BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015757
         (401 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6DBN5|PUB62_ARATH U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62
           PE=2 SV=1
          Length = 363

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 224/414 (54%), Gaps = 64/414 (15%)

Query: 1   MSSDEIALNGLNTQLVF-QD-DPLRSFNCQQHRVGDPGPKTRELTGFIDDKMFSVDRDRY 58
           MS   ++    N Q +  QD DPLR       RVG+  PKTRE   FI D        RY
Sbjct: 1   MSGKGLSPAPFNAQPMIVQDADPLR------FRVGEQDPKTREFAAFIGDH-------RY 47

Query: 59  FRPQPTMFTEHHPERRDPPQAREWSGNATSPSTDESDGEDDDVDDDEDDDDVDEAEKNNN 118
           F          +P                 P  +                      + N 
Sbjct: 48  FAAAAAAAAAANPH----------------PHLE---------------------FRQNF 70

Query: 119 HNSNSNVTNCNNNNNSTNCGILTAGVEKMGNGKAKNQLNFGKIGNAGQN-VNNGAIVTVA 177
           ++    + N N++  S     +    E   +    N+ + G   +AG++ V+ GA++ V 
Sbjct: 71  YSEKPIIGNPNDSGGSDGEDDVDVEEEDEDDDLDGNEGDIGMNKDAGEDSVSAGAVIVVG 130

Query: 178 EADSDVYYSQYLQQGTEGSSGSGQKECVAVDNGCGISGSGD----------SLRAILSDP 227
           + D+  YYSQ+ +          ++  +A DNGC  SG  D          SLR ILSDP
Sbjct: 131 Q-DNAAYYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIESLRTILSDP 189

Query: 228 VTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287
            TG+LM DAMILPCGH+FGA G++ V +MKAC TCS+PV EDSI PNL+LR AVQAF RE
Sbjct: 190 TTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSEDSITPNLTLRVAVQAFCRE 249

Query: 288 EELQFYRTCKRKREKFDQDKGSYGDSTVMDPPRGRGVQFPFAVTDRVIIKGNKRTPQRFV 347
           E  Q     KRKRE FDQ++ ++G +      R +   FPFAV DRVIIKGNKRTP RFV
Sbjct: 250 ENSQSNHPSKRKREGFDQERRAFGVTNHSGRSRNKSNHFPFAVADRVIIKGNKRTPPRFV 309

Query: 348 GREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDSSSKPTSSKMAPNWL 401
           GREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK  +D S+K T +KM  NWL
Sbjct: 310 GREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAKATPNKMVSNWL 363


>sp|Q58FY4|PUB63_ARATH U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63
           PE=2 SV=1
          Length = 383

 Score =  243 bits (621), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 144/186 (77%)

Query: 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNL 275
           S +SL+AILSDPVTG LM+DA ILPCGHSFGA G++ V +MKAC+TCS+P LE S  PNL
Sbjct: 198 SWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNL 257

Query: 276 SLRAAVQAFRREEELQFYRTCKRKREKFDQDKGSYGDSTVMDPPRGRGVQFPFAVTDRVI 335
           SLR  V AFR+EE+     T KR++E+ DQ +     +    P   RG+QFPF++ D +I
Sbjct: 258 SLRIVVHAFRQEEDSDHIHTLKRRKERSDQKRSFCIPNITETPKSSRGIQFPFSIGDHII 317

Query: 336 IKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDSSSKPTSSK 395
           I+GNKRTP RFVGR AV+ TQCLNGWYVVKT+DN+ES+KLQ+ SLAK+SD+SS+K T ++
Sbjct: 318 IEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLAKISDNSSTKVTVAE 377

Query: 396 MAPNWL 401
           M P+WL
Sbjct: 378 MPPSWL 383


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,237,880
Number of Sequences: 539616
Number of extensions: 7637681
Number of successful extensions: 139780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 48860
Number of HSP's gapped (non-prelim): 40736
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)