Query 015757
Match_columns 401
No_of_seqs 309 out of 1404
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:09:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 99.6 5.5E-16 1.9E-20 125.1 6.4 70 219-288 10-80 (85)
2 2kre_A Ubiquitin conjugation f 99.6 1.2E-15 4.2E-20 127.0 5.4 69 219-287 25-94 (100)
3 1wgm_A Ubiquitin conjugation f 99.6 2.5E-15 8.4E-20 124.7 6.7 70 219-288 18-89 (98)
4 1jm7_B BARD1, BRCA1-associated 99.6 1.6E-15 5.6E-20 128.3 5.6 88 218-306 17-108 (117)
5 1t1h_A Gspef-atpub14, armadill 99.6 1.1E-15 3.7E-20 119.7 4.1 68 220-287 5-74 (78)
6 3ztg_A E3 ubiquitin-protein li 99.6 3.7E-15 1.3E-19 120.2 6.8 71 218-288 8-83 (92)
7 2yu4_A E3 SUMO-protein ligase 99.5 9.4E-15 3.2E-19 119.7 3.6 68 220-287 4-82 (94)
8 3fl2_A E3 ubiquitin-protein li 99.5 2.6E-14 9E-19 121.7 5.1 69 218-286 47-118 (124)
9 2c2l_A CHIP, carboxy terminus 99.5 2.2E-14 7.5E-19 135.4 5.0 66 221-286 206-273 (281)
10 2y43_A E3 ubiquitin-protein li 99.4 3.9E-14 1.3E-18 116.0 4.4 72 218-289 17-90 (99)
11 2f42_A STIP1 homology and U-bo 99.4 4.9E-14 1.7E-18 129.1 5.3 68 219-286 102-171 (179)
12 2egp_A Tripartite motif-contai 99.4 6.4E-15 2.2E-19 115.1 -2.0 65 216-280 5-77 (79)
13 3lrq_A E3 ubiquitin-protein li 99.4 4.6E-14 1.6E-18 116.5 2.5 72 217-288 16-90 (100)
14 4ayc_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 120.3 4.0 86 219-306 49-138 (138)
15 1z6u_A NP95-like ring finger p 99.4 1.6E-13 5.6E-18 121.7 5.1 68 219-286 74-144 (150)
16 2ckl_A Polycomb group ring fin 99.4 2.2E-13 7.5E-18 113.3 4.2 68 219-286 11-84 (108)
17 2csy_A Zinc finger protein 183 99.4 5.7E-13 2E-17 105.2 6.0 59 218-277 10-69 (81)
18 2ckl_B Ubiquitin ligase protei 99.4 1.4E-13 4.6E-18 122.7 2.6 82 217-303 48-133 (165)
19 2djb_A Polycomb group ring fin 99.3 8.1E-13 2.8E-17 102.2 5.8 57 218-274 10-68 (72)
20 1jm7_A BRCA1, breast cancer ty 99.3 2.7E-13 9.1E-18 112.5 2.9 69 219-287 17-89 (112)
21 2ecw_A Tripartite motif-contai 99.3 1.2E-13 4.3E-18 108.4 0.5 63 218-280 14-83 (85)
22 2ecv_A Tripartite motif-contai 99.3 1.4E-13 4.9E-18 108.0 0.7 63 218-280 14-83 (85)
23 3l11_A E3 ubiquitin-protein li 99.3 6.9E-13 2.4E-17 111.3 4.4 69 219-287 11-88 (115)
24 3hct_A TNF receptor-associated 99.3 9.8E-13 3.3E-17 111.3 4.2 66 217-282 12-79 (118)
25 2yur_A Retinoblastoma-binding 99.3 2.3E-12 7.9E-17 100.4 6.0 51 218-268 10-64 (74)
26 2ecy_A TNF receptor-associated 99.3 1.8E-12 6.2E-17 98.5 5.0 54 218-271 10-65 (66)
27 2ysl_A Tripartite motif-contai 99.2 5.8E-12 2E-16 96.9 5.4 54 218-271 15-72 (73)
28 3htk_C E3 SUMO-protein ligase 99.2 2.7E-12 9.1E-17 123.8 3.9 69 219-287 177-251 (267)
29 2d8t_A Dactylidin, ring finger 99.2 8.2E-12 2.8E-16 96.3 4.0 49 220-268 12-61 (71)
30 2ea6_A Ring finger protein 4; 99.2 1.1E-11 3.8E-16 93.8 3.6 51 218-268 10-68 (69)
31 3hcs_A TNF receptor-associated 99.2 9.7E-12 3.3E-16 111.1 3.6 66 218-283 13-80 (170)
32 1rmd_A RAG1; V(D)J recombinati 99.2 1.2E-11 4E-16 104.0 3.7 62 218-279 18-82 (116)
33 3ng2_A RNF4, snurf, ring finge 99.2 8E-12 2.7E-16 95.5 2.3 54 221-274 8-69 (71)
34 2ect_A Ring finger protein 126 99.2 3.2E-11 1.1E-15 94.2 5.7 57 218-274 10-70 (78)
35 2ct2_A Tripartite motif protei 99.2 2.8E-11 9.5E-16 96.0 5.3 52 218-269 10-69 (88)
36 2ysj_A Tripartite motif-contai 99.2 2.3E-11 7.7E-16 91.4 4.5 45 218-262 15-63 (63)
37 1g25_A CDK-activating kinase a 99.1 1.4E-11 4.7E-16 93.3 2.9 53 222-274 2-61 (65)
38 2ecj_A Tripartite motif-contai 99.1 3E-11 1E-15 88.7 4.1 46 217-262 9-58 (58)
39 3knv_A TNF receptor-associated 99.1 6.3E-12 2.1E-16 110.4 0.4 51 217-267 25-77 (141)
40 2xeu_A Ring finger protein 4; 99.1 1.6E-11 5.6E-16 91.6 1.0 52 222-273 2-61 (64)
41 1e4u_A Transcriptional repress 99.1 8.7E-11 3E-15 93.6 4.5 53 219-271 7-65 (78)
42 1bor_A Transcription factor PM 99.1 5.9E-11 2E-15 88.1 3.0 47 221-269 4-50 (56)
43 2ecn_A Ring finger protein 141 99.0 6.7E-11 2.3E-15 90.5 2.0 51 218-269 10-61 (70)
44 1chc_A Equine herpes virus-1 r 99.0 2.7E-10 9.4E-15 86.4 3.6 46 222-267 4-51 (68)
45 1iym_A EL5; ring-H2 finger, ub 99.0 3.6E-10 1.2E-14 82.3 4.0 47 221-267 3-54 (55)
46 2ecm_A Ring finger and CHY zin 99.0 3.6E-10 1.2E-14 82.1 3.7 46 222-267 4-54 (55)
47 4ap4_A E3 ubiquitin ligase RNF 98.9 1.9E-10 6.5E-15 97.0 1.9 53 221-273 5-65 (133)
48 2ep4_A Ring finger protein 24; 98.9 7.3E-10 2.5E-14 85.5 4.6 49 220-268 12-64 (74)
49 2kiz_A E3 ubiquitin-protein li 98.9 8.4E-10 2.9E-14 84.1 4.8 49 221-269 12-64 (69)
50 2l0b_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 90.5 3.4 48 221-268 38-89 (91)
51 1x4j_A Ring finger protein 38; 98.9 5.7E-10 1.9E-14 86.6 3.3 48 221-268 21-72 (75)
52 2bay_A PRE-mRNA splicing facto 98.9 4.4E-10 1.5E-14 85.6 1.9 53 223-275 3-57 (61)
53 4ic3_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 87.6 2.1 47 219-268 20-67 (74)
54 1v87_A Deltex protein 2; ring- 98.8 2E-09 7E-14 89.6 3.2 45 224-268 26-94 (114)
55 2ecg_A Baculoviral IAP repeat- 98.8 2.1E-09 7.3E-14 83.9 2.5 47 219-268 21-68 (75)
56 4ap4_A E3 ubiquitin ligase RNF 98.7 1.5E-09 5.2E-14 91.4 0.1 53 221-273 70-130 (133)
57 2ecl_A Ring-box protein 2; RNF 98.7 1E-08 3.6E-13 81.3 4.2 48 221-268 13-76 (81)
58 2y1n_A E3 ubiquitin-protein li 98.6 1.2E-08 4.1E-13 103.4 3.5 47 222-268 331-379 (389)
59 2ea5_A Cell growth regulator w 98.6 3.5E-08 1.2E-12 76.3 5.2 45 221-268 13-58 (68)
60 2yho_A E3 ubiquitin-protein li 98.6 1.2E-08 4.2E-13 81.0 1.7 46 220-268 15-61 (79)
61 1wim_A KIAA0161 protein; ring 98.5 9.4E-09 3.2E-13 83.4 0.3 44 222-265 4-61 (94)
62 2vje_A E3 ubiquitin-protein li 98.5 2.5E-08 8.4E-13 76.0 2.2 46 222-267 7-56 (64)
63 2vje_B MDM4 protein; proto-onc 98.5 2.8E-08 9.7E-13 75.4 2.3 46 222-267 6-55 (63)
64 3t6p_A Baculoviral IAP repeat- 98.5 3E-08 1E-12 99.0 2.9 47 219-268 291-338 (345)
65 3dpl_R Ring-box protein 1; ubi 98.4 1.4E-07 4.8E-12 79.2 3.5 46 222-267 36-100 (106)
66 2d8s_A Cellular modulator of i 98.1 3.3E-06 1.1E-10 67.4 5.8 48 222-269 14-71 (80)
67 4a0k_B E3 ubiquitin-protein li 98.0 6.4E-07 2.2E-11 76.7 0.1 46 222-267 47-111 (117)
68 2jun_A Midline-1; B-BOX, TRIM, 97.9 2.2E-06 7.6E-11 69.9 1.6 90 222-328 2-99 (101)
69 3m62_A Ubiquitin conjugation f 97.9 1E-05 3.6E-10 89.7 5.5 70 219-288 887-958 (968)
70 2ct0_A Non-SMC element 1 homol 97.5 9.7E-05 3.3E-09 58.3 5.4 46 222-267 14-63 (74)
71 1vyx_A ORF K3, K3RING; zinc-bi 96.8 0.00079 2.7E-08 50.7 3.2 45 223-267 6-58 (60)
72 3vk6_A E3 ubiquitin-protein li 96.6 0.00086 2.9E-08 55.9 2.7 43 225-267 3-48 (101)
73 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.00085 2.9E-08 67.2 2.3 45 223-267 308-372 (381)
74 3nw0_A Non-structural maintena 92.3 0.095 3.3E-06 49.5 4.0 47 223-269 180-230 (238)
75 3i2d_A E3 SUMO-protein ligase 90.5 0.15 5E-06 51.4 3.4 61 220-281 246-313 (371)
76 1fre_A Nuclear factor XNF7; zi 89.9 0.095 3.3E-06 35.7 1.1 36 293-328 3-42 (42)
77 4fo9_A E3 SUMO-protein ligase 89.0 0.23 7.8E-06 49.8 3.4 61 220-281 212-279 (360)
78 2cs3_A Protein C14ORF4, MY039 83.3 1.1 3.6E-05 36.1 3.8 35 221-255 13-51 (93)
79 2did_A Tripartite motif protei 81.7 0.34 1.2E-05 34.6 0.4 36 294-329 9-48 (53)
80 2yrg_A Tripartite motif-contai 78.9 0.46 1.6E-05 35.0 0.4 36 294-329 15-54 (59)
81 2dja_A Midline-2; tripartite m 74.1 0.34 1.2E-05 37.7 -1.6 36 294-329 19-59 (84)
82 2ko5_A Ring finger protein Z; 73.6 1.6 5.5E-05 35.9 2.2 46 222-269 27-74 (99)
83 2d8u_A Ubiquitin ligase TRIM63 73.6 0.74 2.5E-05 33.9 0.2 36 294-329 9-49 (64)
84 3ddt_A E3 ubiquitin-protein li 69.7 0.42 1.4E-05 33.5 -1.8 35 294-328 7-46 (48)
85 2egm_A Tripartite motif-contai 64.6 0.34 1.1E-05 35.6 -3.4 33 294-326 19-54 (57)
86 2csv_A Tripartite motif protei 58.6 1.5 5E-05 33.2 -0.8 35 294-329 19-57 (72)
87 1weo_A Cellulose synthase, cat 53.2 11 0.00036 30.8 3.4 44 224-267 17-69 (93)
88 2jne_A Hypothetical protein YF 52.6 2.2 7.5E-05 35.3 -0.8 40 224-267 33-72 (101)
89 2yvr_A Transcription intermedi 49.4 2.1 7.3E-05 29.9 -1.1 35 294-329 7-46 (50)
90 1y02_A CARP2, FYVE-ring finger 46.8 2.6 9E-05 35.8 -1.2 43 222-264 18-65 (120)
91 1x4u_A Zinc finger, FYVE domai 46.1 11 0.00037 29.5 2.4 38 216-253 7-48 (84)
92 1wd2_A Ariadne-1 protein homol 45.5 4.4 0.00015 30.2 -0.0 31 225-255 8-46 (60)
93 3mjh_B Early endosome antigen 45.4 3.6 0.00012 27.6 -0.4 16 222-237 4-19 (34)
94 1joc_A EEA1, early endosomal a 42.7 11 0.00037 31.9 2.0 37 217-253 63-103 (125)
95 2ct7_A Ring finger protein 31; 40.7 7.7 0.00026 30.4 0.7 29 225-253 27-61 (86)
96 3t7l_A Zinc finger FYVE domain 37.5 22 0.00076 28.1 3.0 34 221-254 18-55 (90)
97 2ayu_A Nucleosome assembly pro 37.1 7.1 0.00024 39.7 0.0 6 54-59 308-313 (417)
98 3mpx_A FYVE, rhogef and PH dom 36.2 7.5 0.00026 38.4 0.0 34 221-254 373-410 (434)
99 2jmo_A Parkin; IBR, E3 ligase, 36.1 12 0.0004 29.1 1.1 20 240-260 55-74 (80)
100 2jrp_A Putative cytoplasmic pr 35.8 6.2 0.00021 31.5 -0.6 40 224-267 3-42 (81)
101 2gmg_A Hypothetical protein PF 35.6 13 0.00044 31.0 1.3 29 233-265 65-93 (105)
102 2xqn_T Testin, TESS; metal-bin 35.4 18 0.00061 29.5 2.2 46 222-268 29-75 (126)
103 2yw8_A RUN and FYVE domain-con 35.2 16 0.00056 28.4 1.8 33 221-253 17-53 (82)
104 1m3v_A FLIN4, fusion of the LI 35.1 15 0.00052 30.1 1.7 48 222-269 31-82 (122)
105 1z2q_A LM5-1; membrane protein 34.5 17 0.00059 28.4 1.8 38 216-253 14-55 (84)
106 2fiy_A Protein FDHE homolog; F 32.5 10 0.00035 37.0 0.2 43 223-265 182-231 (309)
107 1wfk_A Zinc finger, FYVE domai 31.5 19 0.00065 28.6 1.7 31 223-253 9-43 (88)
108 3bbo_G Ribosomal protein L4; l 31.4 10 0.00034 36.9 0.0 12 35-46 183-194 (293)
109 1rut_X Flinc4, fusion protein 31.0 12 0.00042 33.0 0.5 48 221-268 30-81 (188)
110 1wil_A KIAA1045 protein; ring 28.6 58 0.002 26.2 4.0 31 222-253 14-47 (89)
111 1z60_A TFIIH basal transcripti 26.9 34 0.0012 25.5 2.3 38 225-262 17-58 (59)
112 2rgt_A Fusion of LIM/homeobox 26.4 42 0.0014 28.9 3.1 47 221-268 31-77 (169)
113 1dvp_A HRS, hepatocyte growth 25.3 22 0.00075 32.4 1.1 31 223-253 161-195 (220)
114 2cup_A Skeletal muscle LIM-pro 24.8 28 0.00097 27.0 1.6 46 222-268 32-78 (101)
115 2jtn_A LIM domain-binding prot 24.7 44 0.0015 29.1 3.0 47 222-269 86-132 (182)
116 1vfy_A Phosphatidylinositol-3- 24.6 29 0.001 26.3 1.6 29 225-253 13-45 (73)
117 1x62_A C-terminal LIM domain p 24.4 71 0.0024 23.7 3.7 38 223-267 15-52 (79)
118 2xjy_A Rhombotin-2; oncoprotei 23.6 33 0.0011 28.0 1.8 48 221-268 27-78 (131)
119 2epr_A POZ-, at HOOK-, and zin 22.9 60 0.0021 21.0 2.8 16 221-236 10-25 (48)
120 3fyb_A Protein of unknown func 22.7 22 0.00076 29.4 0.5 12 244-255 41-52 (104)
121 2o35_A Hypothetical protein DU 22.7 22 0.00076 29.4 0.5 12 244-255 42-53 (105)
122 2lv9_A Histone-lysine N-methyl 22.6 1.1E+02 0.0036 24.5 4.7 41 223-264 28-75 (98)
123 2lri_C Autoimmune regulator; Z 21.8 97 0.0033 23.1 4.0 40 224-265 13-59 (66)
124 1iml_A CRIP, cysteine rich int 20.8 70 0.0024 23.5 3.0 44 222-266 26-71 (76)
125 2eps_A POZ-, at HOOK-, and zin 20.3 97 0.0033 20.6 3.5 36 221-267 10-52 (54)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.61 E-value=5.5e-16 Score=125.11 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=64.3
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
.+.+.|.||||+++|+|||+++|||+||+.||.+||. ...||+|+.++....+.+|..|+++++.++...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999997 678999999999899999999999999887654
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.57 E-value=1.2e-15 Score=127.00 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=63.6
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
.+.+.|.||||+++|.|||+++|||+||+.||.+||. ...||+|+.++....+.+|..|+++++.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999997 66899999999999999999999999888654
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.57 E-value=2.5e-15 Score=124.74 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=64.0
Q ss_pred ccccccccccccccccCceecCCC-CccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCG-HsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
.+.+.|.||||+++|+|||+++|| |+||+.||.+||. ...||+|+.++....+.+|..|+++++.++...
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 456789999999999999999999 9999999999997 668999999999999999999999998886644
No 4
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.57 E-value=1.6e-15 Score=128.26 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=66.8
Q ss_pred cccccccccccccccccCceec-CCCCccccccHHhhhcccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHHH---hhh
Q 015757 218 DSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEEL---QFY 293 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~~---~~~ 293 (401)
..+.+.+.||||+++|.+||++ +|||+||..||..|+. ..||+|+..+....+.+|..|..+++.++..... ...
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~~~~~~~~ 95 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLLHDNEL 95 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCccccccccHHHHHHHHHHHHHHHHHhhccc
Confidence 3456789999999999999999 9999999999999986 7899999999888999999999999988776644 123
Q ss_pred hhHHhhhhhcccc
Q 015757 294 RTCKRKREKFDQD 306 (401)
Q Consensus 294 ~~Ck~H~E~Lel~ 306 (401)
..|..|.+.+.+|
T Consensus 96 ~~c~~h~~~~~lf 108 (117)
T 1jm7_B 96 SDLKEDKPRKSLF 108 (117)
T ss_dssp CC-----------
T ss_pred cccccccccCccc
Confidence 4688898888777
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.57 E-value=1.1e-15 Score=119.75 Aligned_cols=68 Identities=19% Similarity=0.451 Sum_probs=62.1
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
+.+.+.||||+++|.+||+++|||+||+.||.+|+. ...||+|+..+....+.+|..|+++++.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999997 45899999999988999999999999888653
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=120.23 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=62.9
Q ss_pred cccccccccccccccccCceecC-CCCccccccHHhhhc---ccCCCCCCCCc-cCCCCCccHHHHHHHHHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPV-LEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~---~~~CPvCr~~~-~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
..+.+.+.||||+++|.+||+++ |||+||+.||..|+. ...||+||..+ ....+.+|..|+.+++.++...
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 45578899999999999999999 999999999999995 35899999997 5678899999999999887754
No 7
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.4e-15 Score=119.73 Aligned_cols=68 Identities=19% Similarity=0.421 Sum_probs=60.1
Q ss_pred cccccccccccccccCceecC-CCCccccccHHhhhcc-------cCCCC--CCCC-ccCCCCCccHHHHHHHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRM-------KACYT--CSRP-VLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~~-------~~CPv--Cr~~-~~~~~l~pN~aLr~Lve~~~~e 287 (401)
....|.||||+++|.+||+++ |||+||+.||..||.. ..||+ |+.. +....+.+|..|+.+|+.++..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 357789999999999999996 9999999999999962 38999 8877 8888999999999999887654
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=121.70 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=61.2
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccC-CCCCccHHHHHHHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE-DSIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~-~~l~pN~aLr~Lve~~~~ 286 (401)
..+.+.+.||||+++|.+||+++|||+||..||..|+. ...||+||..+.. ..+.+|..|..+++.+..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 35567889999999999999999999999999999996 4489999999987 788999999999977643
No 9
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=2.2e-14 Score=135.38 Aligned_cols=66 Identities=18% Similarity=0.389 Sum_probs=60.0
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~ 286 (401)
...|.||||+++|.|||+++|||+||+.||.+||. ...||+|+.++....+.+|..|+.+++.+..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 3359999999998899999999999977654
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.9e-14 Score=115.99 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=64.3
Q ss_pred cccccccccccccccccCceec-CCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEE 289 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~ 289 (401)
..+.+.+.|+||++.|.+|+++ +|||+||..||.+|+. ...||+||..+....+.+|..|.++++.++....
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 3456778999999999999998 8999999999999997 5689999999998889999999999998877653
No 11
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.44 E-value=4.9e-14 Score=129.13 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=61.6
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~ 286 (401)
.++..|.||||+++|.|||+++|||+||+.||.+||. ...||+|+.++....+.||..|+++++.+..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999997 2469999999998899999999999987754
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=6.4e-15 Score=115.09 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=54.9
Q ss_pred CccccccccccccccccccCceecCCCCccccccHHhhhc--------ccCCCCCCCCccCCCCCccHHHHHH
Q 015757 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--------MKACYTCSRPVLEDSIAPNLSLRAA 280 (401)
Q Consensus 216 ~~~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--------~~~CPvCr~~~~~~~l~pN~aLr~L 280 (401)
....+.+.+.||||++.|.+|++++|||+||..||.+|+. ...||+||..+....+.+|..|+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 3345677889999999999999999999999999999986 3479999999988878777766443
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=4.6e-14 Score=116.51 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=63.3
Q ss_pred ccccccccccccccccccCcee-cCCCCccccccHHhhhc-c-cCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 217 GDSLRAILSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIR-M-KACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVt-LpCGHsFC~~CI~~~~~-~-~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
...+.+.+.|+||+++|.+|++ ++|||+||..||.+|+. . ..||+||.++....+.++..+..+++.+....
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 3466788999999999999999 99999999999999997 4 58999999999888999988888887776544
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=1.1e-13 Score=120.31 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=59.2
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHH---HHHhhhh
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE---EELQFYR 294 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e---~~~~~~~ 294 (401)
.+.+++.||||++.|.+||+++|||+||..||..|+. ...||+||.++... ..++.+..++..+... .......
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~~l~~~~~~rr~ 126 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMVNNLSSEVKERRI 126 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHHHHhhHHHHHHHH
Confidence 3456789999999999999999999999999999997 66899999988643 2344444444433221 1111224
Q ss_pred hHHhhhhhcccc
Q 015757 295 TCKRKREKFDQD 306 (401)
Q Consensus 295 ~Ck~H~E~Lel~ 306 (401)
.+..|.+...+|
T Consensus 127 ~~~~e~~~~klF 138 (138)
T 4ayc_A 127 VLIRERKAKRLF 138 (138)
T ss_dssp HHHHHHHSCC--
T ss_pred HHHHHHHHhcCC
Confidence 466676655443
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=121.66 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=60.9
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCC-CCCccHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLED-SIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~-~l~pN~aLr~Lve~~~~ 286 (401)
.+.+.+.|+||+++|.+||+++|||+||..||..|+. ...||+||..+... .+.+|..|+.+++.+..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4567789999999999999999999999999999997 34799999999877 88999999999987754
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=2.2e-13 Score=113.33 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=60.6
Q ss_pred ccccccccccccccccCceec-CCCCccccccHHhhhc-ccCCCCCCCCccCC----CCCccHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLED----SIAPNLSLRAAVQAFRR 286 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~----~l~pN~aLr~Lve~~~~ 286 (401)
.+.+.+.||||+++|.+|+++ +|||+||..||..|+. ...||+|+..+... .+.+|..|..+++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 457889999999999999998 9999999999999997 56899999998865 67789999999988755
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.7e-13 Score=105.19 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=50.4
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSL 277 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aL 277 (401)
......+.|+||++.|.+|++++|||+||..||.+|+. ...||+||..+. ..+.++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 34456789999999999999999999999999999997 668999999986 556666544
No 18
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.36 E-value=1.4e-13 Score=122.74 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=59.5
Q ss_pred ccccccccccccccccccCceec-CCCCccccccHHhhhc--ccCCCCCCCCcc-CCCCCccHHHHHHHHHHHHHHHHhh
Q 015757 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR--MKACYTCSRPVL-EDSIAPNLSLRAAVQAFRREEELQF 292 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~--~~~CPvCr~~~~-~~~l~pN~aLr~Lve~~~~e~~~~~ 292 (401)
...+...+.||||++.|.+|+++ +|||+||..||..|+. ...||+||..+. ...+.+|..|..+++.+....
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~---- 123 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR---- 123 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-------
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch----
Confidence 34556788999999999999998 8999999999999997 557999999985 456889999999998876543
Q ss_pred hhhHHhhhhhc
Q 015757 293 YRTCKRKREKF 303 (401)
Q Consensus 293 ~~~Ck~H~E~L 303 (401)
..|..|.+.+
T Consensus 124 -~~~~~~~e~~ 133 (165)
T 2ckl_B 124 -DEYEAHQERV 133 (165)
T ss_dssp -----------
T ss_pred -hHHHHHHHHH
Confidence 2366676654
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.1e-13 Score=102.23 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=50.0
Q ss_pred cccccccccccccccccCceec-CCCCccccccHHhhhc-ccCCCCCCCCccCCCCCcc
Q 015757 218 DSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN 274 (401)
..+++.+.|+||++.|.+|+++ +|||+||..||.+|+. ...||+||..+...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 4557788999999999999998 9999999999999997 6689999999987766554
No 20
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=2.7e-13 Score=112.51 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=60.2
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhcc----cCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM----KACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~----~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
.+.+.+.|+||++.|.+|++++|||+||..||..|+.. ..||+|+..+....+.++..+..+++.++..
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999973 3799999999988898888888888777654
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.2e-13 Score=108.38 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=54.1
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc-------ccCCCCCCCCccCCCCCccHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVLEDSIAPNLSLRAA 280 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-------~~~CPvCr~~~~~~~l~pN~aLr~L 280 (401)
..+.+.+.|+||++.|.+|++++|||+||..||..|+. ...||+||..+....+.+|..|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 34567889999999999999999999999999999985 3479999999998888888766543
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-13 Score=108.03 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=54.2
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc-------ccCCCCCCCCccCCCCCccHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVLEDSIAPNLSLRAA 280 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-------~~~CPvCr~~~~~~~l~pN~aLr~L 280 (401)
..+.+.+.|+||++.+.+|++++|||+||..||..|+. ...||+||..+....+.+|+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34567789999999999999999999999999999985 3589999999998888888766443
No 23
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=6.9e-13 Score=111.31 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=58.8
Q ss_pred ccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccC-------CCCCccHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE-------DSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~-------~~l~pN~aLr~Lve~~~~e 287 (401)
.+.+++.|+||+++|.+|++++|||+||..||.+|+. ...||+||..+.. ..+..|..|..+++.+...
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 4467889999999999999999999999999999986 4589999999863 5677888888888776543
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.30 E-value=9.8e-13 Score=111.31 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=57.5
Q ss_pred ccccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHH
Q 015757 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQ 282 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve 282 (401)
...+.+.+.||||+++|.+|++++|||+||..||..|+. ...||+||..+....+.++..+.+++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence 345678899999999999999999999999999999997 348999999998888888888776664
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=100.44 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=45.0
Q ss_pred cccccccccccccccccCceecC-CCCccccccHHhhhc-c--cCCCCCCCCccC
Q 015757 218 DSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-M--KACYTCSRPVLE 268 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~-~--~~CPvCr~~~~~ 268 (401)
..+.+.+.||||+++|.+||+++ |||+||+.||.+|+. . ..||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 35567889999999999999999 999999999999997 2 589999998553
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=98.47 Aligned_cols=54 Identities=13% Similarity=0.347 Sum_probs=47.2
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCC
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l 271 (401)
..+.+.+.||||++.+.+|++++|||+||..||.+|+. ...||+||..+....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 44567889999999999999999999999999999994 5689999999876543
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.8e-12 Score=96.91 Aligned_cols=54 Identities=19% Similarity=0.473 Sum_probs=46.9
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc----ccCCCCCCCCccCCCC
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSI 271 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvCr~~~~~~~l 271 (401)
..+.+.+.|+||++.|.+|++++|||+||..||..|+. ...||+||..+....+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34567889999999999999999999999999999995 4489999999876544
No 28
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.7e-12 Score=123.85 Aligned_cols=69 Identities=19% Similarity=0.374 Sum_probs=61.7
Q ss_pred ccccccccccccccccCceec-CCCCccccccHHhhhc---ccCCCC--CCCCccCCCCCccHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR---MKACYT--CSRPVLEDSIAPNLSLRAAVQAFRRE 287 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~---~~~CPv--Cr~~~~~~~l~pN~aLr~Lve~~~~e 287 (401)
.....+.||||+++|++||++ .|||+||+.||.+||+ ...||+ |+..+....+.+|..|+++++..+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 456788999999999999985 8999999999999997 247999 99999999999999999999887553
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.2e-12 Score=96.28 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=43.7
Q ss_pred cccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
..+.+.|+||++.+.+|++++|||.||..||.+|+. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 346678999999999999999999999999999986 5689999998763
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=93.82 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=44.6
Q ss_pred cccccccccccccccccCc-------eecCCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 218 DSLRAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dP-------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
..+.+.+.|+||++.|.+| ++++|||.||..||.+|+. ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4456778999999999988 8899999999999999997 6689999998753
No 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.16 E-value=9.7e-12 Score=111.07 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=57.6
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCccHHHHHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQA 283 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN~aLr~Lve~ 283 (401)
..+.+.|.||||+++|.+||+++|||+||+.||.+|+. ...||+||..+....+.++..+.+++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 45678899999999999999999999999999999996 3489999999988888888877766643
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.16 E-value=1.2e-11 Score=103.97 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=51.3
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCc-cHHHHH
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAP-NLSLRA 279 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~p-N~aLr~ 279 (401)
..+.+.+.||||+++|.+|++++|||+||..||.+|+. ...||+||..+....+.+ +..+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~ 82 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHH
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHH
Confidence 45567889999999999999999999999999999997 458999999988766543 333333
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=8e-12 Score=95.46 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=47.5
Q ss_pred ccccccccccccccCc-------eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 221 ~e~LsCPIClelf~dP-------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN 274 (401)
.+.+.|+||++.|.+| +.++|||.||..||.+|+. ...||+||..+....+.+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 4567899999999998 8999999999999999997 6689999999987766553
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=3.2e-11 Score=94.16 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=47.0
Q ss_pred cccccccccccccccccCc---eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCcc
Q 015757 218 DSLRAILSDPVTGNLMDDA---MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dP---VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN 274 (401)
......+.|+||++.|.++ ++++|||.||..||.+|++ ...||+||..+....+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3445677899999999866 4569999999999999997 6689999999987666543
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=95.96 Aligned_cols=52 Identities=23% Similarity=0.477 Sum_probs=45.6
Q ss_pred cccccccccccccccccC----ceecCCCCccccccHHhhhc-c---cCCCCCCCCccCC
Q 015757 218 DSLRAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIR-M---KACYTCSRPVLED 269 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~d----PVtLpCGHsFC~~CI~~~~~-~---~~CPvCr~~~~~~ 269 (401)
..+.+.+.|+||++.|.+ |++++|||+||..||.+|+. . ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345677899999999999 99999999999999999997 2 6899999987654
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=91.42 Aligned_cols=45 Identities=18% Similarity=0.493 Sum_probs=40.2
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc----ccCCCCC
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvC 262 (401)
..+.+.+.||||++.|.+|++++|||+||+.||.+|++ ...||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45567889999999999999999999999999999996 3479988
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.4e-11 Score=93.32 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=45.2
Q ss_pred cccccccccc-cccCc----eecCCCCccccccHHhhhc--ccCCCCCCCCccCCCCCcc
Q 015757 222 AILSDPVTGN-LMDDA----MILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPN 274 (401)
Q Consensus 222 e~LsCPICle-lf~dP----VtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l~pN 274 (401)
+++.||||++ +|.+| ++++|||+||..||.+|+. ...||+||..+....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 3568999999 99999 5789999999999999975 4579999999987776553
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=88.70 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=40.1
Q ss_pred ccccccccccccccccccCceecCCCCccccccHHhhhc----ccCCCCC
Q 015757 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~----~~~CPvC 262 (401)
...+.+.+.|+||++.+.+|++++|||+||..||.+|+. ...||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345567789999999999999999999999999999964 4589987
No 39
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=6.3e-12 Score=110.45 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=45.1
Q ss_pred ccccccccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
...+.+.+.||||+++|.+||+++|||+||+.||.+|+. ...||+||.++.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 346678899999999999999999999999999999997 348999998753
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.08 E-value=1.6e-11 Score=91.56 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=45.1
Q ss_pred cccccccccccccCc-------eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCc
Q 015757 222 AILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 222 e~LsCPIClelf~dP-------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~p 273 (401)
+.+.|+||++.+.+| +.++|||.||..||.+|+. ...||+||..+...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 356899999999988 8899999999999999997 668999999988765543
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=8.7e-11 Score=93.57 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=43.8
Q ss_pred ccccccccccccccc--cCceecC--CCCccccccHHhhhc--ccCCCCCCCCccCCCC
Q 015757 219 SLRAILSDPVTGNLM--DDAMILP--CGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (401)
Q Consensus 219 ~l~e~LsCPIClelf--~dPVtLp--CGHsFC~~CI~~~~~--~~~CPvCr~~~~~~~l 271 (401)
.+++++.||||++.+ .+++.++ |||+||+.|+.++|. ...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456788999999988 4566666 999999999999985 5689999999876544
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=5.9e-11 Score=88.08 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=41.1
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCccCC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~ 269 (401)
.+.+.|+||++.|.+|++++|||+||..||..+ ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~--~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS--GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS--SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC--CCCCCcCCcEeecC
Confidence 356789999999999999999999999999873 55899999987643
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=6.7e-11 Score=90.49 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=44.5
Q ss_pred cccccccccccccccccCceecCCCCccccccHHhhhc-ccCCCCCCCCccCC
Q 015757 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (401)
Q Consensus 218 ~~l~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~ 269 (401)
..+.+.+.|+||++.+.+ ++++|||.||..||.+|+. ...||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 344567899999999999 9999999999999999987 67899999887754
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.96 E-value=2.7e-10 Score=86.41 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=40.9
Q ss_pred cccccccccccccCc-eecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDA-MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dP-VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
....|+||++.+.+| +.++|||.||..||.+|++ ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 345799999999997 7889999999999999987 678999998876
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=3.6e-10 Score=82.27 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=40.9
Q ss_pred ccccccccccccccC---ceecC-CCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLMDD---AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf~d---PVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+...|+||++.|.+ ++.++ |||.||..||.+|++ ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 355689999999987 78887 999999999999997 668999998763
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.95 E-value=3.6e-10 Score=82.13 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=40.1
Q ss_pred cccccccccccccC----ceecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~d----PVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
....|+||++.|.+ ++.++|||.||..||.+|+. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34579999999976 88899999999999999997 678999998764
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=1.9e-10 Score=96.95 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=46.3
Q ss_pred ccccccccccccccCc-------eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCc
Q 015757 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 221 ~e~LsCPIClelf~dP-------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~p 273 (401)
.+.+.|+||++.|.+| ++++|||+||..||.+|++ ...||+||+.+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 3567899999999999 9999999999999999997 568999999988665543
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.3e-10 Score=85.52 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.9
Q ss_pred cccccccccccccccCceec---CCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 220 LRAILSDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtL---pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
+.....|+||++.|.++..+ +|||.||..||.+|++ ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 35567899999999877555 9999999999999997 5689999998764
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=8.4e-10 Score=84.06 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.5
Q ss_pred cccccccccccccc---CceecCCCCccccccHHhhhc-ccCCCCCCCCccCC
Q 015757 221 RAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (401)
Q Consensus 221 ~e~LsCPIClelf~---dPVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~ 269 (401)
.....|+||++.|. .++.++|||.||..||.+|+. ...||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45568999999884 567899999999999999997 66899999987654
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.90 E-value=5.2e-10 Score=90.54 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=42.0
Q ss_pred ccccccccccccccC---ceecCCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~d---PVtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
.....|+||++.|.. +++++|||.||..||..|+. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456689999999987 88899999999999999997 6689999988753
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=5.7e-10 Score=86.64 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=41.9
Q ss_pred ccccccccccccccCc---eecCCCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDDA---MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~dP---VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
.+...|+||++.|..+ +.++|||.||..||.+|++ ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3556899999999887 7889999999999999997 6689999998764
No 52
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.88 E-value=4.4e-10 Score=85.56 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=46.9
Q ss_pred ccccccccccccCceec-CCCCccccccHHhhhc-ccCCCCCCCCccCCCCCccH
Q 015757 223 ILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (401)
Q Consensus 223 ~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~ 275 (401)
.|.||||+++|.|||++ +|||+|++.||.+|+. ...||+++.++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 46899999999999999 8999999999999997 55799999999888777653
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=4.8e-10 Score=87.65 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=41.8
Q ss_pred ccccccccccccccccCceecCCCCc-cccccHHhhhcccCCCCCCCCccC
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.+.+.+.|+||++.+.+|+.++|||. ||..|+.+| ..||+||..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 44567899999999999999999999 999999987 689999998763
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.79 E-value=2e-09 Score=89.64 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred cccccccccccCce------------------ecCCCCccccccHHhhhc------ccCCCCCCCCccC
Q 015757 224 LSDPVTGNLMDDAM------------------ILPCGHSFGAAGVQHVIR------MKACYTCSRPVLE 268 (401)
Q Consensus 224 LsCPIClelf~dPV------------------tLpCGHsFC~~CI~~~~~------~~~CPvCr~~~~~ 268 (401)
..|+||++.|.+|+ .++|||.||..||..|+. ...||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 47999999998775 688999999999999993 4589999988764
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=83.93 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=40.9
Q ss_pred ccccccccccccccccCceecCCCCc-cccccHHhhhcccCCCCCCCCccC
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.+.+.+.|+||++.+.+|+.++|||. ||..|+.+ ...||+||.++..
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---CSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---CCCCccCCceecC
Confidence 34566789999999999999999999 99999975 3689999998764
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=1.5e-09 Score=91.40 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=46.2
Q ss_pred ccccccccccccccCc-------eecCCCCccccccHHhhhc-ccCCCCCCCCccCCCCCc
Q 015757 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (401)
Q Consensus 221 ~e~LsCPIClelf~dP-------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~p 273 (401)
.+.+.|+||++.|.+| +.++|||.||..||.+|++ .+.||+||..+...++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence 4567899999999987 8899999999999999997 779999999988665544
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1e-08 Score=81.33 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=39.5
Q ss_pred ccccccccccccccC--------------ceecC-CCCccccccHHhhhc-ccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDD--------------AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~d--------------PVtLp-CGHsFC~~CI~~~~~-~~~CPvCr~~~~~ 268 (401)
.++..|+||++.|.+ +++++ |||.|+..||.+|+. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 345679999999976 45555 999999999999997 5689999998753
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.62 E-value=1.2e-08 Score=103.41 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=42.3
Q ss_pred cccccccccccccCceecCCCCccccccHHhhhc--ccCCCCCCCCccC
Q 015757 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE 268 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~~ 268 (401)
....|+||++.+.+|+.++|||.||..||..|+. ...||+||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3468999999999999999999999999999986 5689999998764
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.5e-08 Score=76.28 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=39.8
Q ss_pred ccccccccccccccCceecCCCCc-cccccHHhhhcccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.+...|+||++.+.+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---CCCCCCCCcchhc
Confidence 456789999999999999999999 99999985 4689999998764
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.58 E-value=1.2e-08 Score=80.97 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.8
Q ss_pred cccccccccccccccCceecCCCCc-cccccHHhhhcccCCCCCCCCccC
Q 015757 220 LRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
+.+...|+||++.+.+|+.+||||. ||..|+..++ .||+||.++..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~---~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ---SCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS---BCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC---cCCCCCchhhC
Confidence 4566789999999999999999999 9999998764 79999998764
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=9.4e-09 Score=83.35 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=37.7
Q ss_pred cccccccccccccCceec---CCCCccccccHHhhhc---------ccCCCC--CCCC
Q 015757 222 AILSDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR---------MKACYT--CSRP 265 (401)
Q Consensus 222 e~LsCPIClelf~dPVtL---pCGHsFC~~CI~~~~~---------~~~CPv--Cr~~ 265 (401)
..+.|+||++.+.+|+++ +|||.||+.||..+|. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999998775 6999999999999995 137999 9887
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.53 E-value=2.5e-08 Score=76.00 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=40.8
Q ss_pred cccccccccccccCceec--CCCCc-cccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtL--pCGHs-FC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
+...|+||++.+.+++.+ ||||. ||..|+.+++. ...||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 455799999999999987 99999 89999999986 568999999875
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.52 E-value=2.8e-08 Score=75.44 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=40.4
Q ss_pred cccccccccccccCceec--CCCCc-cccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtL--pCGHs-FC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
....|+||++.+++++.+ ||||. ||..|+.+++. ...||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 344799999999999988 99998 99999999886 568999999875
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=3e-08 Score=99.05 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=42.0
Q ss_pred ccccccccccccccccCceecCCCCc-cccccHHhhhcccCCCCCCCCccC
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCGHs-FC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.+.+.+.|+||++.+.+||.+||||. ||..|+..+ ..||+||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence 44677899999999999999999999 999999987 579999998763
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.39 E-value=1.4e-07 Score=79.22 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred cccccccccccccCc------------------eecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDA------------------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dP------------------VtLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
++-.|+||++.|.++ +.++|||.|+..||.+|+. ...||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 455799999999876 4478999999999999997 668999999854
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=3.3e-06 Score=67.36 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=40.1
Q ss_pred cccccccccccc--cCceecCCC-----CccccccHHhhhc---ccCCCCCCCCccCC
Q 015757 222 AILSDPVTGNLM--DDAMILPCG-----HSFGAAGVQHVIR---MKACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf--~dPVtLpCG-----HsFC~~CI~~~~~---~~~CPvCr~~~~~~ 269 (401)
+...|.||++.+ .+++++||. |.|...||.+|+. ...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 445799999877 478999996 9999999999997 24899999988643
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.04 E-value=6.4e-07 Score=76.69 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=0.8
Q ss_pred cccccccccccccCce------------------ecCCCCccccccHHhhhc-ccCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAM------------------ILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPV------------------tLpCGHsFC~~CI~~~~~-~~~CPvCr~~~~ 267 (401)
.+-.|+||++.|.++. .++|+|.|+..||.+|+. ...||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3457999999997642 258999999999999997 568999998754
No 68
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.94 E-value=2.2e-06 Score=69.94 Aligned_cols=90 Identities=16% Similarity=0.084 Sum_probs=56.3
Q ss_pred cccccccccc-cccCcee--cCCCCccccccHHhhhcccCCCCCCCCccCCCCCccHHHHHHHHHHHHHHHHhhhhhHHh
Q 015757 222 AILSDPVTGN-LMDDAMI--LPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQFYRTCKR 298 (401)
Q Consensus 222 e~LsCPICle-lf~dPVt--LpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~~~~~~~~Ck~ 298 (401)
+++.|+||.+ ++.+||. +.|+|+||..|+..++.... +.=+..+.. .+ ... ......|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~-~~~~h~l~~-~~-~~~--------------~~~~~~C~~ 64 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKK-PFTGHRLIE-PI-PDS--------------HIRGLMCLE 64 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCS-SSTTCCBSS-CC-CSC--------------CSSCCCCSS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCC-ccCCCeeec-cc-ccc--------------CccCCcCcC
Confidence 4578999996 5789998 89999999999998432110 000111110 00 000 001246999
Q ss_pred h-hhhcccccCcCCCCc---ccCCCCCCCccc-Cc
Q 015757 299 K-REKFDQDKGSYGDST---VMDPPRGRGVQF-PF 328 (401)
Q Consensus 299 H-~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi 328 (401)
| ++++++|+..++.++ |..++.|++|.+ |+
T Consensus 65 H~~e~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 65 HEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CSSSCCCEEETTTTEEECHHHHHHTTTSSSCBCCC
T ss_pred cCCCcceEECCCCCCccchhcCCCCCcCCCCeecC
Confidence 9 588999843456555 444578999987 65
No 69
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.85 E-value=1e-05 Score=89.68 Aligned_cols=70 Identities=19% Similarity=0.347 Sum_probs=63.2
Q ss_pred ccccccccccccccccCceecCCC-CccccccHHhhhc-ccCCCCCCCCccCCCCCccHHHHHHHHHHHHHH
Q 015757 219 SLRAILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (401)
Q Consensus 219 ~l~e~LsCPIClelf~dPVtLpCG-HsFC~~CI~~~~~-~~~CPvCr~~~~~~~l~pN~aLr~Lve~~~~e~ 288 (401)
..++.|.|||.+++|+|||+++.| ++|-+.+|.+|+. ..+||.-|.++....+.||++|+.+|+.+....
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 446889999999999999999998 6999999999997 668999999999999999999999998776654
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=9.7e-05 Score=58.30 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=37.3
Q ss_pred cccccccccccccCceec-CCCCccccccHHhhhc-c--cCCCCCCCCcc
Q 015757 222 AILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-M--KACYTCSRPVL 267 (401)
Q Consensus 222 e~LsCPIClelf~dPVtL-pCGHsFC~~CI~~~~~-~--~~CPvCr~~~~ 267 (401)
..-.|.||.+++..-+.- .|+|.|-..||.+|++ . ..||.|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 344799999988744433 6999999999999997 3 58999998865
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.78 E-value=0.00079 Score=50.69 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=37.3
Q ss_pred ccccccccccccCceecCCC--C---ccccccHHhhhc---ccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMDDAMILPCG--H---SFGAAGVQHVIR---MKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCG--H---sFC~~CI~~~~~---~~~CPvCr~~~~ 267 (401)
.-.|.||++...+++++||. + .|...||.+|+. ...||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34699999888888889965 4 789999999996 468999998865
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.63 E-value=0.00086 Score=55.89 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=35.5
Q ss_pred ccccccccccC-ceecCCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 225 SDPVTGNLMDD-AMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 225 sCPIClelf~d-PVtLpCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
.|++|.-.+.. ..++||.|.||..|+..|.+ ...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 58999876653 46689999999999999875 578999998865
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.52 E-value=0.00085 Score=67.21 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.0
Q ss_pred ccccccccccccC----ce----ecCCCCccccccHHhhhcc------------cCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMDD----AM----ILPCGHSFGAAGVQHVIRM------------KACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~d----PV----tLpCGHsFC~~CI~~~~~~------------~~CPvCr~~~~ 267 (401)
...|+||...+.+ |. ...|||.|...||.+|+++ ..||.|+.+++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3469999998876 31 2369999999999999961 36999999876
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.30 E-value=0.095 Score=49.47 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=37.2
Q ss_pred ccccccccccccCceecC-CCCccccccHHhhhc---ccCCCCCCCCccCC
Q 015757 223 ILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPVLED 269 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~---~~~CPvCr~~~~~~ 269 (401)
...|.||.++..--+.-+ |+|.|...|+.+|++ ...||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 457999999877544443 999999999999996 34899999876543
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.15 Score=51.40 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred cccccccccccccccCceecC-CCCccccccHHhhhc------ccCCCCCCCCccCCCCCccHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLSLRAAV 281 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~------~~~CPvCr~~~~~~~l~pN~aLr~Lv 281 (401)
..-.|.|||....|..|+... |.|.-|-.- ..++. ...||+|.+.+...+|..+.-+..++
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 345588999999999999876 999966553 22222 56899999999888888887776555
No 76
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=89.90 E-value=0.095 Score=35.72 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=26.6
Q ss_pred hhhHHhhhhhcccccCcCCCCc---ccCCCCCCCccc-Cc
Q 015757 293 YRTCKRKREKFDQDKGSYGDST---VMDPPRGRGVQF-PF 328 (401)
Q Consensus 293 ~~~Ck~H~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi 328 (401)
...|..|+++|++|+..++.++ |..+..|++|.+ |+
T Consensus 3 ~~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 42 (42)
T 1fre_A 3 LEKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI 42 (42)
T ss_dssp -CCCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCCCCCC
T ss_pred cccchhhCCeeeEEeCCCCeEEeccCCCCCCCCCCcEecC
Confidence 3579999999999954467666 455678999986 53
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.97 E-value=0.23 Score=49.80 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=46.3
Q ss_pred cccccccccccccccCceecC-CCCccccccHHhhhc------ccCCCCCCCCccCCCCCccHHHHHHH
Q 015757 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLSLRAAV 281 (401)
Q Consensus 220 l~e~LsCPIClelf~dPVtLp-CGHsFC~~CI~~~~~------~~~CPvCr~~~~~~~l~pN~aLr~Lv 281 (401)
+.-.|.|||....|..|+... |.|.-|-.- ..++. ...||+|.+.+...+|..+.-+..++
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 345678999999999999875 999966542 22332 56899999999888888887776655
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.26 E-value=1.1 Score=36.08 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=29.3
Q ss_pred ccccccccccccccCceecCC----CCccccccHHhhhc
Q 015757 221 RAILSDPVTGNLMDDAMILPC----GHSFGAAGVQHVIR 255 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpC----GHsFC~~CI~~~~~ 255 (401)
...|.|.||.+-+.|---..| +|.||-.|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 467889999999998766655 69999999988875
No 79
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=81.72 E-value=0.34 Score=34.63 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=28.1
Q ss_pred hhHHhhhhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRKREKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..|+++|++|+..++.++ |..+..|++|.+ |+.
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECC
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHH
Confidence 469999999999954577766 556788999987 764
No 80
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.95 E-value=0.46 Score=34.99 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.2
Q ss_pred hhHHhhhhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRKREKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..|+++|++|+..++.++ |..+..|++|.+ |+.
T Consensus 15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeHH
Confidence 469999999999954577766 566788999987 664
No 81
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=74.11 E-value=0.34 Score=37.69 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=27.7
Q ss_pred hhHHhh-hhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRK-REKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H-~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..| .++|.+|+..++.++ |..++.|++|.+ |+.
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHH
Confidence 469999 699999944466665 556788999998 775
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.60 E-value=1.6 Score=35.94 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=35.2
Q ss_pred cccccccccccccCceecCC-CCccccccHHhhhc-ccCCCCCCCCccCC
Q 015757 222 AILSDPVTGNLMDDAMILPC-GHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpC-GHsFC~~CI~~~~~-~~~CPvCr~~~~~~ 269 (401)
.-+.|-.|.-..+ -.+.| -|.+|..||...+. +..||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3457999976555 44556 58899999999887 66899999887743
No 83
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.60 E-value=0.74 Score=33.86 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=27.9
Q ss_pred hhHHhh-hhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRK-REKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H-~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..| .++|.+|+..++.++ |...+.|++|.+ |+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 49 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQ 49 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTT
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHH
Confidence 469999 899999954467766 445678999998 775
No 84
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=69.68 E-value=0.42 Score=33.46 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=26.1
Q ss_pred hhHHhhh-hhcccccCcCCCCc---ccCCCCCCCccc-Cc
Q 015757 294 RTCKRKR-EKFDQDKGSYGDST---VMDPPRGRGVQF-PF 328 (401)
Q Consensus 294 ~~Ck~H~-E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi 328 (401)
..|..|. ++|++|+..++.++ |...+.|++|.+ |+
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence 4699999 89999954466666 444678999987 65
No 85
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.61 E-value=0.34 Score=35.57 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=24.6
Q ss_pred hhHHhhhhhcccccCcCCCCc---ccCCCCCCCccc
Q 015757 294 RTCKRKREKFDQDKGSYGDST---VMDPPRGRGVQF 326 (401)
Q Consensus 294 ~~Ck~H~E~Lel~kc~~~e~~---~~~s~~hk~hqf 326 (401)
..|..|+++|++|+..++.++ |..+..|++|.+
T Consensus 19 ~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~~ 54 (57)
T 2egm_A 19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSV 54 (57)
T ss_dssp SBCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSCE
T ss_pred CcChhhCceeeEEcCCCCcEEecccCCCCCCCCCcE
Confidence 469999999999954466665 444567888876
No 86
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=58.59 E-value=1.5 Score=33.22 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=26.9
Q ss_pred hhHHhhhhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRKREKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..|+++|.+|+..++.++ |.. ..|++|.+ |+.
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~-~~H~~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMF-QEHKNHSTVTVE 57 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHH-TTTSSSCEEEHH
T ss_pred CcCcccCCceEEEeCCCCeEEccccCC-CCCCCCCEecHH
Confidence 469999999999954467666 444 78999987 664
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.17 E-value=11 Score=30.78 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.9
Q ss_pred ccccccccccc-----Cceec--CCCCccccccHHhhhc--ccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~-----dPVtL--pCGHsFC~~CI~~~~~--~~~CPvCr~~~~ 267 (401)
-.|.||.+-.- ++.+. -|+-..|+.|+.--.+ ...||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 36999988643 22222 4888889999975444 678999998875
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=52.56 E-value=2.2 Score=35.29 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=29.5
Q ss_pred cccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
..||+|...+.- .=++.+|..|-..+.....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhccccCcchhhHHH
Confidence 679999877652 1245559999887766678999988765
No 89
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=49.41 E-value=2.1 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=25.3
Q ss_pred hhHHhh-hhhcccccCcCCCCc---ccCCCCCCCccc-Ccc
Q 015757 294 RTCKRK-REKFDQDKGSYGDST---VMDPPRGRGVQF-PFA 329 (401)
Q Consensus 294 ~~Ck~H-~E~Lel~kc~~~e~~---~~~s~~hk~hqf-Pi~ 329 (401)
..|..| +++|.+|+..++.++ |.. ..|++|.+ |+.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~-~~H~~H~~~~l~ 46 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQL-NAHKDHQYQFLE 46 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHH-TTTTTCCEEETT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCC-CcCCCCceecHH
Confidence 469999 899999944466655 433 48999987 664
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=46.83 E-value=2.6 Score=35.79 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=27.1
Q ss_pred cccccccccccccCc----eecCCCCccccccHHhhhc-ccCCCCCCC
Q 015757 222 AILSDPVTGNLMDDA----MILPCGHSFGAAGVQHVIR-MKACYTCSR 264 (401)
Q Consensus 222 e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~~~-~~~CPvCr~ 264 (401)
....|..|...|.-- --..||..||..|...... .+.|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 344799999887531 2235999999999876543 455666643
No 91
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.07 E-value=11 Score=29.46 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=25.3
Q ss_pred CccccccccccccccccccCc----eecCCCCccccccHHhh
Q 015757 216 SGDSLRAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 216 ~~~~l~e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
.|....+...|.+|...|.-- --..||..||..|....
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 344444556799999988521 11359999999997543
No 92
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.50 E-value=4.4 Score=30.17 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=21.9
Q ss_pred cccccccccc-----CceecC---CCCccccccHHhhhc
Q 015757 225 SDPVTGNLMD-----DAMILP---CGHSFGAAGVQHVIR 255 (401)
Q Consensus 225 sCPIClelf~-----dPVtLp---CGHsFC~~CI~~~~~ 255 (401)
.||-|.-.+. .-|+-. |++.||..|...|..
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 5888877664 234444 888999999887764
No 93
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.36 E-value=3.6 Score=27.60 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=10.7
Q ss_pred cccccccccccccCce
Q 015757 222 AILSDPVTGNLMDDAM 237 (401)
Q Consensus 222 e~LsCPIClelf~dPV 237 (401)
+-|.||||+..|..+-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888877776553
No 94
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.69 E-value=11 Score=31.87 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=24.9
Q ss_pred ccccccccccccccccccCc----eecCCCCccccccHHhh
Q 015757 217 GDSLRAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 217 ~~~l~e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
|....+...|.+|...|.-- ---.||+.||..|....
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 33333445799999988621 11359999999997654
No 95
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.70 E-value=7.7 Score=30.45 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=20.5
Q ss_pred cccccccccc-----CceecC-CCCccccccHHhh
Q 015757 225 SDPVTGNLMD-----DAMILP-CGHSFGAAGVQHV 253 (401)
Q Consensus 225 sCPIClelf~-----dPVtLp-CGHsFC~~CI~~~ 253 (401)
-||-|...+. .+|+-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4888877542 234555 9999999998776
No 96
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.48 E-value=22 Score=28.13 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=24.0
Q ss_pred ccccccccccccccC----ceecCCCCccccccHHhhh
Q 015757 221 RAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 221 ~e~LsCPIClelf~d----PVtLpCGHsFC~~CI~~~~ 254 (401)
.+...|.+|...|.- -.-..||+.||..|.....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345579999987752 1223599999999987543
No 97
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=37.09 E-value=7.1 Score=39.74 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.8
Q ss_pred cccccc
Q 015757 54 DRDRYF 59 (401)
Q Consensus 54 ~~~~~~ 59 (401)
..+-||
T Consensus 308 ~~~SFF 313 (417)
T 2ayu_A 308 PIESFF 313 (417)
T ss_dssp ECCCGG
T ss_pred CCCCce
Confidence 345554
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.25 E-value=7.5 Score=38.40 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred ccccccccccccccC----ceecCCCCccccccHHhhh
Q 015757 221 RAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVI 254 (401)
Q Consensus 221 ~e~LsCPIClelf~d----PVtLpCGHsFC~~CI~~~~ 254 (401)
...-.|.+|...|.- -....||+.||..|.....
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp --------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 344579999987752 1223599999999986543
No 99
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.12 E-value=12 Score=29.09 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=15.3
Q ss_pred CCCCccccccHHhhhcccCCC
Q 015757 240 PCGHSFGAAGVQHVIRMKACY 260 (401)
Q Consensus 240 pCGHsFC~~CI~~~~~~~~CP 260 (401)
.||+.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSS
T ss_pred CCCCeeccccCccccC-Cccc
Confidence 5899999999988644 4453
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.79 E-value=6.2 Score=31.47 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=25.9
Q ss_pred cccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 224 LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
..||.|...+.- .=++.+|..|-..+.....||.|..++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCcccCcchhhHHH
Confidence 469999876542 1124447777766555457999988764
No 101
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.61 E-value=13 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=18.4
Q ss_pred ccCceecCCCCccccccHHhhhcccCCCCCCCC
Q 015757 233 MDDAMILPCGHSFGAAGVQHVIRMKACYTCSRP 265 (401)
Q Consensus 233 f~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~ 265 (401)
+..|....||+.|+. .......||.|+..
T Consensus 65 v~p~~C~~CG~~F~~----~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKA----EINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCCC----CSSCCSSCSSSCCC
T ss_pred EECcChhhCcCeecc----cCCCCCCCcCCCCC
Confidence 345556778988821 22224689999865
No 102
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=35.44 E-value=18 Score=29.50 Aligned_cols=46 Identities=4% Similarity=0.034 Sum_probs=35.6
Q ss_pred cccccccccccccC-ceecCCCCccccccHHhhhcccCCCCCCCCccC
Q 015757 222 AILSDPVTGNLMDD-AMILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 222 e~LsCPIClelf~d-PVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
+-|.|..|...|.. +....=|..||..|..+.. ...|..|+.++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-CccCcccCCcCCc
Confidence 56899999988865 4555678899999987654 4579999998764
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.22 E-value=16 Score=28.36 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=23.5
Q ss_pred ccccccccccccccCc----eecCCCCccccccHHhh
Q 015757 221 RAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 221 ~e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
.+...|.+|...|.-- --..||..||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4445799999988621 11359999999998654
No 104
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.12 E-value=15 Score=30.11 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=36.7
Q ss_pred cccccccccccccC---ceecCCCCccccccHHhhhccc-CCCCCCCCccCC
Q 015757 222 AILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf~d---PVtLpCGHsFC~~CI~~~~~~~-~CPvCr~~~~~~ 269 (401)
+-|.|..|...|.+ .....=|..||..|..+....+ .|..|..++...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 56899999998863 3445578899999988776532 799999888754
No 105
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.47 E-value=17 Score=28.36 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=26.0
Q ss_pred CccccccccccccccccccCc----eecCCCCccccccHHhh
Q 015757 216 SGDSLRAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 216 ~~~~l~e~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
.|....+...|.+|...|.-- --..||+.||..|....
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344444556899999987531 11359999999997654
No 106
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.48 E-value=10 Score=37.03 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=30.6
Q ss_pred ccccccccccccCceecC----CC--CccccccHHhhhc-ccCCCCCCCC
Q 015757 223 ILSDPVTGNLMDDAMILP----CG--HSFGAAGVQHVIR-MKACYTCSRP 265 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLp----CG--HsFC~~CI~~~~~-~~~CPvCr~~ 265 (401)
.-.||+|+....-.++.. =| +.+|..|-..|-- ...||.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 347999999776555542 34 4668889887764 4479999875
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.52 E-value=19 Score=28.56 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=21.9
Q ss_pred ccccccccccccCc----eecCCCCccccccHHhh
Q 015757 223 ILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 223 ~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
...|.+|...|.-- --..||+.||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34699999877621 11359999999997643
No 108
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.35 E-value=10 Score=36.94 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.8
Q ss_pred CCCccccccccc
Q 015757 35 PGPKTRELTGFI 46 (401)
Q Consensus 35 ~~~~~~~~~~~~ 46 (401)
+.|||+++..|+
T Consensus 183 ~~~KTK~~~~~L 194 (293)
T 3bbo_G 183 EKPKTKDFIAAM 194 (293)
T ss_dssp TCCSSHHHHTTH
T ss_pred cCCCHHHHHHHH
Confidence 678999888776
No 109
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.95 E-value=12 Score=33.04 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=36.4
Q ss_pred ccccccccccccccC---ceecCCCCccccccHHhhhccc-CCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~d---PVtLpCGHsFC~~CI~~~~~~~-~CPvCr~~~~~ 268 (401)
.+-|.|..|...|.+ +....=|..||..|..+..... .|..|..++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 366899999988874 5556678899999987766433 69999888763
No 110
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.58 E-value=58 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=21.9
Q ss_pred cccccccccccccCceecC---CCCccccccHHhh
Q 015757 222 AILSDPVTGNLMDDAMILP---CGHSFGAAGVQHV 253 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLp---CGHsFC~~CI~~~ 253 (401)
.+-.|+||.-.- .-..+| |+..|...|+.+.
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 445799986433 334455 7889999999986
No 111
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.93 E-value=34 Score=25.45 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=27.0
Q ss_pred ccccccccccCceec---CCCCccccccHHhhhc-ccCCCCC
Q 015757 225 SDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR-MKACYTC 262 (401)
Q Consensus 225 sCPIClelf~dPVtL---pCGHsFC~~CI~~~~~-~~~CPvC 262 (401)
.|--|+..|.+.... .|++.||..|=.=.-+ ...||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 488888888665433 4899999999543223 5589988
No 112
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.38 E-value=42 Score=28.92 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=34.3
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.+-|.|..|...|..-....=|..||..|..+.. ...|..|...+..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH-SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc-cccccccccccCC
Confidence 3568899998887654334567889998887655 4579999887653
No 113
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.26 E-value=22 Score=32.35 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=22.2
Q ss_pred ccccccccccccCc----eecCCCCccccccHHhh
Q 015757 223 ILSDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 223 ~LsCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
.-.|++|...|.-- --..||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35899999887521 11359999999997653
No 114
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.83 E-value=28 Score=27.04 Aligned_cols=46 Identities=4% Similarity=0.068 Sum_probs=33.5
Q ss_pred cccccccccccccCc-eecCCCCccccccHHhhhcccCCCCCCCCccC
Q 015757 222 AILSDPVTGNLMDDA-MILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (401)
Q Consensus 222 e~LsCPIClelf~dP-VtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~ 268 (401)
.-|.|..|...|... ....=|..||..|..+.. ...|..|..++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~-~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED-SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC-CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc-CCccccCCCcccc
Confidence 558899998887643 344568889988876543 4579999888763
No 115
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.72 E-value=44 Score=29.10 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=33.7
Q ss_pred cccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCccCC
Q 015757 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (401)
Q Consensus 222 e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~~~ 269 (401)
.-|.|..|...|.......=|..||..|..+.. ...|..|+.++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc-ccccccCCCccCCC
Confidence 568899998877654333467888988876654 45799998877643
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.63 E-value=29 Score=26.27 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=21.1
Q ss_pred ccccccccccCc----eecCCCCccccccHHhh
Q 015757 225 SDPVTGNLMDDA----MILPCGHSFGAAGVQHV 253 (401)
Q Consensus 225 sCPIClelf~dP----VtLpCGHsFC~~CI~~~ 253 (401)
.|.+|...|.-- --..||..||..|....
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 699999877621 11359999999997643
No 117
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=71 Score=23.74 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=26.9
Q ss_pred ccccccccccccCceecCCCCccccccHHhhhcccCCCCCCCCcc
Q 015757 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~~~~CPvCr~~~~ 267 (401)
.-.|+.|...+.+.++..-+..|...|. .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY-------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT-------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC-------eeCCCCCCCC
Confidence 3469999997777666667766666654 5888877654
No 118
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.64 E-value=33 Score=28.00 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=36.2
Q ss_pred ccccccccccccccC---ceecCCCCccccccHHhhhccc-CCCCCCCCccC
Q 015757 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLE 268 (401)
Q Consensus 221 ~e~LsCPIClelf~d---PVtLpCGHsFC~~CI~~~~~~~-~CPvCr~~~~~ 268 (401)
.+-|.|..|...|.+ +....=|..||..|..+..... .|..|..++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 366899999988853 4555678899999988766432 79999988753
No 119
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.86 E-value=60 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.2
Q ss_pred ccccccccccccccCc
Q 015757 221 RAILSDPVTGNLMDDA 236 (401)
Q Consensus 221 ~e~LsCPIClelf~dP 236 (401)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 10 RKQVACEICGKIFRDV 25 (48)
T ss_dssp CCSEEETTTTEEESSH
T ss_pred CcCeeCCCCCcccCCH
Confidence 4567899998888764
No 120
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.74 E-value=22 Score=29.39 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=10.7
Q ss_pred ccccccHHhhhc
Q 015757 244 SFGAAGVQHVIR 255 (401)
Q Consensus 244 sFC~~CI~~~~~ 255 (401)
.||+.||.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.68 E-value=22 Score=29.43 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.7
Q ss_pred ccccccHHhhhc
Q 015757 244 SFGAAGVQHVIR 255 (401)
Q Consensus 244 sFC~~CI~~~~~ 255 (401)
.||+.||.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.65 E-value=1.1e+02 Score=24.47 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=25.6
Q ss_pred ccccccccccccCceecC---CCCccccccHHhhhc----ccCCCCCCC
Q 015757 223 ILSDPVTGNLMDDAMILP---CGHSFGAAGVQHVIR----MKACYTCSR 264 (401)
Q Consensus 223 ~LsCPIClelf~dPVtLp---CGHsFC~~CI~~~~~----~~~CPvCr~ 264 (401)
...| ||.....+-.++. |..-|-..|+..... ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 8877665545554 666666666654332 458999964
No 123
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.83 E-value=97 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=27.5
Q ss_pred cccccccccccCceec--CCCCccccccHHhhhc-----ccCCCCCCCC
Q 015757 224 LSDPVTGNLMDDAMIL--PCGHSFGAAGVQHVIR-----MKACYTCSRP 265 (401)
Q Consensus 224 LsCPIClelf~dPVtL--pCGHsFC~~CI~~~~~-----~~~CPvCr~~ 265 (401)
-.|.||.+- ..+++ .|...|...|+...+. ...||.|...
T Consensus 13 ~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 359999763 22222 4888999999976653 4589999754
No 124
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=70 Score=23.48 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=31.8
Q ss_pred cccccccccccccC-ceecCCCCcccc-ccHHhhhcccCCCCCCCCc
Q 015757 222 AILSDPVTGNLMDD-AMILPCGHSFGA-AGVQHVIRMKACYTCSRPV 266 (401)
Q Consensus 222 e~LsCPIClelf~d-PVtLpCGHsFC~-~CI~~~~~~~~CPvCr~~~ 266 (401)
.-|.|..|...|.. +....=|..||. .|..+.. ...|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh-CccCCCcCCce
Confidence 56889999988775 455557888999 6987655 44688887543
No 125
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.28 E-value=97 Score=20.59 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=22.8
Q ss_pred ccccccccccccccCceecCCCCccccccHHhhhc-------ccCCCCCCCCcc
Q 015757 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVL 267 (401)
Q Consensus 221 ~e~LsCPIClelf~dPVtLpCGHsFC~~CI~~~~~-------~~~CPvCr~~~~ 267 (401)
+..+.|++|...|.....| ...+. ...|++|.+.+.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L-----------~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHL-----------NGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHH-----------HHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHH-----------HHHHHHhcCCCCCccCCCCCCCCC
Confidence 3457899998888754322 22211 357999988765
Done!