Query 015756
Match_columns 401
No_of_seqs 189 out of 456
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rpq_W Peptide E131; receptor- 23.3 15 0.00052 22.5 -0.2 16 280-295 3-18 (26)
2 1qmy_A Protease, leader protea 8.4 1.2E+02 0.004 26.8 1.1 22 365-386 23-44 (167)
3 1jxc_A Putative trypsin inhibi 7.8 73 0.0025 24.2 -0.3 10 278-287 27-36 (68)
4 3ouf_A Potassium channel prote 5.7 5.1E+02 0.017 20.0 3.6 29 269-297 31-61 (97)
5 2lx0_A Membrane fusion protein 5.1 7E+02 0.024 15.8 3.7 27 157-183 5-31 (32)
6 2rre_A NVL2, putative uncharac 4.4 4.3E+02 0.015 20.6 2.3 23 285-307 47-69 (78)
7 2jxf_A NS4B(40-69), genome pol 4.0 2E+02 0.007 18.5 0.1 10 391-400 7-18 (30)
8 3s8f_C Cytochrome C oxidase po 3.6 1E+03 0.034 15.6 3.5 21 343-363 11-31 (34)
9 1m5a_B Insulin B chain; alpha 3.6 2.3E+02 0.008 18.3 0.1 6 377-382 20-25 (30)
10 2jgb_A Eukaryotic translation 3.4 3.2E+02 0.011 24.4 0.8 13 389-401 50-62 (195)
No 1
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=23.28 E-value=15 Score=22.54 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=12.7
Q ss_pred cceecccccccCCCcc
Q 015756 280 APTLCYQTSYPRTASV 295 (401)
Q Consensus 280 aPTL~Yq~~YPRT~~I 295 (401)
+|-+||++.|---+.+
T Consensus 3 cphfcyeldyelcpdv 18 (26)
T 1rpq_W 3 CPHFCYELDYELCPDV 18 (26)
T ss_dssp CCTHHHHSSSCCSCGG
T ss_pred CCeeeeecCcccCCce
Confidence 7889999999766644
No 2
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=8.40 E-value=1.2e+02 Score=26.78 Aligned_cols=22 Identities=27% Similarity=0.717 Sum_probs=18.9
Q ss_pred HHHHHHHhhhccCCcccchhhh
Q 015756 365 LWLNILAELLRFGDREFYKDWW 386 (401)
Q Consensus 365 ~~LN~~AEl~rF~DR~FY~DWW 386 (401)
||||.+-.|.|+-|--|++-=.
T Consensus 23 cWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 23 AWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHH
T ss_pred hHHHHHHHHHHHcCccchhhcc
Confidence 9999999999999998886433
No 3
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=7.85 E-value=73 Score=24.17 Aligned_cols=10 Identities=40% Similarity=1.035 Sum_probs=7.9
Q ss_pred hccceecccc
Q 015756 278 MVAPTLCYQT 287 (401)
Q Consensus 278 l~aPTL~Yq~ 287 (401)
-++||+|||-
T Consensus 27 rifPt~Cy~~ 36 (68)
T 1jxc_A 27 RIFPTICYTR 36 (68)
T ss_dssp TCCCCHHHHH
T ss_pred hhhhHHHHHH
Confidence 3689999973
No 4
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=5.65 E-value=5.1e+02 Score=20.01 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred Cchhhhhhhh--ccceecccccccCCCcccH
Q 015756 269 VSFKSLVYFM--VAPTLCYQTSYPRTASVRK 297 (401)
Q Consensus 269 ~t~~n~~yFl--~aPTL~Yq~~YPRT~~IRw 297 (401)
.++-+-+||. -..|.=|.+-+|+|+.=|.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~ 61 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHH
Confidence 3566777775 5678889999999875443
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=5.05 E-value=7e+02 Score=15.82 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=16.5
Q ss_pred chhhHHHHHhhhHHHHHHHHHHHHHhh
Q 015756 157 DWPLLMCCLTLPLFPLSAFLVEKLAQR 183 (401)
Q Consensus 157 ~w~~~m~~l~l~v~~~~a~~iEk~~~~ 183 (401)
.|..+.....+..|..+.||+-|.+++
T Consensus 5 iweviaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466544444555666777887776654
No 6
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=4.42 E-value=4.3e+02 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=14.1
Q ss_pred ccccccCCCcccHHHHHHHHHHH
Q 015756 285 YQTSYPRTASVRKGWVVRQFVKL 307 (401)
Q Consensus 285 Yq~~YPRT~~IRw~~vl~~~~e~ 307 (401)
|..+|+|.++.-.+...+++++.
T Consensus 47 Y~~eY~Rrk~~~Fr~~Veka~~~ 69 (78)
T 2rre_A 47 YSVDYGRRKRNAFRIQVEKVFSI 69 (78)
T ss_dssp TTTTTCSSCHHHHHHHHHHHHHH
T ss_pred hhhhccccccccHHHHHHHHHHH
Confidence 55678887765545555555544
No 7
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=4.00 E-value=2e+02 Score=18.45 Aligned_cols=10 Identities=40% Similarity=1.345 Sum_probs=6.3
Q ss_pred HHHHHHH--hcC
Q 015756 391 VEEYWRM--WNM 400 (401)
Q Consensus 391 ~~~ywR~--WN~ 400 (401)
.++||.| ||.
T Consensus 7 le~fW~khMwNf 18 (30)
T 2jxf_A 7 LEVFWAKHMWNF 18 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 5677764 664
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=3.65 E-value=1e+03 Score=15.65 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 015756 343 RVLKLSVPNLYVWLCMFYCFF 363 (401)
Q Consensus 343 ~~lkL~iP~~~~~Ll~FY~if 363 (401)
.++-+..-.++.|+.+|+++.
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHeeee
Confidence 445566677788888886554
No 9
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=3.59 E-value=2.3e+02 Score=18.32 Aligned_cols=6 Identities=50% Similarity=1.403 Sum_probs=0.0
Q ss_pred CCcccc
Q 015756 377 GDREFY 382 (401)
Q Consensus 377 ~DR~FY 382 (401)
|||.||
T Consensus 20 gdRGF~ 25 (30)
T 1m5a_B 20 GERGFF 25 (30)
T ss_dssp GGGCEE
T ss_pred ccCccc
No 10
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=3.40 E-value=3.2e+02 Score=24.36 Aligned_cols=13 Identities=31% Similarity=1.043 Sum_probs=0.0
Q ss_pred CCHHHHHHHhcCC
Q 015756 389 KTVEEYWRMWNMV 401 (401)
Q Consensus 389 ~s~~~ywR~WN~V 401 (401)
.|+++||+.||-+
T Consensus 50 ~TVE~FW~~yn~i 62 (195)
T 2jgb_A 50 ASVEQFWRFYSHM 62 (195)
T ss_dssp EEHHHHHHHHTTS
T ss_pred ecHHHHHHHHhcC
Done!