999999887432211 12577776544 334444444
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.89 E-value=0.03 Score=51.79 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 281
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.83 E-value=0.03 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 282
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.83 E-value=0.23 Score=50.94 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChh
Q 015752 258 DDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPD 332 (401)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~ 332 (401)
.++++.++..........+ + -+...-.|...|..++=+|+||.--+ |...-..+...+.. ...|..||++|.+..
T Consensus 210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 4556666554221112222 2 22333345555667778999999866 54432333222221 013667899999887
Q ss_pred HHhhc
Q 015752 333 LLASL 337 (401)
Q Consensus 333 v~~~~ 337 (401)
.+..+
T Consensus 290 ~~~~~ 294 (607)
T 3bk7_A 290 VLDYL 294 (607)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76554
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.82 E-value=0.045 Score=57.85 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=56.7
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (401)
.++.|.++.+++|.+.+.-. -...+-+.++|++|.|||.||+.+++ .....| +.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc
Confidence 66778888777776655321 12234577999999999999999998 333222 2222 11
Q ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
+++....+. +...+...+...-+..+++|+||++..
T Consensus 546 ----~l~s~~vGe---------se~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 ----ELLTMWFGE---------SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ----HHHTTTCSS---------CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ----hhhccccch---------HHHHHHHHHHHHHHcCCceeechhhhH
Confidence 222222221 344444444433356789999999854
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.78 E-value=0.082 Score=48.78 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 248 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 248 (401)
-.+++|.|.+|+|||||++.++....... -..+.|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 35899999999999999999876322211 1145566543
No 285
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.76 E-value=0.33 Score=46.77 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=31.6
Q ss_pred ccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 187 DISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|....+.++.+.+.. ...... +.|.|.+|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 456666667777666643 223344 47999999999999999976
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.042 Score=48.84 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL 249 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 249 (401)
-.++.|.|.+|+|||||+.+++... ...-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3588999999999999998876522 11223577777554
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.74 E-value=0.051 Score=45.25 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.74 E-value=0.031 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 289
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.72 E-value=0.034 Score=52.68 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.72 E-value=0.04 Score=52.08 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|.|+|+.|+|||||+..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 291
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.71 E-value=0.036 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999887
No 292
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.70 E-value=0.043 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567889999999999999999975
No 293
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.70 E-value=0.022 Score=52.86 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 294
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.69 E-value=0.049 Score=46.13 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....-|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999864
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.66 E-value=0.034 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999873
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.64 E-value=0.066 Score=54.94 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=36.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 77899988888887777653 3788999999999999999987
No 297
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.58 E-value=0.036 Score=50.55 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.+...|..++=+|+||.--. |+..-..+...+.. ...|..||++|.+.+.+...
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 219 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 219 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 34444556677999999866 54443444333322 11266788889987766543
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.50 E-value=0.039 Score=49.62 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752 284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 336 (401)
.+...|..++-+++||.--. |+..-..+...+..- ..|..||++|.+.+.+..
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~ 204 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK 204 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 44455566778999999866 554444444333221 136668888888755443
No 299
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.46 E-value=0.059 Score=51.90 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++-+.-+-....+++|+|++|+|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444433333456899999999999999999986
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.46 E-value=0.04 Score=51.82 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 301
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.45 E-value=0.04 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 302
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.40 E-value=0.041 Score=50.03 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999864
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.38 E-value=0.045 Score=48.85 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999876
No 304
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.37 E-value=0.042 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.36 E-value=0.051 Score=47.62 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+..+..++.. -+....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 5556665543 22234688999999999999988887
No 306
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.35 E-value=0.045 Score=49.28 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.34 E-value=0.048 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 357999999999999999998865
No 308
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.33 E-value=0.043 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.30 E-value=0.05 Score=44.57 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999764
No 310
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.29 E-value=0.64 Score=41.10 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=53.3
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc-cCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN-NHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVS 271 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 271 (401)
..++++..+..+ ..+.|.|..|+||||+...+.-+ ........ ..+.+..........+...+...++......
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 345566666543 47889999999999866554322 11111222 2333333322223344445544443321110
Q ss_pred ---------------cccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752 272 ---------------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD 303 (401)
Q Consensus 272 ---------------~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~ 303 (401)
.++-- +...+...+...+.+- -+||+|.++.
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 00111 5566666666644443 4789999965
No 311
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.28 E-value=0.041 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 312
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.21 E-value=0.054 Score=53.18 Aligned_cols=102 Identities=12% Similarity=0.213 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC----eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD----CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~ 271 (401)
+.++.|..=..+. -++|.|..|+|||+|+..+.+.... +-+ .++++-+++... +.+++.++...=.......
T Consensus 140 raID~l~pigrGQ-r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv 216 (465)
T 3vr4_D 140 SAIDHLNTLVRGQ-KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM 216 (465)
T ss_dssp HHHHTTSCCBTTC-BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred eEEecccccccCC-EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence 3455554322222 3578899999999999999884333 222 567777777654 4455555544210000000
Q ss_pred --cccCc-CH-----HHHHHHHHHHc---CCceEEEEEeCC
Q 015752 272 --VIIGE-DY-----QLKKSILRDYL---TNKKYFIVLDDV 301 (401)
Q Consensus 272 --~~~~~-~~-----~~l~~~l~~~L---~~kr~LlVlDdv 301 (401)
...+. .. ....-.+.+++ +|+.+||++||+
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 00111 11 11222344554 379999999997
No 313
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.20 E-value=0.12 Score=45.54 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-..|.|.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999999987
No 314
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.20 E-value=0.048 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-.+|+|.|+.|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999887
No 315
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.19 E-value=0.16 Score=54.64 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 290 TNKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
..++-||+||..-. |+.+-.. +...+.. ..|+.+|++|.+.+++..+
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 46788999999966 4432222 2233321 2478999999998876544
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.17 E-value=0.047 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 317
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.15 E-value=0.052 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999999976
No 318
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.09 E-value=0.16 Score=51.80 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+...+.+..+.. .+++.|.|.+|.||||++..+..
T Consensus 192 ~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 192 EEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp HHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHH
Confidence 344455555543 35788999999999999988876
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.09 E-value=0.092 Score=47.92 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-+..||....+....+.++|++|.|||.+|..+++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 445666654323345788999999999999999987
No 320
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.08 E-value=0.055 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999988865
No 321
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.05 E-value=0.054 Score=49.40 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR 286 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (401)
.-.+++|+|+.|+|||||.+.+.. .+...+...+++. ..-.+-.... ..++.+ .....+...+...+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q--------~~~gl~~~~l~~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQ--------REVGEDTKSFADALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEE--------EEBTTTBSCHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeH--------HHhCCCHHHHHHHHH
Confidence 346899999999999999998876 2222223333332 1100000000 000000 000000112244555
Q ss_pred HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752 287 DYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL 334 (401)
Q Consensus 287 ~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 334 (401)
..|..++=+|++|..-+ .+....+.... ..|.-|++||.+.++.
T Consensus 93 ~aL~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 55555677888899875 55544433332 2366788888876543
No 322
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.03 E-value=0.062 Score=45.46 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.02 E-value=0.081 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 324
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.01 E-value=0.085 Score=52.44 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-- 271 (401)
+.++.|..-..+ .-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++... +.++...+...=.......
T Consensus 164 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIGRG-QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEETT-CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccccC-CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 455656542112 34678999999999996 4666632 245 357777887654 4455555554211100000
Q ss_pred cccCc-CHH-----HHHHHHHHHc--CCceEEEEEeCCC
Q 015752 272 VIIGE-DYQ-----LKKSILRDYL--TNKKYFIVLDDVF 302 (401)
Q Consensus 272 ~~~~~-~~~-----~l~~~l~~~L--~~kr~LlVlDdv~ 302 (401)
...++ ... ...-.+.+++ +|+.+||++||+-
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 00111 111 1122333444 5899999999973
No 325
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.00 E-value=0.058 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988876
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.99 E-value=0.049 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 327
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.96 E-value=0.058 Score=48.22 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999987
No 328
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.95 E-value=0.052 Score=50.04 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4889999999999999999965
No 329
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.93 E-value=0.083 Score=50.67 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=31.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|....+.++...+..-......+.|.|.+|.||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 3567777666666655532111223356899999999999999876
No 330
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.93 E-value=0.053 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998764
No 331
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.89 E-value=0.066 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 332
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.88 E-value=0.098 Score=49.52 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+++-+.-.-....+++|+|++|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433334567999999999999999999864
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.88 E-value=0.052 Score=44.73 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 334
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.87 E-value=0.054 Score=49.62 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCccc--------ccCeEEEEEcCCCCCHHHHHHH---------------HHHHcCC
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKF--------YFDCHAWVRVSLDYDFRRILDD---------------IIKSVIP 266 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~vs~~~~~~~~~~~---------------i~~~l~~ 266 (401)
.++.|+|.+|+|||||+..+........ .-..+++++..... ..+... +++.+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l~l 108 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGLLI 108 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCceEE
Confidence 5899999999999999998875221110 01245677665543 222111 1222221
Q ss_pred CCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC----Cc---hhHHHHHhhCCCC--CCCcEEEEecCChhHH
Q 015752 267 PSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD----DS---EIWIDVEELLPDD--ENGSRVFITVTDPDLL 334 (401)
Q Consensus 267 ~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~----~~---~~~~~l~~~l~~~--~~gs~iivTTR~~~v~ 334 (401)
.......... +..+ ...+...+.+ .-+||||.+-. |. .....+...|..- ..|+.||++|......
T Consensus 109 ~~~~~~~~~~ls~g~-~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 109 QPLIGSLPNIMAPEW-FDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp CCCTTSCCCTTSHHH-HHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred eecCCCCcccCCHHH-HHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 1110001222 3333 3445555544 56899999743 22 1123333333221 2367788888765543
No 335
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.86 E-value=0.084 Score=52.37 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-- 271 (401)
+.++.|..-..+ .-++|.|.+|+|||+|| ..+.+.. +-+ .++++-+++... +.++..++...-.......
T Consensus 151 raID~l~PigrG-QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGRG-QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBTT-CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccccC-CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 455555542222 34678999999999995 4666632 234 357777887654 4455556554221111000
Q ss_pred cccCc-CHHH-----HHHHHHHHc--CCceEEEEEeCC
Q 015752 272 VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDV 301 (401)
Q Consensus 272 ~~~~~-~~~~-----l~~~l~~~L--~~kr~LlVlDdv 301 (401)
...++ .... ..-.+.+++ +|+.+||++||+
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 01111 1111 112333444 589999999997
No 336
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.83 E-value=0.055 Score=50.53 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999998864
No 337
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.82 E-value=0.046 Score=49.64 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+...|+|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998877
No 338
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.79 E-value=0.07 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.76 E-value=0.1 Score=49.46 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.+-+.....+..+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443333334678999999999999999998864
No 340
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.74 E-value=0.065 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47888999999999999988876
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.73 E-value=0.066 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999876
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.72 E-value=0.061 Score=50.47 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999985
No 343
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.71 E-value=0.1 Score=51.91 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=48.0
Q ss_pred EEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCC--------CCCCccccCc---
Q 015752 211 VVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIP--------PSRVSVIIGE--- 276 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~~--- 276 (401)
-++|.|.+|+|||+|| ..+.+.. . -+ .++++-+++... +.++..++...-.. ..++.....-
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4678999999999995 5777632 2 34 457777887654 33444444331100 0000000000
Q ss_pred -CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 277 -DYQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 277 -~~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
..-.+++.++. +|+.+||++||+-
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 12233344444 5899999999973
No 344
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.70 E-value=0.057 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 467999999999999999875
No 345
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.68 E-value=0.32 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998865
No 346
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.67 E-value=0.21 Score=49.51 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-- 271 (401)
+.++.|..-..+ .-++|.|..|+|||+|+ ..+.+. .+-+ .++++-+++... +.++..++...=.......
T Consensus 151 kaID~l~PigrG-QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPIGRG-QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCCBTT-CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccccccccC-CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 455656542222 34678899999999996 566662 2233 467888888764 4455565544311110000
Q ss_pred cccCc-C---------HHHHHHHHHHHcCCceEEEEEeCCC
Q 015752 272 VIIGE-D---------YQLKKSILRDYLTNKKYFIVLDDVF 302 (401)
Q Consensus 272 ~~~~~-~---------~~~l~~~l~~~L~~kr~LlVlDdv~ 302 (401)
...++ . .-.+++.++. +|+.+||++||+.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 00111 1 1123333333 6899999999983
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.63 E-value=0.063 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999764
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.61 E-value=0.1 Score=52.17 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
....+|+|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998874
No 349
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.56 E-value=0.06 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 350
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.56 E-value=0.32 Score=52.46 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
-.|...|-.++-+||||.--+ |......+...+..- +..||++|.+.+.....
T Consensus 910 VaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l 964 (986)
T 2iw3_A 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNL 964 (986)
T ss_dssp HHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTT
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh
Confidence 345555677888999999755 555555665555433 33688888887766544
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.064 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 352
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.54 E-value=0.061 Score=49.30 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 353
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.50 E-value=0.071 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999988876
No 354
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.48 E-value=0.066 Score=45.00 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 355
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.46 E-value=0.074 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.43 E-value=0.076 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.|.|++|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999976
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.42 E-value=0.065 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 358
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.38 E-value=0.071 Score=43.94 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 359
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.38 E-value=0.09 Score=55.39 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCceEEEEEeCC---CC--CchhH-HHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752 290 TNKKYFIVLDDV---FD--DSEIW-IDVEELLPDDENGSRVFITVTDPDLLAS 336 (401)
Q Consensus 290 ~~kr~LlVlDdv---~~--~~~~~-~~l~~~l~~~~~gs~iivTTR~~~v~~~ 336 (401)
..++-|++||.. -+ |.... ..+...+.. .|+.+|++|.+.+....
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTAL 703 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHh
Confidence 678899999998 33 22211 123333333 47889999999887653
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.37 E-value=0.066 Score=43.90 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 361
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.35 E-value=0.071 Score=43.99 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 362
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.079 Score=45.05 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999864
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.33 E-value=0.11 Score=46.28 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=18.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-..|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.26 E-value=0.093 Score=43.34 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 365
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.25 E-value=0.15 Score=46.42 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
++...+.........|+++|.+|+|||||...+...
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444444567889999999999999999864
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.23 E-value=0.074 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556889999999999999988764
No 367
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.23 E-value=0.066 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999976
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.21 E-value=0.07 Score=45.15 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 369
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.16 E-value=0.2 Score=53.81 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752 290 TNKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~ 337 (401)
..++-||+||..-. |+.+-.. +...+.. ..|+.||++|.+.+++...
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~~g~tvl~vTH~~el~~l~ 802 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTLFVTHYPPVCELE 802 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGGHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-hcCCeEEEEeCcHHHHHHH
Confidence 56788999999876 4432222 2233321 2478999999998776543
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.15 E-value=0.22 Score=56.74 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc-cCcCHHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI-IGEDYQLKKSILRD 287 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~ 287 (401)
-++|-|.|+.|+||||||.++.. .....=..++|+.....++..- +..++.+...--- -++..++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 46899999999999999999986 4555556789999988887653 6777765443200 11144555555555
Q ss_pred HcC-CceEEEEEeCCCC
Q 015752 288 YLT-NKKYFIVLDDVFD 303 (401)
Q Consensus 288 ~L~-~kr~LlVlDdv~~ 303 (401)
.++ +..-+||+|-|-.
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 554 5677999999844
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.13 E-value=0.074 Score=43.69 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHhhcc
Q 015752 212 VAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~~ 232 (401)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999998753
No 372
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.13 E-value=0.086 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 373
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.12 E-value=0.057 Score=50.47 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999865
No 374
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.10 E-value=0.11 Score=48.28 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.2
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhh
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY 230 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 230 (401)
.++++.+.+.. .+++|+|+.|+|||||.+.+.
T Consensus 155 gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 36677776642 478999999999999999997
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.08 E-value=0.08 Score=43.66 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.05 E-value=0.075 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999887654
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.04 E-value=0.089 Score=45.80 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....|.|+|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999864
No 378
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.04 E-value=0.36 Score=50.08 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHcCCc--eEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752 284 ILRDYLTNK--KYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL 337 (401)
Q Consensus 284 ~l~~~L~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~ 337 (401)
.|.+.|..+ .-+|+||.--. |+..-..+...+.. ...|..||++|.+.+++..+
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~ 270 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA 270 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHC
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhC
Confidence 333444344 34999999866 55444444433321 12366799999998876543
No 379
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.03 E-value=0.086 Score=53.06 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 380
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.03 E-value=0.14 Score=46.30 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.++.+.+.........|+|+|.+|+|||||...+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444445444445567889999999999999999864
No 381
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.02 E-value=0.093 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999764
No 382
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.01 E-value=0.096 Score=44.01 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 383
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.00 E-value=0.078 Score=44.78 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.99 E-value=0.084 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 385
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.99 E-value=0.064 Score=46.39 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-..|+|+|.+|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988763
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.99 E-value=0.078 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998754
No 387
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.98 E-value=0.23 Score=49.85 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH-HHHHH
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR-RILDD 259 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~ 259 (401)
+.++.|..-. +-.-++|.|..|+|||+|+..+.+.. +-+.++++-+++..+.. +++.+
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566665421 12457899999999999999987632 23578888888877643 44444
No 388
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.97 E-value=0.08 Score=43.61 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998753
No 389
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.96 E-value=0.17 Score=44.49 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
..|.|.|..|+||||+++.+.+.... ..+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873221 23333344333333334555666665
No 390
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.94 E-value=0.079 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-|+|+|.+|+|||||.+.+.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999977764
No 391
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.94 E-value=0.075 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345788999999999999999853
No 392
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.94 E-value=0.084 Score=52.85 Aligned_cols=43 Identities=5% Similarity=-0.106 Sum_probs=29.0
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.|.+..+.+.+..-...++..+|.+.|++|+||||+|+.+..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 3344444444443321223457899999999999999999987
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.92 E-value=0.099 Score=43.84 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998854
No 394
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.92 E-value=0.16 Score=45.44 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII 261 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 261 (401)
...|.|.|+.|+||||+++.+..... ...+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 36899999999999999999987322 23455344443332222334444444
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.91 E-value=0.099 Score=44.00 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999764
No 396
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.90 E-value=0.097 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.90 E-value=0.085 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999888764
No 398
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.90 E-value=0.11 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 399
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.86 E-value=0.091 Score=44.46 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+.+|+|..|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 400
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.85 E-value=0.089 Score=43.49 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999754
No 401
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.83 E-value=0.15 Score=45.28 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-----cccCc-CHHHHHHH
Q 015752 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-----VIIGE-DYQLKKSI 284 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~-~~~~l~~~ 284 (401)
.|.+.|.||+||||+|..+..... ...++ +..+.+...-+... ..++..+....... ..... +....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 477889999999999988876321 22333 33444443323221 11222222210000 00111 22222
Q ss_pred HHHHcCCceEEEEEeCCCC-------CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752 285 LRDYLTNKKYFIVLDDVFD-------DSEIWIDVEELLPDDENGSRVFITVTDP 331 (401)
Q Consensus 285 l~~~L~~kr~LlVlDdv~~-------~~~~~~~l~~~l~~~~~gs~iivTTR~~ 331 (401)
+. .+.=++|+|++-+ ....|..+...++. |..++.|+.-+
T Consensus 81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 22 2456999998754 13467777765543 55788888755
No 402
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.80 E-value=0.072 Score=45.89 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
+++.+.-... ..-|+|+|.+|+|||||...+.++
T Consensus 15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 4444532222 345789999999999999998763
No 403
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.79 E-value=0.085 Score=43.92 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhccc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
..-|+|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999997643
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.77 E-value=0.12 Score=43.02 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457889999999999999998764
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.76 E-value=0.09 Score=44.25 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 406
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.73 E-value=0.6 Score=41.50 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=54.1
Q ss_pred EEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC---C--------CCCccccCc-CHH
Q 015752 212 VAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP---P--------SRVSVIIGE-DYQ 279 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~~~~~~~-~~~ 279 (401)
+.|+|+.|.|||.+|..+.... . ..++++. .. ..+..++.+.+.. . ......+-- +.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6788999999999998877632 1 2234433 11 1233333333221 1 000001111 334
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 015752 280 LKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV 328 (401)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT 328 (401)
.+..... .+.++--+||+|.+.. ....+..+...++. ..++++|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~---~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSIA---PFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCCC---SEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhccC---CEEEEEec
Confidence 4444333 3344556999999987 44567777776652 34555553
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.73 E-value=0.085 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998863
No 408
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.70 E-value=0.11 Score=43.14 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998754
No 409
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.68 E-value=0.13 Score=51.19 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCc----ccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCC
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHV----KFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSR 269 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~ 269 (401)
+.++.|..=..+ .-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+++... +.++.+.+...=.....
T Consensus 151 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccccC-CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 456666542222 34678999999999995 466662211 12234 477788888764 44555555542111100
Q ss_pred Cc--cccCc-CHHH-----HHHHHHHHc--CCceEEEEEeCCC
Q 015752 270 VS--VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDVF 302 (401)
Q Consensus 270 ~~--~~~~~-~~~~-----l~~~l~~~L--~~kr~LlVlDdv~ 302 (401)
.. ...++ .... ..-.+.+++ +|+.+||++||+-
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00 00111 1111 112333444 5899999999973
No 410
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.67 E-value=0.076 Score=46.48 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 411
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.65 E-value=0.092 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999998876
No 412
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.65 E-value=0.96 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..|+|+|..|+|||||++.+..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4789999999999999999965
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.64 E-value=0.096 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
--|+|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 414
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.61 E-value=0.09 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 415
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.61 E-value=0.096 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346789999999999999999764
No 416
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.55 E-value=0.18 Score=44.81 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcccCccc--ccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF--YFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
....|.|.|..|+||||+++.+.+ .... .++......-.......+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE--YLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 457899999999999999999987 3332 3444331222222223445555555
No 417
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.55 E-value=0.12 Score=43.81 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhccc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
...-|+|+|.+|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998643
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.54 E-value=0.09 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..++|.|++|+||||+|+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.54 E-value=0.069 Score=44.70 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 420
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.53 E-value=0.097 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998874
No 421
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.52 E-value=0.14 Score=44.79 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
+.|+|-|.-|+||||+++.+.+ .....++.+. ..-.........++.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v~~-~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDVIM-TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCEEE-eeCCCCChHHHHHHHHHh
Confidence 4688999999999999999987 3444444332 222222233444555543
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.49 E-value=0.094 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.48 E-value=0.1 Score=43.69 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999998764
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.45 E-value=0.1 Score=43.63 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 425
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.45 E-value=0.1 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 426
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.41 E-value=0.097 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998875
No 427
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.40 E-value=0.12 Score=50.71 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc--------cccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCC
Q 015752 198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK--------FYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPP 267 (401)
Q Consensus 198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~ 267 (401)
.++.|..=..+ .-++|.|.+|+|||+|+..+.+..... ++=+ .++++-+++... +.++..++...=...
T Consensus 137 aID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccC-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 44545432222 235688999999999999998754331 1112 566777777654 445555544320000
Q ss_pred CCCc--cccCc-CHH-----HHHHHHHHHc---CCceEEEEEeCC
Q 015752 268 SRVS--VIIGE-DYQ-----LKKSILRDYL---TNKKYFIVLDDV 301 (401)
Q Consensus 268 ~~~~--~~~~~-~~~-----~l~~~l~~~L---~~kr~LlVlDdv 301 (401)
.... ...+. ... ...-.+.+++ +|+.+||++||+
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0000 00111 111 1222344554 379999999997
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.39 E-value=0.11 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhccc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998654
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.34 E-value=0.1 Score=44.65 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..-|+|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34577999999999999997766
No 430
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.34 E-value=0.11 Score=44.68 Aligned_cols=22 Identities=14% Similarity=-0.102 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999866654
No 431
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.31 E-value=0.13 Score=44.14 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456889999999999999998764
No 432
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.30 E-value=0.15 Score=47.34 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.2
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.++++.+++.. .+++|+|++|+|||||.+.+..
T Consensus 159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence 46677777643 4789999999999999999986
No 433
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.28 E-value=0.1 Score=43.55 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 434
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.1 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 435
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.11 Score=44.34 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999764
No 436
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.23 E-value=0.14 Score=45.00 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.22 E-value=0.13 Score=44.63 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhccc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
...|+|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999997643
No 438
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.21 E-value=0.086 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.033 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...-|+|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345678999999999999999875
No 439
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.20 E-value=0.11 Score=44.57 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 440
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.19 E-value=0.19 Score=49.60 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+.|.|.+|.|||+++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 888999999999999988876
No 441
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.18 E-value=0.14 Score=43.58 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhccc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
....-|+|+|.+|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998643
No 442
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.24 Score=41.82 Aligned_cols=25 Identities=20% Similarity=0.020 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999853
No 443
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.16 E-value=0.12 Score=51.35 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|.++|++|+||||+++.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346888999999999999999986
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.16 E-value=0.11 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.14 E-value=0.11 Score=44.24 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 446
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.12 E-value=0.14 Score=43.46 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999764
No 447
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.11 E-value=0.067 Score=54.79 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-+.++|++|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 477999999999999999987
No 448
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.10 E-value=0.087 Score=51.95 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc--cCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY--FDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-- 271 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-- 271 (401)
+.++.|..=..+ .-++|.|.+|+|||+|+..++++....+. =+.++++-+++... +.+++.++...-.......
T Consensus 141 r~ID~l~pigrG-Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 141 STIDGTNTLVRG-QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp HHHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred EeeeeeeccccC-CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 345555432212 23567899999999999999875443221 13566777777654 4556666654311110000
Q ss_pred cccCc-C-----HHHHHHHHHHHc---CCceEEEEEeCC
Q 015752 272 VIIGE-D-----YQLKKSILRDYL---TNKKYFIVLDDV 301 (401)
Q Consensus 272 ~~~~~-~-----~~~l~~~l~~~L---~~kr~LlVlDdv 301 (401)
...+. . .....-.+.+++ +|+.+||++||+
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 00011 1 111222333444 479999999996
No 449
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456789999999999999999864
No 450
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.08 E-value=0.16 Score=44.35 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988765
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.05 E-value=0.12 Score=43.85 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.11 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
--|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45789999999999999998764
No 453
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.04 E-value=0.11 Score=45.12 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999764
No 454
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.01 E-value=0.12 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446779999999999999998764
No 455
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.11 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.95 E-value=0.11 Score=44.34 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999999753
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.90 E-value=0.12 Score=44.10 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhccc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998653
No 458
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.11 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356789999999999999998763
No 459
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.87 E-value=0.1 Score=48.61 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 015752 211 VVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999775
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 461
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.84 E-value=0.13 Score=47.70 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999764
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.83 E-value=0.13 Score=43.66 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.13 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 464
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.81 E-value=0.2 Score=43.09 Aligned_cols=39 Identities=21% Similarity=0.103 Sum_probs=25.5
Q ss_pred eEEEEE-cCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752 210 SVVAIL-DSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD 250 (401)
Q Consensus 210 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 250 (401)
++|+|+ +-||+||||+|..+.. .....-..+.-+.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCC
Confidence 578887 6699999999988876 22222224555555433
No 465
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.79 E-value=0.12 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999764
No 466
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.79 E-value=0.11 Score=46.03 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI 260 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 260 (401)
-.++.|.|.+|+|||++|.+++.+. ....-..+++++... +...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 3588899999999999998876421 122233566666544 344444443
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.78 E-value=0.12 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 468
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.77 E-value=0.13 Score=44.12 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 469
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.74 E-value=0.13 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999999874
No 470
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.71 E-value=0.12 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhccc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNNN 233 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~~ 233 (401)
..-|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998654
No 471
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.68 E-value=0.19 Score=44.62 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q 015752 212 VAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 212 i~I~G~gGiGKTtLa~~v~~ 231 (401)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999998876
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.67 E-value=0.13 Score=44.23 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 473
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.65 E-value=0.13 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999764
No 474
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.59 E-value=0.2 Score=45.88 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999864
No 475
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.56 E-value=0.25 Score=48.22 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.-.+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999998865
No 476
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.55 E-value=0.16 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 477
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.52 E-value=0.13 Score=45.24 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 015752 211 VVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 211 vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3668899999999999988754
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.49 E-value=0.17 Score=43.60 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 479
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.48 E-value=0.26 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
...+++.+.|.||+||||+|..+..
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 4568899999999999999987764
No 480
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.47 E-value=0.11 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.45 E-value=0.12 Score=43.43 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999764
No 482
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.42 E-value=0.24 Score=41.77 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999653
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.39 E-value=0.19 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.--|+|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999888754
No 484
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.38 E-value=0.14 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q 015752 210 SVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999875
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.37 E-value=0.17 Score=44.91 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567889999999999999999864
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.34 E-value=0.16 Score=51.62 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
+...+|.|.|++|+||||+|+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.30 E-value=0.11 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.27 E-value=0.077 Score=56.40 Aligned_cols=46 Identities=26% Similarity=0.203 Sum_probs=36.1
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752 186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
.+++|.+..++.|.+.+.-. -.....+.++|++|+|||+||+.+++
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 77889888888888776421 11234578999999999999999997
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.26 E-value=0.15 Score=44.10 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998754
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.24 E-value=1 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
-..++|+|+.|+|||||++.+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 35899999999999999999975
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.24 E-value=0.15 Score=43.91 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHhhcc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
...-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3456889999999999999998764
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.21 E-value=0.14 Score=44.20 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999998764
No 493
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.20 E-value=0.14 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 494
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.18 E-value=0.31 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCchHHHHHHhhc
Q 015752 208 GLSVVAILDSGGFDKTAFAADTYN 231 (401)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLa~~v~~ 231 (401)
..+++.+.|-||+||||+|..++.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 457888899999999999988764
No 495
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.17 E-value=0.17 Score=47.22 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752 207 SGLSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45678999999999999999998764
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.17 E-value=0.15 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.-|+|+|.+|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 497
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.16 E-value=0.34 Score=48.81 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC
Q 015752 197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY 251 (401)
Q Consensus 197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 251 (401)
+.++.|..-. +-.-++|.|..|+|||+|+..+.+.. +-+.++++-+++..
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 4566665422 22467899999999999999998732 23567888888764
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.14 E-value=0.096 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=10.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcc
Q 015752 209 LSVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 209 ~~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
..-|+|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 499
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.00 E-value=0.26 Score=50.86 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=30.8
Q ss_pred EEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752 211 VVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262 (401)
Q Consensus 211 vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 262 (401)
+..|+||||.|||+ ++..+++ .++. ...+.++...+..+..++..+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 67799999999996 5555544 2222 23566776666566666666543
No 500
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.99 E-value=0.15 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcc
Q 015752 210 SVVAILDSGGFDKTAFAADTYNN 232 (401)
Q Consensus 210 ~vi~I~G~gGiGKTtLa~~v~~~ 232 (401)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999999874
Done!