Query 015757
Match_columns 401
No_of_seqs 309 out of 1404
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00504 Ubox Modified RING 99.3 1.2E-12 2.6E-17 99.7 4.6 61 223-283 1-62 (63)
2 PF04564 U-box: U-box domain; 99.3 1.6E-12 3.6E-17 103.4 4.2 67 221-287 2-70 (73)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 4.2E-12 9.1E-17 91.3 2.2 37 226-262 1-42 (42)
4 TIGR00599 rad18 DNA repair pro 99.2 2.2E-11 4.7E-16 124.9 5.5 72 219-290 22-94 (397)
5 KOG2177 Predicted E3 ubiquitin 99.2 2.2E-11 4.8E-16 112.9 4.0 108 219-329 9-126 (386)
6 KOG0823 Predicted E3 ubiquitin 99.1 3.2E-11 7E-16 114.7 3.0 54 221-274 45-102 (230)
7 PLN03208 E3 ubiquitin-protein 99.0 1.1E-10 2.5E-15 108.9 2.4 54 221-274 16-86 (193)
8 KOG0287 Postreplication repair 99.0 1.8E-10 3.9E-15 114.6 2.4 70 220-289 20-90 (442)
9 PF14835 zf-RING_6: zf-RING of 98.9 6E-10 1.3E-14 86.9 3.1 62 219-281 3-65 (65)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.6E-09 3.5E-14 76.0 1.8 37 226-262 1-39 (39)
11 COG5432 RAD18 RING-finger-cont 98.7 3.9E-09 8.4E-14 103.5 2.5 71 220-290 22-93 (391)
12 KOG0317 Predicted E3 ubiquitin 98.7 1.5E-08 3.3E-13 99.3 4.3 53 219-271 235-288 (293)
13 PF13920 zf-C3HC4_3: Zinc fing 98.7 1E-08 2.2E-13 75.6 2.3 45 223-267 2-48 (50)
14 KOG0320 Predicted E3 ubiquitin 98.6 8.3E-09 1.8E-13 95.0 1.5 52 221-272 129-183 (187)
15 PF00097 zf-C3HC4: Zinc finger 98.6 1.6E-08 3.5E-13 71.1 2.0 37 226-262 1-41 (41)
16 PF13639 zf-RING_2: Ring finge 98.6 1.5E-08 3.2E-13 72.7 1.1 39 225-263 2-44 (44)
17 PHA02929 N1R/p28-like protein; 98.5 3.5E-08 7.6E-13 95.3 2.8 46 222-267 173-227 (238)
18 PF13445 zf-RING_UBOX: RING-ty 98.5 3.9E-08 8.4E-13 71.3 1.3 29 226-255 1-33 (43)
19 cd00162 RING RING-finger (Real 98.4 1.3E-07 2.8E-12 65.7 2.6 41 225-265 1-44 (45)
20 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 99.0 2.0 51 223-273 186-242 (513)
21 smart00184 RING Ring finger. E 98.3 4.4E-07 9.6E-12 60.8 2.2 37 226-262 1-39 (39)
22 PF14634 zf-RING_5: zinc-RING 98.3 4.6E-07 1E-11 65.3 2.1 40 225-264 1-44 (44)
23 PHA02926 zinc finger-like prot 98.2 6.5E-07 1.4E-11 85.4 2.1 47 221-267 168-230 (242)
24 KOG0311 Predicted E3 ubiquitin 98.1 2.9E-07 6.4E-12 92.5 -1.4 68 217-284 37-108 (381)
25 COG5574 PEX10 RING-finger-cont 98.1 9.7E-07 2.1E-11 85.9 1.5 49 221-269 213-264 (271)
26 KOG0978 E3 ubiquitin ligase in 98.1 8.1E-07 1.7E-11 96.5 0.5 54 220-273 640-695 (698)
27 KOG2660 Locus-specific chromos 98.1 1.2E-06 2.6E-11 87.4 1.5 64 221-284 13-82 (331)
28 TIGR00570 cdk7 CDK-activating 98.0 7.3E-06 1.6E-10 81.9 5.2 49 223-271 3-58 (309)
29 PF12678 zf-rbx1: RING-H2 zinc 97.8 8.4E-06 1.8E-10 65.1 2.2 39 225-263 21-73 (73)
30 KOG4159 Predicted E3 ubiquitin 97.6 2.4E-05 5.1E-10 80.9 2.3 48 221-268 82-130 (398)
31 PF11789 zf-Nse: Zinc-finger o 97.6 2.6E-05 5.7E-10 59.7 1.4 40 222-261 10-53 (57)
32 KOG0802 E3 ubiquitin ligase [P 97.5 2.8E-05 6E-10 83.3 1.2 46 222-267 290-341 (543)
33 COG5222 Uncharacterized conser 97.5 0.0001 2.2E-09 73.3 4.0 63 224-286 275-341 (427)
34 KOG0804 Cytoplasmic Zn-finger 97.5 9.3E-05 2E-09 76.7 3.7 90 177-267 124-222 (493)
35 COG5152 Uncharacterized conser 97.4 3.3E-05 7.2E-10 72.8 0.3 44 224-267 197-241 (259)
36 KOG4628 Predicted E3 ubiquitin 97.4 8.7E-05 1.9E-09 75.4 3.1 45 224-268 230-279 (348)
37 COG5243 HRD1 HRD ubiquitin lig 97.4 7E-05 1.5E-09 76.2 2.2 46 222-267 286-345 (491)
38 KOG0297 TNF receptor-associate 97.4 0.00014 3.1E-09 75.0 4.3 62 220-281 18-82 (391)
39 KOG1813 Predicted E3 ubiquitin 97.4 8.1E-05 1.7E-09 73.7 1.8 44 224-267 242-286 (313)
40 KOG0824 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 71.7 2.2 45 225-269 9-55 (324)
41 KOG2879 Predicted E3 ubiquitin 97.1 0.0003 6.5E-09 69.2 3.0 46 222-267 238-287 (298)
42 COG5540 RING-finger-containing 97.0 0.00039 8.4E-09 69.3 2.3 44 224-267 324-372 (374)
43 KOG1645 RING-finger-containing 97.0 0.00031 6.8E-09 72.3 1.6 58 224-281 5-70 (463)
44 KOG4367 Predicted Zn-finger pr 96.7 0.00051 1.1E-08 71.3 0.5 35 220-254 1-35 (699)
45 KOG1002 Nucleotide excision re 96.5 0.00078 1.7E-08 71.3 0.5 48 222-269 535-588 (791)
46 PF12861 zf-Apc11: Anaphase-pr 96.3 0.0027 5.7E-08 52.6 2.3 45 223-267 21-82 (85)
47 KOG1734 Predicted RING-contain 96.1 0.0015 3.2E-08 64.4 0.0 54 222-275 223-289 (328)
48 KOG4185 Predicted E3 ubiquitin 95.9 0.0049 1.1E-07 60.7 2.7 86 224-309 4-107 (296)
49 KOG1039 Predicted E3 ubiquitin 95.9 0.0039 8.5E-08 63.6 2.0 46 222-267 160-221 (344)
50 KOG4265 Predicted E3 ubiquitin 95.5 0.0063 1.4E-07 61.9 1.9 45 223-267 290-336 (349)
51 KOG0825 PHD Zn-finger protein 95.3 0.0016 3.6E-08 71.5 -3.3 45 224-268 124-172 (1134)
52 KOG0828 Predicted E3 ubiquitin 95.3 0.0067 1.4E-07 64.0 1.0 46 222-267 570-634 (636)
53 PF14447 Prok-RING_4: Prokaryo 95.2 0.015 3.3E-07 44.5 2.5 47 223-270 7-53 (55)
54 KOG4172 Predicted E3 ubiquitin 95.2 0.0036 7.8E-08 47.9 -0.8 42 225-266 9-53 (62)
55 PF11793 FANCL_C: FANCL C-term 95.1 0.009 1.9E-07 47.4 1.1 45 223-267 2-66 (70)
56 KOG0827 Predicted E3 ubiquitin 94.9 0.011 2.4E-07 60.8 1.5 48 225-272 6-61 (465)
57 KOG1785 Tyrosine kinase negati 94.8 0.0092 2E-07 61.6 0.5 43 225-267 371-416 (563)
58 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.017 3.7E-07 56.5 2.4 53 220-272 110-166 (260)
59 KOG3039 Uncharacterized conser 94.8 0.015 3.4E-07 56.7 2.0 52 222-273 220-276 (303)
60 KOG4692 Predicted E3 ubiquitin 94.6 0.014 3.1E-07 59.5 1.2 46 222-267 421-467 (489)
61 KOG4275 Predicted E3 ubiquitin 94.5 0.0069 1.5E-07 60.3 -1.1 41 223-266 300-341 (350)
62 KOG3002 Zn finger protein [Gen 94.5 0.025 5.5E-07 56.8 2.8 58 221-284 46-105 (299)
63 KOG1571 Predicted E3 ubiquitin 94.5 0.017 3.6E-07 58.9 1.4 44 222-267 304-347 (355)
64 KOG3161 Predicted E3 ubiquitin 94.4 0.015 3.3E-07 63.0 0.9 55 221-277 9-72 (861)
65 KOG1001 Helicase-like transcri 94.0 0.02 4.3E-07 63.3 0.8 44 224-268 455-501 (674)
66 smart00744 RINGv The RING-vari 93.5 0.047 1E-06 40.5 1.9 39 225-263 1-49 (49)
67 COG5219 Uncharacterized conser 92.2 0.039 8.5E-07 62.2 -0.1 43 225-267 1471-1523(1525)
68 KOG0826 Predicted E3 ubiquitin 91.9 0.1 2.2E-06 52.9 2.4 47 221-267 298-346 (357)
69 PF14570 zf-RING_4: RING/Ubox 91.9 0.096 2.1E-06 39.1 1.6 41 226-266 1-47 (48)
70 KOG4642 Chaperone-dependent E3 91.2 0.15 3.4E-06 50.1 2.8 68 221-288 209-278 (284)
71 KOG2817 Predicted E3 ubiquitin 91.0 0.11 2.4E-06 53.7 1.6 46 220-265 331-383 (394)
72 PF05290 Baculo_IE-1: Baculovi 90.5 0.15 3.2E-06 45.7 1.8 48 222-269 79-134 (140)
73 KOG4362 Transcriptional regula 90.3 0.091 2E-06 57.9 0.3 63 220-282 18-84 (684)
74 PF02891 zf-MIZ: MIZ/SP-RING z 90.0 0.24 5.2E-06 36.9 2.3 41 224-265 3-50 (50)
75 KOG4739 Uncharacterized protei 88.9 0.17 3.7E-06 49.2 0.9 48 225-273 5-54 (233)
76 KOG3800 Predicted E3 ubiquitin 88.7 0.41 8.8E-06 47.9 3.4 47 225-271 2-55 (300)
77 KOG1814 Predicted E3 ubiquitin 88.6 0.33 7.2E-06 50.6 2.9 43 222-264 183-237 (445)
78 COG5175 MOT2 Transcriptional r 88.0 0.22 4.8E-06 50.8 1.1 49 222-271 14-68 (480)
79 KOG0298 DEAD box-containing he 87.5 0.15 3.3E-06 59.3 -0.4 46 220-265 1150-1197(1394)
80 KOG3039 Uncharacterized conser 87.5 0.3 6.5E-06 48.0 1.6 36 219-254 39-74 (303)
81 KOG1493 Anaphase-promoting com 87.2 0.11 2.5E-06 42.4 -1.2 32 236-267 45-81 (84)
82 KOG1941 Acetylcholine receptor 86.9 0.17 3.7E-06 52.5 -0.3 43 222-264 364-413 (518)
83 COG5236 Uncharacterized conser 86.8 0.42 9E-06 49.0 2.3 45 221-265 59-106 (493)
84 COG5194 APC11 Component of SCF 83.5 0.72 1.6E-05 38.1 1.8 28 240-267 53-81 (88)
85 KOG1812 Predicted E3 ubiquitin 81.8 1.1 2.4E-05 46.5 3.0 45 223-267 146-203 (384)
86 PF06524 NOA36: NOA36 protein; 81.6 1.3 2.8E-05 44.0 3.1 8 16-23 191-198 (314)
87 KOG3970 Predicted E3 ubiquitin 80.5 3.5 7.7E-05 40.2 5.6 42 225-266 52-104 (299)
88 PF10367 Vps39_2: Vacuolar sor 79.9 0.9 1.9E-05 37.4 1.2 31 222-252 77-109 (109)
89 COG5109 Uncharacterized conser 79.2 0.93 2E-05 46.0 1.3 46 220-265 333-385 (396)
90 PF07191 zinc-ribbons_6: zinc- 78.8 0.43 9.2E-06 38.3 -1.0 40 224-267 2-41 (70)
91 KOG2042 Ubiquitin fusion degra 77.6 3.1 6.7E-05 47.8 4.9 69 220-288 867-937 (943)
92 KOG3113 Uncharacterized conser 76.3 2.1 4.6E-05 42.3 2.8 56 216-272 104-163 (293)
93 KOG1100 Predicted E3 ubiquitin 74.8 1.6 3.6E-05 41.7 1.6 39 226-267 161-200 (207)
94 KOG1940 Zn-finger protein [Gen 74.2 1.6 3.4E-05 43.6 1.3 41 224-264 159-204 (276)
95 PF05883 Baculo_RING: Baculovi 73.9 1.6 3.4E-05 39.3 1.1 31 225-255 28-67 (134)
96 PHA03096 p28-like protein; Pro 73.2 1.7 3.7E-05 43.6 1.3 41 224-264 179-231 (284)
97 KOG2114 Vacuolar assembly/sort 73.2 2.7 5.8E-05 47.7 2.9 39 224-264 841-880 (933)
98 KOG2930 SCF ubiquitin ligase, 71.4 1.9 4.1E-05 37.3 1.0 26 240-265 80-106 (114)
99 KOG0314 Predicted E3 ubiquitin 69.2 2.7 5.8E-05 44.7 1.7 69 220-288 216-288 (448)
100 KOG2932 E3 ubiquitin ligase in 69.0 2.3 5.1E-05 43.2 1.2 46 221-267 88-134 (389)
101 PF03066 Nucleoplasmin: Nucleo 67.2 1.8 3.9E-05 39.4 0.0 19 50-68 74-92 (149)
102 COG5627 MMS21 DNA repair prote 65.1 6.7 0.00015 38.5 3.4 55 223-277 189-249 (275)
103 PTZ00415 transmission-blocking 64.1 3.6 7.7E-05 49.9 1.6 22 90-111 153-174 (2849)
104 PF08746 zf-RING-like: RING-li 64.0 5.3 0.00011 28.8 1.9 37 226-262 1-43 (43)
105 KOG0289 mRNA splicing factor [ 63.9 3.3 7.3E-05 43.8 1.2 45 224-268 1-47 (506)
106 KOG4445 Uncharacterized conser 63.7 1.6 3.5E-05 44.1 -1.1 44 224-267 116-186 (368)
107 PF10446 DUF2457: Protein of u 61.6 4.2 9E-05 43.1 1.4 9 365-373 393-401 (458)
108 PF03854 zf-P11: P-11 zinc fin 59.3 2.8 6.1E-05 31.4 -0.2 36 233-268 10-47 (50)
109 KOG3268 Predicted E3 ubiquitin 58.5 5.7 0.00012 37.6 1.6 45 224-268 166-229 (234)
110 PF07800 DUF1644: Protein of u 58.5 4.5 9.8E-05 37.4 0.9 20 223-242 2-21 (162)
111 KOG3130 Uncharacterized conser 56.5 7.8 0.00017 40.8 2.3 6 34-39 203-208 (514)
112 KOG3130 Uncharacterized conser 55.6 6.6 0.00014 41.3 1.7 7 183-189 366-372 (514)
113 PF10272 Tmpp129: Putative tra 55.2 5.7 0.00012 41.1 1.2 30 241-270 311-354 (358)
114 KOG2979 Protein involved in DN 53.9 6.3 0.00014 39.1 1.1 44 222-265 175-222 (262)
115 KOG1428 Inhibitor of type V ad 53.5 16 0.00034 44.4 4.3 60 222-287 3485-3558(3738)
116 PF12906 RINGv: RING-variant d 53.2 9.8 0.00021 27.9 1.8 37 226-262 1-47 (47)
117 KOG2169 Zn-finger transcriptio 53.2 14 0.0003 41.1 3.8 70 212-282 295-371 (636)
118 PHA02825 LAP/PHD finger-like p 53.1 11 0.00024 34.9 2.5 45 222-267 7-59 (162)
119 COG3813 Uncharacterized protei 52.5 11 0.00023 30.8 2.0 42 235-277 21-62 (84)
120 KOG1815 Predicted E3 ubiquitin 52.0 6.4 0.00014 41.5 0.9 35 221-255 68-103 (444)
121 PF14353 CpXC: CpXC protein 51.8 7.6 0.00017 33.7 1.2 44 224-267 2-49 (128)
122 KOG0825 PHD Zn-finger protein 51.1 9 0.0002 43.4 1.9 47 221-267 94-154 (1134)
123 KOG2023 Nuclear transport rece 50.7 7.9 0.00017 43.2 1.4 12 97-108 353-364 (885)
124 KOG3579 Predicted E3 ubiquitin 49.6 10 0.00022 38.3 1.8 34 222-255 267-304 (352)
125 PF05086 Dicty_REP: Dictyostel 48.9 7.9 0.00017 43.7 1.1 16 92-107 892-907 (911)
126 PF05605 zf-Di19: Drought indu 47.8 6.8 0.00015 29.2 0.3 35 223-264 2-39 (54)
127 PF04216 FdhE: Protein involve 46.0 5.5 0.00012 39.5 -0.6 42 224-265 173-220 (290)
128 cd00021 BBOX B-Box-type zinc f 45.1 7.6 0.00016 26.2 0.1 31 295-326 2-36 (39)
129 PHA02862 5L protein; Provision 42.6 14 0.00031 33.8 1.5 43 225-268 4-54 (156)
130 PF12660 zf-TFIIIC: Putative z 42.4 5.8 0.00013 33.6 -0.9 42 225-267 16-66 (99)
131 COG5220 TFB3 Cdk activating ki 42.3 6.7 0.00014 38.7 -0.7 45 223-267 10-64 (314)
132 KOG2034 Vacuolar sorting prote 40.0 11 0.00024 43.1 0.5 34 222-255 816-851 (911)
133 KOG3899 Uncharacterized conser 39.4 10 0.00022 38.4 0.1 30 241-270 325-368 (381)
134 smart00502 BBC B-Box C-termina 37.6 12 0.00027 31.0 0.3 42 338-388 18-59 (127)
135 PF01363 FYVE: FYVE zinc finge 37.0 14 0.0003 28.4 0.5 34 221-254 7-44 (69)
136 KOG4032 Uncharacterized conser 36.6 22 0.00047 33.7 1.8 25 91-115 130-154 (184)
137 cd00350 rubredoxin_like Rubred 36.4 23 0.00049 24.0 1.4 10 256-265 17-26 (33)
138 PF10571 UPF0547: Uncharacteri 36.3 19 0.00041 23.4 1.0 9 225-233 2-10 (26)
139 PF14569 zf-UDP: Zinc-binding 36.0 23 0.0005 29.2 1.6 43 225-267 11-62 (80)
140 TIGR01562 FdhE formate dehydro 35.3 16 0.00035 37.1 0.7 41 225-265 186-233 (305)
141 KOG4140 Nuclear protein Ataxin 34.8 1.3E+02 0.0029 32.7 7.3 42 42-83 87-131 (659)
142 KOG1952 Transcription factor N 32.8 57 0.0012 37.6 4.5 42 222-263 190-243 (950)
143 PRK03564 formate dehydrogenase 32.2 23 0.0005 36.0 1.3 41 224-264 188-234 (309)
144 PF15234 LAT: Linker for activ 31.9 51 0.0011 31.5 3.4 44 61-108 83-127 (230)
145 PRK14559 putative protein seri 31.6 30 0.00065 38.6 2.2 12 256-267 41-52 (645)
146 KOG2652 RNA polymerase II tran 31.1 34 0.00073 35.3 2.3 10 92-101 261-270 (348)
147 PF10235 Cript: Microtubule-as 31.0 27 0.00057 29.5 1.3 35 225-267 46-80 (90)
148 COG4058 McrA Methyl coenzyme M 30.9 13 0.00028 38.7 -0.7 21 358-378 427-447 (553)
149 PLN02436 cellulose synthase A 30.8 35 0.00076 40.1 2.6 43 225-267 38-89 (1094)
150 KOG1812 Predicted E3 ubiquitin 28.6 27 0.00058 36.4 1.1 39 224-262 307-351 (384)
151 PF06906 DUF1272: Protein of u 28.6 45 0.00097 25.9 2.0 44 225-269 7-54 (57)
152 PF09538 FYDLN_acid: Protein o 28.6 29 0.00064 30.0 1.2 11 225-235 11-21 (108)
153 KOG4185 Predicted E3 ubiquitin 28.6 12 0.00025 36.9 -1.5 42 224-265 208-265 (296)
154 smart00064 FYVE Protein presen 28.5 35 0.00075 26.1 1.5 33 222-254 9-45 (68)
155 KOG2068 MOT2 transcription fac 28.3 38 0.00082 34.8 2.1 43 225-267 251-298 (327)
156 KOG0772 Uncharacterized conser 28.1 68 0.0015 35.1 4.0 14 179-192 252-265 (641)
157 PF06844 DUF1244: Protein of u 27.9 23 0.00051 28.3 0.4 12 244-255 11-22 (68)
158 KOG2789 Putative Zn-finger pro 26.2 32 0.00068 36.3 1.1 32 222-253 73-106 (482)
159 PF10497 zf-4CXXC_R1: Zinc-fin 26.0 41 0.00089 28.8 1.6 24 242-265 37-70 (105)
160 PF04615 Utp14: Utp14 protein; 25.7 37 0.00081 38.1 1.7 10 369-378 303-312 (735)
161 PF14446 Prok-RING_1: Prokaryo 25.7 55 0.0012 25.1 2.1 28 225-252 7-38 (54)
162 KOG4363 Putative growth respon 25.4 42 0.00091 33.4 1.7 33 80-114 38-70 (270)
163 PLN02189 cellulose synthase 25.3 49 0.0011 38.9 2.5 43 225-267 36-87 (1040)
164 PLN02638 cellulose synthase A 25.3 51 0.0011 38.9 2.6 43 225-267 19-70 (1079)
165 smart00336 BBOX B-Box-type zin 24.7 31 0.00067 23.4 0.5 32 294-326 4-39 (42)
166 KOG3842 Adaptor protein Pellin 24.4 48 0.001 34.1 2.0 29 239-268 376-415 (429)
167 COG5113 UFD2 Ubiquitin fusion 23.7 1E+02 0.0022 34.8 4.3 70 219-288 850-921 (929)
168 COG5242 TFB4 RNA polymerase II 23.6 44 0.00095 33.0 1.5 15 222-236 259-273 (296)
169 PF03115 Astro_capsid: Astrovi 23.6 27 0.00057 39.9 0.0 27 89-115 677-704 (787)
170 KOG2487 RNA polymerase II tran 23.6 36 0.00079 34.3 0.9 14 256-269 287-300 (314)
171 smart00647 IBR In Between Ring 23.4 32 0.0007 25.4 0.4 15 240-254 45-59 (64)
172 TIGR00627 tfb4 transcription f 23.1 51 0.0011 33.1 1.9 7 258-264 271-277 (279)
173 cd00729 rubredoxin_SM Rubredox 22.9 51 0.0011 22.6 1.3 9 257-265 19-27 (34)
174 COG1592 Rubrerythrin [Energy p 22.9 48 0.001 30.9 1.6 25 223-265 134-158 (166)
175 PLN02400 cellulose synthase 22.2 54 0.0012 38.7 2.1 43 225-267 38-89 (1085)
176 PRK11088 rrmA 23S rRNA methylt 22.1 48 0.001 32.2 1.4 23 224-246 3-28 (272)
177 PF01485 IBR: IBR domain; Int 22.1 28 0.00061 25.7 -0.1 29 225-253 20-58 (64)
178 PRK04023 DNA polymerase II lar 21.8 72 0.0016 37.5 2.9 46 222-268 625-675 (1121)
179 PLN02195 cellulose synthase A 21.3 73 0.0016 37.3 2.8 43 225-267 8-59 (977)
180 PF05086 Dicty_REP: Dictyostel 21.0 45 0.00097 38.0 1.1 24 83-106 886-909 (911)
181 cd00065 FYVE FYVE domain; Zinc 21.0 48 0.001 24.2 1.0 30 225-254 4-37 (57)
182 PF15616 TerY-C: TerY-C metal 20.6 48 0.001 29.8 1.0 43 220-267 74-116 (131)
183 KOG2231 Predicted E3 ubiquitin 20.5 61 0.0013 36.4 2.0 43 225-267 2-52 (669)
184 PLN02915 cellulose synthase A 20.3 72 0.0016 37.6 2.5 43 225-267 17-68 (1044)
No 1
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.33 E-value=1.2e-12 Score=99.71 Aligned_cols=61 Identities=23% Similarity=0.478 Sum_probs=56.0
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHH
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQA 283 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~ 283 (401)
+|.||||+++|.+||+++|||+||+.||.+|++ ...||+|+.++...++.+|..|+++++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 368999999999999999999999999999997 5689999999998999999999988753
No 2
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.30 E-value=1.6e-12 Score=103.42 Aligned_cols=67 Identities=27% Similarity=0.504 Sum_probs=56.1
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
.+.|.||||+++|.|||+++|||+|++.||.+|+. ...||.|+.++...++.+|..|+..++.+...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 46899999999999999999999999888664
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.22 E-value=4.2e-12 Score=91.25 Aligned_cols=37 Identities=32% Similarity=0.703 Sum_probs=30.1
Q ss_pred cccccccccCceecCCCCccccccHHhhhc-----ccCCCCC
Q 015757 226 DPVTGNLMDDAMILPCGHSFGAAGVQHVIR-----MKACYTC 262 (401)
Q Consensus 226 CPIClelf~dPVtLpCGHsFC~~CI~~~~~-----~~~CPvC 262 (401)
||||+++|++||+|+|||+||+.||.++|+ ...||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999996 1479987
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=2.2e-11 Score=124.88 Aligned_cols=72 Identities=17% Similarity=0.353 Sum_probs=64.5
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEEL 290 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~~ 290 (401)
.++..+.|+||+++|.+||+++|||+||..||..|+. ...||+|+..+....+..|..|.++|+.|+..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhHH
Confidence 4567789999999999999999999999999999997 45799999999888899999999999999876644
No 5
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.2e-11 Score=112.95 Aligned_cols=108 Identities=20% Similarity=0.354 Sum_probs=82.9
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHHHh----hh
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQ----FY 293 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~~~----~~ 293 (401)
.+.+.+.||||++.|.+|++++|||+||+.||..+|. ...||.|+. ... .+.+|..+.++++.+....... ..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~~~~~~~ 86 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSRPLGSKE 86 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcccccccc
Confidence 3457789999999999999999999999999999886 458999996 333 6779999999999887754331 22
Q ss_pred hhHHhhhhhcccccCc-CCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRKREKFDQDKGS-YGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H~E~Lel~kc~-~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..|.+.+.++ |. +.... |.....|+.|.+ |+.
T Consensus 87 ~~c~~~~~~~~~~-c~~~~~~~c~~c~~~~~h~~h~~~~~~ 126 (386)
T KOG2177|consen 87 ELCEKHGEELKLF-CEEDEKLLCVLCRESGEHRGHPVLPLE 126 (386)
T ss_pred hhhhhcCCcceEE-ecccccccCCCCCCcccccCCccccHH
Confidence 2799999987666 44 33333 444677999987 664
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.2e-11 Score=114.69 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=47.9
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc----ccCCCCCCCCccCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~~~~~~l~pN 274 (401)
...|.|.||++.-+|||++.|||.|||.||.+|+. ...||+|+..++.+.+.|-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 35688999999999999999999999999999997 4579999999987766664
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=1.1e-10 Score=108.91 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=46.7
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc-----------------ccCCCCCCCCccCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-----------------MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-----------------~~~CPvCr~~~~~~~l~pN 274 (401)
...+.||||++.+++||+++|||.||+.||.+|+. ...||+|+..+....+.+.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 35689999999999999999999999999999873 2479999999987766654
No 8
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.98 E-value=1.8e-10 Score=114.59 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=63.7
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEE 289 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~ 289 (401)
+...|.|-||.++|+-||++||||+||..||..++. ...||.|..++....+..|+.|..+++.+...+.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999997 6789999999999999999999999999877654
No 9
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.93 E-value=6e-10 Score=86.92 Aligned_cols=62 Identities=21% Similarity=0.448 Sum_probs=36.0
Q ss_pred ccccccccccccccccCceec-CCCCccccccHHhhhcccCCCCCCCCccCCCCCccHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAV 281 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~pN~aLr~Lv 281 (401)
.+++.|.|++|.++|+.||.+ .|.|.||+.||...+. ..||+|..+....++..|..|..++
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChHHHHHHHhhhhhhccC
Confidence 356778999999999999975 5999999999988774 4599999999999999999987764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.81 E-value=1.6e-09 Score=76.04 Aligned_cols=37 Identities=27% Similarity=0.663 Sum_probs=32.0
Q ss_pred cccccccccCc-eecCCCCccccccHHhhhc-ccCCCCC
Q 015757 226 DPVTGNLMDDA-MILPCGHSFGAAGVQHVIR-MKACYTC 262 (401)
Q Consensus 226 CPIClelf~dP-VtLpCGHsFC~~CI~~~~~-~~~CPvC 262 (401)
||||.+.+.+| +.++|||+||..||.+|++ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 6789999999999999987 6689987
No 11
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.74 E-value=3.9e-09 Score=103.51 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=62.7
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEEL 290 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~~ 290 (401)
|...+.|-||.++|+-|+.++|||+||..||.+++. ...||+|+.......++.+..++.+++.+...++.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~ 93 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDL 93 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHH
Confidence 345578999999999999999999999999999998 67899999999888888999999999888775543
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-08 Score=99.29 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=46.2
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCC
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSI 271 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l 271 (401)
..+....|.||++...+|.-+||||.||+.||..|.. ...||.||..+....+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 3356688999999999999999999999999999997 5579999999876544
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.67 E-value=1e-08 Score=75.63 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=39.3
Q ss_pred ccccccccccccCceecCCCCc-cccccHHhhhc-ccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
+..|+||++.+.+++.+||||. ||..|+.+++. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999999999999999 99999999986 678999999864
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.3e-09 Score=95.01 Aligned_cols=52 Identities=15% Similarity=0.420 Sum_probs=44.1
Q ss_pred cccccccccccccc--CceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCC
Q 015757 221 RAILSDPVTGNLMD--DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIA 272 (401)
Q Consensus 221 ~e~LsCPIClelf~--dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~ 272 (401)
+..+.||||++-+. .||.+.|||.||+.||+..++ +..||+|++.+..+.+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence 34578999999886 467789999999999999987 77899999988876654
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=1.6e-08 Score=71.08 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=34.0
Q ss_pred cccccccccCce-ecCCCCccccccHHhhhc---ccCCCCC
Q 015757 226 DPVTGNLMDDAM-ILPCGHSFGAAGVQHVIR---MKACYTC 262 (401)
Q Consensus 226 CPIClelf~dPV-tLpCGHsFC~~CI~~~~~---~~~CPvC 262 (401)
|+||++.+.+|+ +++|||+||..||.+|++ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999997 4579987
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.58 E-value=1.5e-08 Score=72.71 Aligned_cols=39 Identities=23% Similarity=0.611 Sum_probs=33.7
Q ss_pred cccccccccc---CceecCCCCccccccHHhhhc-ccCCCCCC
Q 015757 225 SDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR-MKACYTCS 263 (401)
Q Consensus 225 sCPIClelf~---dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr 263 (401)
.|+||++.|. .++.++|||.||..||..|++ ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 577889999999999999997 66899996
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.54 E-value=3.5e-08 Score=95.34 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=38.6
Q ss_pred cccccccccccccCc--------eecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDA--------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dP--------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+..||||++.+.++ +.++|||.||..||.+|++ ...||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456899999987653 5567999999999999987 568999998765
No 18
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.50 E-value=3.9e-08 Score=71.28 Aligned_cols=29 Identities=31% Similarity=0.706 Sum_probs=21.0
Q ss_pred cccccccccC----ceecCCCCccccccHHhhhc
Q 015757 226 DPVTGNLMDD----AMILPCGHSFGAAGVQHVIR 255 (401)
Q Consensus 226 CPIClelf~d----PVtLpCGHsFC~~CI~~~~~ 255 (401)
||||.+ |.+ |++|+|||+||+.||.+++.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 999999 888 99999999999999999886
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.43 E-value=1.3e-07 Score=65.69 Aligned_cols=41 Identities=22% Similarity=0.582 Sum_probs=36.0
Q ss_pred ccccccccccCceecC-CCCccccccHHhhhc--ccCCCCCCCC
Q 015757 225 SDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRP 265 (401)
Q Consensus 225 sCPIClelf~dPVtLp-CGHsFC~~CI~~~~~--~~~CPvCr~~ 265 (401)
.|+||.+.+.+++.++ |||.||..|+..|+. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888777 999999999999986 4579999875
No 20
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.2e-07 Score=99.03 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=45.0
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhc------ccCCCCCCCCccCCCCCc
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~------~~~CPvCr~~~~~~~l~p 273 (401)
+..||||++...-|+.+.|||.||..||.++|. ...||+|+..+..+++.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 568999999999999999999999999999996 347999999988766554
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.28 E-value=4.4e-07 Score=60.76 Aligned_cols=37 Identities=27% Similarity=0.730 Sum_probs=33.6
Q ss_pred cccccccccCceecCCCCccccccHHhhhc--ccCCCCC
Q 015757 226 DPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTC 262 (401)
Q Consensus 226 CPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvC 262 (401)
|+||++....++.++|||.||..|+..|+. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999986 4569987
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.26 E-value=4.6e-07 Score=65.31 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=34.2
Q ss_pred ccccccccc---cCceecCCCCccccccHHhhhc-ccCCCCCCC
Q 015757 225 SDPVTGNLM---DDAMILPCGHSFGAAGVQHVIR-MKACYTCSR 264 (401)
Q Consensus 225 sCPIClelf---~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~ 264 (401)
.|+||.+.+ ..|++++|||+||..|+..... ...||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 399999988 4688899999999999998873 568999974
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.19 E-value=6.5e-07 Score=85.43 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=37.4
Q ss_pred ccccccccccccccC---------ceecCCCCccccccHHhhhcc-------cCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLMDD---------AMILPCGHSFGAAGVQHVIRM-------KACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf~d---------PVtLpCGHsFC~~CI~~~~~~-------~~CPvCr~~~~ 267 (401)
.++..|+||++...+ ++..+|+|+||..||..|.+. ..||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 356789999997633 355679999999999999862 35999998865
No 24
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.9e-07 Score=92.48 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=54.2
Q ss_pred ccccccccccccccccccCceecC-CCCccccccHHhhhc--ccCCCCCCCCcc-CCCCCccHHHHHHHHHH
Q 015757 217 GDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRPVL-EDSIAPNLSLRAAVQAF 284 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~--~~~CPvCr~~~~-~~~l~pN~aLr~Lve~~ 284 (401)
...+...+.||||+++++..++++ |+|.||..||...+. ...||.||+.+. ...|.++...-.|+..+
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345567889999999999999887 999999999988876 678999998875 45677666555555443
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.7e-07 Score=85.86 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=41.9
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc---ccCCCCCCCCccCC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRPVLED 269 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~~~ 269 (401)
..++.|+||++....|+.++|||.||+.||-..|. .-.||.||+.+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 56789999999999999999999999999998453 33599999987644
No 26
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=8.1e-07 Score=96.53 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=47.8
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCc
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~p 273 (401)
....|.||+|..-++|.|++.|||.||..|++..++ .+.||.|.+.|...++.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 356789999999999999999999999999999987 679999999998766643
No 27
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.07 E-value=1.2e-06 Score=87.43 Aligned_cols=64 Identities=20% Similarity=0.376 Sum_probs=53.8
Q ss_pred ccccccccccccccCceecC-CCCccccccHHhhhc-ccCCCCCCCCccCC----CCCccHHHHHHHHHH
Q 015757 221 RAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLED----SIAPNLSLRAAVQAF 284 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~~~----~l~pN~aLr~Lve~~ 284 (401)
....+|.+|..+|.||.++. |-|+||+.||.+++. ...||.|...+... .+..+..|+.++..+
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 45568999999999999987 999999999999997 77999999877654 455677888777666
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=7.3e-06 Score=81.90 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=37.4
Q ss_pred cccccccccc-ccCc----eecCCCCccccccHHhhhc--ccCCCCCCCCccCCCC
Q 015757 223 ILSDPVTGNL-MDDA----MILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (401)
Q Consensus 223 ~LsCPIClel-f~dP----VtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l 271 (401)
+..||+|... +..| ++.+|||.||..||...|. ...||.|+.++....+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 3479999883 3344 2236999999999999885 4589999999886653
No 29
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.84 E-value=8.4e-06 Score=65.12 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=31.7
Q ss_pred ccccccccccCc-------------eecCCCCccccccHHhhhc-ccCCCCCC
Q 015757 225 SDPVTGNLMDDA-------------MILPCGHSFGAAGVQHVIR-MKACYTCS 263 (401)
Q Consensus 225 sCPIClelf~dP-------------VtLpCGHsFC~~CI~~~~~-~~~CPvCr 263 (401)
.|+||++.|.+| +..+|||.|...||.+|++ ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999998432 3347999999999999998 66999997
No 30
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.4e-05 Score=80.94 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=43.2
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
+.+|.|.||...|..||++||||+||..||.+.+. ...||.|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 67889999999999999999999999999998775 5589999988764
No 31
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.59 E-value=2.6e-05 Score=59.75 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=29.0
Q ss_pred cccccccccccccCceec-CCCCccccccHHhhhc---ccCCCC
Q 015757 222 AILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR---MKACYT 261 (401)
Q Consensus 222 e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~---~~~CPv 261 (401)
..+.|||++..|.+||+. .|||+|.+..|..++. ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999999999986 6999999999999994 457998
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=2.8e-05 Score=83.29 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=40.8
Q ss_pred cccccccccccccC-----ceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDD-----AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~d-----PVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+..|+||.+.+.. |..++|||.||..|+..|++ ..+||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 45689999999988 89999999999999999998 779999998443
No 33
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.47 E-value=0.0001 Score=73.27 Aligned_cols=63 Identities=29% Similarity=0.548 Sum_probs=52.1
Q ss_pred cccccccccccCceecC-CCCccccccHHhhhc--ccCCCCCCCC-ccCCCCCccHHHHHHHHHHHH
Q 015757 224 LSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRP-VLEDSIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 224 LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~--~~~CPvCr~~-~~~~~l~pN~aLr~Lve~~~~ 286 (401)
|.||+|..+++.|+.++ |+|.||..||...+- -+.||.|... +....+.++...+.-|+.++.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 89999999999999997 899999999997763 5789999753 345667788877777777765
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.45 E-value=9.3e-05 Score=76.74 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=58.7
Q ss_pred ccCChhHHHHHhhhcCcCCCCCCCC---c-ceeEecCCC-CCCCCccccccccccccccccccCce----ecCCCCcccc
Q 015757 177 AEADSDVYYSQYLQQGTEGSSGSGQ---K-ECVAVDNGC-GISGSGDSLRAILSDPVTGNLMDDAM----ILPCGHSFGA 247 (401)
Q Consensus 177 ~~~D~~~yys~~l~~~~~~~~~~~~---k-~~~~~~~~~-~is~~~~~l~e~LsCPIClelf~dPV----tLpCGHsFC~ 247 (401)
+-+|.+.||..+..-+.....+..- . .++.+..+. +.+.....+-+..+||||++-|.+-+ ++.|.|+|-.
T Consensus 124 ~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s~d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~ 203 (493)
T KOG0804|consen 124 DQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTESEDGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHC 203 (493)
T ss_pred cchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEecccCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccch
Confidence 3378999999887633322211111 1 123333332 23334445567789999999998664 5679999999
Q ss_pred ccHHhhhcccCCCCCCCCcc
Q 015757 248 AGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 248 ~CI~~~~~~~~CPvCr~~~~ 267 (401)
.|+.+|| -.+||+||-...
T Consensus 204 ~cl~~w~-~~scpvcR~~q~ 222 (493)
T KOG0804|consen 204 SCLMKWW-DSSCPVCRYCQS 222 (493)
T ss_pred HHHhhcc-cCcChhhhhhcC
Confidence 9999999 457999986543
No 35
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.44 E-value=3.3e-05 Score=72.76 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=38.5
Q ss_pred cccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
|.|-||.+-|+.||++.|||+||..|..+..+ ...|-+|.+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 68999999999999999999999999776655 778999987643
No 36
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=8.7e-05 Score=75.40 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=37.6
Q ss_pred cccccccccccCc---eecCCCCccccccHHhhhc-c-cCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDA---MILPCGHSFGAAGVQHVIR-M-KACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dP---VtLpCGHsFC~~CI~~~~~-~-~~CPvCr~~~~~ 268 (401)
.+|.||+|.|..- +.|||+|.|...||..|+. . ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4899999999742 5689999999999999996 3 459999987654
No 37
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=7e-05 Score=76.16 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=39.1
Q ss_pred ccccccccccc-cc------------CceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNL-MD------------DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClel-f~------------dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+-.|.||++. |+ .|..+||||.+...|++.|.+ ..+||+||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 45579999997 44 348899999999999999998 789999999853
No 38
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.39 E-value=0.00014 Score=75.03 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=49.6
Q ss_pred cccccccccccccccCceec-CCCCccccccHHhhhc-ccCCCCCCCCccCCCCCc-cHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP-NLSLRAAV 281 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~p-N~aLr~Lv 281 (401)
+.+.+.||+|...+.+|+.. .|||.||..|+..|.. ...||.|+..+......+ ...++..+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~ 82 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRREL 82 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHH
Confidence 56789999999999999995 8999999999999987 578999988877654443 33334433
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8.1e-05 Score=73.72 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=38.9
Q ss_pred cccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
|.|-||...|.+||++.|||+||..|-.+.++ ...|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 56999999999999999999999999887776 678999987654
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00017 Score=71.68 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=39.8
Q ss_pred ccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCC
Q 015757 225 SDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLED 269 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~ 269 (401)
.|+||+....-||.+.|+|-||..||+.... .+.|++||.++...
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 5999999999999999999999999997654 56799999998743
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0003 Score=69.19 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.7
Q ss_pred cccccccccccccCceecC-CCCccccccHHhhhc---ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~---~~~CPvCr~~~~ 267 (401)
....||+|++.-..|.+.. |||.||..||..... .+.||.|+....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4557999999999998876 999999999998765 579999998754
No 42
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00039 Score=69.32 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=37.1
Q ss_pred ccccccccccc---CceecCCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~---dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
..|.||++-|. .=++|||.|.|...|+.+|+- ...||+||.+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 46999999774 246789999999999999996 568999998865
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00031 Score=72.25 Aligned_cols=58 Identities=26% Similarity=0.493 Sum_probs=47.5
Q ss_pred cccccccccccCc-----eecCCCCccccccHHhhhc---ccCCCCCCCCccCCCCCccHHHHHHH
Q 015757 224 LSDPVTGNLMDDA-----MILPCGHSFGAAGVQHVIR---MKACYTCSRPVLEDSIAPNLSLRAAV 281 (401)
Q Consensus 224 LsCPIClelf~dP-----VtLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~~~~l~pN~aLr~Lv 281 (401)
.+||||++.+.-| |++.|||.|...||++|+. .+.||.|......+.+.+-.++|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 4799999988765 5677999999999999995 45899999888888888777775433
No 44
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.67 E-value=0.00051 Score=71.25 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=31.0
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhh
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~ 254 (401)
++++|.||||..+|++|++|+|||+.|+.|-...+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 35789999999999999999999999999976543
No 45
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.49 E-value=0.00078 Score=71.32 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=41.7
Q ss_pred cccccccccccccCceecCCCCccccccHHhhhc------ccCCCCCCCCccCC
Q 015757 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR------MKACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~------~~~CPvCr~~~~~~ 269 (401)
....|.+|.+.-.|++..+|.|.||+.||..+.. ..+||+|...++..
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4457999999999999999999999999998885 45899999877643
No 46
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.28 E-value=0.0027 Score=52.63 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=33.0
Q ss_pred cccccccccccc-----------C-cee-cCCCCccccccHHhhhc----ccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMD-----------D-AMI-LPCGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~-----------d-PVt-LpCGHsFC~~CI~~~~~----~~~CPvCr~~~~ 267 (401)
+-.|+||...|. + |++ ..|+|.|...||.+|+. ...||.||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334666665553 2 433 46999999999999997 358999998754
No 47
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0015 Score=64.36 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=42.7
Q ss_pred cccccccccccccCce----------ecCCCCccccccHHhhhc---ccCCCCCCCCccCCCCCccH
Q 015757 222 AILSDPVTGNLMDDAM----------ILPCGHSFGAAGVQHVIR---MKACYTCSRPVLEDSIAPNL 275 (401)
Q Consensus 222 e~LsCPIClelf~dPV----------tLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~~~~l~pN~ 275 (401)
.+-.|.||...+..-+ .|+|+|.|..-||..|.- ..+||.|++.+..+.+.+|+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCc
Confidence 4446999988775444 689999999999999874 56899999998876666553
No 48
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0049 Score=60.67 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=60.3
Q ss_pred ccccccccccc------CceecCCCCccccccHHhhhc--ccCCCCCCCCcc-----CCCCCccHHHHHHHHHHHHHH--
Q 015757 224 LSDPVTGNLMD------DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL-----EDSIAPNLSLRAAVQAFRREE-- 288 (401)
Q Consensus 224 LsCPIClelf~------dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~-----~~~l~pN~aLr~Lve~~~~e~-- 288 (401)
+.|-||.+.|. -|..|.|||++|..|+.+... ...||.||.+.. ...+..|+++..+++.+....
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~~~~~~~ 83 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHMKKTTVE 83 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHHhccccc
Confidence 56999988774 588889999999999999886 447899998842 245667888877776652211
Q ss_pred HH---hhhhhHHhhhhhcccccCc
Q 015757 289 EL---QFYRTCKRKREKFDQDKGS 309 (401)
Q Consensus 289 ~~---~~~~~Ck~H~E~Lel~kc~ 309 (401)
.. .....|+.|...+..+.|.
T Consensus 84 ~~~~~~~~~~c~~~~~nl~~~vc~ 107 (296)
T KOG4185|consen 84 EKGEADSPPKCKEHPYNLAEFVCV 107 (296)
T ss_pred ccCcccCCcccccCcccccceeec
Confidence 10 1233488888777666554
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0039 Score=63.60 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=37.3
Q ss_pred cccccccccccccCce-----e---cCCCCccccccHHhhhc--------ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAM-----I---LPCGHSFGAAGVQHVIR--------MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPV-----t---LpCGHsFC~~CI~~~~~--------~~~CPvCr~~~~ 267 (401)
.+..|.||++...+.+ . .+|-|.||..||..|.. .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4668999999877665 2 45999999999999983 468999997754
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0063 Score=61.89 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=37.5
Q ss_pred ccccccccccccCceecCCCCc-cccccHHhhh-cccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVI-RMKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~-~~~~CPvCr~~~~ 267 (401)
...|-||+...+|-++|||.|. .|..|-.... ++..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 3579999999999999999996 4899986543 3668999999865
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.33 E-value=0.0016 Score=71.51 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=38.0
Q ss_pred cccccccccccCceec---CCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dPVtL---pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
-.||+|+.-+.|-.+. +|+|.||..||..|-+ ..+||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3799999988876554 5999999999999987 6699999988764
No 52
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0067 Score=64.03 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=35.7
Q ss_pred ccccccccccccc-----------------CceecCCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMD-----------------DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~-----------------dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
..-.|+||+.... .=+.+||-|.|.+.|+++|+. ...||+||.+++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3457999976431 234569999999999999998 347999999865
No 53
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.23 E-value=0.015 Score=44.45 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=37.1
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCccCCC
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDS 270 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~ 270 (401)
...|-.|...-...++++|||..|..|..-.. -..||.|..++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r-YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER-YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh-ccCCCCCCCcccCCC
Confidence 34688888888888999999999999975432 447999999987543
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0036 Score=47.92 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=36.1
Q ss_pred ccccccccccCceecCCCCc-cccccHHhhhc--ccCCCCCCCCc
Q 015757 225 SDPVTGNLMDDAMILPCGHS-FGAAGVQHVIR--MKACYTCSRPV 266 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGHs-FC~~CI~~~~~--~~~CPvCr~~~ 266 (401)
.|-||.+-..|-|...|||. .|..|-.+.|+ ...||+||+++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 59999999999999999994 58899888776 55899999875
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.12 E-value=0.009 Score=47.45 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=22.1
Q ss_pred cccccccccccc-C---ceec----CCCCccccccHHhhhc------------ccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMD-D---AMIL----PCGHSFGAAGVQHVIR------------MKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~-d---PVtL----pCGHsFC~~CI~~~~~------------~~~CPvCr~~~~ 267 (401)
++.|+||...+. + |+.. .|++.|...||..|+. ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998754 2 3222 5999999999999984 125999998865
No 56
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.011 Score=60.84 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=34.7
Q ss_pred ccccccccccC---c-eecCCCCccccccHHhhhc----ccCCCCCCCCccCCCCC
Q 015757 225 SDPVTGNLMDD---A-MILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIA 272 (401)
Q Consensus 225 sCPIClelf~d---P-VtLpCGHsFC~~CI~~~~~----~~~CPvCr~~~~~~~l~ 272 (401)
.|.||.+.+-. = -+-.|||+|...|+.+|.+ .+.||+|+-.+....+.
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 59999666532 1 1234999999999999997 36899999555544433
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.82 E-value=0.0092 Score=61.64 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=37.9
Q ss_pred ccccccccccCceecCCCCccccccHHhhhc---ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~ 267 (401)
.|-||-+-=+|-.+-||||..|..|+..|.. ...||.||..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 5999999999977778999999999999884 568999998776
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.82 E-value=0.017 Score=56.49 Aligned_cols=53 Identities=26% Similarity=0.564 Sum_probs=41.5
Q ss_pred cccccccccccccccC---cee-cCCCCccccccHHhhhcccCCCCCCCCccCCCCC
Q 015757 220 LRAILSDPVTGNLMDD---AMI-LPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIA 272 (401)
Q Consensus 220 l~e~LsCPIClelf~d---PVt-LpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~ 272 (401)
....+.|||+...|.. -|. .+|||.|+..+|........||+|..++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCEE
Confidence 3566899999999853 233 3799999999999875345799999999976654
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.015 Score=56.70 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=43.9
Q ss_pred cccccccccccccCc----eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCc
Q 015757 222 AILSDPVTGNLMDDA----MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 222 e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~p 273 (401)
..+.||||.+.+... |.-+|||.||..|.++.+. -..||+|..++..++++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 567899999999864 3447999999999999987 668999999998877754
No 60
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.014 Score=59.51 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=39.6
Q ss_pred cccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
++-.||||..--..+|..||+|.-|..||.+++- .+.|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4456999999999999999999999999998874 678999987654
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.0069 Score=60.32 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=33.5
Q ss_pred ccccccccccccCceecCCCCcc-ccccHHhhhcccCCCCCCCCc
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSF-GAAGVQHVIRMKACYTCSRPV 266 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsF-C~~CI~~~~~~~~CPvCr~~~ 266 (401)
...|.||.+..+|.|.|+|||.. |..|-.+. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm---~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM---NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc---ccCchHHHHH
Confidence 45699999999999999999954 77776553 3799998754
No 62
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.51 E-value=0.025 Score=56.79 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=44.4
Q ss_pred ccccccccccccccCceecCC--CCccccccHHhhhcccCCCCCCCCccCCCCCccHHHHHHHHHH
Q 015757 221 RAILSDPVTGNLMDDAMILPC--GHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAF 284 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpC--GHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~pN~aLr~Lve~~ 284 (401)
-+.|.||||.+.+.-|+ ..| ||.-|..|-.+. ...||.|+.++.. ...+++..++++.
T Consensus 46 ~~lleCPvC~~~l~~Pi-~QC~nGHlaCssC~~~~--~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPI-FQCDNGHLACSSCRTKV--SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred hhhccCchhhccCcccc-eecCCCcEehhhhhhhh--cccCCcccccccc---HHHHHHHHHHHhc
Confidence 46678999999999874 666 899999997543 4579999998772 3566776666655
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.017 Score=58.95 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=35.3
Q ss_pred cccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
...-|-||.+...+.+-+||||.-| |..-......||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhCCCCchhHHHHH
Confidence 3456999999999999999999866 7665555557999998753
No 64
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.015 Score=63.02 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=39.3
Q ss_pred cccccccccccccc----CceecCCCCccccccHHhhhcccCCCCCCCC-----ccCCCCCccHHH
Q 015757 221 RAILSDPVTGNLMD----DAMILPCGHSFGAAGVQHVIRMKACYTCSRP-----VLEDSIAPNLSL 277 (401)
Q Consensus 221 ~e~LsCPIClelf~----dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~-----~~~~~l~pN~aL 277 (401)
.+.+.|+||+..|. .||.+.|||+.|+.|++... ...|| |+.. ...+..+.|++|
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly-n~scp-~~~De~~~~~~~~e~p~n~al 72 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY-NASCP-TKRDEDSSLMQLKEEPRNYAL 72 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh-hccCC-CCccccchhcChhhcchhHHH
Confidence 35678999987774 79999999999999998755 55688 4422 112445566665
No 65
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.96 E-value=0.02 Score=63.33 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=38.6
Q ss_pred cccccccccccCceecCCCCccccccHHhhhc---ccCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~~ 268 (401)
+.|+||.+ ...++.++|||.||..|+...++ ...||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 88999999999999999999986 3469999976653
No 66
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.50 E-value=0.047 Score=40.48 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=31.2
Q ss_pred ccccccc--cccCceecCCC-----CccccccHHhhhc---ccCCCCCC
Q 015757 225 SDPVTGN--LMDDAMILPCG-----HSFGAAGVQHVIR---MKACYTCS 263 (401)
Q Consensus 225 sCPICle--lf~dPVtLpCG-----HsFC~~CI~~~~~---~~~CPvCr 263 (401)
.|-||++ .-.+|++.||. |.+-..||.+|+. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 44578888985 7789999999996 34799984
No 67
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.21 E-value=0.039 Score=62.25 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=33.5
Q ss_pred cccccccccc--C---c--eecCCCCccccccHHhhhc---ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD--D---A--MILPCGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~--d---P--VtLpCGHsFC~~CI~~~~~---~~~CPvCr~~~~ 267 (401)
.|+||-.++. | | ....|.|-|...|+.+|.+ ..+||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999988775 1 1 2234889999999999997 458999997654
No 68
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.1 Score=52.90 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=38.8
Q ss_pred ccccccccccccccCceecC-CCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+.-.||||+.--..|.++. -|-.||..||-+++. ...||+...+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 34457999999999888887 599999999999987 668999876643
No 69
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.86 E-value=0.096 Score=39.06 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred ccccccccc--CceecC--CCCccccccHHhhhc--ccCCCCCCCCc
Q 015757 226 DPVTGNLMD--DAMILP--CGHSFGAAGVQHVIR--MKACYTCSRPV 266 (401)
Q Consensus 226 CPIClelf~--dPVtLp--CGHsFC~~CI~~~~~--~~~CPvCr~~~ 266 (401)
||+|.+.+. +--..| ||+..|+-|..+.++ ...||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988772 222334 899999999998885 66899999874
No 70
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.15 Score=50.10 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=60.7
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
.+.+.|.|.+++|++||++|-|=+|-+.=|..+++ .+.=|+-+.++...++.||++|+..|.+|+.+.
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 45678899999999999999999999999998886 556799999999999999999999999987754
No 71
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=0.11 Score=53.72 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=37.4
Q ss_pred ccccccccccccccc---CceecCCCCccccccHHhhhc----ccCCCCCCCC
Q 015757 220 LRAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR----MKACYTCSRP 265 (401)
Q Consensus 220 l~e~LsCPIClelf~---dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~ 265 (401)
....|.|||-.+.-. -|+.|.|||..|+.-|.+... +..||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 356689999988765 489999999999999998875 3689999543
No 72
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.54 E-value=0.15 Score=45.71 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=41.0
Q ss_pred cccccccccccccCceecC----CCCccccccHHhhhc----ccCCCCCCCCccCC
Q 015757 222 AILSDPVTGNLMDDAMILP----CGHSFGAAGVQHVIR----MKACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLp----CGHsFC~~CI~~~~~----~~~CPvCr~~~~~~ 269 (401)
....|.||.+...|..-|. ||-+.|..|....|+ ...||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4567999999999988875 999999999999997 45899999887644
No 73
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.33 E-value=0.091 Score=57.86 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=47.2
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc----ccCCCCCCCCccCCCCCccHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIAPNLSLRAAVQ 282 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~~~~~~l~pN~aLr~Lve 282 (401)
+...+.||||...+++|+.+.|-|.||..|+-..+. ...||+|+..+.....+--.....+++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence 346678999999999999999999999999887664 357999997776555543333333443
No 74
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.03 E-value=0.24 Score=36.90 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred cccccccccccCceecC-CCCccccccHHhhhc------ccCCCCCCCC
Q 015757 224 LSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR------MKACYTCSRP 265 (401)
Q Consensus 224 LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~------~~~CPvCr~~ 265 (401)
|.|||....+.-|+... |.|.-|-. +..++. ...||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 67999999999999876 99987755 333442 4579999763
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.86 E-value=0.17 Score=49.20 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=32.3
Q ss_pred ccccccccc-cCceec-CCCCccccccHHhhhcccCCCCCCCCccCCCCCc
Q 015757 225 SDPVTGNLM-DDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 225 sCPIClelf-~dPVtL-pCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~p 273 (401)
.|..|...- .+|.-| .|+|.||..|..... ...||+|++++....+..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC-ccccccccceeeeeeccc
Confidence 477665432 455444 599999999987543 237999999876544433
No 76
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.71 E-value=0.41 Score=47.92 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=34.8
Q ss_pred ccccccc-cccCc----eecCCCCccccccHHhhhc--ccCCCCCCCCccCCCC
Q 015757 225 SDPVTGN-LMDDA----MILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (401)
Q Consensus 225 sCPICle-lf~dP----VtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l 271 (401)
.||+|.. .+..| ++-+|||..|.+|+-+... ...||.|...+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4999965 44444 2237999999999998875 5689999887765433
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=0.33 Score=50.64 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=32.7
Q ss_pred cccccccccccccC---ceecCCCCccccccHHhhhc---------ccCCCCCCC
Q 015757 222 AILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIR---------MKACYTCSR 264 (401)
Q Consensus 222 e~LsCPIClelf~d---PVtLpCGHsFC~~CI~~~~~---------~~~CPvCr~ 264 (401)
..+.|.||.+...- =+-+||+|.||+.|+..+.. ...||-++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45789999987653 35578999999999999884 236876544
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.99 E-value=0.22 Score=50.84 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=35.3
Q ss_pred ccccccccccccc--Ccee--cCCCCccccccHHhhhc--ccCCCCCCCCccCCCC
Q 015757 222 AILSDPVTGNLMD--DAMI--LPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (401)
Q Consensus 222 e~LsCPIClelf~--dPVt--LpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l 271 (401)
+++ ||+|.+.+. |--- -+||-..|+-|.....+ ..+||-||+.+.....
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 444 999999775 2222 35888888888776665 5689999998875533
No 79
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.47 E-value=0.15 Score=59.29 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=39.2
Q ss_pred ccccccccccccccc-CceecCCCCccccccHHhhhc-ccCCCCCCCC
Q 015757 220 LRAILSDPVTGNLMD-DAMILPCGHSFGAAGVQHVIR-MKACYTCSRP 265 (401)
Q Consensus 220 l~e~LsCPIClelf~-dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~ 265 (401)
+-..+.|+||+++++ .-.+..|||.+|..|+..|+. ...||.|+..
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 345568999999999 778888999999999999997 6789999743
No 80
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=0.3 Score=47.98 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.9
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhh
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~ 254 (401)
++..--.|++|+..+++||+.+=||.||+.||..++
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 333444789999999999999999999999998876
No 81
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=0.11 Score=42.36 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=25.6
Q ss_pred ceec-CCCCccccccHHhhhc----ccCCCCCCCCcc
Q 015757 236 AMIL-PCGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (401)
Q Consensus 236 PVtL-pCGHsFC~~CI~~~~~----~~~CPvCr~~~~ 267 (401)
|+++ .|.|.|-..||.+|+. ...||.||+...
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4444 4999999999999996 347999998754
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.93 E-value=0.17 Score=52.46 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=34.8
Q ss_pred cccccccccccccC-c---eecCCCCccccccHHhhhc---ccCCCCCCC
Q 015757 222 AILSDPVTGNLMDD-A---MILPCGHSFGAAGVQHVIR---MKACYTCSR 264 (401)
Q Consensus 222 e~LsCPIClelf~d-P---VtLpCGHsFC~~CI~~~~~---~~~CPvCr~ 264 (401)
-.|.|..|++.+-- | --|||.|.|...|+..+++ .++||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45789999997641 2 3378999999999999986 679999983
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.83 E-value=0.42 Score=49.05 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=37.2
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc---ccCCCCCCCC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRP 265 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~---~~~CPvCr~~ 265 (401)
++.-.|-||-+-+.=-..+||+|..|..|-.+... .+.||+||..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 45567999998877667899999999999876554 7799999965
No 84
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.54 E-value=0.72 Score=38.06 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCCCccccccHHhhhcc-cCCCCCCCCcc
Q 015757 240 PCGHSFGAAGVQHVIRM-KACYTCSRPVL 267 (401)
Q Consensus 240 pCGHsFC~~CI~~~~~~-~~CPvCr~~~~ 267 (401)
.|.|.|-..||.+|+.+ ..||.++++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 49999999999999984 48999998754
No 85
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.80 E-value=1.1 Score=46.50 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=30.6
Q ss_pred cccccccc-ccccC---ceecCCCCccccccHHhhhc-------ccCCC--CCCCCcc
Q 015757 223 ILSDPVTG-NLMDD---AMILPCGHSFGAAGVQHVIR-------MKACY--TCSRPVL 267 (401)
Q Consensus 223 ~LsCPICl-elf~d---PVtLpCGHsFC~~CI~~~~~-------~~~CP--vCr~~~~ 267 (401)
...|.||. +.... -.+..|+|.||..|+.++.+ ...|| .|...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 45799999 44332 12456999999999999986 23676 4544444
No 86
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.63 E-value=1.3 Score=44.00 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=3.8
Q ss_pred cccCCCCc
Q 015757 16 VFQDDPLR 23 (401)
Q Consensus 16 ~~~~~~~~ 23 (401)
-|=|+-.|
T Consensus 191 cfCddHvr 198 (314)
T PF06524_consen 191 CFCDDHVR 198 (314)
T ss_pred eehhhhhh
Confidence 44454444
No 87
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.53 E-value=3.5 Score=40.23 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=34.5
Q ss_pred cccccccccc--CceecCCCCccccccHHhhhc---------ccCCCCCCCCc
Q 015757 225 SDPVTGNLMD--DAMILPCGHSFGAAGVQHVIR---------MKACYTCSRPV 266 (401)
Q Consensus 225 sCPIClelf~--dPVtLpCGHsFC~~CI~~~~~---------~~~CPvCr~~~ 266 (401)
-|.+|...+. |-+.|-|-|.|.+.|+..+-. ...||.|...+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 5999988764 677888999999999998874 34799998765
No 88
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.87 E-value=0.9 Score=37.42 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=24.0
Q ss_pred cccccccccccccCc--eecCCCCccccccHHh
Q 015757 222 AILSDPVTGNLMDDA--MILPCGHSFGAAGVQH 252 (401)
Q Consensus 222 e~LsCPIClelf~dP--VtLpCGHsFC~~CI~~ 252 (401)
..-.|++|...+... ++.||||.|...|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 344699999987755 3458999999999864
No 89
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.24 E-value=0.93 Score=46.03 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=36.3
Q ss_pred ccccccccccccccc---CceecCCCCccccccHHhhhc----ccCCCCCCCC
Q 015757 220 LRAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR----MKACYTCSRP 265 (401)
Q Consensus 220 l~e~LsCPIClelf~---dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~ 265 (401)
....|.||+-.+.-. -||++.|||..-...+.+..+ .+.||.|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 356789999888765 489999999998888877665 5689999543
No 90
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=78.84 E-value=0.43 Score=38.34 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.6
Q ss_pred cccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
+.||.|...|.- .=||.+|..|-..+.....||.|..++.
T Consensus 2 ~~CP~C~~~L~~----~~~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW----QGGHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE----ETTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE----eCCEEECccccccceecccCCCcccHHH
Confidence 579999887542 2289999999988776778999988764
No 91
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=3.1 Score=47.82 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=59.9
Q ss_pred cccccccccccccccCceecC-CCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
..+.+.-||-..++.|||++| -|++.|+.=|.+++- ..+=|.||.+++...+.+|..|+.-+..+..++
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 467788999999999999999 899999999998885 445699999999999999999998887776654
No 92
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.27 E-value=2.1 Score=42.29 Aligned_cols=56 Identities=27% Similarity=0.483 Sum_probs=42.2
Q ss_pred CccccccccccccccccccC----ceecCCCCccccccHHhhhcccCCCCCCCCccCCCCC
Q 015757 216 SGDSLRAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIA 272 (401)
Q Consensus 216 ~~~~l~e~LsCPIClelf~d----PVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~ 272 (401)
+.+.....|.|||-.-.|.. .+..+|||.|-..-++... ...|++|.+.+...+.+
T Consensus 104 ~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 104 HDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ccccccceeecccccceecceEEEEEEeccceeccHHHHHHhh-hccccccCCcccccCeE
Confidence 44444677899999877764 3556899999988887655 66899999999876544
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.79 E-value=1.6 Score=41.67 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=30.9
Q ss_pred cccccccccCceecCCCC-ccccccHHhhhcccCCCCCCCCcc
Q 015757 226 DPVTGNLMDDAMILPCGH-SFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 226 CPIClelf~dPVtLpCGH-sFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
|-+|.+-=..-+.+||.| .+|..|=.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~---~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES---LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc---CccCCCCcChhh
Confidence 999998887778889998 678888754 346999987643
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=74.16 E-value=1.6 Score=43.64 Aligned_cols=41 Identities=27% Similarity=0.578 Sum_probs=32.6
Q ss_pred cccccccccc----cCceecCCCCccccccHHhhhc-ccCCCCCCC
Q 015757 224 LSDPVTGNLM----DDAMILPCGHSFGAAGVQHVIR-MKACYTCSR 264 (401)
Q Consensus 224 LsCPIClelf----~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~ 264 (401)
+.||||.+.+ ..|..++|||..-..|++...- ...||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3499998854 4788899999988888877664 568999966
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=73.89 E-value=1.6 Score=39.26 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=24.7
Q ss_pred ccccccccccC--c-eecCCC------CccccccHHhhhc
Q 015757 225 SDPVTGNLMDD--A-MILPCG------HSFGAAGVQHVIR 255 (401)
Q Consensus 225 sCPIClelf~d--P-VtLpCG------HsFC~~CI~~~~~ 255 (401)
.|.||++...+ - |.++|| |.||..|+.+|.+
T Consensus 28 EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 28 ECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 59999997766 3 445787 8899999999954
No 96
>PHA03096 p28-like protein; Provisional
Probab=73.23 E-value=1.7 Score=43.58 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=28.3
Q ss_pred ccccccccccc-Cc------eec-CCCCccccccHHhhhc----ccCCCCCCC
Q 015757 224 LSDPVTGNLMD-DA------MIL-PCGHSFGAAGVQHVIR----MKACYTCSR 264 (401)
Q Consensus 224 LsCPIClelf~-dP------VtL-pCGHsFC~~CI~~~~~----~~~CPvCr~ 264 (401)
-.|.||++... .+ -+| .|-|.||..|+..|.. ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 46999988543 22 123 4999999999999884 345665554
No 97
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=2.7 Score=47.66 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=32.4
Q ss_pred cccccccccccCcee-cCCCCccccccHHhhhcccCCCCCCC
Q 015757 224 LSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIRMKACYTCSR 264 (401)
Q Consensus 224 LsCPIClelf~dPVt-LpCGHsFC~~CI~~~~~~~~CPvCr~ 264 (401)
-.|..|.-.+.-|++ ..|||+|...|+.+- ...||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~--~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDK--EDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccC--cccCCccch
Confidence 479999999998866 579999999999822 457999965
No 98
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=1.9 Score=37.26 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCCccccccHHhhhc-ccCCCCCCCC
Q 015757 240 PCGHSFGAAGVQHVIR-MKACYTCSRP 265 (401)
Q Consensus 240 pCGHsFC~~CI~~~~~-~~~CPvCr~~ 265 (401)
-|.|.|..-||.+|++ ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 4999999999999998 4589999765
No 99
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.20 E-value=2.7 Score=44.67 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=50.6
Q ss_pred cccccccccc-cccccCceecC--CCCccccccHHhhhcccCCCCCCCCcc-CCCCCccHHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVT-GNLMDDAMILP--CGHSFGAAGVQHVIRMKACYTCSRPVL-EDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 220 l~e~LsCPIC-lelf~dPVtLp--CGHsFC~~CI~~~~~~~~CPvCr~~~~-~~~l~pN~aLr~Lve~~~~e~ 288 (401)
+.+.+.|++| .+.|.+...+. |..+||..||.+.+..+.|+.|.+.-. ...+.++..++..+.......
T Consensus 216 ~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a~~ 288 (448)
T KOG0314|consen 216 LPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVLADDLLPPKTLRDTINRILASG 288 (448)
T ss_pred CCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcccccccCCchhhHHHHHHHHhhh
Confidence 4677899999 78888888774 899999999999887777888765433 235566666666655554443
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=69.01 E-value=2.3 Score=43.17 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred ccccccccccccc-cCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLM-DDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf-~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
...-.|--|.--+ .=-.+++|.|.||..|-...- .+.||.|..++.
T Consensus 88 p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~-dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 88 PRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS-DKICPLCDDRVQ 134 (389)
T ss_pred cceEeecccCCcceeeecccccchhhhhhhhhcCc-cccCcCcccHHH
Confidence 3355788886532 233568999999999975432 568999976654
No 101
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=67.22 E-value=1.8 Score=39.36 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.3
Q ss_pred eeeeccccccCCCCCcccc
Q 015757 50 MFSVDRDRYFRPQPTMFTE 68 (401)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ 68 (401)
.-.|.-|-||...+-.|+=
T Consensus 74 ~~~vsL~~~~~~ppVtf~L 92 (149)
T PF03066_consen 74 QPMVSLDGFEITPPVTFRL 92 (149)
T ss_dssp BSEEEEEEEEESSSEEEEE
T ss_pred cceEEcCCcccCCCEEEEE
Confidence 3345556666444666763
No 102
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=65.05 E-value=6.7 Score=38.52 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred ccccccccccccCceec-CCCCccccccHHhhhc---ccCCC--CCCCCccCCCCCccHHH
Q 015757 223 ILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR---MKACY--TCSRPVLEDSIAPNLSL 277 (401)
Q Consensus 223 ~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~---~~~CP--vCr~~~~~~~l~pN~aL 277 (401)
+++|||.+....-|+.. .|.|-|-+.-|...++ +..|| .|.+......+...+.|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 46899987776666554 5999999999999887 56788 57666666666555544
No 103
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=64.14 E-value=3.6 Score=49.95 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCchhhc
Q 015757 90 STDESDGEDDDVDDDEDDDDVD 111 (401)
Q Consensus 90 ~~~~~~~~~~~d~~d~~d~~~~ 111 (401)
.+||||+||+||||+|||++.+
T Consensus 153 ~d~~~~~~~~~~~~~~~~~e~~ 174 (2849)
T PTZ00415 153 IDDDDEDEDEDDDDEEDDEEEE 174 (2849)
T ss_pred cCCccccccccccccccccccc
Confidence 3455555555444444444433
No 104
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=63.99 E-value=5.3 Score=28.83 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=21.6
Q ss_pred cccccccccCceecC---CCCccccccHHhhhcc---cCCCCC
Q 015757 226 DPVTGNLMDDAMILP---CGHSFGAAGVQHVIRM---KACYTC 262 (401)
Q Consensus 226 CPIClelf~dPVtLp---CGHsFC~~CI~~~~~~---~~CPvC 262 (401)
|.+|.++...-+.=+ |+-.+-..|+..++.. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888776655544 8888888999999972 259987
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=63.88 E-value=3.3 Score=43.77 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=40.2
Q ss_pred cccccccccccCceecC-CCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
+.|.|.+++-++||+.+ -||.|-++-|++++. ...||+-..+++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~ 47 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSI 47 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCH
Confidence 36999999999999988 899999999999997 7789999888774
No 106
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=63.71 E-value=1.6 Score=44.12 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=34.4
Q ss_pred cccccccccccC-c--eecCCCCccccccHHhhhc------------------------ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDD-A--MILPCGHSFGAAGVQHVIR------------------------MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~d-P--VtLpCGHsFC~~CI~~~~~------------------------~~~CPvCr~~~~ 267 (401)
-.|.||+--|.+ | ++++|-|.|...|+.+++. ...||+||.++.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 469999987753 3 4567999999999999872 136999998876
No 107
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=61.57 E-value=4.2 Score=43.09 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=3.5
Q ss_pred hhhhhhhHH
Q 015757 365 KTLDNAESV 373 (401)
Q Consensus 365 q~~~t~e~I 373 (401)
+-|..++|-
T Consensus 393 kGLEkKRQr 401 (458)
T PF10446_consen 393 KGLEKKRQR 401 (458)
T ss_pred echhhhhhh
Confidence 334444443
No 108
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=59.31 E-value=2.8 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.456 Sum_probs=22.4
Q ss_pred ccCceecCCC-CccccccHHhhhc-ccCCCCCCCCccC
Q 015757 233 MDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 233 f~dPVtLpCG-HsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
|.+--.+.|. |..|..|+...+. +..||+|+.+++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3444456675 7779999998886 6689999988764
No 109
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.55 E-value=5.7 Score=37.55 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=31.7
Q ss_pred cccccccccccCce-------ecCCCCccccccHHhhhc------------ccCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDAM-------ILPCGHSFGAAGVQHVIR------------MKACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dPV-------tLpCGHsFC~~CI~~~~~------------~~~CPvCr~~~~~ 268 (401)
-.|.||..+--+-. .++||..|..-|+..|++ -..||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 35777755433221 246999999999999996 1369999888653
No 110
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=58.54 E-value=4.5 Score=37.39 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.8
Q ss_pred ccccccccccccCceecCCC
Q 015757 223 ILSDPVTGNLMDDAMILPCG 242 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCG 242 (401)
+.+||||++...++|.|.|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 45799999999999999875
No 111
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.47 E-value=7.8 Score=40.76 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=2.7
Q ss_pred CCCCcc
Q 015757 34 DPGPKT 39 (401)
Q Consensus 34 ~~~~~~ 39 (401)
+|-|+|
T Consensus 203 ~skP~~ 208 (514)
T KOG3130|consen 203 DSKPDT 208 (514)
T ss_pred CCCchh
Confidence 444444
No 112
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.56 E-value=6.6 Score=41.27 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 015757 183 VYYSQYL 189 (401)
Q Consensus 183 ~yys~~l 189 (401)
.||-.|.
T Consensus 366 d~y~~F~ 372 (514)
T KOG3130|consen 366 DIYRAFV 372 (514)
T ss_pred hhhhhhe
Confidence 3444333
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.22 E-value=5.7 Score=41.12 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=23.2
Q ss_pred CCCccccccHHhhhc--------------ccCCCCCCCCccCCC
Q 015757 241 CGHSFGAAGVQHVIR--------------MKACYTCSRPVLEDS 270 (401)
Q Consensus 241 CGHsFC~~CI~~~~~--------------~~~CPvCr~~~~~~~ 270 (401)
|....|..|+.+|+. ...||.||+++...+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 556678899999983 237999999987554
No 114
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=53.87 E-value=6.3 Score=39.06 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=35.5
Q ss_pred cccccccccccccCceecC-CCCccccccHHhhhc---ccCCCCCCCC
Q 015757 222 AILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRP 265 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~---~~~CPvCr~~ 265 (401)
-.+.|||....+..|++-. |||.|-+.-|..++. +..||+-+..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3468999999999998765 999999999998885 4578875544
No 115
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=53.51 E-value=16 Score=44.38 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=39.2
Q ss_pred ccccccccccc-cc--CceecCCCCccccccHHhhhc-----------ccCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 222 AILSDPVTGNL-MD--DAMILPCGHSFGAAGVQHVIR-----------MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 222 e~LsCPIClel-f~--dPVtLpCGHsFC~~CI~~~~~-----------~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
.+-.|-||... +. -++.|-|+|.|...|..+.++ -..||+|+.++. ...|+.|++-++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In------H~~LkDLldPiKel 3558 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN------HIVLKDLLDPIKEL 3558 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh------hHHHHHHHHHHHHH
Confidence 34469999653 32 235677999998888877664 137999988754 33455555555443
No 116
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=53.21 E-value=9.8 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=21.9
Q ss_pred ccccccccc--CceecCCCC-----ccccccHHhhhc---ccCCCCC
Q 015757 226 DPVTGNLMD--DAMILPCGH-----SFGAAGVQHVIR---MKACYTC 262 (401)
Q Consensus 226 CPIClelf~--dPVtLpCGH-----sFC~~CI~~~~~---~~~CPvC 262 (401)
|-||++.-. .|++.||+- .....||.+|+. ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 557766543 368888752 346789999996 4568877
No 117
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=53.21 E-value=14 Score=41.07 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCCCCccccccccccccccccccCceec-CCCCccccccHHhhhc------ccCCCCCCCCccCCCCCccHHHHHHHH
Q 015757 212 GISGSGDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLSLRAAVQ 282 (401)
Q Consensus 212 ~is~~~~~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~------~~~CPvCr~~~~~~~l~pN~aLr~Lve 282 (401)
+.......+.-.|.|||+.-.+.-|+.. .|.|.=|-.-.. ++. +..||+|.+......+....-+..++.
T Consensus 295 d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 295 DSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred cccceeccceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 3344555667778999998877655443 366655544321 121 568999998887777766555544443
No 118
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=53.11 E-value=11 Score=34.92 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=32.7
Q ss_pred cccccccccccccCceecCCC--C---ccccccHHhhhc---ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMILPCG--H---SFGAAGVQHVIR---MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCG--H---sFC~~CI~~~~~---~~~CPvCr~~~~ 267 (401)
....|=||.+--. +...||. . .....|+++|.. ...|+.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3447999988754 4456764 3 236889999996 558999998765
No 119
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.53 E-value=11 Score=30.79 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=30.4
Q ss_pred CceecCCCCccccccHHhhhcccCCCCCCCCccCCCCCccHHH
Q 015757 235 DAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSL 277 (401)
Q Consensus 235 dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~pN~aL 277 (401)
++++-.=-|+||..|.+..+ ...||-|+..+....+.|--.|
T Consensus 21 dA~ICtfEcTFCadCae~~l-~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 21 DARICTFECTFCADCAENRL-HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred ceeEEEEeeehhHhHHHHhh-cCcCCCCCchhhcCcCChHHHH
Confidence 44444456899999998766 4579999998877766664444
No 120
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.05 E-value=6.4 Score=41.52 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=29.3
Q ss_pred ccccccccccccccC-ceecCCCCccccccHHhhhc
Q 015757 221 RAILSDPVTGNLMDD-AMILPCGHSFGAAGVQHVIR 255 (401)
Q Consensus 221 ~e~LsCPIClelf~d-PVtLpCGHsFC~~CI~~~~~ 255 (401)
.....|.||.+.+.. .+.+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 344679999998885 67778999999999999885
No 121
>PF14353 CpXC: CpXC protein
Probab=51.82 E-value=7.6 Score=33.67 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=22.7
Q ss_pred cccccccccccCceecCCCCccccccHHhhhc----ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~~~ 267 (401)
++||-|+..|.-.+-+.---..=..-..+.+. ...||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46888877776444333222111222223332 347888887654
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.14 E-value=9 Score=43.41 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=34.0
Q ss_pred ccccccccccccccCcee----cC---CCCccccccHHhhhc-------ccCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDAMI----LP---CGHSFGAAGVQHVIR-------MKACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVt----Lp---CGHsFC~~CI~~~~~-------~~~CPvCr~~~~ 267 (401)
.+.-+|++|...+.+|+- .+ |+|.||..||..|.. .-.|+.|..-+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 344579999888877543 33 999999999999984 235777765443
No 123
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=7.9 Score=43.24 Aligned_cols=12 Identities=75% Similarity=1.213 Sum_probs=4.5
Q ss_pred CCCCCCCCCCch
Q 015757 97 EDDDVDDDEDDD 108 (401)
Q Consensus 97 ~~~~d~~d~~d~ 108 (401)
||+|||||||||
T Consensus 353 eDdddDe~DDdD 364 (885)
T KOG2023|consen 353 EDDDDDEDDDDD 364 (885)
T ss_pred cccccccccccc
Confidence 333333333333
No 124
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.60 E-value=10 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=29.0
Q ss_pred cccccccccccccCceecCC----CCccccccHHhhhc
Q 015757 222 AILSDPVTGNLMDDAMILPC----GHSFGAAGVQHVIR 255 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpC----GHsFC~~CI~~~~~ 255 (401)
.-|.|-||.|-+.|---..| .|-||-.|-...++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34899999999999877777 59999999888775
No 125
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=48.94 E-value=7.9 Score=43.65 Aligned_cols=16 Identities=50% Similarity=0.896 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCCCc
Q 015757 92 DESDGEDDDVDDDEDD 107 (401)
Q Consensus 92 ~~~~~~~~~d~~d~~d 107 (401)
++||+||+++|||+|+
T Consensus 892 d~dE~e~~~~dEd~d~ 907 (911)
T PF05086_consen 892 DTDEDEDQDEDEDEDE 907 (911)
T ss_pred cccccccccccccccc
Confidence 3344444334443333
No 126
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=47.84 E-value=6.8 Score=29.15 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=19.7
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhc---ccCCCCCCC
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSR 264 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~---~~~CPvCr~ 264 (401)
.|.||.|.+.|... . ++.-|...... ...||+|..
T Consensus 2 ~f~CP~C~~~~~~~-~------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-S------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHH-H------HHHHHHhHCcCCCCCccCCCchh
Confidence 57899999954421 1 22223333222 347999975
No 127
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.97 E-value=5.5 Score=39.49 Aligned_cols=42 Identities=14% Similarity=-0.012 Sum_probs=20.6
Q ss_pred cccccccccccCceecCC---C--CccccccHHhhhc-ccCCCCCCCC
Q 015757 224 LSDPVTGNLMDDAMILPC---G--HSFGAAGVQHVIR-MKACYTCSRP 265 (401)
Q Consensus 224 LsCPIClelf~dPVtLpC---G--HsFC~~CI~~~~~-~~~CPvCr~~ 265 (401)
-.||||+..-.-.++..= | |.+|..|-..|-- -..||.|...
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 479999987665555443 3 5679999988764 4479999865
No 128
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=45.12 E-value=7.6 Score=26.18 Aligned_cols=31 Identities=10% Similarity=-0.068 Sum_probs=20.2
Q ss_pred hHHhhhh-hcccccCcCCCCcc---cCCCCCCCccc
Q 015757 295 TCKRKRE-KFDQDKGSYGDSTV---MDPPRGRGVQF 326 (401)
Q Consensus 295 ~Ck~H~E-~Lel~kc~~~e~~~---~~s~~hk~hqf 326 (401)
.|..|++ ++.+|+..++..+| .... |++|++
T Consensus 2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~-H~~H~~ 36 (39)
T cd00021 2 LCDEHGEEPLSLFCETDRALLCVDCDLSV-HSGHRR 36 (39)
T ss_pred CCCccCCcceEEEeCccChhhhhhcChhh-cCCCCE
Confidence 4888977 88888433555553 3333 888876
No 129
>PHA02862 5L protein; Provisional
Probab=42.56 E-value=14 Score=33.80 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccccccccccCceecCCCC-----ccccccHHhhhc---ccCCCCCCCCccC
Q 015757 225 SDPVTGNLMDDAMILPCGH-----SFGAAGVQHVIR---MKACYTCSRPVLE 268 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGH-----sFC~~CI~~~~~---~~~CPvCr~~~~~ 268 (401)
.|=||.+.-.+. .-||.. -..+.|+++|+. ...|+.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 588998876554 467652 235789999996 4589999988764
No 130
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=42.40 E-value=5.8 Score=33.58 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=14.9
Q ss_pred ccccccccc--cCceecCC--CCccccccHHhhhc-----ccCCCCCCCCcc
Q 015757 225 SDPVTGNLM--DDAMILPC--GHSFGAAGVQHVIR-----MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf--~dPVtLpC--GHsFC~~CI~~~~~-----~~~CPvCr~~~~ 267 (401)
.|+||...+ .++....| ||.|-+ |....+. .+.|++|+..+.
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPR-CALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp -------------SSEEE-TTS-EEEB--SSS-SBS-SS-EEE-TTT--EEE
T ss_pred cccccccccccCCcCEeECCCCCEEee-eeeeeeeeccCCeeEcCCCCCEEe
Confidence 699999854 57666666 798744 3333332 468999997654
No 131
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=42.30 E-value=6.7 Score=38.73 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=32.1
Q ss_pred ccccccccc-cccCc-ee---cC-CCCccccccHHhhhc--ccCCC--CCCCCcc
Q 015757 223 ILSDPVTGN-LMDDA-MI---LP-CGHSFGAAGVQHVIR--MKACY--TCSRPVL 267 (401)
Q Consensus 223 ~LsCPICle-lf~dP-Vt---Lp-CGHsFC~~CI~~~~~--~~~CP--vCr~~~~ 267 (401)
+-.||||.. .+-.| +. -| |=|..|-+|+-+.+. ...|| -|.+-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 347999975 44444 22 24 999999999999886 45799 7765444
No 132
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.97 E-value=11 Score=43.07 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.0
Q ss_pred cccccccccc-cccCc-eecCCCCccccccHHhhhc
Q 015757 222 AILSDPVTGN-LMDDA-MILPCGHSFGAAGVQHVIR 255 (401)
Q Consensus 222 e~LsCPICle-lf~dP-VtLpCGHsFC~~CI~~~~~ 255 (401)
..-+|.+|.. ++..| ++.+|||.|.+.||.+...
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3347999987 44556 4568999999999998763
No 133
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=10 Score=38.41 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCccccccHHhhhc--------------ccCCCCCCCCccCCC
Q 015757 241 CGHSFGAAGVQHVIR--------------MKACYTCSRPVLEDS 270 (401)
Q Consensus 241 CGHsFC~~CI~~~~~--------------~~~CPvCr~~~~~~~ 270 (401)
|....|++|+.+|.. ...||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 556778899999872 347999999887543
No 134
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.61 E-value=12 Score=30.97 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=31.8
Q ss_pred hccccchhhhhhhheeeeeecCCceeehhhhhhhHHHHHHHHHHhhhccCC
Q 015757 338 GNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDSS 388 (401)
Q Consensus 338 g~krt~e~f~~k~a~Ik~qclngwylvq~~~t~e~Ik~qf~~L~qfl~~ee 388 (401)
........+......|+. ++......|+.+|..|++||.+.+
T Consensus 18 ~~~~~~~~l~~~~~~l~~---------~~~~~~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 18 ELEDALKQLISIIQEVEE---------NAADVEAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666 788999999999999999999876
No 135
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=36.95 E-value=14 Score=28.42 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=16.6
Q ss_pred ccccccccccccccCc----eecCCCCccccccHHhhh
Q 015757 221 RAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 221 ~e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~~ 254 (401)
.+.-.|.+|...|.-- .--.||+.||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3455799999988421 112499999999986543
No 136
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=22 Score=33.67 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCchhhccccc
Q 015757 91 TDESDGEDDDVDDDEDDDDVDEAEK 115 (401)
Q Consensus 91 ~~~~~~~~~~d~~d~~d~~~~~~~~ 115 (401)
.+.+++||++|.|++||.+|+..+.
T Consensus 130 ~~~~~dEDdedvd~~dd~evdae~~ 154 (184)
T KOG4032|consen 130 GGSESDEDDEDVDEEDDEEVDAEDD 154 (184)
T ss_pred CCCcccccccccccchhhhhcccCC
Confidence 3444455555555555555555443
No 137
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.44 E-value=23 Score=23.95 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=7.2
Q ss_pred ccCCCCCCCC
Q 015757 256 MKACYTCSRP 265 (401)
Q Consensus 256 ~~~CPvCr~~ 265 (401)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4479999764
No 138
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.34 E-value=19 Score=23.45 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.3
Q ss_pred ccccccccc
Q 015757 225 SDPVTGNLM 233 (401)
Q Consensus 225 sCPIClelf 233 (401)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666644
No 139
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.03 E-value=23 Score=29.21 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=17.9
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++-.- ++.++ -|+--.|+.|.+--.+ .+.||.|+.++.
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 6999988653 33322 3787889999875443 678999997765
No 140
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.32 E-value=16 Score=37.10 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=28.7
Q ss_pred ccccccccccCceecC----CC--CccccccHHhhhc-ccCCCCCCCC
Q 015757 225 SDPVTGNLMDDAMILP----CG--HSFGAAGVQHVIR-MKACYTCSRP 265 (401)
Q Consensus 225 sCPIClelf~dPVtLp----CG--HsFC~~CI~~~~~-~~~CPvCr~~ 265 (401)
.||||+..-.-.++.. =| +.+|..|-..|-- -..||.|...
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 7999998765444322 33 5669999888764 3479999864
No 141
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=34.77 E-value=1.3e+02 Score=32.73 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=30.2
Q ss_pred cccccccceeeeccccccCCCCCccccCCCC---CCCCcccccCc
Q 015757 42 LTGFIDDKMFSVDRDRYFRPQPTMFTEHHPE---RRDPPQAREWS 83 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 83 (401)
++..+|...+..-|--||-|...+|-..++. +.--+++++=+
T Consensus 87 ~T~Ild~~~~~~c~G~~~~p~~d~~D~vvc~~c~~~v~S~~~~~h 131 (659)
T KOG4140|consen 87 DTTILDEEVMGLCRGDMFCPAHDDFDLVVCNDCNQVVKSQAFQSH 131 (659)
T ss_pred cceeccHhhhccccccccCCCCCcchhhhhhhhcccchhhhhccc
Confidence 4566777666777888999999999877744 55566776644
No 142
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=32.83 E-value=57 Score=37.56 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=32.2
Q ss_pred ccccccccccccc--Ccee--cCCCCccccccHHhhhc--------ccCCCCCC
Q 015757 222 AILSDPVTGNLMD--DAMI--LPCGHSFGAAGVQHVIR--------MKACYTCS 263 (401)
Q Consensus 222 e~LsCPIClelf~--dPVt--LpCGHsFC~~CI~~~~~--------~~~CPvCr 263 (401)
..+.|.||.+.+. .||= .+|=|.|-..||.+|-. ...||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 4567999999875 3332 13679999999999974 46899998
No 143
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.19 E-value=23 Score=36.05 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.6
Q ss_pred cccccccccccCceec---CCC--CccccccHHhhhc-ccCCCCCCC
Q 015757 224 LSDPVTGNLMDDAMIL---PCG--HSFGAAGVQHVIR-MKACYTCSR 264 (401)
Q Consensus 224 LsCPIClelf~dPVtL---pCG--HsFC~~CI~~~~~-~~~CPvCr~ 264 (401)
-.||||+..-.-.|+. .=| +.+|..|-..|-- -..||.|..
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4799999876544432 233 4569999888764 447999986
No 144
>PF15234 LAT: Linker for activation of T-cells
Probab=31.94 E-value=51 Score=31.50 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCCCccccCCCC-CCCCcccccCcCCCCCCCCCCCCCCCCCCCCCCCch
Q 015757 61 PQPTMFTEHHPE-RRDPPQAREWSGNATSPSTDESDGEDDDVDDDEDDD 108 (401)
Q Consensus 61 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~d~ 108 (401)
||++.=.+.|++ |++. ++-|= ..+=+.+|-.=||+|+||||||-
T Consensus 83 PQp~ggShrmpSSrqds-dgans---vasyeneep~ced~D~dedeedy 127 (230)
T PF15234_consen 83 PQPPGGSHRMPSSRQDS-DGANS---VASYENEEPACEDADEDEDEEDY 127 (230)
T ss_pred CCCCCCcccCcccccCC-Ccccc---cccccccccccCccccccccccc
Confidence 677666666766 4443 33211 11234444444555555544443
No 145
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.63 E-value=30 Score=38.63 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=6.4
Q ss_pred ccCCCCCCCCcc
Q 015757 256 MKACYTCSRPVL 267 (401)
Q Consensus 256 ~~~CPvCr~~~~ 267 (401)
.+.||.|+..+.
T Consensus 41 ~~fC~~CG~~~~ 52 (645)
T PRK14559 41 EAHCPNCGAETG 52 (645)
T ss_pred cccccccCCccc
Confidence 345666665543
No 146
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=31.13 E-value=34 Score=35.33 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 015757 92 DESDGEDDDV 101 (401)
Q Consensus 92 ~~~~~~~~~d 101 (401)
|||++||+++
T Consensus 261 eE~e~Eee~~ 270 (348)
T KOG2652|consen 261 EEDENEEEDD 270 (348)
T ss_pred cccccccccc
Confidence 3344444333
No 147
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=31.03 E-value=27 Score=29.50 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=27.4
Q ss_pred ccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 225 SDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
.|-||......+ ||.||..|-.+ ...|..|+..+.
T Consensus 46 ~C~~CK~~v~q~-----g~~YCq~CAYk---kGiCamCGKki~ 80 (90)
T PF10235_consen 46 KCKICKTKVHQP-----GAKYCQTCAYK---KGICAMCGKKIL 80 (90)
T ss_pred cccccccccccC-----CCccChhhhcc---cCcccccCCeec
Confidence 599998766654 88999999654 447999998863
No 148
>COG4058 McrA Methyl coenzyme M reductase, alpha subunit [Coenzyme metabolism]
Probab=30.93 E-value=13 Score=38.70 Aligned_cols=21 Identities=33% Similarity=0.811 Sum_probs=18.1
Q ss_pred cCCceeehhhhhhhHHHHHHH
Q 015757 358 LNGWYVVKTLDNAESVKLQYR 378 (401)
Q Consensus 358 lngwylvq~~~t~e~Ik~qf~ 378 (401)
||||||.|++|.+-.-|+-|-
T Consensus 427 lngwyls~~lhke~~~rlgfy 447 (553)
T COG4058 427 LNGWYLSQILHKEAHSRLGFY 447 (553)
T ss_pred cchhHHHHHHHHHHhhccccc
Confidence 699999999999888877664
No 149
>PLN02436 cellulose synthase A
Probab=30.77 E-value=35 Score=40.14 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=31.6
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++..- +|-+. -|+--.|+.|.+--.+ ...||.|+.++.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999988753 33322 3888889999964443 678999998876
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=27 Score=36.43 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=26.5
Q ss_pred ccccccccccc-----CceecCCCCccccccHHhhhc-ccCCCCC
Q 015757 224 LSDPVTGNLMD-----DAMILPCGHSFGAAGVQHVIR-MKACYTC 262 (401)
Q Consensus 224 LsCPIClelf~-----dPVtLpCGHsFC~~CI~~~~~-~~~CPvC 262 (401)
..||+|.-.+. ..++-.|||-||..|...|.. ...|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 46999976542 345556999999999988765 3344443
No 151
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.61 E-value=45 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=28.8
Q ss_pred cccccccccc----CceecCCCCccccccHHhhhcccCCCCCCCCccCC
Q 015757 225 SDPVTGNLMD----DAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (401)
Q Consensus 225 sCPIClelf~----dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~ 269 (401)
.|-.|..-+. ++.+-+=-.+||..|....+ ...||-|+..+..+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l-~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML-NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh-cCcCcCCCCccccC
Confidence 4666655442 23333333589999999877 45799999876544
No 152
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.60 E-value=29 Score=29.99 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=7.9
Q ss_pred ccccccccccC
Q 015757 225 SDPVTGNLMDD 235 (401)
Q Consensus 225 sCPIClelf~d 235 (401)
.||-|+.-|.+
T Consensus 11 ~Cp~CG~kFYD 21 (108)
T PF09538_consen 11 TCPSCGAKFYD 21 (108)
T ss_pred cCCCCcchhcc
Confidence 68888776654
No 153
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.59 E-value=12 Score=36.91 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=33.2
Q ss_pred ccccccccccc------CceecC--------CCCccccccHHhhhc--ccCCCCCCCC
Q 015757 224 LSDPVTGNLMD------DAMILP--------CGHSFGAAGVQHVIR--MKACYTCSRP 265 (401)
Q Consensus 224 LsCPIClelf~------dPVtLp--------CGHsFC~~CI~~~~~--~~~CPvCr~~ 265 (401)
..|.||...+. -|.++. |||+.|..|+...+. ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 35889977665 467777 999999999998875 4579999864
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.30 E-value=38 Score=34.80 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=31.9
Q ss_pred ccccccccc--cCceec--CCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 225 SDPVTGNLM--DDAMIL--PCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf--~dPVtL--pCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
+||||.+.+ .+-..+ +||+..|..|+..... ...||.|+.+..
T Consensus 251 s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 699999866 333334 5888888888877665 568999996654
No 156
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.11 E-value=68 Score=35.11 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=8.1
Q ss_pred CChhHHHHHhhhcC
Q 015757 179 ADSDVYYSQYLQQG 192 (401)
Q Consensus 179 ~D~~~yys~~l~~~ 192 (401)
..+++|..-+..++
T Consensus 252 ~KGDQYI~Dm~nTK 265 (641)
T KOG0772|consen 252 SKGDQYIRDMYNTK 265 (641)
T ss_pred eccchhhhhhhccC
Confidence 55666666555544
No 157
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.89 E-value=23 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=8.7
Q ss_pred ccccccHHhhhc
Q 015757 244 SFGAAGVQHVIR 255 (401)
Q Consensus 244 sFC~~CI~~~~~ 255 (401)
.||+.||.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 158
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=26.24 E-value=32 Score=36.34 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=24.6
Q ss_pred cccccccccccccCceecC--CCCccccccHHhh
Q 015757 222 AILSDPVTGNLMDDAMILP--CGHSFGAAGVQHV 253 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLp--CGHsFC~~CI~~~ 253 (401)
....||||+-++-....+. |..+.|..|+...
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 4457999998887655554 8999999998754
No 159
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.04 E-value=41 Score=28.82 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.6
Q ss_pred CCccccccHHhhhc----------ccCCCCCCCC
Q 015757 242 GHSFGAAGVQHVIR----------MKACYTCSRP 265 (401)
Q Consensus 242 GHsFC~~CI~~~~~----------~~~CPvCr~~ 265 (401)
.-.||..||..... ...||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 67899999987763 3579999864
No 160
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.72 E-value=37 Score=38.13 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.2
Q ss_pred hhhHHHHHHH
Q 015757 369 NAESVKLQYR 378 (401)
Q Consensus 369 t~e~Ik~qf~ 378 (401)
+.+.|.+|.+
T Consensus 303 ~R~al~eql~ 312 (735)
T PF04615_consen 303 ARQALQEQLR 312 (735)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 161
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=25.71 E-value=55 Score=25.11 Aligned_cols=28 Identities=25% Similarity=0.620 Sum_probs=21.6
Q ss_pred ccccccccc--cCceec-C-CCCccccccHHh
Q 015757 225 SDPVTGNLM--DDAMIL-P-CGHSFGAAGVQH 252 (401)
Q Consensus 225 sCPIClelf--~dPVtL-p-CGHsFC~~CI~~ 252 (401)
.|++|.+.| .+.++. + ||-.|-+.|..+
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 599999999 555544 4 998888888755
No 162
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=25.42 E-value=42 Score=33.40 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=23.6
Q ss_pred ccCcCCCCCCCCCCCCCCCCCCCCCCCchhhcccc
Q 015757 80 REWSGNATSPSTDESDGEDDDVDDDEDDDDVDEAE 114 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~d~~d~~~~~~~ 114 (401)
.+|+ +.++.++|+++||+++..+||..+|+.+.
T Consensus 38 ~~~s--a~g~~de~d~g~d~e~~~ee~~~~vdn~d 70 (270)
T KOG4363|consen 38 DPFS--AKGTGDEEDYGEDEEWPNEEEEGEVDNGD 70 (270)
T ss_pred Cccc--ccCCchhhhcCCccccCChhhccccccCc
Confidence 4565 55677888888888877777777776643
No 163
>PLN02189 cellulose synthase
Probab=25.26 E-value=49 Score=38.87 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=31.3
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++... +|.+. .|+--.|+.|.+--.+ ...||.|+.++.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999998754 23222 3777789999964443 678999998876
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.26 E-value=51 Score=38.89 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=31.2
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++... +|-+. .||--.|+.|.+=-.+ ...||.|+.++.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 6999988653 33332 4888889999953232 679999998876
No 165
>smart00336 BBOX B-Box-type zinc finger.
Probab=24.73 E-value=31 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=20.8
Q ss_pred hhHHhhh-hhcccccCcCCCCcc---cCCCCCCCccc
Q 015757 294 RTCKRKR-EKFDQDKGSYGDSTV---MDPPRGRGVQF 326 (401)
Q Consensus 294 ~~Ck~H~-E~Lel~kc~~~e~~~---~~s~~hk~hqf 326 (401)
..|..|. +++.+|+..+...+| ... .|++|+.
T Consensus 4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~-~H~~H~~ 39 (42)
T smart00336 4 PKCDSHGDEPAEFFCEECGALLCRTCDEA-EHRGHTV 39 (42)
T ss_pred CcCCCCCCCceEEECCCCCcccccccChh-hcCCCce
Confidence 4689998 888888333444443 333 6888876
No 166
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.35 E-value=48 Score=34.14 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=19.8
Q ss_pred cCCCCccccccHHhhhc-----------ccCCCCCCCCccC
Q 015757 239 LPCGHSFGAAGVQHVIR-----------MKACYTCSRPVLE 268 (401)
Q Consensus 239 LpCGHsFC~~CI~~~~~-----------~~~CPvCr~~~~~ 268 (401)
.|||| .|..=-.++|. ...||.|...+.-
T Consensus 376 ~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 376 NPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 47999 46666666773 3479999776653
No 167
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=1e+02 Score=34.80 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=55.9
Q ss_pred ccccccccccccccccCceecC-CCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
..++.|..|+-..+++|||.|| -+-+.-++-|..++- ..+=|.=|.++...+..||-.|+.-+..+....
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 3567889999999999999999 456777777776653 446788889999999999999988887765543
No 168
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=23.63 E-value=44 Score=32.97 Aligned_cols=15 Identities=7% Similarity=-0.173 Sum_probs=11.2
Q ss_pred cccccccccccccCc
Q 015757 222 AILSDPVTGNLMDDA 236 (401)
Q Consensus 222 e~LsCPIClelf~dP 236 (401)
-.|.|+||+.+|..|
T Consensus 259 ~GfvCsVCLsvfc~p 273 (296)
T COG5242 259 LGFVCSVCLSVFCRP 273 (296)
T ss_pred EeeehhhhheeecCC
Confidence 346789998888665
No 169
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=23.62 E-value=27 Score=39.90 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC-CCCchhhccccc
Q 015757 89 PSTDESDGEDDDVDD-DEDDDDVDEAEK 115 (401)
Q Consensus 89 ~~~~~~~~~~~~d~~-d~~d~~~~~~~~ 115 (401)
+++|++||||||+|+ |.++.+.+.+++
T Consensus 677 ~e~Es~EDEdDe~D~fDL~~~seSe~eD 704 (787)
T PF03115_consen 677 SEDESDEDEDDELDRFDLHPSSESEDED 704 (787)
T ss_dssp ----------------------------
T ss_pred CCCCccccccccccccccCccccccccc
No 170
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=23.55 E-value=36 Score=34.28 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.4
Q ss_pred ccCCCCCCCCccCC
Q 015757 256 MKACYTCSRPVLED 269 (401)
Q Consensus 256 ~~~CPvCr~~~~~~ 269 (401)
...|+.|...+...
T Consensus 287 ~PiC~~C~s~F~~t 300 (314)
T KOG2487|consen 287 VPICKTCKSKFSFT 300 (314)
T ss_pred CCccchhhhhcccc
Confidence 34688888777533
No 171
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.35 E-value=32 Score=25.39 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.3
Q ss_pred CCCCccccccHHhhh
Q 015757 240 PCGHSFGAAGVQHVI 254 (401)
Q Consensus 240 pCGHsFC~~CI~~~~ 254 (401)
.||+.||..|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 589999999987753
No 172
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.11 E-value=51 Score=33.09 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 015757 258 ACYTCSR 264 (401)
Q Consensus 258 ~CPvCr~ 264 (401)
.||+|+.
T Consensus 271 ~C~~Cgt 277 (279)
T TIGR00627 271 ICKTCKT 277 (279)
T ss_pred CCCCCCC
Confidence 4555554
No 173
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.95 E-value=51 Score=22.59 Aligned_cols=9 Identities=33% Similarity=1.017 Sum_probs=6.6
Q ss_pred cCCCCCCCC
Q 015757 257 KACYTCSRP 265 (401)
Q Consensus 257 ~~CPvCr~~ 265 (401)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 368998765
No 174
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=22.90 E-value=48 Score=30.88 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=16.2
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCC
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRP 265 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~ 265 (401)
...|++|+-+..+. . ...||+|+.+
T Consensus 134 ~~vC~vCGy~~~ge--~----------------P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--A----------------PEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--C----------------CCcCCCCCCh
Confidence 46798886555441 1 3479999865
No 175
>PLN02400 cellulose synthase
Probab=22.16 E-value=54 Score=38.69 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=31.1
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++-.- +|-+. .|+--.|+.|.+--.+ ...||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 6999988653 33322 4888889999963222 678999998876
No 176
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.07 E-value=48 Score=32.16 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=15.8
Q ss_pred ccccccccccc-CceecC--CCCccc
Q 015757 224 LSDPVTGNLMD-DAMILP--CGHSFG 246 (401)
Q Consensus 224 LsCPIClelf~-dPVtLp--CGHsFC 246 (401)
|.||+|...|. .+-.+- .||+|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 68999999775 233344 478883
No 177
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.07 E-value=28 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.6
Q ss_pred cccc--cccccc-----Cc--eecC-CCCccccccHHhh
Q 015757 225 SDPV--TGNLMD-----DA--MILP-CGHSFGAAGVQHV 253 (401)
Q Consensus 225 sCPI--Clelf~-----dP--VtLp-CGHsFC~~CI~~~ 253 (401)
.||- |..++. .. |+=+ |++.||..|...|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 6877 877664 12 3444 9999999998765
No 178
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.78 E-value=72 Score=37.52 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=30.6
Q ss_pred cccccccccccccCceecCCCC-----ccccccHHhhhcccCCCCCCCCccC
Q 015757 222 AILSDPVTGNLMDDAMILPCGH-----SFGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGH-----sFC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
....||-|.........-.||. .||..|-...- ...||.|......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~-~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVE-EDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCC-CCcCCCCCCCCCc
Confidence 3457999988764444445874 58999943321 3569999987663
No 179
>PLN02195 cellulose synthase A
Probab=21.28 E-value=73 Score=37.28 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=31.5
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++... +|-+. .|+--.|+.|.+=-.+ +..||.|+.++.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5999988553 34332 4888899999953222 678999999887
No 180
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=21.02 E-value=45 Score=37.97 Aligned_cols=24 Identities=17% Similarity=0.565 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCC
Q 015757 83 SGNATSPSTDESDGEDDDVDDDED 106 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~d~~d~~ 106 (401)
.++++-..+|.++.+++||+||+|
T Consensus 886 ~~~~~~d~dE~e~~~~dEd~d~~e 909 (911)
T PF05086_consen 886 QSNGDEDTDEDEDQDEDEDEDEDE 909 (911)
T ss_pred HhcCCccccccccccccccccccc
Confidence 444454444444433333433333
No 181
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.01 E-value=48 Score=24.25 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=20.7
Q ss_pred ccccccccccC----ceecCCCCccccccHHhhh
Q 015757 225 SDPVTGNLMDD----AMILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 225 sCPIClelf~d----PVtLpCGHsFC~~CI~~~~ 254 (401)
.|++|...|.- .--..||+.||..|.....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 58888776543 2223599999999987543
No 182
>PF15616 TerY-C: TerY-C metal binding domain
Probab=20.63 E-value=48 Score=29.78 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=31.7
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
|.....||-|...+--.+- .||+.||..--. ...||-|.....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g~~----~~~CPwCg~~g~ 116 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDGEG----EVTCPWCGNEGS 116 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCCCC----CEECCCCCCeee
Confidence 3344689999998876665 899999965421 458999987754
No 183
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=61 Score=36.39 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=34.3
Q ss_pred ccccccccccCceecCCCC-ccccccHHhhhc-------ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMDDAMILPCGH-SFGAAGVQHVIR-------MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~dPVtLpCGH-sFC~~CI~~~~~-------~~~CPvCr~~~~ 267 (401)
.|+||-.-..-+..-+||| -.|..|..+... ...||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 4999988888777788999 889999988764 345799987543
No 184
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.27 E-value=72 Score=37.58 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=31.4
Q ss_pred cccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|.||++-.. +|-+. .|+--.|+.|.+--.+ ...||.|+.++.
T Consensus 17 ~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 17 TCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred hhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 6999988653 34332 4888899999953333 678999998876
Done!