Query 015754
Match_columns 401
No_of_seqs 211 out of 1385
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 6E-122 1E-126 879.4 27.4 385 1-400 1-385 (443)
2 PLN00221 tubulin alpha chain; 100.0 3E-100 6E-105 780.4 28.0 391 1-399 1-391 (450)
3 PTZ00335 tubulin alpha chain; 100.0 4.7E-99 1E-103 770.8 28.6 391 1-399 1-391 (448)
4 cd02188 gamma_tubulin Gamma-tu 100.0 6.3E-97 1E-101 751.8 26.1 383 2-400 1-388 (431)
5 PTZ00010 tubulin beta chain; P 100.0 1.3E-96 3E-101 753.3 27.1 382 1-400 1-382 (445)
6 PLN00222 tubulin gamma chain; 100.0 3.4E-96 7E-101 750.2 26.7 384 1-400 2-394 (454)
7 cd02186 alpha_tubulin The tubu 100.0 7.6E-96 2E-100 746.1 27.5 390 2-399 1-390 (434)
8 PTZ00387 epsilon tubulin; Prov 100.0 6.1E-95 1.3E-99 741.6 27.5 371 1-399 1-406 (465)
9 PLN00220 tubulin beta chain; P 100.0 1.3E-94 2.7E-99 740.1 27.6 381 1-399 1-381 (447)
10 cd02187 beta_tubulin The tubul 100.0 3E-94 6.5E-99 733.1 27.5 380 2-399 1-380 (425)
11 KOG1374 Gamma tubulin [Cytoske 100.0 1E-92 2.3E-97 679.0 22.8 380 1-390 2-389 (448)
12 cd02189 delta_tubulin The tubu 100.0 6.7E-86 1.5E-90 675.1 28.0 370 4-399 2-403 (446)
13 cd02190 epsilon_tubulin The tu 100.0 6.6E-86 1.4E-90 662.4 24.1 336 2-400 1-336 (379)
14 KOG1376 Alpha tubulin [Cytoske 100.0 9.4E-86 2E-90 629.3 14.4 370 1-401 1-370 (407)
15 cd06059 Tubulin The tubulin su 100.0 1.5E-77 3.2E-82 604.5 25.9 338 3-399 1-339 (382)
16 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2.8E-69 6E-74 534.5 23.2 315 3-361 1-315 (328)
17 KOG1375 Beta tubulin [Cytoskel 100.0 6.9E-58 1.5E-62 439.6 10.6 300 45-400 7-306 (369)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 3E-53 6.5E-58 396.4 10.9 216 3-226 1-216 (216)
19 cd06060 misato Human Misato sh 100.0 1.7E-42 3.8E-47 355.4 22.1 305 2-322 1-346 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 6.5E-39 1.4E-43 294.5 10.2 185 51-246 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.8E-33 4E-38 279.8 15.9 289 1-338 1-315 (349)
22 KOG2530 Members of tubulin/Fts 100.0 7.3E-33 1.6E-37 271.9 11.9 237 1-257 1-324 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 4.9E-28 1.1E-32 236.6 19.0 270 4-338 3-274 (303)
24 PF03953 Tubulin_C: Tubulin C- 99.9 2.6E-27 5.5E-32 203.3 8.2 125 263-400 1-125 (126)
25 TIGR00065 ftsZ cell division p 99.9 3.7E-26 7.9E-31 227.0 13.8 274 4-338 20-294 (349)
26 cd02201 FtsZ_type1 FtsZ is a G 99.9 3E-26 6.4E-31 224.7 12.7 272 4-338 3-275 (304)
27 PRK13018 cell division protein 99.9 3.1E-24 6.7E-29 214.2 18.6 269 4-338 31-301 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 3E-22 6.6E-27 181.5 12.2 149 84-244 17-180 (180)
29 PRK09330 cell division protein 99.9 4.1E-22 8.9E-27 199.2 12.8 273 3-338 15-288 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 5.7E-14 1.2E-18 118.5 5.0 67 2-76 1-71 (115)
31 COG0206 FtsZ Cell division GTP 99.4 2.6E-12 5.6E-17 126.5 13.3 148 105-261 72-219 (338)
32 smart00865 Tubulin_C Tubulin/F 98.7 1E-08 2.2E-13 86.0 2.6 92 248-352 1-96 (120)
33 PF13809 Tubulin_2: Tubulin li 97.4 0.0033 7.2E-08 63.0 14.7 63 135-197 150-220 (345)
34 PLN02847 triacylglycerol lipas 78.6 6.3 0.00014 42.3 7.2 117 50-170 154-287 (633)
35 PRK14484 phosphotransferase ma 67.2 5.6 0.00012 34.0 3.0 42 115-160 41-83 (124)
36 cd00741 Lipase Lipase. Lipase 64.2 12 0.00026 32.3 4.6 63 105-171 1-63 (153)
37 PF03610 EIIA-man: PTS system 62.8 10 0.00022 31.5 3.8 32 114-145 39-70 (116)
38 PF12953 DUF3842: Domain of un 62.3 7.6 0.00016 33.3 2.9 51 143-207 6-57 (131)
39 cd00006 PTS_IIA_man PTS_IIA, P 62.1 24 0.00051 29.6 5.9 31 115-145 40-70 (122)
40 TIGR00824 EIIA-man PTS system, 58.1 33 0.00072 28.6 6.1 32 115-146 41-72 (116)
41 cd00519 Lipase_3 Lipase (class 56.6 11 0.00025 34.8 3.4 73 101-178 97-169 (229)
42 PF01764 Lipase_3: Lipase (cla 52.5 13 0.00028 31.2 2.8 56 104-163 35-91 (140)
43 PRK09461 ansA cytoplasmic aspa 49.0 34 0.00074 34.2 5.6 95 109-211 62-157 (335)
44 PF06908 DUF1273: Protein of u 46.6 62 0.0013 29.3 6.3 85 114-207 27-111 (177)
45 PF00710 Asparaginase: Asparag 46.2 48 0.001 32.7 6.1 91 110-207 54-145 (313)
46 cd00411 Asparaginase Asparagin 41.0 54 0.0012 32.5 5.5 90 110-207 60-152 (323)
47 PF01713 Smr: Smr domain; Int 38.8 1.4E+02 0.0031 22.8 6.6 53 116-171 9-67 (83)
48 PF03283 PAE: Pectinacetyleste 38.0 94 0.002 31.4 6.8 82 107-195 132-222 (361)
49 TIGR02364 dha_pts dihydroxyace 37.2 33 0.00071 29.2 2.9 42 115-159 41-84 (125)
50 smart00870 Asparaginase Aspara 33.4 88 0.0019 31.0 5.7 96 110-211 57-155 (323)
51 TIGR02153 gatD_arch glutamyl-t 32.7 98 0.0021 31.9 6.0 91 110-207 120-211 (404)
52 TIGR00519 asnASE_I L-asparagin 31.2 88 0.0019 31.3 5.3 73 110-189 59-132 (336)
53 COG0572 Udk Uridine kinase [Nu 31.1 59 0.0013 30.6 3.7 27 137-164 9-35 (218)
54 PRK13660 hypothetical protein; 29.7 1.9E+02 0.0042 26.3 6.7 103 115-240 28-135 (182)
55 COG1929 Glycerate kinase [Carb 29.4 75 0.0016 32.1 4.3 83 112-211 216-302 (378)
56 PF02353 CMAS: Mycolic acid cy 28.5 79 0.0017 30.6 4.3 64 101-171 29-93 (273)
57 PRK15088 PTS system mannose-sp 28.0 1.4E+02 0.0031 29.7 6.1 32 115-146 42-73 (322)
58 KOG3178 Hydroxyindole-O-methyl 27.2 65 0.0014 32.4 3.4 41 124-169 167-207 (342)
59 PLN02408 phospholipase A1 24.7 1.5E+02 0.0033 30.1 5.6 63 113-179 179-243 (365)
60 PRK04183 glutamyl-tRNA(Gln) am 24.1 1.6E+02 0.0035 30.5 5.8 90 110-207 133-223 (419)
61 PF08259 Periviscerokin: Periv 24.0 37 0.00079 16.5 0.5 9 257-265 3-11 (11)
62 PF13508 Acetyltransf_7: Acety 23.6 99 0.0021 23.0 3.3 23 146-168 40-62 (79)
63 COG4427 Uncharacterized protei 22.9 88 0.0019 30.4 3.3 88 116-216 5-100 (350)
64 PTZ00489 glutamate 5-kinase; P 22.6 2.8E+02 0.0061 26.7 6.9 48 157-206 87-134 (264)
65 COG2893 ManX Phosphotransferas 22.1 2.9E+02 0.0063 24.1 6.2 48 113-164 40-87 (143)
66 PF06858 NOG1: Nucleolar GTP-b 21.5 2.3E+02 0.0051 20.8 4.6 36 134-169 16-53 (58)
67 cd00598 GH18_chitinase-like Th 21.5 3.4E+02 0.0074 24.1 7.0 89 111-207 85-177 (210)
68 COG3969 Predicted phosphoadeno 20.9 3E+02 0.0065 27.8 6.6 50 111-165 9-58 (407)
69 PF09370 TIM-br_sig_trns: TIM- 20.3 57 0.0012 31.6 1.5 32 117-156 2-33 (268)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=6.1e-122 Score=879.45 Aligned_cols=385 Identities=55% Similarity=0.986 Sum_probs=368.6
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
||||||||+||||||||++||+++|+||||.++|.+....+ ...++.++||+|++.|||+||||+||+||+||+.+++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999999765443 2468899999999999999999999999999999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
|+|+.+|||++++.|++|||||||+|+|++|+++.|+++|.|||++|.||+||||+++||+|||||||+|+.|||+|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
||||.+.+|+|||.++.++++|||||++|++++|.|+||+++++||++|+++|.+.|++++|+|.++|++||++++++|+
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||||++|.||++|.+|||||||+||+.++|+|+++..+..+++.|+.|+++++|+++|+|++|||+.|+|+++++++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
|+++++||++++.++|.|++++||+|+|++||+++|+.||.... ++. |.-.|.+|.|+|+|.|++++
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~---------~~~----~s~~~lsNtTsi~e~fkr~~ 385 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPA---------EVD----VSGCMLSNTTSIAEAFKRID 385 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccc---------cce----eeeEeecCcHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999993221 223 33346788999999999986
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.6e-100 Score=780.36 Aligned_cols=391 Identities=84% Similarity=1.320 Sum_probs=363.7
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||||||||.+||+++|+||+++++|....+...+...+..++||+|+.+++|+|||||||+||++|+++++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322111345789999999999999999999999999999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
|||+.+.+++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999866789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||||.++.||+++++||||||++||++++++|+++.....+++++|.+|++++|+++++|+.++|+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
|++.++++.+++.+++.++++.|++|+|+++++++|+++|...+..-+.+ . -...++++|+++|.+.|+++
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~----~----~~s~~~l~NstsI~~~f~~i 391 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK----V----QRAVCMISNSTAVAEVFSRI 391 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccc----c----ceeEEEecCCcHHHHHHHHH
Confidence 99999999999999998999999999999999999999987655443322 1 13456788999999988876
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.7e-99 Score=770.76 Aligned_cols=391 Identities=81% Similarity=1.310 Sum_probs=363.7
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||||||||.+||+++|+||+++++|....+...+...+..++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322111245788999999999999999999999999999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
||++++++++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999866799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.|+|||+++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
|++.++++.+++.+++.|+++.|++|+|+++|+++|+++|...+...+.+ .-...++++|+++|.+.|+++
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~lsNstsI~~~f~~i 391 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK--------VQRAVCMISNSTAIAEVFSRI 391 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccc--------cceEEEEecCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999997655443322 013456788899999988876
No 4
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=6.3e-97 Score=751.80 Aligned_cols=383 Identities=32% Similarity=0.626 Sum_probs=355.0
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTG 81 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~ 81 (401)
||||+||+||||||||.+||+++|+||+++++|...++.. ...+..++||+|+++++|+||||+||+||++|++++++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999999887654322 13467899999999999999999999999999999999
Q ss_pred ccccccCCceeeeccc--cccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhh
Q 015754 82 SYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSV 159 (401)
Q Consensus 82 ~~~~~f~~~~~i~~~~--g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~d 159 (401)
+++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 9999999999999997 99999999955 69999999999999999999999999999999999999999999999999
Q ss_pred hhCCcceEEEEEecCCCC-CccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhc
Q 015754 160 DYGKKSKLGFTIYPSPQV-STAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSL 238 (401)
Q Consensus 160 eyp~~~i~~~~v~P~~~~-~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 238 (401)
+||++.+++++|+|++.. ++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998764 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhccccccCCccccccccCccccccc-cccccccCHHHHHHHhcCCCCCccccCC-CCCceeccc
Q 015754 239 TTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAA-KAYHEQISVPEITSAVFEPSSMMAKCDP-RHGKYMACC 316 (401)
Q Consensus 239 t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~f~~~~~~~~~~~-~~~~~ls~~ 316 (401)
|+++||||.+|.|++++++||||||++||++++++|+++.. ...++..+|.+|++++|+++++|+.++| +.|+||||+
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5777899999999999999999999999 899999999
Q ss_pred ccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHH
Q 015754 317 LMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQL 396 (401)
Q Consensus 317 ~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (401)
+++||++.++++.+++.++|.+++++|++|+|+++|+++|+++|...++. + ...++++|+++|.+.|
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~---------~----~s~~~lsNst~I~~~f 384 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAH---------R----VSGLMLANHTSIASLF 384 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCC---------c----eeEEEecCChHHHHHH
Confidence 99999999999999999999998899999999999999999988642211 1 2345678888999888
Q ss_pred hhhc
Q 015754 397 TLVD 400 (401)
Q Consensus 397 ~~~~ 400 (401)
+++.
T Consensus 385 ~~i~ 388 (431)
T cd02188 385 ERIL 388 (431)
T ss_pred HHHH
Confidence 8764
No 5
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.3e-96 Score=753.33 Aligned_cols=382 Identities=42% Similarity=0.801 Sum_probs=357.3
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||||||||.+||+++++||+++++|......+. ..++.++||+|+++++|+||||+||+||++|++++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988876443221 235678999999999999999999999999999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
|||+.+.+++|+|++..++++++|||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999876889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||||.+|.|+.++++||||||++||++++++|+++..+..+++++|.+|++++|+++++|+++||+.|+||||++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
|++.++++.+++.++|.+++++|++|+|+++|+++|.++|...+ ...++.+|+|+|.+.|+++.
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~----------------~s~~~lsNstsi~~~~~~i~ 382 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLK----------------MSVTFIGNSTAIQEMFRRVG 382 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCcc----------------ceEEEecCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985321 22345667777877777653
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=3.4e-96 Score=750.22 Aligned_cols=384 Identities=30% Similarity=0.575 Sum_probs=352.2
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||||||||.+||+++|+||+++++|....+... .++..++||+|+++++|+|||||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQ--GGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCcccc--ccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 699999999999999999999999999999988876433221 246789999999999999999999999999999999
Q ss_pred cccccccCCceeeeccc--cccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhh
Q 015754 81 GSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLS 158 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~--g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~ 158 (401)
++++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||+|||||||+|++|+|+|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 99999999999999996 69999999955 7999999999999999999999999999999999999999999999999
Q ss_pred hhhCCcceEEEEEecCCC-CCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhh
Q 015754 159 VDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISS 237 (401)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (401)
|+||++.+++++|+|++. .++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999864 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhccccccCCccccccccCccccccc-cccccccCHHHHHHHhcCCCCCccccCCCC-----Cc
Q 015754 238 LTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAA-KAYHEQISVPEITSAVFEPSSMMAKCDPRH-----GK 311 (401)
Q Consensus 238 ~t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~-----~~ 311 (401)
+|+++||||.+|.|++++++||||||++||++++++|+.... ...++..++.++++++|+++++|+.+||+. |+
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997652 345678899999999999999999999887 99
Q ss_pred eecccccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccc
Q 015754 312 YMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFA 391 (401)
Q Consensus 312 ~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 391 (401)
|||+++++||++.++++.+++.++|.+++++|++|+|+++|+++|+++|...+. .+ +..++++|+|+
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~---~~----------~s~~~lsNst~ 385 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTA---HR----------VSGLMLANHTS 385 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCC---Cc----------eEEEEEeCCHH
Confidence 999999999999999999999999999899999999999999999998864211 00 23456778888
Q ss_pred hHHHHhhhc
Q 015754 392 IPDQLTLVD 400 (401)
Q Consensus 392 ~~~~~~~~~ 400 (401)
|.+.|+++.
T Consensus 386 I~~~f~~i~ 394 (454)
T PLN00222 386 IRHLFSKCL 394 (454)
T ss_pred HHHHHHHHH
Confidence 888887763
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=7.6e-96 Score=746.10 Aligned_cols=390 Identities=76% Similarity=1.254 Sum_probs=363.3
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTG 81 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~ 81 (401)
||||+||+||||||||.+||+++++||+++++|....+...+...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999876443221123467899999999999999999999999999999998
Q ss_pred ccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhh
Q 015754 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDY 161 (401)
Q Consensus 82 ~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~dey 161 (401)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccc
Q 015754 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTS 241 (401)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (401)
|++++.+++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|++.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999998667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccc
Q 015754 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (401)
Q Consensus 242 ~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG 321 (401)
+||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.|+|||+++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 322 DVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
++.++++.+++.+++.++.+.|++|+|+++++++|++||...+..-+.+ .-+..++.+|+|+|.+.|+++
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~l~Nst~i~~~f~~i 390 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK--------VQRAVCMLSNTTAIAEAWSRL 390 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccc--------cceEEEEecCchHHHHHHHHH
Confidence 9999999999999988899999999999999999999997655433322 125667889999999998876
No 8
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=6.1e-95 Score=741.58 Aligned_cols=371 Identities=32% Similarity=0.609 Sum_probs=343.8
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhC-CCCCCCCCCCCCCCCCCCccccccccCC-----CC--CCccceeeeCCCC
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHG-IHPDGTMPSDTSVGACHDAFNTFFSETG-----SG--QHVPRAVFVDLEP 72 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~-i~~~g~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~PRailvD~e~ 72 (401)
|||||+||+||||||||.+||+++|+||+ ++++|.. ++..++||+|.+ ++ +|+||||+||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6776643 346789999532 23 4999999999999
Q ss_pred cccccccccccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHH
Q 015754 73 SVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSL 152 (401)
Q Consensus 73 ~~i~~i~~~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~ 152 (401)
++|++++.++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCC-----------
Q 015754 153 LLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER----------- 221 (401)
Q Consensus 153 lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~----------- 221 (401)
|+|+|+|+||++.+++++|||+. .++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999986 478899999999999999999999999999999999988877663
Q ss_pred ----------------CChhhhHHHHHHHHhhcccccccCCCCccchhhhccccccCCccccccccCccccccccccccc
Q 015754 222 ----------------PNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQ 285 (401)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~ 285 (401)
++|+++|++||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 7899999999999999999999999999999999999999999999999999998877777888
Q ss_pred cCHHHHHHHhcCCCCCccccCCCCCceecccccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCch
Q 015754 286 ISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSF 365 (401)
Q Consensus 286 ~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~ 365 (401)
.+|.+|++++|+++++|+.++|..|+||||++++||++.++++.+.+.++|. .++|++|+|+++|+++|+++|...+
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~- 387 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQP- 387 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCc-
Confidence 9999999999999999999999999999999999999999999999988864 4899999999999999999986433
Q ss_pred hhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 366 LMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 366 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
...++++|+|+|.+.|+++
T Consensus 388 ---------------~s~~~lsNst~I~~~f~~i 406 (465)
T PTZ00387 388 ---------------YSLLCLANNCCIRNKFESM 406 (465)
T ss_pred ---------------eeEEEecCChHHHHHHHHH
Confidence 3456677788888888765
No 9
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.3e-94 Score=740.12 Aligned_cols=381 Identities=41% Similarity=0.804 Sum_probs=355.9
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||||||||.+||+++++||+++++|......+. ..+..++||+|+++++|+||||+||+||++|+++++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999988876443222 235678999999999999999999999999999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
||++.+++++|+|++..++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|.++|++||+.++++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999999867899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||||.++.++.++++||||||++||+.++++|+.......+++++|.+|++++|+++++|++++|..|+|||+++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999887766778999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
|++.++++.+++.+++.+++++|++|+|+++++++|+++|...+ ...+..+|+++|.+.|+++
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~----------------~s~~~l~N~t~i~~~~~~i 381 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLK----------------MASTFIGNSTSIQEMFRRV 381 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcc----------------eeeEEecCchHHHHHHHHH
Confidence 99999999999999988999999999999999999999886422 2234566677777777665
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3e-94 Score=733.08 Aligned_cols=380 Identities=41% Similarity=0.805 Sum_probs=353.2
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTG 81 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~ 81 (401)
||||+||+||||||||.+||+++|+||+++++|......+. ..+..++||+|+++++|+||||+||+||++|++++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDL--QLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccc--cccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 79999999999999999999999999999988865433221 2356789999999999999999999999999999998
Q ss_pred ccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhh
Q 015754 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDY 161 (401)
Q Consensus 82 ~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~dey 161 (401)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccc
Q 015754 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTS 241 (401)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (401)
|++.+++++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999998767999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccc
Q 015754 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (401)
Q Consensus 242 ~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG 321 (401)
+||||.+|.|+.++++||||||++||++++++|+++.....++.+++.+|++++|+++++|++++|+.|+|||+++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877677788999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 322 DVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
++.++++.+++.+++.++++.|++|+|+++++++|+++|...+ ...+..+|+++|.+.|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~----------------~s~~~l~N~t~i~~~~~~i 380 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLK----------------MSATFIGNSTAIQELFKRI 380 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcc----------------eeEEEecCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999885321 2234455667777777665
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=1e-92 Score=679.01 Aligned_cols=380 Identities=33% Similarity=0.631 Sum_probs=349.6
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
+|||||+|+||||||||.+||+++|.||||.++|.++.... +..++.++||+|..++.|+|||||||+||+||+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 68999999999999999999999999999999999765443 3457899999999999999999999999999999999
Q ss_pred cccccccCCceeeecc--ccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhh
Q 015754 81 GSYRQLFHPEQLISGK--EDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLS 158 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~--~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~ 158 (401)
++|+.+|+|+|++..+ .|||||||.|| .+|++..|+|+|.|+|++|.||+|+||+++||++||||||+||.|+|+|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 9999999999997764 58999999995 56999999999999999999999999999999999999999999999999
Q ss_pred hhhCCcceEEEEEecCCC-CCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhh
Q 015754 159 VDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISS 237 (401)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (401)
|+||||.+.+++|||... .+|++|||||++|+|++|.+.+|+++++||.||.++|.+.+.+++|+|.++|++||.+|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999974 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhccccccCCccccccccCccccccccccc--cccCHHHHHHHhcCCCCCccccCC---CCCce
Q 015754 238 LTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYH--EQISVPEITSAVFEPSSMMAKCDP---RHGKY 312 (401)
Q Consensus 238 ~t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~--~~~t~~~l~~~~f~~~~~~~~~~~---~~~~~ 312 (401)
.|.++||||+++.+|..|...|+|+|++||++++|.|+++...... +..|+.+.+++++.++++|+...+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998765544 778899999999999999998765 33479
Q ss_pred ecccccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeeccccccccc
Q 015754 313 MACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVF 390 (401)
Q Consensus 313 ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 390 (401)
++...++.|.+.+.++.+++.+++.++..+|+.|.|..+++++.+..|+..+. +.|..++..|.|++.+.|
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-------~~vSglml~N~t~i~~lf 389 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-------HRVSGLMLANSTSIVSLF 389 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-------cceeeeeeccchhHHHHH
Confidence 99999999999999999999999999999999999999999999888876542 345566666666665544
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=6.7e-86 Score=675.07 Aligned_cols=370 Identities=26% Similarity=0.446 Sum_probs=331.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccccc
Q 015754 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSY 83 (401)
Q Consensus 4 IItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~ 83 (401)
||+||+||||||||.+||+++++||+++++|... ...+..++||+|..+++|+||||+||+||++|++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 8999999999999999999999999998877542 1245789999999999999999999999999999998764
Q ss_pred c--cccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhh
Q 015754 84 R--QLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDY 161 (401)
Q Consensus 84 ~--~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~dey 161 (401)
+ ++|+|++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccc
Q 015754 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTS 241 (401)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (401)
|++.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|+++|.+.++++.++|.++|++||++|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999976 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-C-------CCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhc---CCCCCccc------
Q 015754 242 LRF-D-------GAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVF---EPSSMMAK------ 304 (401)
Q Consensus 242 ~Rf-~-------g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f---~~~~~~~~------ 304 (401)
.|| + |..+.|++++++||||||++||++++++|+++..+..++.++|.+|+++++ .++++|..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 987 5 346899999999999999999999999999987777789999999999977 56666655
Q ss_pred -------------cCCCCCceecccccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhh
Q 015754 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKC 371 (401)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~ 371 (401)
++++.++|||+++++||+..++++...+ ++.+.|++|+|+++++++|+++|.....
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~------ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKY------ 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCc------
Confidence 4678899999999999998888876543 4678999999999999999998853110
Q ss_pred hcccceeeeecccccccccchHHHHhhh
Q 015754 372 MHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
-...++.+++++|.+.|+++
T Consensus 384 --------~~s~~~l~Nst~i~~~l~~i 403 (446)
T cd02189 384 --------EKSVTLVSNSQTIIDPLDNI 403 (446)
T ss_pred --------ceeEEEEeCCchHHHHHHHH
Confidence 12334556667777666654
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=6.6e-86 Score=662.44 Aligned_cols=336 Identities=35% Similarity=0.685 Sum_probs=317.2
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTG 81 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~ 81 (401)
||||+||+||||||||.+||+++++|| |+||||+||+||++|++++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999888 679999999999999999999
Q ss_pred ccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhh
Q 015754 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDY 161 (401)
Q Consensus 82 ~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~dey 161 (401)
+++++|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccc
Q 015754 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTS 241 (401)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (401)
|++.+++++|+|+.. ++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 788999999999999999999999999999998 6999999999999999999
Q ss_pred cccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccc
Q 015754 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (401)
Q Consensus 242 ~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG 321 (401)
+||||.+|.|+.++.+||||||++||++++++|+++.....++..++.+|++++|+++++|+.+||+.|+|||+++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777788999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 322 DVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
++.+.++.+++.+++.+ ++|++|+|+++++++|+++|...+ ...++++|+|+|.+.|+++.
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~----------------~s~~~lsNsTsI~~~f~~i~ 336 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHS----------------YSLLCLANNTCIKGTFTELK 336 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcc----------------eeEEEecCccHHHHHHHHHH
Confidence 99999999999888765 689999999999999999885321 23456778888888887763
No 14
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=9.4e-86 Score=629.34 Aligned_cols=370 Identities=76% Similarity=1.246 Sum_probs=356.3
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|||||+||+||+|.|||+++|+++|.||+|.++|..+.+.+....++.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988765544455678999999999999999999999999 999999
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
|.|+.+|||+++++|+++++||+|+|+|+.|+|++|..+++||+.++.|..||||.++||+|||||||+++.++|.|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
|+||..+.+++||.+..++.+++|||++|+.+...+++|++++.||++.+++|.+.+.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (401)
Q Consensus 241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R 320 (401)
++||.|.+|.||.+++||||||| + |+|+.+..+..+++.++.++++++|++.|+|++|||+.|||+|||++||
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 9999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
|++.|+++..++..+|.|++++||+ +.+++..||+ |+|++|| .++.|||.|-..++|
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lak----v~Ravcm----lsnttai~eawarld 369 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAK----VQRAVCM----LSNTTAIAEAWARLD 369 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhh----hceeeEe----cCCCcHHHHHHhhcc
Confidence 9999999999999999999999998 3468899998 8999999 679999999998887
Q ss_pred C
Q 015754 401 Q 401 (401)
Q Consensus 401 ~ 401 (401)
.
T Consensus 370 ~ 370 (407)
T KOG1376|consen 370 H 370 (407)
T ss_pred h
Confidence 3
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.5e-77 Score=604.51 Aligned_cols=338 Identities=47% Similarity=0.820 Sum_probs=318.2
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccccc
Q 015754 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGS 82 (401)
Q Consensus 3 EIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~ 82 (401)
|||+||+||||||||.+||+++ |+||+||++++.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999983 99999999999999988
Q ss_pred cccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhC
Q 015754 83 YRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYG 162 (401)
Q Consensus 83 ~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp 162 (401)
.+.+|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccccc
Q 015754 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSL 242 (401)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (401)
++.+++++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999987656899999999999999999999999999999999999888989999999999999999999999
Q ss_pred ccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccccc
Q 015754 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (401)
Q Consensus 243 Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (401)
||||.+|.|+++++++|||||++||++++++|+++.....++..++.++++++|+++++|+.++++.|+||++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998776677889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCC-cCchhhhhhhhcccceeeeecccccccccchHHHHhhh
Q 015754 323 VVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNII-KHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLV 399 (401)
Q Consensus 323 ~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~-~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
+.++++.+.+.++|.+..+. +|+|+++++++|+++|. ..+ ...++.+|+++|.+.|+++
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~----------------~s~~~l~Nstsi~~~l~~i 339 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELG----------------KSALFLSNSTSIGESLERL 339 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcc----------------eeEEEecCchHHHHHHHHH
Confidence 99999999998888776654 89999999999999885 211 3456778888888888776
No 16
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2.8e-69 Score=534.49 Aligned_cols=315 Identities=45% Similarity=0.820 Sum_probs=298.6
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccccc
Q 015754 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGS 82 (401)
Q Consensus 3 EIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~ 82 (401)
|||+||+||||||||++||+++ |+||+|+++++.++.++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999871 99999999999999888
Q ss_pred cccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhC
Q 015754 83 YRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYG 162 (401)
Q Consensus 83 ~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp 162 (401)
.+.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|+|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccccc
Q 015754 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSL 242 (401)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (401)
++++++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999998543 699999999999999999999999999999999998888888999999999999999999999
Q ss_pred ccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccccc
Q 015754 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (401)
Q Consensus 243 Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (401)
||||.+|.|++++.++|+|+|++||++++++|+.......++..++.++++++|+++++++.++++.++|+++++++||+
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987666667788999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCC
Q 015754 323 VVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNII 361 (401)
Q Consensus 323 ~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~ 361 (401)
.+.+++.+.+..++.+..+. +|+|+++++++|..+|.
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~ 315 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA 315 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC
Confidence 99999999999888776555 99999999999998875
No 17
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=6.9e-58 Score=439.64 Aligned_cols=300 Identities=39% Similarity=0.775 Sum_probs=284.1
Q ss_pred CCCccccccccCCCCCCccceeeeCCCCcccccccccccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHH
Q 015754 45 CHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRK 124 (401)
Q Consensus 45 ~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~ 124 (401)
...+.+++|.+...++|+||+|+||+||++++++++++++.+|+|++ +++| .|||+.|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 34578999999988899999999999999999999999999999998 4443 8999999998777
Q ss_pred HhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhc
Q 015754 125 LADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 204 (401)
Q Consensus 125 ~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~ 204 (401)
.||++|||+++||++||||||+|+++++.++++||.+...+++++|++. ++++++|||+.|+++.|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred chHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccccCCCCccchhhhccccccCCccccccccCcccccccccccc
Q 015754 205 DNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHE 284 (401)
Q Consensus 205 dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~ 284 (401)
||++|+++|.+.+.+..++ ++|.++||||++|.|+.++..|+||+|++||+.++++|++......++
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999988877 899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHhcCCCCCccccCCCCCceecccccccccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCc
Q 015754 285 QISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHS 364 (401)
Q Consensus 285 ~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~ 364 (401)
..++++|+++.|+.+|+|..|| |++++.++|| +.+++++.+..++.|.+.+|++|+|+++|+++|..||.+.+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glk 286 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLK 286 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccc
Confidence 9999999999999999999987 9999999999 89999999999999999999999999999999999996544
Q ss_pred hhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 365 FLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 365 ~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
|..+|+++.+||||+|+++-
T Consensus 287 ----------------ms~tf~~n~taiqelf~~i~ 306 (369)
T KOG1375|consen 287 ----------------MSSTFIGNNTAIQELFRCIS 306 (369)
T ss_pred ----------------ccccccccchhHHHHHHHhh
Confidence 88899999999999998763
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=3e-53 Score=396.42 Aligned_cols=216 Identities=47% Similarity=0.868 Sum_probs=202.5
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccccc
Q 015754 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGS 82 (401)
Q Consensus 3 EIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~ 82 (401)
|||+||+||||||||.+||+++++||+++++... .....+.++||+|..+++|+||+|+||+|++++++++.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKS------QYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSS------STTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccccc------ccccccccceeeeccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999887211 1246678999999999999999999999999999999888
Q ss_pred cccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhC
Q 015754 83 YRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYG 162 (401)
Q Consensus 83 ~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp 162 (401)
.+.+|++++++.+++|+||||++||+..|+++.++++|+||+++|+||.+++|+++||+|||||||+++.|+++|+++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhh
Q 015754 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTN 226 (401)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~ 226 (401)
++++++++|+|+. .+.++++||++++|++|.+++|+++++||++|.++|.+.+++++|+|++
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 9999999999994 3899999999999999999999999999999999999999999888863
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.7e-42 Score=355.41 Aligned_cols=305 Identities=20% Similarity=0.256 Sum_probs=229.1
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCC----CCCCccceeeeCCCCccccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETG----SGQHVPRAVFVDLEPSVIDE 77 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~----~~~~~PRailvD~e~~~i~~ 77 (401)
|||||||+||++|+||+||||. ||..+.+++... ....+++++|+++. ..+|+||+|++|++++....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL--QEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhh--hhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999 777665442211 13567899999964 56899999999999987643
Q ss_pred ccccc----------------cccccCCceeeecc-----ccccCCCCCCccc---cchhhHHHHHHHHHHHhhhcCCcc
Q 015754 78 VRTGS----------------YRQLFHPEQLISGK-----EDAANNFARGHYT---VGREIVDLCLDRVRKLADNCTGLQ 133 (401)
Q Consensus 78 i~~~~----------------~~~~f~~~~~i~~~-----~g~gnnwa~G~~~---~G~~~~d~~~d~iR~~~E~cD~lq 133 (401)
.+.|. .+..|||+++..-. .+.+++|+.|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 33222 13569999997653 2556677777543 355678999999999999999999
Q ss_pred ceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC----CccchhhhHHHHHHHHHHhhcccchhcchHH-
Q 015754 134 GFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV----STAVVEPYNSVLSTHSLLEHTDVAVLLDNEA- 208 (401)
Q Consensus 134 gf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~----~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~a- 208 (401)
|||+++|++||| ||+|+.++|+|+|||||+.+++++++|.+.. .+.++++||++|++++|.+++|+++|+.-..
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997532 2578999999999999999999999997442
Q ss_pred HHHhh-----hccCCCCCCChhhhHHHHHHHHhhcccccccCCCCccchhhhccccccCCccccccccCc-ccccccccc
Q 015754 209 IYDIC-----RRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYA-PVISAAKAY 282 (401)
Q Consensus 209 l~~~~-----~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~-P~~~~~~~~ 282 (401)
++... ...+.++.....+..+++|.+|.++|.++|..+.. .+|.+|+.+|.+.-| |+...+.+ |+-..
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 22211 12234445567788999999999999999998765 579999999997554 77665543 43221
Q ss_pred ccccCHHHHHHHhcCCCC-CccccC-CCCCceeccccccccc
Q 015754 283 HEQISVPEITSAVFEPSS-MMAKCD-PRHGKYMACCLMYRGD 322 (401)
Q Consensus 283 ~~~~t~~~l~~~~f~~~~-~~~~~~-~~~~~~ls~~~~~RG~ 322 (401)
...++.++..++-+..- ..+.++ +....+.+..++.||-
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~ 346 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGI 346 (493)
T ss_pred -CCCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCC
Confidence 22345555555422111 222332 2346788888999995
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=6.5e-39 Score=294.46 Aligned_cols=185 Identities=40% Similarity=0.682 Sum_probs=172.7
Q ss_pred cccccCCCCCCccceeeeCCCCcccccccccccccccCCceeeeccccccCCCCCCccc-----cchhhHHHHHHHHHHH
Q 015754 51 TFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYT-----VGREIVDLCLDRVRKL 125 (401)
Q Consensus 51 ~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~~~~f~~~~~i~~~~g~gnnwa~G~~~-----~G~~~~d~~~d~iR~~ 125 (401)
.+|.++ ++.||+|++|+|+++++.+..++.+..|++++.+.++.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456664 78999999999999999998777788899999999999999999999998 8999999999999999
Q ss_pred hhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcc
Q 015754 126 ADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD 205 (401)
Q Consensus 126 ~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~d 205 (401)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++++|. ..|.++++||+++++++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 36889999999999999999999999999
Q ss_pred hHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccccCC
Q 015754 206 NEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDG 246 (401)
Q Consensus 206 N~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g 246 (401)
|++|.++|.+.+.+ .++|.++|++||++|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887766 67999999999999999999999986
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.8e-33 Score=279.79 Aligned_cols=289 Identities=18% Similarity=0.253 Sum_probs=220.9
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT 80 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~ 80 (401)
|| |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+|+..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 55 78899999999999999875 00 0113689999999999999987754
Q ss_pred cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCC--ccceeEEEecCCCccCCchHHHHHHhh
Q 015754 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTG--LQGFLVFSAVGGGTGSGLGSLLLERLS 158 (401)
Q Consensus 81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~--lqgf~~~~sl~GGtGSG~gs~lle~L~ 158 (401)
.+.|+.++.|++.+.+..+.|.+..|+++.++..|.||+++|.||. +|+|+++||+|||||||+++.+++.++
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lk 124 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELK 124 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHH
Confidence 3468888888764333334444456899999999999999999997 999999999999999999999999999
Q ss_pred hhhCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhc
Q 015754 159 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSL 238 (401)
Q Consensus 159 deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 238 (401)
++|+ +++++++++|+.. +..+++||+++++++|.+++|.++++||++|+++|.. + .+.|..+|++||+.|+.+
T Consensus 125 e~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l 197 (349)
T cd02202 125 ERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLL 197 (349)
T ss_pred HhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999974 5689999999999999999999999999999998742 2 368999999999999999
Q ss_pred cccccc-----CCCCccchhhhccccccCCccccccccCccccccc--------------c--ccccccCHHHHHHHhcC
Q 015754 239 TTSLRF-----DGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAA--------------K--AYHEQISVPEITSAVFE 297 (401)
Q Consensus 239 t~~~Rf-----~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~--------------~--~~~~~~t~~~l~~~~f~ 297 (401)
+.+.|| ||.+|.|++++.++|... .+.+..++--.... . .....-...+++++...
T Consensus 198 ~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~a~~~a~~ 274 (349)
T cd02202 198 LRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYAREDLETGPSDGKFRLREEDDEVDEKESISRITTLARKAAY 274 (349)
T ss_pred HHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEEEEcccccccccccccccccccccccchhhHHHHHHHHHHc
Confidence 999999 999999999999999865 56666654221100 0 00001112344444332
Q ss_pred CCCCccccCCCCCceecccccccc---cCChhhHHHHHHHHhhh
Q 015754 298 PSSMMAKCDPRHGKYMACCLMYRG---DVVPKDVNTAVATIKTK 338 (401)
Q Consensus 298 ~~~~~~~~~~~~~~~ls~~~~~RG---~~~~~~i~~~~~~~k~~ 338 (401)
. ..+.++|....+- ..+.+-| .++.+++++..+.+..+
T Consensus 275 ~-~L~~~~d~~~A~~--~Li~i~g~~~~l~~~~~~~~~~~i~~~ 315 (349)
T cd02202 275 G-ELTVPCDLTSADR--ALIVIAGPPEELSRKGIEDGRKWLDEE 315 (349)
T ss_pred C-CCCCCCCcccCcE--EEEEEEeCccccCHHHHHHHHHHHHHH
Confidence 2 2234566655433 2334455 36778888887766554
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.98 E-value=7.3e-33 Score=271.88 Aligned_cols=237 Identities=24% Similarity=0.368 Sum_probs=175.5
Q ss_pred CEeEEEEecCCchhHHHHHHHHHHHHhhCCC--CCCCCCCCCCCCCCCCcc-ccccccCCC----CCCccceeeeCCCCc
Q 015754 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIH--PDGTMPSDTSVGACHDAF-NTFFSETGS----GQHVPRAVFVDLEPS 73 (401)
Q Consensus 1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~--~~g~~~~~~~~~~~~~~~-~~~F~e~~~----~~~~PRailvD~e~~ 73 (401)
||||+|||+|+.+|++|+||||+ ||..+. .+.+.+. ..... |+|++.++. -+|+||+|++|+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~--Qea~l~~~~d~~~~~------~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~ 72 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ--QEAYLGLATDSEEPP------GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGE 72 (483)
T ss_pred CceEEEEEeeccccchhhhhcch--hhHhhccCCcccCCh------hhcCcchhhhhccccccCceeeccceeEEecCcc
Confidence 99999999999999999999999 776553 3322111 11222 899998743 489999999999997
Q ss_pred ccccccccc-------------------------------------------------------------------cccc
Q 015754 74 VIDEVRTGS-------------------------------------------------------------------YRQL 86 (401)
Q Consensus 74 ~i~~i~~~~-------------------------------------------------------------------~~~~ 86 (401)
.....-.+. .+..
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~ 152 (483)
T KOG2530|consen 73 LGTLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNH 152 (483)
T ss_pred ccccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhh
Confidence 652211100 0256
Q ss_pred cCCceeeeccccccCCCCCCccccchhh------HHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754 87 FHPEQLISGKEDAANNFARGHYTVGREI------VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 160 (401)
Q Consensus 87 f~~~~~i~~~~g~gnnwa~G~~~~G~~~------~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de 160 (401)
|||+.+..-+...-|--|.+.|..|.+. .+++-|+||.++|+||.+|||+++.++.+||| |+++.++|+|+||
T Consensus 153 yHp~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DE 231 (483)
T KOG2530|consen 153 YHPRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDE 231 (483)
T ss_pred cCccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHh
Confidence 8999886544322222224445555544 47899999999999999999999999999996 9999999999999
Q ss_pred hCCcceEEEEEecCCCC-Cccch---h---hhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHH
Q 015754 161 YGKKSKLGFTIYPSPQV-STAVV---E---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQ 233 (401)
Q Consensus 161 yp~~~i~~~~v~P~~~~-~~~~v---~---~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~ 233 (401)
|+++.++++++.|.+.. ++... . ..|.+|++++|.+.|++++|+.--. .++ ...+..+++|.
T Consensus 232 ys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~ 300 (483)
T KOG2530|consen 232 YSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLAR 300 (483)
T ss_pred hcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHh
Confidence 99999999999986432 22222 2 5689999999999999999983222 111 35678899999
Q ss_pred HHhhcccccccCCCCccchhhhcc
Q 015754 234 IISSLTTSLRFDGAINVDITEFQT 257 (401)
Q Consensus 234 ~i~~~t~~~Rf~g~~n~~l~~l~~ 257 (401)
++.++|.|.|.-++.|.-+.++++
T Consensus 301 ~~ds~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 301 AFDSITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred hcccccccceecchhHHHHHHHHH
Confidence 999999999998875555554443
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=4.9e-28 Score=236.62 Aligned_cols=270 Identities=16% Similarity=0.225 Sum_probs=200.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccccc
Q 015754 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSY 83 (401)
Q Consensus 4 IItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~ 83 (401)
|..|.+|+||+.+-+++++. ++ .-.+.+++|++...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~------------------------------~~~~~iainTd~~~L~~~~a-~~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK------------------------------EGRSAVAVNTDAQDLLGLEA-EN 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC------------------------------CCccEEEEECcHHHHhcCCC-Cc
Confidence 77899999999999998764 00 01467999999988776542 11
Q ss_pred ccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCC
Q 015754 84 RQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGK 163 (401)
Q Consensus 84 ~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~ 163 (401)
+-++.++ .+...|+|+||.. |++..++.+|+||+.+|.||. |++++++|||||||+++.+++.++++|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 2222211 1233589999865 468999999999999999994 8999999999999999999999999985
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccc
Q 015754 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLR 243 (401)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~R 243 (401)
.+++|+|.|...|..+++||+.+++++|.+++|.++++||++|.++|.+ +.+. ..|+.+|++||+.++++|..+|
T Consensus 116 ---~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 ---LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred ---CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555554468899999999999999999999999999999999976 7775 4999999999999999999999
Q ss_pred cCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccc--
Q 015754 244 FDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRG-- 321 (401)
Q Consensus 244 f~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG-- 321 (401)
+||.+|.|++++.+.|- -..+-++....+. ..-...+.+++.++.. .+-.++.+..+-+- +.+.|
T Consensus 191 ~~g~invD~~dv~~~l~-~~G~a~ig~g~~~---------g~~~~~~a~~~Al~~p-ll~~~~~~~A~~~L--v~i~g~~ 257 (303)
T cd02191 191 IEGEINVDFADVKNVMD-GGGVAMVGYGSED---------VTNRATEAVRKAALGP-LLLPCEIEGAEGAL--LVMAGPP 257 (303)
T ss_pred cCCcccCCHHHHHHHhc-cCCeEEEEEEEec---------CchHHHHHHHHHHhCC-CCCCCCcccCCEEE--EEEECCC
Confidence 99999999999988774 3333333222121 1123445555554422 12224455444332 23344
Q ss_pred cCChhhHHHHHHHHhhh
Q 015754 322 DVVPKDVNTAVATIKTK 338 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~ 338 (401)
+++.+++++..+.++.+
T Consensus 258 ~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 258 DLNLKEIERVRKWLEEQ 274 (303)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 57888999988777654
No 24
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.94 E-value=2.6e-27 Score=203.26 Aligned_cols=125 Identities=46% Similarity=0.812 Sum_probs=109.1
Q ss_pred CccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccccCChhhHHHHHHHHhhhcccc
Q 015754 263 PRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQ 342 (401)
Q Consensus 263 p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~ 342 (401)
||+|||+++|+|+.......++..++.||++++|+++|+|+++||++|+||||+++|||+++++||++++.++|.+.+++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754 343 FVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD 400 (401)
Q Consensus 343 fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (401)
|++|+|++||+|+|++||.+.+.+ . .+....+|.|||.+.|++|+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s---~----------~s~~~LsNsTaI~~~f~~i~ 125 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS---D----------RSGLMLSNSTAIAEVFSRIS 125 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS---S----------EEEEEEEEEGGGHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC---c----------ceEEEeCChHHHHHHHHHhc
Confidence 999999999999999999987655 1 22334566789999998874
No 25
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=3.7e-26 Score=226.97 Aligned_cols=274 Identities=14% Similarity=0.216 Sum_probs=192.5
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccccc
Q 015754 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSY 83 (401)
Q Consensus 4 IItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~ 83 (401)
|..|.+|+||+.+-+++++. + ..-...+.+|+|...++.+.. +.
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~------------------------------~~~~~~iainTD~~~L~~~~a-~~ 63 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----G------------------------------VEGVEFIAINTDAQHLKTTKA-DK 63 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----C------------------------------CCceEEEEEECCHHHHhcCCC-Ce
Confidence 77899999999999998764 0 011467889998877665532 11
Q ss_pred ccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCC
Q 015754 84 RQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGK 163 (401)
Q Consensus 84 ~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~ 163 (401)
+-++.++ .++..|+|+||+. |++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.++ +|+
T Consensus 64 ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~- 131 (349)
T TIGR00065 64 KILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG- 131 (349)
T ss_pred EEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-
Confidence 2222211 1223478888774 6899999999999999999985 99999999999999886666555 564
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccc
Q 015754 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLR 243 (401)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~R 243 (401)
+..+++.++|+. .|..+++||+.+++++|.+++|+++++||++|.++|.+ +.+.. .|+.+|.+||+.+.++|.++|
T Consensus 132 ~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir 207 (349)
T TIGR00065 132 ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELIT 207 (349)
T ss_pred CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhc
Confidence 444444455554 67899999999999999999999999999999999977 77755 999999999999999999999
Q ss_pred cCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccC-CCCCceeccccccccc
Q 015754 244 FDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCD-PRHGKYMACCLMYRGD 322 (401)
Q Consensus 244 f~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~-~~~~~~ls~~~~~RG~ 322 (401)
+||.+|.|+.++.+-|-- +..-++...-+.- . ...-...+-+++.... .++..+ .+..+-+-..+...-+
T Consensus 208 ~~g~iNvDf~dv~~vl~~-~G~a~iG~g~~~g----~--~~~~r~~~A~~~al~~--pLl~~~~i~~A~~~Lv~i~~~~~ 278 (349)
T TIGR00065 208 KPGLINIDFADVRAVMSG-GGVAMMGIGEALG----E--DTANRAFEAVRKALSS--PLLDVDKISGAKGALVHITGGAD 278 (349)
T ss_pred cCCcCcCCHHHHHHHHhc-CCeEEEEEEEecC----C--cchHHHHHHHHHHHhC--CCcCCcccccccEEEEEEEcCCC
Confidence 999999999999877643 3333333322220 0 0000234444444432 233322 4443433222222225
Q ss_pred CChhhHHHHHHHHhhh
Q 015754 323 VVPKDVNTAVATIKTK 338 (401)
Q Consensus 323 ~~~~~i~~~~~~~k~~ 338 (401)
+...|+++.+..++.+
T Consensus 279 l~l~ev~~~~~~i~~~ 294 (349)
T TIGR00065 279 LTLLEAEEIQEIITSE 294 (349)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7888999988777653
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.93 E-value=3e-26 Score=224.68 Aligned_cols=272 Identities=15% Similarity=0.244 Sum_probs=195.5
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccccc
Q 015754 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSY 83 (401)
Q Consensus 4 IItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~ 83 (401)
|..|.+|+||+.+-+++++. ++ .+ ...+.+|+|...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999998764 00 01 457899998887766542 22
Q ss_pred ccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCC
Q 015754 84 RQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGK 163 (401)
Q Consensus 84 ~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~ 163 (401)
+-++.++ .+...|+|+||+.| ++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++..+ +|+
T Consensus 47 k~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g- 114 (304)
T cd02201 47 KIQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG- 114 (304)
T ss_pred EEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-
Confidence 2233322 13345888888755 678899999999999999985 99999999999999999776555 565
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccc
Q 015754 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLR 243 (401)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~R 243 (401)
+..+++.+.|+. .|..+++||+.+++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++.++++|.++|
T Consensus 115 ~~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 355555556654 57789999999999999999999999999999999987777766 899999999999999999999
Q ss_pred cCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCcc-ccCCCCCceeccccccccc
Q 015754 244 FDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMA-KCDPRHGKYMACCLMYRGD 322 (401)
Q Consensus 244 f~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~-~~~~~~~~~ls~~~~~RG~ 322 (401)
+||.+|.|++++.+.|-.-.. -++....+. . .-...+.+++.++.. ++ ..+.+..+.+-..+...-+
T Consensus 192 ~~g~invD~~dv~~vl~~~G~-a~ig~g~~~----g-----~~r~~~Av~~Al~~p--Ll~~~~i~~A~~~Lv~I~~~~~ 259 (304)
T cd02201 192 KPGLINLDFADVKTVMKNKGV-ALMGIGEAS----G-----ENRAIEAAEKAISSP--LLEDDSISGAKGVLVNITGGSD 259 (304)
T ss_pred cCccccCCHHHHHHHhccCCe-EEEEEEEec----C-----chHHHHHHHHHHhCc--CcCCCChhcccEEEEEEEcCCC
Confidence 999999999999988864322 222111111 0 112344444444332 22 2234443433322222225
Q ss_pred CChhhHHHHHHHHhhh
Q 015754 323 VVPKDVNTAVATIKTK 338 (401)
Q Consensus 323 ~~~~~i~~~~~~~k~~ 338 (401)
++..|+++.+..++.+
T Consensus 260 l~l~e~~~~~~~i~~~ 275 (304)
T cd02201 260 LTLEEVNEAAEIIKEK 275 (304)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7788998888777654
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.92 E-value=3.1e-24 Score=214.24 Aligned_cols=269 Identities=20% Similarity=0.305 Sum_probs=198.4
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCccccccccccc
Q 015754 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSY 83 (401)
Q Consensus 4 IItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~~ 83 (401)
|..|.+|+||+.+-+++++. ++ .+ ...|.+|+|...++.+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 67899999999999998764 00 01 3568999998776654321 1
Q ss_pred ccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCC
Q 015754 84 RQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGK 163 (401)
Q Consensus 84 ~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~ 163 (401)
+-++.++ ++...|+|++|.. |++..++.+|.||+.+|.||. |++++|+|||||||+++.+++.+++ ++
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~-----G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEV-----GRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHH-----HHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-
Confidence 1122111 1223477777655 567788899999999999997 8999999999999999999999987 44
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccc
Q 015754 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLR 243 (401)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~R 243 (401)
...+++++.|+. .+...+..|+.+++++|.+++|+++++||++|.++| +.+.+.. .|+.+|++|++.+.++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 556788889987 467889999999999999999999999999999999 7777764 899999999999999999999
Q ss_pred cCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceecccccccc--
Q 015754 244 FDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRG-- 321 (401)
Q Consensus 244 f~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~RG-- 321 (401)
+||.+|.|++++.+-|-- ..+-++....+. ..-...+.+++.+... ++.+++...+-+- +.+.|
T Consensus 219 ~~G~iN~Df~dv~~vl~~-~G~a~iG~G~a~---------g~~r~~~Av~~Al~sp--LL~~di~~A~~~L--v~I~g~~ 284 (378)
T PRK13018 219 KPSLINLDFADVKSVMKG-GGVAMMGVGEAK---------GQNRAMEAVRAALANP--LLDVDYRGAKGAL--VHITGGP 284 (378)
T ss_pred cCCceecCHHHHHHHhcc-CCEEEEEEEEec---------CCcHHHHHHHHHHhCC--CcCCChhhhceEE--EEEECCC
Confidence 999999999999877642 222222222111 1123455555555443 4556665544332 33444
Q ss_pred cCChhhHHHHHHHHhhh
Q 015754 322 DVVPKDVNTAVATIKTK 338 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~ 338 (401)
+++..++++....++.+
T Consensus 285 ~l~l~ev~~~~~~i~~~ 301 (378)
T PRK13018 285 DLTLKEANEAASRITEE 301 (378)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67888998888777654
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.88 E-value=3e-22 Score=181.48 Aligned_cols=149 Identities=27% Similarity=0.419 Sum_probs=113.3
Q ss_pred ccccCCceeeecccc--ccCCCCCCccccchhhH------HHHHHH-HHHHhhhcCCccceeEEEecCCCccCCchHHHH
Q 015754 84 RQLFHPEQLISGKED--AANNFARGHYTVGREIV------DLCLDR-VRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLL 154 (401)
Q Consensus 84 ~~~f~~~~~i~~~~g--~gnnwa~G~~~~G~~~~------d~~~d~-iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~ll 154 (401)
+-.|||+++..-.+- .+++-...-|..|.+.+ ++++|+ ||+++|+||.+||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 567899988766542 12222333355565544 456665 9999999999999999999999996 9999999
Q ss_pred HHhhhhhCCcce-EEEEEecCCCCCc-----cchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhH
Q 015754 155 ERLSVDYGKKSK-LGFTIYPSPQVST-----AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLN 228 (401)
Q Consensus 155 e~L~deyp~~~i-~~~~v~P~~~~~~-----~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N 228 (401)
|+|+|||||+++ +.+++.+...... ...+.+|.++++.+|.++|++++|+.... +..+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5566554432111 22456899999999999999999996200 234567999
Q ss_pred HHHHHHHhhccccccc
Q 015754 229 RLISQIISSLTTSLRF 244 (401)
Q Consensus 229 ~~ia~~i~~~t~~~Rf 244 (401)
+++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999994
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.87 E-value=4.1e-22 Score=199.20 Aligned_cols=273 Identities=16% Similarity=0.249 Sum_probs=194.6
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccccc
Q 015754 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGS 82 (401)
Q Consensus 3 EIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~~~ 82 (401)
.|-.|.+|.||+.+-+++++. ++ .+ ...+.+|+|...++.+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998764 10 01 2458899988776554321
Q ss_pred cccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhC
Q 015754 83 YRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYG 162 (401)
Q Consensus 83 ~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp 162 (401)
.+-++.++ ++...|+|+||. .|++..++.+|.||+.+|.||.+ ++++++|||||||.++ ++..+..||+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC
Confidence 12222221 122347888866 66899999999999999999988 9999999999999999 5556666775
Q ss_pred CcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccccc
Q 015754 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSL 242 (401)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (401)
+++++|+|.|...|..+++||+.++|++|.+++|.+|++||++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55666666555578899999999999999999999999999999999987777765 89999999999999999999
Q ss_pred ccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccc-cCCCCCceecccccccc
Q 015754 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAK-CDPRHGKYMACCLMYRG 321 (401)
Q Consensus 243 Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~-~~~~~~~~ls~~~~~RG 321 (401)
++||.+|.|+.++.+-|-- ...-++....+. ..-...+-+++..+ +.++. ++....+-+-+.+...-
T Consensus 204 ~~pG~iNvDfaDvk~vm~~-~G~a~~G~G~a~---------g~~ra~~A~~~Ai~--spLl~~~~i~~A~~vLv~I~g~~ 271 (384)
T PRK09330 204 TKPGLINLDFADVKTVMSE-MGLAMMGIGEAS---------GEDRAREAAEKAIS--SPLLEDVDISGAKGVLVNITGGP 271 (384)
T ss_pred hcCCcccCCHHHHHHHHhc-CCeEEEEEEEec---------CccHHHHHHHHHHh--CcCcCCCChhhcceEEEEEECCC
Confidence 9999999999999876642 222222222221 01123333444442 22332 44444443333322222
Q ss_pred cCChhhHHHHHHHHhhh
Q 015754 322 DVVPKDVNTAVATIKTK 338 (401)
Q Consensus 322 ~~~~~~i~~~~~~~k~~ 338 (401)
+++..|+++.+..++.+
T Consensus 272 ~l~l~e~~~~~~~i~~~ 288 (384)
T PRK09330 272 DLTLFEVEEAAEIIREA 288 (384)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68888999988777654
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.46 E-value=5.7e-14 Score=118.53 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=54.5
Q ss_pred EeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCC----CCCCccceeeeCCCCcccc
Q 015754 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETG----SGQHVPRAVFVDLEPSVID 76 (401)
Q Consensus 2 rEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~----~~~~~PRailvD~e~~~i~ 76 (401)
|||||||+|+.+|+||+||||+ ||..+.++..... .+.+++++|+++. ..+|+||+|++|+..+...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGs 71 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGS 71 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcCc
Confidence 7999999999999999999999 8988865543221 2346899999963 3489999999999998653
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.40 E-value=2.6e-12 Score=126.47 Aligned_cols=148 Identities=16% Similarity=0.252 Sum_probs=128.4
Q ss_pred CCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCccchhh
Q 015754 105 RGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEP 184 (401)
Q Consensus 105 ~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~ 184 (401)
.+....|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ .....+++.++|+.. |.....
T Consensus 72 Ga~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~--EG~~r~ 144 (338)
T COG0206 72 GANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF--EGSPRM 144 (338)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh--cCchHH
Confidence 33478899999999999999988877 57999999999999999999999998 478888999999974 666788
Q ss_pred hHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhcccccccCCCCccchhhhcccccc
Q 015754 185 YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVP 261 (401)
Q Consensus 185 yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~~l~~l~~nLvp 261 (401)
-|+.-++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+--||..|.|+.++.+-+-.
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 899999999999999999999999998764 3222 23688889999999999999889999999999999887765
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.67 E-value=1e-08 Score=85.99 Aligned_cols=92 Identities=26% Similarity=0.436 Sum_probs=76.3
Q ss_pred CccchhhhccccccCCccccccccCccccccccccccccCHHHHHH--HhcCCCCCccccCCCCCceecccccccccCCh
Q 015754 248 INVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITS--AVFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (401)
Q Consensus 248 ~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~f~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (401)
+|.|++++.++|+|+| |+.++++|.... .+..+..+++. .+|++++++..+++.. |+++.. ++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 999999998752 45567778877 8999998887776653 888876 7899
Q ss_pred hhHHHHHHHHhhhcc-ccccccCC-CCce
Q 015754 326 KDVNTAVATIKTKRA-VQFVDWCP-TGFK 352 (401)
Q Consensus 326 ~~i~~~~~~~k~~~~-~~fv~W~p-~~~k 352 (401)
+|+.+++..++.+.. ..|+.|+| .+++
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~ 96 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEE 96 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCc
Confidence 999999999988766 88999999 5554
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.44 E-value=0.0033 Score=63.02 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=46.1
Q ss_pred eeEEEecCCCccCCchHHHHHHhhhhh-----CCcceEEEEEecCCCCCc---cchhhhHHHHHHHHHHhh
Q 015754 135 FLVFSAVGGGTGSGLGSLLLERLSVDY-----GKKSKLGFTIYPSPQVST---AVVEPYNSVLSTHSLLEH 197 (401)
Q Consensus 135 f~~~~sl~GGtGSG~gs~lle~L~dey-----p~~~i~~~~v~P~~~~~~---~~v~~yNt~Lsl~~L~e~ 197 (401)
+.|+.|++||||||+---++-.||+.+ ....+..+.+.|...... ......|+.=+|.+|.-.
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 789999999999999998999999976 344578888899843211 134456777666666543
No 34
>PLN02847 triacylglycerol lipase
Probab=78.60 E-value=6.3 Score=42.26 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=67.3
Q ss_pred ccccccCCCCCCccc-eeeeCCCCcccccccccccc------------cccCCceeeec-ccc-ccCCCCCCccccchhh
Q 015754 50 NTFFSETGSGQHVPR-AVFVDLEPSVIDEVRTGSYR------------QLFHPEQLISG-KED-AANNFARGHYTVGREI 114 (401)
Q Consensus 50 ~~~F~e~~~~~~~PR-ailvD~e~~~i~~i~~~~~~------------~~f~~~~~i~~-~~g-~gnnwa~G~~~~G~~~ 114 (401)
++++.....+.|.|. .|++|-+.+.|=-.-+|... ..|++..+..+ ... ....-.+|++...+.+
T Consensus 154 DVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~~gG~~n~~~G~AH~Gml~AArwI 233 (633)
T PLN02847 154 DVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGVSNLVLGYAHCGMVAAARWI 233 (633)
T ss_pred HEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccccccCcccCcCCccCccHHHHHHHH
Confidence 455555556777776 47888777654222223211 11222211111 000 1112345665556677
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhh--hhCCcceEEEE
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~d--eyp~~~i~~~~ 170 (401)
.+.+...|++.++++...+=+++=||||||+ ++.+.-.|++ +|++...++|+
T Consensus 234 ~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 234 AKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 7888888999999998888888999998876 4444445554 45555544554
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=67.18 E-value=5.6 Score=33.95 Aligned_cols=42 Identities=17% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCccCCc-hHHHHHHhhhh
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGL-GSLLLERLSVD 160 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~-gs~lle~L~de 160 (401)
.+...++|+..+++++. +|.+++.++ ||| =+ ....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 34566889999999999 999999999 765 33 33345555544
No 36
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=64.19 E-value=12 Score=32.33 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEE
Q 015754 105 RGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI 171 (401)
Q Consensus 105 ~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v 171 (401)
+|++.....+...+.+.+++...++..-+=+++=||+||+. +..+...++...+.+.+..++.
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~f 63 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTF 63 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEe
Confidence 46677777788888888888777777777788999998764 4555555665543333333333
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=62.78 E-value=10 Score=31.47 Aligned_cols=32 Identities=16% Similarity=0.429 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEEecCCCc
Q 015754 114 IVDLCLDRVRKLADNCTGLQGFLVFSAVGGGT 145 (401)
Q Consensus 114 ~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGt 145 (401)
-.+++.+++++.+++-+.-+|++++.++.|||
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 34677788888888888899999999999986
No 38
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=62.33 E-value=7.6 Score=33.32 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCccCCchHHHHHHhhhhhCC-cceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchH
Q 015754 143 GGTGSGLGSLLLERLSVDYGK-KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (401)
Q Consensus 143 GGtGSG~gs~lle~L~deyp~-~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~ 207 (401)
+|-|.|+|..+.+.||+++|+ ..+++... |++=+-.-|..-+|----=+|.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~gATGENa 57 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANEGATGENA 57 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCCcccccch
Confidence 456779999999999999998 66666654 5555555555555444333333
No 39
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=62.06 E-value=24 Score=29.57 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCc
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGT 145 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGt 145 (401)
.+++.+++++.+++.+.-+|++++.++-|||
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4567777888888887778999999999986
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=58.15 E-value=33 Score=28.60 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCcc
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTG 146 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG 146 (401)
.+++.+++++.+++.+.=+|++++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 46677888888888777789999999999873
No 41
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=56.59 E-value=11 Score=34.84 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=48.5
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCC
Q 015754 101 NNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS 178 (401)
Q Consensus 101 nnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~ 178 (401)
.-..+|++..-..+.+++.+.++...+++...+=++.=|||||+ +++.+.-.|+..++... +....|-.+..+
T Consensus 97 ~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~-i~~~tFg~P~vg 169 (229)
T cd00519 97 GKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSD-VTVYTFGQPRVG 169 (229)
T ss_pred cEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCc-eEEEEeCCCCCC
Confidence 34567777777777888888888888887777778899999885 45666666666653333 333344444333
No 42
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=52.51 E-value=13 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCCccccch-hhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCC
Q 015754 104 ARGHYTVGR-EIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGK 163 (401)
Q Consensus 104 a~G~~~~G~-~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~ 163 (401)
..|++..-. ...+.+.+.|++..++.....=.+.=||+||+ ++..+.-.+.+..+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 445554444 66778888888888876655556678999775 566666666666544
No 43
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=48.99 E-value=34 Score=34.18 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=57.8
Q ss_pred ccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHH
Q 015754 109 TVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNS 187 (401)
Q Consensus 109 ~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt 187 (401)
....+.+.++.+.|+... +..+||+++|+.+- ---++.+|+.+-+..+|-.+++=+..|.... +|...--+++
T Consensus 62 ~mt~~~w~~la~~I~~~~---~~~dG~VVtHGTDT---meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 62 DMTPEDWQHIADDIKANY---DDYDGFVILHGTDT---MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred cCCHHHHHHHHHHHHHHh---ccCCeEEEeeccch---HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 356778888888888766 46889999997653 2456777777555555555666667887653 3444444444
Q ss_pred HHHHHHHHhhcccchhcchHHHHH
Q 015754 188 VLSTHSLLEHTDVAVLLDNEAIYD 211 (401)
Q Consensus 188 ~Lsl~~L~e~sd~vi~~dN~al~~ 211 (401)
+. +..-.+.....++|+. .++.
T Consensus 136 v~-~A~~~~~~GV~V~f~~-~i~~ 157 (335)
T PRK09461 136 LY-VAANYPINEVTLFFNN-KLFR 157 (335)
T ss_pred HH-HHcCCCCCeEEEEECC-Eeec
Confidence 44 3322223345555544 4443
No 44
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=46.57 E-value=62 Score=29.32 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCccchhhhHHHHHHHH
Q 015754 114 IVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 (401)
Q Consensus 114 ~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~ 193 (401)
+...+.+.|++.+|+ .+.=|. .+.+-|+- -.++-++-.|+.+||... ..+++|+...++.--+ ..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~~fi--~GgalG~D-~waae~vl~LK~~yp~ik--L~~v~Pf~~q~~~W~~--~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVRWFI--TGGALGVD-LWAAEVVLELKKEYPEIK--LALVLPFENQGNNWNE--ANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T--EEE--E---TTHH-HHHHHHHHTTTTT-TT-E--EEEEESSB-TTTTS-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCEEE--ECCcccHH-HHHHHHHHHHHhhhhheE--EEEEEcccchhhcCCH--HHHHHHHH
Confidence 335566667777775 333232 22222221 235556777899998643 4667888653322111 23344567
Q ss_pred HHhhcccchhcchH
Q 015754 194 LLEHTDVAVLLDNE 207 (401)
Q Consensus 194 L~e~sd~vi~~dN~ 207 (401)
|.+.||-++.+..+
T Consensus 98 il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 98 ILEQADFVVVVSER 111 (177)
T ss_dssp HHHH-SEEEESSSS
T ss_pred HHHhCCEEEEccCC
Confidence 77888888877554
No 45
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=46.24 E-value=48 Score=32.74 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=52.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt~ 188 (401)
...+.+.++.+.|++.+++ .+||+++|+..- --.++..++.+-+..+|-.+++=+..|.... +|....-++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTDT---me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTDT---MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--STT---HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCchH---HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4577788888888888854 899999997653 2345566666655555556666677887653 35555555555
Q ss_pred HHHHHHHhhcccchhcchH
Q 015754 189 LSTHSLLEHTDVAVLLDNE 207 (401)
Q Consensus 189 Lsl~~L~e~sd~vi~~dN~ 207 (401)
....+-. ..-..++|+++
T Consensus 128 ~~A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE
T ss_pred HHHhccc-CCceEEEeCCC
Confidence 4444333 55566666555
No 46
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=40.98 E-value=54 Score=32.54 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=55.3
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCC-ccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS-TAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~-~~~v~~yNt~ 188 (401)
...+.+.++.+.|++..++ .+||+++|+..- ---++..|+.+-+. +|-.+++=+..|....+ |...--++ +
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTDT---meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~-A 131 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTDT---MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYN-A 131 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCccc---HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHH-H
Confidence 4577788888888887763 889999997653 23456666655555 56556666777876533 33333333 3
Q ss_pred HHHHHHHh--hcccchhcchH
Q 015754 189 LSTHSLLE--HTDVAVLLDNE 207 (401)
Q Consensus 189 Lsl~~L~e--~sd~vi~~dN~ 207 (401)
+......+ .....++|+++
T Consensus 132 l~~A~~~~~~~~gV~V~f~~~ 152 (323)
T cd00411 132 VYVAANYDSRGRGVLVVFNDR 152 (323)
T ss_pred HHHHcCcccCCCeEEEEECCE
Confidence 33333222 44667777555
No 47
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=38.82 E-value=1.4e+02 Score=22.84 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhc--CCccceeEEEecC----CCccCCchHHHHHHhhhhhCCcceEEEEE
Q 015754 116 DLCLDRVRKLADNC--TGLQGFLVFSAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTI 171 (401)
Q Consensus 116 d~~~d~iR~~~E~c--D~lqgf~~~~sl~----GGtGSG~gs~lle~L~deyp~~~i~~~~v 171 (401)
++..+.++..+++| ...+.+.++|+-| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34555666666665 3568889999999 554 77778888877666666655543
No 48
>PF03283 PAE: Pectinacetylesterase
Probab=37.96 E-value=94 Score=31.43 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=47.7
Q ss_pred ccccchhhHHHHHHHHHHH-hhhcCCccceeEEEecCCCccCCchHHH-HHHhhhhhCC-cceEEEE---EecCCC---C
Q 015754 107 HYTVGREIVDLCLDRVRKL-ADNCTGLQGFLVFSAVGGGTGSGLGSLL-LERLSVDYGK-KSKLGFT---IYPSPQ---V 177 (401)
Q Consensus 107 ~~~~G~~~~d~~~d~iR~~-~E~cD~lqgf~~~~sl~GGtGSG~gs~l-le~L~deyp~-~~i~~~~---v~P~~~---~ 177 (401)
.|-.|....+.+++.|... +.+. +-+++..+-+||.| +.+ ++.+++.+|. +.+..++ .+.... .
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a---~~vlltG~SAGG~g----~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~ 204 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNA---KQVLLTGCSAGGLG----AILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSG 204 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCccc---ceEEEeccChHHHH----HHHHHHHHHHHhccCceEEEeccccccccccCccc
Confidence 4556888888888877666 4443 34577777767654 444 7889999995 3333332 332211 1
Q ss_pred CccchhhhHHHHHHHHHH
Q 015754 178 STAVVEPYNSVLSTHSLL 195 (401)
Q Consensus 178 ~~~~v~~yNt~Lsl~~L~ 195 (401)
.....+.|+.++.++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (361)
T PF03283_consen 205 NPCIRSFYSDVVGLQNWS 222 (361)
T ss_pred chhHHHHHHHHHHHHHhh
Confidence 234445565555555443
No 49
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=37.25 E-value=33 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCC-ccceeEEEecCCCccCCchH-HHHHHhhh
Q 015754 115 VDLCLDRVRKLADNCTG-LQGFLVFSAVGGGTGSGLGS-LLLERLSV 159 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~-lqgf~~~~sl~GGtGSG~gs-~lle~L~d 159 (401)
.+...++|++.+|+++. =+|++++.++ ||+ =+.+ ..++.+++
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 34556788888999866 7899999999 654 2322 35555543
No 50
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=33.36 E-value=88 Score=31.04 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=55.9
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt~ 188 (401)
...+.+.++.+.|+..+.. +..+||+++|+..- ---++..++.+-+..+|-.+++=+..|.... +|...--++++
T Consensus 57 ~t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTDT---meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALAD-DGYDGVVVTHGTDT---LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCCEEEEecCCcc---HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 4566777777777765543 57899999997653 2446666666555555555666667787643 34444444444
Q ss_pred HHHHHHHh--hcccchhcchHHHHH
Q 015754 189 LSTHSLLE--HTDVAVLLDNEAIYD 211 (401)
Q Consensus 189 Lsl~~L~e--~sd~vi~~dN~al~~ 211 (401)
. .....+ ..-..++| |+.++.
T Consensus 133 ~-~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 R-VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred H-HHcCcccCCCEEEEEE-CCEeee
Confidence 3 322222 33455666 444543
No 51
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=32.65 E-value=98 Score=31.86 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=58.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt~ 188 (401)
...+.|.++.+.|++.++ +..+||+++|+..- --.++..|..+-+..+|-.+++=+..|.... +|...--++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTDT---M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTDT---MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCChh---HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 456778888888888876 45699999997653 2456666665544445555566667787543 35555555555
Q ss_pred HHHHHHHhhcccchhcchH
Q 015754 189 LSTHSLLEHTDVAVLLDNE 207 (401)
Q Consensus 189 Lsl~~L~e~sd~vi~~dN~ 207 (401)
..-.. ..+...++|+.+
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 44322 456677778765
No 52
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=31.16 E-value=88 Score=31.26 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=48.2
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt~ 188 (401)
...+.|.++.+.|++..++ .+||+++|+..- --.++..|+.+-+. +|-.+++=+-.|.... +|...--++++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTDT---me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTDT---MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCch---HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4577888888888887763 889999997653 24566667665444 5555666667787543 34444444444
Q ss_pred H
Q 015754 189 L 189 (401)
Q Consensus 189 L 189 (401)
.
T Consensus 132 ~ 132 (336)
T TIGR00519 132 R 132 (336)
T ss_pred H
Confidence 4
No 53
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=31.05 E-value=59 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEecCCCccCCchHHHHHHhhhhhCCc
Q 015754 137 VFSAVGGGTGSGLGSLLLERLSVDYGKK 164 (401)
Q Consensus 137 ~~~sl~GGtGSG~gs~lle~L~deyp~~ 164 (401)
++-+++||.|||=+ -+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGKT-Tva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKT-TVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHH-HHHHHHHHHhCcC
Confidence 56789999999984 4788888888755
No 54
>PRK13660 hypothetical protein; Provisional
Probab=29.74 E-value=1.9e+02 Score=26.32 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCccCC-chHHHHHHhhhhhCCcceEEEEEecCCCCC----ccchhhhHHHH
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSG-LGSLLLERLSVDYGKKSKLGFTIYPSPQVS----TAVVEPYNSVL 189 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG-~gs~lle~L~deyp~~~i~~~~v~P~~~~~----~~~v~~yNt~L 189 (401)
...+.+.|+..+|+ .+.=|.+ ||.-|-- .++-++-.|+.+||...+ ..++|+...+ +.-.+.
T Consensus 28 K~aL~~~l~~~~e~--G~~wfi~----ggalG~d~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e~~q~~----- 94 (182)
T PRK13660 28 KKAIKRKLIALLEE--GLEWVII----SGQLGVELWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNEANQEK----- 94 (182)
T ss_pred HHHHHHHHHHHHHC--CCCEEEE----CCcchHHHHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCHHHHHH-----
Confidence 34555666666663 3443333 2322222 255677789999986544 4567876432 233333
Q ss_pred HHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754 190 STHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240 (401)
Q Consensus 190 sl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (401)
+..+.+.||-+..+...- + -.+.-|..-|+.+...-+.+.+
T Consensus 95 -y~~i~~~aD~v~~vs~~~-y--------~~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 95 -LANILKQADFVKSISKRP-Y--------ESPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred -HHHHHHhCCEEEEecCCC-C--------CChHHHHHHHHHHHHccCeEEE
Confidence 356677888888873321 0 0011266777766665555444
No 55
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=29.42 E-value=75 Score=32.12 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCccchhhhHHHHHH
Q 015754 112 REIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLST 191 (401)
Q Consensus 112 ~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl 191 (401)
.+..+++.+.++.++|.-..--|..+..-.++|.+.|+|.-|+-.+.-++ ..-.+..=.++.|
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l-----------------~~Gi~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL-----------------KSGIEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc-----------------cccHHHHHHHhCH
Confidence 57778888899999888777777777778888888899999988776543 1112333456678
Q ss_pred HHHHhhcccchh----cchHHHHH
Q 015754 192 HSLLEHTDVAVL----LDNEAIYD 211 (401)
Q Consensus 192 ~~L~e~sd~vi~----~dN~al~~ 211 (401)
....+-+|+||. +|++++.-
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~G 302 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLHG 302 (378)
T ss_pred HHhhccCCEEEeCCCcccccccCC
Confidence 888999999996 67777643
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=28.50 E-value=79 Score=30.58 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCCCCCccccchhhHHHHHHH-HHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEE
Q 015754 101 NNFARGHYTVGREIVDLCLDR-VRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI 171 (401)
Q Consensus 101 nnwa~G~~~~G~~~~d~~~d~-iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v 171 (401)
-.|+-|||..+.+-+++.+.+ +...+|+++-=.| .=+-++|.|+| | ++..+.+.| +..+..+.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~----~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-G----LAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-H----HHHHHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-H----HHHHHHHHc-CcEEEEEEC
Confidence 456777888777766665544 7777888764444 56678888887 4 344455667 444444443
No 57
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.01 E-value=1.4e+02 Score=29.68 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEEecCCCcc
Q 015754 115 VDLCLDRVRKLADNCTGLQGFLVFSAVGGGTG 146 (401)
Q Consensus 115 ~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG 146 (401)
.+++.+++++.+++.+.-+|++++.++-|||=
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 46677788888888777789999999999873
No 58
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=27.16 E-value=65 Score=32.36 Aligned_cols=41 Identities=34% Similarity=0.590 Sum_probs=29.1
Q ss_pred HHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEE
Q 015754 124 KLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 169 (401)
Q Consensus 124 ~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~ 169 (401)
|.++.+..+.|+-...++|||+| . ++.+|--.||+.-.+.+
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~-v~k~ll~~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----R-VLKNLLSKYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----H-HHHHHHHhCCCCceeec
Confidence 44677778888999999999876 3 44444338988655544
No 59
>PLN02408 phospholipase A1
Probab=24.70 E-value=1.5e+02 Score=30.10 Aligned_cols=63 Identities=10% Similarity=0.231 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHhhhcCCc--cceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCCCc
Q 015754 113 EIVDLCLDRVRKLADNCTGL--QGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179 (401)
Q Consensus 113 ~~~d~~~d~iR~~~E~cD~l--qgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~~~ 179 (401)
.+.+++.+.|++.+++...- .=.+.=||+||+ ++...+-.|+..++..+.+....|-.+..++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCccc
Confidence 46678888888888876532 235667888764 5666777778777766655556666665553
No 60
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.09 E-value=1.6e+02 Score=30.48 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=57.9
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEEecCCCC-CccchhhhHHH
Q 015754 110 VGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV-STAVVEPYNSV 188 (401)
Q Consensus 110 ~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v~P~~~~-~~~~v~~yNt~ 188 (401)
...+.|.++.+.|++.+++ ..+||+++|+..- --.++..|..+- ..++-.+++=+-.|.... +|...--++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTDT---M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTDT---MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCch---HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 5677888899999888874 5899999997653 244566665544 445555566667787543 35555555555
Q ss_pred HHHHHHHhhcccchhcchH
Q 015754 189 LSTHSLLEHTDVAVLLDNE 207 (401)
Q Consensus 189 Lsl~~L~e~sd~vi~~dN~ 207 (401)
.... ...+...++|+.+
T Consensus 207 ~~A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT--SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh--CCCCcEEEEECCc
Confidence 4333 3456677777665
No 61
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=24.02 E-value=37 Score=16.49 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=6.2
Q ss_pred cccccCCcc
Q 015754 257 TNLVPYPRI 265 (401)
Q Consensus 257 ~nLvp~p~l 265 (401)
.-|+||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 357888873
No 62
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=23.62 E-value=99 Score=23.00 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=19.0
Q ss_pred cCCchHHHHHHhhhhhCCcceEE
Q 015754 146 GSGLGSLLLERLSVDYGKKSKLG 168 (401)
Q Consensus 146 GSG~gs~lle~L~deyp~~~i~~ 168 (401)
|-|+|+.|++.+.++++++.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 35899999999999998776643
No 63
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=88 Score=30.40 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcceEEEEE--ecCCCCCccchhhhHHHHHHHH
Q 015754 116 DLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI--YPSPQVSTAVVEPYNSVLSTHS 193 (401)
Q Consensus 116 d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~i~~~~v--~P~~~~~~~~v~~yNt~Lsl~~ 193 (401)
+.+...+|.+++.||++ ||-|...|+|......+-.+-..-.| ++....++.+-=..|-+|.---
T Consensus 5 ~~~r~~l~~Qak~C~s~-------------GSpf~a~lle~Va~~l~~s~~v~~~Il~wrG~p~g~aV~lRl~GaLHalv 71 (350)
T COG4427 5 EHVRNALRSQAKVCDSL-------------GSPFTARLLELVAARLDLSGGVGESILGWRGAPEGDAVPLRLAGALHALV 71 (350)
T ss_pred HHHHHHHHHHhhhhccc-------------CCHHHHHHHHHHHhhcccccchhhhhcccCCCCcccchhhhhhhhHHHHH
Confidence 34667899999999987 89999999999988886443332222 4443334444434444443333
Q ss_pred HHhhcccc---hh---cchHHHHHhhhcc
Q 015754 194 LLEHTDVA---VL---LDNEAIYDICRRS 216 (401)
Q Consensus 194 L~e~sd~v---i~---~dN~al~~~~~~~ 216 (401)
+.+.+-.. +| -|-++++..|.+.
T Consensus 72 l~gr~~~L~a~~p~~~~d~ea~w~aia~a 100 (350)
T COG4427 72 LDGRAPVLRADYPPTGWDAEALWPAIARA 100 (350)
T ss_pred HcCCCccccccCCCCCchhhHHHHHHHHH
Confidence 33332211 11 1456666665443
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.58 E-value=2.8e+02 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=28.9
Q ss_pred hhhhhCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcch
Q 015754 157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206 (401)
Q Consensus 157 L~deyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN 206 (401)
..+.|.+..+.+..++++...-....+..|+.-++..|.+. .++|+=|
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIin 134 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIIN 134 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEEC
Confidence 45555555666666666553223344455888888888886 4455533
No 65
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=22.13 E-value=2.9e+02 Score=24.08 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCc
Q 015754 113 EIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKK 164 (401)
Q Consensus 113 ~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~ 164 (401)
+..+...+.+...++.-|+=+|++++.++-|||= ..++-++-.+.|..
T Consensus 40 ~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP----~N~A~~l~~~~~~~ 87 (143)
T COG2893 40 DSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSP----FNVASRLAMEGPRV 87 (143)
T ss_pred ChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCH----hHHHHHHHhhCCCc
Confidence 3444555666666666677789999999999874 44455555555554
No 66
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=21.54 E-value=2.3e+02 Score=20.84 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=23.8
Q ss_pred ceeEEEecCCCccCCchHH--HHHHhhhhhCCcceEEE
Q 015754 134 GFLVFSAVGGGTGSGLGSL--LLERLSVDYGKKSKLGF 169 (401)
Q Consensus 134 gf~~~~sl~GGtGSG~gs~--lle~L~deyp~~~i~~~ 169 (401)
.++++.++.|..|-.+... |.+.++..|++++++..
T Consensus 16 ~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 16 AILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp EEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred eEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3577889988765544444 78999999999988654
No 67
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=21.51 E-value=3.4e+02 Score=24.14 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=55.3
Q ss_pred chhhHHHHHHHHHHHhhhcCCccceeEEEecCCCcc---CCchHHHHHHhhhhhCC-cceEEEEEecCCCCCccchhhhH
Q 015754 111 GREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTG---SGLGSLLLERLSVDYGK-KSKLGFTIYPSPQVSTAVVEPYN 186 (401)
Q Consensus 111 G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG---SG~gs~lle~L~deyp~-~~i~~~~v~P~~~~~~~~v~~yN 186 (401)
.++..+.+.+.+-+.+++ -.++|+-+----.+..+ .---..+++.||+.+++ ..+++.++-|...... .
T Consensus 85 ~~~~~~~f~~~~~~~v~~-~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~----~-- 157 (210)
T cd00598 85 DPASRAAFANSLVSFLKT-YGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLG----Y-- 157 (210)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhh----c--
Confidence 344556666777777766 46999988655544432 11234478889999987 4566666654432110 0
Q ss_pred HHHHHHHHHhhcccchhcchH
Q 015754 187 SVLSTHSLLEHTDVAVLLDNE 207 (401)
Q Consensus 187 t~Lsl~~L~e~sd~vi~~dN~ 207 (401)
..-+..+.+++|.+.++.-+
T Consensus 158 -~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 158 -AYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred -cCCHHHHHhhCCEEEEeeec
Confidence 22367888899999888555
No 68
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=20.90 E-value=3e+02 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=39.2
Q ss_pred chhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhhhCCcc
Q 015754 111 GREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKS 165 (401)
Q Consensus 111 G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~deyp~~~ 165 (401)
++.+.|...++|+...+.-+ .++.|++||--||+.=.|+-.+.+++.+..
T Consensus 9 ~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~ 58 (407)
T COG3969 9 DENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGRDK 58 (407)
T ss_pred cchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCCCc
Confidence 56678889999999988766 568999999999998777766666665533
No 69
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=20.30 E-value=57 Score=31.59 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHH
Q 015754 117 LCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLER 156 (401)
Q Consensus 117 ~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~ 156 (401)
++++++|+.+++=.-+ +|+|.|+|+.++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788899988875544 5677888998887764
Done!