BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015755
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 42 PLICLPGTAGTA-EVYYKQIMALSMKGYRVISVDI---------PRVWNHHEWIQAFEKF 91
PL+ L + GT + Q+ AL+ + +RV+ D P + + +
Sbjct: 28 PLLALSNSIGTTLHXWDAQLPALT-RHFRVLRYDARGHGASSVPPGPYTLARLGEDVLEL 86
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
LDA++V H G SLGG + Q A H P+R+ LVL+NT
Sbjct: 87 LDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANT 126
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 47 PGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAI 95
PG G A + + I L GYRVI +D P W + + + + +D +
Sbjct: 47 PGATGWAN-FSRNIDPLVEAGYRVILLDCPG-WGKSDSVVNSGSRSDLNARILKSVVDQL 104
Query: 96 DVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDTHSFAAAMP 143
D+ IHL G S+GG + F P RV LVL S MP
Sbjct: 105 DIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMP 152
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 52 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 110
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
S+GG A FA P R+ L+L
Sbjct: 111 NSMGGATALNFALEYPDRIGKLIL 134
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 52 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 110
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
S+GG A FA P R+ L+L
Sbjct: 111 NSMGGATALNFALEYPDRIGKLIL 134
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 22/190 (11%)
Query: 32 YYDFGPKVVP--PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWN-----HHEW 84
Y D PK ++ G A + + I L+ GYRVI+VD H+++
Sbjct: 36 YLDVAPKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQY 95
Query: 85 IQAFEKF-------LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDTHS 137
+F++ L+ + V + G S GG LA +A PR+V LVL N
Sbjct: 96 --SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGLEDW 153
Query: 138 FAAAMPWAPIVSW------TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSRED 191
A +PW + W T + +++Y + G P V RE
Sbjct: 154 KALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQXQAGXYRGKGRES 213
Query: 192 LASRLTLTAD 201
+A LT D
Sbjct: 214 VAWNSALTYD 223
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 52 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 110
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
++GG A FA P R+ L+L
Sbjct: 111 NAMGGATALNFALEYPDRIGKLIL 134
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 52 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 110
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
++GG A FA P R+ L+L
Sbjct: 111 NAMGGATALNFALEYPDRIGKLIL 134
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 52 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 110
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
++GG A FA P R+ L+L
Sbjct: 111 NAMGGATALNFALEYPDRIGKLIL 134
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 YYKQIMALSMKGYRVISVDIPRVWNHHEWI-----------QAFEKFLDAIDVHHIHLYG 104
YY+ + GYRVI D P +N + + +A + +DA+D+ HL G
Sbjct: 49 YYRNVGPFVDAGYRVILKDSPG-FNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVG 107
Query: 105 TSLGGFLAQLFAQHRPRRVRSLVL 128
++GG A FA P R+ L+L
Sbjct: 108 NAMGGATALNFALEYPDRIGKLIL 131
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 11 FVHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKG 67
+V K +V LH + +G+ P +CL G E +Y QI AL+ G
Sbjct: 241 YVTVKPRVRLHFVELGSG-------------PAVCL--CHGFPESWYSWRYQIPALAQAG 285
Query: 68 YRVISVDI---------PRVWNHHEWIQAFE--KFLDAIDVHHIHLYGTSLGGFLAQLFA 116
YRV+++D+ P + + + E FLD + + G GG L A
Sbjct: 286 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 345
Query: 117 QHRPRRVRSLVLSNT 131
P RVR++ NT
Sbjct: 346 LFYPERVRAVASLNT 360
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 36 GPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHH----------EWI 85
GP+ PPL+ L G ++ +Y I S K YR +VDI N ++
Sbjct: 63 GPEDAPPLVLLHGALFSSTXWYPNIADWSSK-YRTYAVDIIGDKNKSIPENVSGTRTDYA 121
Query: 86 QAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVL---SNTFLDTH 136
D + + H G SLGG F P RV+S + + TFL H
Sbjct: 122 NWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFLPFH 175
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 32 YYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKGYRVISVDI--------PRVWN 80
Y+D G P+I + G+ Y I ALS K YRVI+ D+ P +N
Sbjct: 19 YHDVGEG--QPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPENYN 75
Query: 81 HHE--WIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVL 128
+ + W+ +DA+++ H+ G S GG LA A RV +VL
Sbjct: 76 YSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVL 125
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 30 WRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIP----------RVW 79
+++Y+ + L+ L G + Y+ I + Y VI++D+P W
Sbjct: 6 YKFYEANVETNQVLVFLHGFLSDSRTYHNHIEKFT-DNYHVITIDLPGHGEDQSSMDETW 64
Query: 80 NHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
N ++ LD I L+G S+GG +A +A + + +L+L +T
Sbjct: 65 NFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILEST 116
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 11 FVHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKG 67
+V K +V LH + +G+ P +CL G E +Y QI AL+ G
Sbjct: 22 YVTVKPRVRLHFVELGSG-------------PAVCL--CHGFPESWYSWRYQIPALAQAG 66
Query: 68 YRVISVDI---------PRVWNHHEWIQAFE--KFLDAIDVHHIHLYGTSLGGFLAQLFA 116
YRV+++D+ P + + + E FLD + + G GG L A
Sbjct: 67 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 126
Query: 117 QHRPRRVRSLVLSNT 131
P RVR++ NT
Sbjct: 127 LFYPERVRAVASLNT 141
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 11 FVHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKG 67
+V K +V LH + +G+ P +CL G E +Y QI AL+ G
Sbjct: 37 YVTVKPRVRLHFVELGSG-------------PAVCL--CHGFPESWYSWRYQIPALAQAG 81
Query: 68 YRVISVDI---------PRVWNHHEWIQAFE--KFLDAIDVHHIHLYGTSLGGFLAQLFA 116
YRV+++D+ P + + + E FLD + + G GG L A
Sbjct: 82 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 141
Query: 117 QHRPRRVRSLVLSNT 131
P RVR++ NT
Sbjct: 142 LFYPERVRAVASLNT 156
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 32 YYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKGYRVISVDI--------PRVWN 80
Y+D G P+I + G+ Y I ALS K YRVI+ D+ P +N
Sbjct: 19 YHDVGEG--QPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPENYN 75
Query: 81 HHE--WIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVL 128
+ + W+ +DA+++ H+ G + GG LA A RV +VL
Sbjct: 76 YSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVL 125
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 26 GTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDI--PRVWNHHE 83
G Q +G P ++C+ G + + + L+ +GYRV++ D+ +H E
Sbjct: 12 GGNQICLCSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE 71
Query: 84 WIQAFEK--FLDAIDV-------HHIHLYGTSLGGFLAQLFAQHRPRRVRSLVL 128
+ ++ FL ID + L G S+G LA A RP++++ L+L
Sbjct: 72 MVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELIL 125
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 32 YYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDI-----------PRVW 79
Y D GP+ +CL G + +Y K + + G RV++ D+ V+
Sbjct: 37 YVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVY 96
Query: 80 NHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFL 133
++ FLDA+ + + L GG L RP+ V L++ NT L
Sbjct: 97 TFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMT 153
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMT 153
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMT 153
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMT 153
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMT 153
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 42 PLICLPGTAGTAEVYY-KQIMALSMKGYRVISVDIPRV--------WNHHEWIQAFEKFL 92
P++ + G G ++ Q+ A GYR I+ D + + + +
Sbjct: 45 PVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFTTQTMVADTAALI 104
Query: 93 DAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
+ +D+ + G S+G F+AQ P V S VL T
Sbjct: 105 ETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 43 LICLPGTAGTAEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEK-----F 91
+CL G + +Y K I + G RVI+ D + + ++ F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 92 LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDT 135
++ +D+ +I L GGFL P R + L++ N L T
Sbjct: 110 IERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMT 153
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 53 AEVYYKQIMALSMKGYRVISVD--------IPRVWNHHE-WIQAFEKFLDAIDVHHIHLY 103
A+++ Q+ LS +GYR I+ D P N ++ + + ++ +D+ + L
Sbjct: 32 ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
Query: 104 GTSLGGF-LAQLFAQHRPRRVRSLVL 128
G S+GG +A+ A+H RV LVL
Sbjct: 92 GFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 53 AEVYYKQIMALSMKGYRVISVD--------IPRVWNHHE-WIQAFEKFLDAIDVHHIHLY 103
A+++ Q+ LS +GYR I+ D P N ++ + + ++ +D+ + L
Sbjct: 32 ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
Query: 104 GTSLGGF-LAQLFAQHRPRRVRSLVL 128
G S+GG +A+ A+H RV LVL
Sbjct: 92 GFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 53 AEVYYKQIMALSMKGYRVISVD--------IPRVWNHHE-WIQAFEKFLDAIDVHHIHLY 103
A+++ Q+ LS +GYR I+ D P N ++ + + ++ +D+ + L
Sbjct: 32 ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
Query: 104 GTSLGGF-LAQLFAQHRPRRVRSLVL 128
G S+GG +A+ A+H RV LVL
Sbjct: 92 GFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 42 PLICLPGTAGTAEVYYKQIMALSMKGYRVISVD--------IPRVWNHHE-WIQAFEKFL 92
P++ G A+++ Q+ LS +GYR I+ D P N ++ + + +
Sbjct: 21 PVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLI 80
Query: 93 DAIDVHHIHLYGTSLGGF-LAQLFAQHRPRRVRSLVL 128
+ +D+ + L G S+GG +A+ A+H RV LVL
Sbjct: 81 EHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 53 AEVYYKQIMALSMKGYRVISVD--------IPRVWNHHE-WIQAFEKFLDAIDVHHIHLY 103
A+++ Q+ LS +GYR I+ D P N ++ + + ++ +D+ + L
Sbjct: 32 ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
Query: 104 GTSLGGF-LAQLFAQHRPRRVRSLVL 128
G S+GG +A+ A+H RV LVL
Sbjct: 92 GFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 22 KIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAE---VYYKQIMALSM----------KGY 68
+IP+G + P P ++ + G G+ V ++ + L +GY
Sbjct: 10 EIPVGQDELSGTLLTPTGXPGVLFVHGWGGSQHHSLVRAREAVGLGCICXTFDLRGHEGY 69
Query: 69 RVISVDIPRVWNHHEWIQAFEKF--LDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ R N + A+++ L +D H I + G S GG+L+ L + RP +L
Sbjct: 70 ASXRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWLAL 129
Query: 127 VLSNTFLDTH 136
+ D H
Sbjct: 130 RSPALYKDAH 139
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 42 PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIP------------RVWNHHEWIQAFE 89
PL+ + G + + ++ Q+ K +RVI+ D+P R ++ + A
Sbjct: 26 PLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 90 KFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
+ + + + ++G SLGG + P +R L+++ T
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIGIEMIARYP-EMRGLMITGT 126
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 29/135 (21%)
Query: 11 FVHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKG 67
+V K + LH + +G+ P +CL G E ++ QI AL+ G
Sbjct: 239 YVTVKPGIRLHFVEMGSG-------------PALCL--CHGFPESWFSWRYQIPALAQAG 283
Query: 68 YRVISVDI---------PRVWNHHEWIQAFE--KFLDAIDVHHIHLYGTSLGGFLAQLFA 116
+RV+++D+ P + + + E FLD + + G G + A
Sbjct: 284 FRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMA 343
Query: 117 QHRPRRVRSLVLSNT 131
P RVR++ NT
Sbjct: 344 LFYPERVRAVASLNT 358
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 42 PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIP------------RVWNHHEWIQAFE 89
PL+ + G + + ++ Q+ K +RVI+ D+P R ++ + A
Sbjct: 26 PLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 90 KFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
+ + + + ++G SLGG + P +R L+++ T
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIGIEMIARYP-EMRGLMITGT 126
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 32 YYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVIS--------VDIPRVWNHHE 83
Y D+GP+ P++ G +A+ + Q++ GYRVI+ D P + +
Sbjct: 13 YKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMD 72
Query: 84 WIQA-FEKFLDAIDVH-HIHLYGTSLGGFLAQLFAQHRPRRVRSLVL 128
A +A+D+ +H+ ++ GG +A+ A+ P RV VL
Sbjct: 73 TYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVL 119
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 42 PLICLPGTAGTAEVYYKQIMALSMKGYRVISVD---------IPRVWNHHEWIQAFEKFL 92
P++ + G + +Q L +GYRVI+ D + +++ + L
Sbjct: 25 PVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTVL 84
Query: 93 DAIDVHHIHLYGTSLG-GFLAQLFAQHRPRRVRSLVL 128
+ +D+ + L G S+G G LA+ A++ RV L
Sbjct: 85 ETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAF 121
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 32 YYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVD------IPRVWNHHEWI 85
Y D+GP+ P + G +A+ + Q++ GYRV++ D +VW+ H+ +
Sbjct: 14 YKDWGPRDAPVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDGHD-M 72
Query: 86 QAFEKFLDAIDVH-----HIHLYGTSLGGFLAQLFAQHRPRRVRSLVL 128
+ + A+ H +H+ ++ GG + + A+H +V VL
Sbjct: 73 DHYADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVL 120
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 42 PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIP------------RVWNHHEWIQAFE 89
PL+ + G + + ++ Q+ K +RVI+ D+P R ++ + A
Sbjct: 26 PLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 90 KFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNT 131
+ + + + ++G LGG + P +R L+++ T
Sbjct: 86 EVMQQLGIADAVVFGWGLGGHIGIEMIARYP-EMRGLMITGT 126
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 53 AEVYYKQIMALSM---KGYRVISVDIPRVWNHHEWIQAFEKFLDAID--VHHIHLYGTSL 107
AE Y K + + KG+ D+ R H+W+ + E+ + I + G S+
Sbjct: 60 AEAYAKAGYTVCLPRLKGHGTHYEDMERT-TFHDWVASVEEGYGWLKQRCQTIFVTGLSM 118
Query: 108 GGFLAQLFAQHRPRRVRSLVLSNTFLDTHSFAAAM 142
GG L A+H P + +V N +D + AA M
Sbjct: 119 GGTLTLYLAEHHP-DICGIVPINAAVDIPAIAAGM 152
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 85 IQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFL 133
+ E+ + V ++G S G LA +AQ P++V LVL FL
Sbjct: 89 VADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 53 AEVYYKQIMALSMKGYRVISVDI------PRVWNHHEWIQAFEKFLDAI-----DVHHIH 101
A ++YK L G+RV +V++ PR E + + K L + +
Sbjct: 17 AWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETLKSLPENEEVI 76
Query: 102 LYGTSLGGFLAQLFAQHRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSWTPSFLLKRYV 160
L G S GG L A P +++ LV N FL P + PS +L +Y+
Sbjct: 77 LVGFSFGGINIALAADIFPAKIKVLVFLNAFL------------PDTTHVPSHVLDKYM 123
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 85 IQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLVLSNTF 132
+ E+ + V ++G S G LA +AQ P RV +VL F
Sbjct: 92 VADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 29 QWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVD------IPRVWNHH 82
Q Y D+G P++ G A+ + Q++ L+ +GYRVI+ D + W+ +
Sbjct: 10 QIYYKDWGSG--QPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGN 67
Query: 83 E---WIQAFEKFLDAIDVHHIHLYGTSLGGF-LAQLFAQHRPRRV 123
+ + + ++ +D+ L+G S GG +A+ +H RV
Sbjct: 68 DMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARV 112
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 259 DEVNLHLQLHLRRVGVEARPDLVRGISRDGSGGDPSESNDRKEDSDN 305
+E+ L+ H RR G E RP +V+G+ RD G E+ + E ++
Sbjct: 56 EELLRRLEAHARRYGAEVRPGVVKGV-RDXGGVFEVETEEGVEKAER 101
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 26 GTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKGYRVISVD-------- 74
GT+ D P PL+ L G E +Y QI AL+ GYRV+++D
Sbjct: 18 GTRIHAVADSPPDQQGPLVVL--LHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSS 75
Query: 75 ---IPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLV 127
+ + + E + LD+ + G G +A FA P R +V
Sbjct: 76 KYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 26 GTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYK---QIMALSMKGYRVISVD-------- 74
GT+ D P PL+ L G E +Y QI AL+ GYRV+++D
Sbjct: 12 GTRIHAVADSPPDQQGPLVVL--LHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSS 69
Query: 75 ---IPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLV 127
+ + + E + LD+ + G G +A FA P R +V
Sbjct: 70 KYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 57 YKQIMALSMKGYRVISVDIP------RVWNHHEW----IQAFEKFLDAIDVHHIHLYGTS 106
+ + +A+ + + V++VD P + H ++ A + D + + + L G S
Sbjct: 75 FSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNS 134
Query: 107 LGGFLAQLFAQHRPRRVRSLVL 128
LGG A FA P R LVL
Sbjct: 135 LGGGTAVRFALDYPARAGRLVL 156
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 10 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 68
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 69 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 123
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 21 HKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRV-- 78
H + + ++ Y D GP+ P++ L G T+ ++ I+ +R I+ D+ +
Sbjct: 13 HYVEVLGERMHYVDVGPRDGTPVLFLHGNP-TSSYLWRNIIPHVAPSHRCIAPDLIGMGK 71
Query: 79 -------WNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSL 126
+ + ++ + F++A+ + + L G L +A+ P RV+ +
Sbjct: 72 SDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,332,827
Number of Sequences: 62578
Number of extensions: 504234
Number of successful extensions: 1092
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 63
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)