Your job contains 1 sequence.
>015757
MSSDEIALNGLNTQLVFQDDPLRSFNCQQHRVGDPGPKTRELTGFIDDKMFSVDRDRYFR
PQPTMFTEHHPERRDPPQAREWSGNATSPSTDESDGEDDDVDDDEDDDDVDEAEKNNNHN
SNSNVTNCNNNNNSTNCGILTAGVEKMGNGKAKNQLNFGKIGNAGQNVNNGAIVTVAEAD
SDVYYSQYLQQGTEGSSGSGQKECVAVDNGCGISGSGDSLRAILSDPVTGNLMDDAMILP
CGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQFYRTCKRKR
EKFDQDKGSYGDSTVMDPPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNG
WYVVKTLDNAESVKLQYRSLAKVSDDSSSKPTSSKMAPNWL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015757
(401 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2153484 - symbol:AT5G05230 species:3702 "Arabi... 678 3.7e-72 2
TAIR|locus:2061823 - symbol:AT2G40640 "AT2G40640" species... 568 1.8e-58 2
TAIR|locus:504955744 - symbol:AT3G19895 "AT3G19895" speci... 406 4.6e-40 2
>TAIR|locus:2153484 [details] [associations]
symbol:AT5G05230 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 UniPathway:UPA00143
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB010692
EMBL:BT014987 EMBL:BT015849 EMBL:AK228492 IPI:IPI00532672
RefSeq:NP_196142.3 UniGene:At.33017 ProteinModelPortal:Q6DBN5
SMR:Q6DBN5 PRIDE:Q6DBN5 EnsemblPlants:AT5G05230.1 GeneID:830405
KEGG:ath:AT5G05230 TAIR:At5g05230 eggNOG:NOG249202
HOGENOM:HOG000115796 InParanoid:Q6DBN5 OMA:MADAMIL PhylomeDB:Q6DBN5
ProtClustDB:CLSN2681029 Genevestigator:Q6DBN5 Uniprot:Q6DBN5
Length = 363
Score = 678 (243.7 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 145/259 (55%), Positives = 171/259 (66%)
Query: 157 NFGKIG---NAGQN-VNNGAIVTVAEADSDVYYSQYLQQGTEXXXXXXQKECVAVDNGCG 212
N G IG +AG++ V+ GA++ V + D+ YYSQ+ + ++ +A DNGC
Sbjct: 106 NEGDIGMNKDAGEDSVSAGAVIVVGQ-DNAAYYSQHFKTVEASFVSRNEESSIAADNGCD 164
Query: 213 ISGSGD----------SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTC 262
SG D SLR ILSDP TG+LM DAMILPCGH+FGA G++ V +MKAC TC
Sbjct: 165 FSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTC 224
Query: 263 SRPVLEDSIAPNLSLRAAVQAFRREEELQFYRTCKRKREKFDQDKGSYGDSTVMDPPRGR 322
S+PV EDSI PNL+LR AVQAF REE Q KRKRE FDQ++ ++G + R +
Sbjct: 225 SQPVSEDSITPNLTLRVAVQAFCREENSQSNHPSKRKREGFDQERRAFGVTNHSGRSRNK 284
Query: 323 GVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 382
FPFAV DRVIIKGNKRTP RFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK
Sbjct: 285 SNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344
Query: 383 VXXXXXXXXXXXXMAPNWL 401
M NWL
Sbjct: 345 APEDPSAKATPNKMVSNWL 363
Score = 70 (29.7 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 1 MSSDEIALNGLNTQ-LVFQD-DPLRSFNCQQHRVGDPGPKTRELTGFIDDKMF 51
MS ++ N Q ++ QD DPLR RVG+ PKTRE FI D +
Sbjct: 1 MSGKGLSPAPFNAQPMIVQDADPLR------FRVGEQDPKTREFAAFIGDHRY 47
>TAIR|locus:2061823 [details] [associations]
symbol:AT2G40640 "AT2G40640" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] UniPathway:UPA00143 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016874 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC002336 EMBL:AY168999
EMBL:AY954825 EMBL:AK175771 EMBL:AK176741 EMBL:AK227154
EMBL:AK175678 EMBL:AK175724 IPI:IPI00539766 IPI:IPI00548300
IPI:IPI00657406 PIR:A84832 RefSeq:NP_001031520.1 RefSeq:NP_850332.1
RefSeq:NP_850333.1 UniGene:At.26525 UniGene:At.44720
ProteinModelPortal:Q58FY4 SMR:Q58FY4 PaxDb:Q58FY4 PRIDE:Q58FY4
EnsemblPlants:AT2G40640.1 GeneID:818659 KEGG:ath:AT2G40640
TAIR:At2g40640 eggNOG:NOG324780 InParanoid:Q58FY4 OMA:NDATILP
PhylomeDB:Q58FY4 ProtClustDB:CLSN2680156 Genevestigator:Q58FY4
Uniprot:Q58FY4
Length = 383
Score = 568 (205.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 118/229 (51%), Positives = 154/229 (67%)
Query: 174 VTVAEADSDVYYSQYLQQGTEXXXXXXQKECVAVDNGCGISGSGDSLRAILSDPVTGNLM 233
V + + D +V S Q + +KE V + +S S +SL+AILSDPVTG LM
Sbjct: 161 VRITKPDGNVSNSHRNTQ-QKRDFASVEKERVTTTS---VS-SWESLKAILSDPVTGALM 215
Query: 234 DDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQFY 293
+DA ILPCGHSFGA G++ V +MKAC+TCS+P LE S PNLSLR V AFR+EE+
Sbjct: 216 NDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNLSLRIVVHAFRQEEDSDHI 275
Query: 294 RTCKRKREKFDQDKGSYGDSTVMDPPRG-RGVQFPFAVTDRVIIKGNKRTPQRFVGREAV 352
T KR++E+ DQ K S+ + + P+ RG+QFPF++ D +II+GNKRTP RFVGR AV
Sbjct: 276 HTLKRRKERSDQ-KRSFCIPNITETPKSSRGIQFPFSIGDHIIIEGNKRTPPRFVGRIAV 334
Query: 353 VTTQCLNGWYVVKTLDNAESVKLQYRSLAKVXXXXXXXXXXXXMAPNWL 401
+ TQCLNGWYVVKT+DN+ES+KLQ+ SLAK+ M P+WL
Sbjct: 335 IMTQCLNGWYVVKTVDNSESIKLQHCSLAKISDNSSTKVTVAEMPPSWL 383
Score = 50 (22.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 5 EIALN-GLNTQLVF--QDDPLRSFNCQQHRVGDPGPKTRELTGFIDDKMFSVDRD---RY 58
++++N ++ + VF +D+ LR RVGD G K REL + D+ F +
Sbjct: 31 QMSVNDSIDPRFVFHVEDESLR------FRVGDSGTKIRELET-VGDRHFRTQQGFCGNR 83
Query: 59 FRPQPTMFTEHHPERRD 75
TM+++ E D
Sbjct: 84 IEKDETMYSDGDDEEYD 100
>TAIR|locus:504955744 [details] [associations]
symbol:AT3G19895 "AT3G19895" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AK118963 IPI:IPI00540062 RefSeq:NP_683575.2 UniGene:At.44269
ProteinModelPortal:Q8GWB1 SMR:Q8GWB1 PaxDb:Q8GWB1 PRIDE:Q8GWB1
EnsemblPlants:AT3G19895.1 GeneID:821527 KEGG:ath:AT3G19895
TAIR:At3g19895 eggNOG:NOG268681 HOGENOM:HOG000244232
InParanoid:Q8GWB1 OMA:DDRRLFH PhylomeDB:Q8GWB1
ProtClustDB:CLSN2679994 Genevestigator:Q8GWB1 Uniprot:Q8GWB1
Length = 554
Score = 406 (148.0 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 73/168 (43%), Positives = 117/168 (69%)
Query: 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLR 278
SLR++LSDP++G ++DAM++ CGHSFG ++ V+ M C C+ + S+ PN +LR
Sbjct: 369 SLRSVLSDPISGAFLEDAMVVSCGHSFGGLMLRRVLEMSRCTLCNTEIESGSLVPNHALR 428
Query: 279 AAVQAFRREEELQFYRTC---KRKREKFDQDKGSYGDSTVMDPPRGRGVQFPFAVTDRVI 335
AA A +++++ + + +R++E DQ GD D R V +PFAV ++V+
Sbjct: 429 AAASAIKQQDDKRLFHNAAMRRRRKEMSDQMDVENGDPAT-DDGMHRVVHYPFAVNEKVL 487
Query: 336 IKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKV 383
IKGN+RTP++FVG+EA+VT+QCLNGWY++K +++ ++V+LQYRSL K+
Sbjct: 488 IKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVESGDNVRLQYRSLKKM 535
Score = 37 (18.1 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 208 DNGCGISGSGDSL 220
DNGCG+ GD L
Sbjct: 256 DNGCGV---GDLL 265
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 401 340 0.00095 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 607 (65 KB)
Total size of DFA: 233 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.40u 0.10s 25.50t Elapsed: 00:00:01
Total cpu time: 25.40u 0.10s 25.50t Elapsed: 00:00:01
Start: Mon May 20 21:14:15 2013 End: Mon May 20 21:14:16 2013