BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015758
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 202/336 (60%), Gaps = 30/336 (8%)
Query: 67 GCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASR 126
G K++G G +P ++N DL KIVDTSDEWI+ RTGI+ RR+ + +E++T +A +AA
Sbjct: 2 GTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRI-AKEETITYMATQAAKE 60
Query: 127 ALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVS 186
AL+ A ++PE++DL+++ T TP+ F + +A A+DI+AACSGF+ L
Sbjct: 61 ALREANLSPEELDLIILATLTPQKRFPSTACLVQAQLKAKGVYAFDISAACSGFIYALDI 120
Query: 187 AACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDV 246
A I+ G +NVLVIG + LS DW DR +C+LFGD AGAV+V + + D +++ +
Sbjct: 121 ADSFIKSGKAKNVLVIGAEKLSEAVDWEDRSTCVLFGDGAGAVVVTRSEDKSD-ILATRM 179
Query: 247 HSDG--EGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVP 304
+++G E H + C I M G+E+F+ AVR +
Sbjct: 180 YAEGSLEELLHADNC--------------------------GYIRMKGRELFKVAVRSME 213
Query: 305 QTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIP 364
+ LEKAG+ + ++ HQAN RII+A+A +L++P E+V N+ YGNTSAASIP
Sbjct: 214 EVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVNIQKYGNTSAASIP 273
Query: 365 LALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
+AL EA++ GKVK G I G GLTWG+ +LR+
Sbjct: 274 IALHEAIKEGKVKRGDLILMTAMGGGLTWGAVLLRY 309
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 205/338 (60%), Gaps = 23/338 (6%)
Query: 69 KLVGCGSAVPTLQISNDDLAKI-----VDTSDEWISVRTGIRNRRVLSGKESLTGLAVEA 123
+++G GS +P +++N DLAK ++TSDEWI RTGI R + + LA A
Sbjct: 13 RVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYFAEPDVTTSDLAFIA 72
Query: 124 ASRALQMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLL 182
+ RA++ A+++P+ +DL+++ TSTP+ +F A + LG +N+ A+D+ A SGF
Sbjct: 73 SQRAIEAADIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAVXSGFAY 132
Query: 183 GLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLI 242
+ +A IR G R LVIG + SR D+ DR +C+LFGD AGAV++QA D + G++
Sbjct: 133 AVATADSFIRSGQHRTALVIGAETFSRILDFKDRTTCVLFGDGAGAVILQASD--EPGVL 190
Query: 243 SFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRV 302
+ +H+DG L C GN NG V++ + ++M+G+ VF+ AV V
Sbjct: 191 ASALHADGSHSNIL--CTPGN-------VNGGVVS------GSAFLHMDGQAVFKLAVNV 235
Query: 303 VPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAAS 362
+ + ALEKA L+ IDWL+ HQAN RI+ + +L +P ER+I + +GNTSAAS
Sbjct: 236 LEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMIVTVGEHGNTSAAS 295
Query: 363 IPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
IPLALD AVR G++K G + G G G TWG++++R+
Sbjct: 296 IPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIRY 333
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 199/339 (58%), Gaps = 32/339 (9%)
Query: 69 KLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRAL 128
K++G GS +P +N DL K+VDTSDEWI RTGIR R + + E+++ + EAA+RA+
Sbjct: 4 KIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAI 63
Query: 129 QMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
+MA + + + L+++ T++ F A QI LG K P A+D+ AAC+GF L A
Sbjct: 64 EMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCP-AFDVAAACAGFTYALSVA 122
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
+++ G + LV+G D L+R D TDRG+ I+FGD AGA ++ A SE+ G+IS +H
Sbjct: 123 DQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA--SEEPGIISTHLH 180
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFP------PQHYSYSSIYMNGKEVFRFAVR 301
+DG S G +L P P++ + + M G EVF+ AV
Sbjct: 181 ADG--------------------SYGELLTLPNADRVNPENSIH--LTMAGNEVFKVAVT 218
Query: 302 VVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAA 361
+ ++ L L S +DWL+ HQAN RII A A +L + M+ V+ L +GNTSAA
Sbjct: 219 ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAA 278
Query: 362 SIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
S+P ALDEAVR G++KPG + FG G TWGSA++R+
Sbjct: 279 SVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 198/339 (58%), Gaps = 32/339 (9%)
Query: 69 KLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRAL 128
K++G GS +P +N DL K+VDTSDEWI RTGIR R + + E+++ + EAA+RA+
Sbjct: 4 KIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAI 63
Query: 129 QMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
+MA + + + L+++ T++ F A QI LG K P A+D+ AA +GF L A
Sbjct: 64 EMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCP-AFDVAAAXAGFTYALSVA 122
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
+++ G + LV+G D L+R D TDRG+ I+FGD AGA ++ A SE+ G+IS +H
Sbjct: 123 DQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA--SEEPGIISTHLH 180
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFP------PQHYSYSSIYMNGKEVFRFAVR 301
+DG S G +L P P++ + + M G EVF+ AV
Sbjct: 181 ADG--------------------SYGELLTLPNADRVNPENSIH--LTMAGNEVFKVAVT 218
Query: 302 VVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAA 361
+ ++ L L S +DWL+ HQAN RII A A +L + M+ V+ L +GNTSAA
Sbjct: 219 ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAA 278
Query: 362 SIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
S+P ALDEAVR G++KPG + FG G TWGSA++R+
Sbjct: 279 SVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 198/339 (58%), Gaps = 32/339 (9%)
Query: 69 KLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRAL 128
K++G GS +P +N DL K+VDTSDEWI RTGIR R + + E+++ + EAA+RA+
Sbjct: 27 KIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAI 86
Query: 129 QMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
+MA + + + L+++ T++ F A QI LG K P A+D+ AA +GF L A
Sbjct: 87 EMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCP-AFDVAAAXAGFTYALSVA 145
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
+++ G + LV+G D L+R D TDRG+ I+FGD AGA ++ A SE+ G+IS +H
Sbjct: 146 DQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA--SEEPGIISTHLH 203
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFP------PQHYSYSSIYMNGKEVFRFAVR 301
+DG S G +L P P++ + + M G EVF+ AV
Sbjct: 204 ADG--------------------SYGELLTLPNADRVNPENSIH--LTMAGNEVFKVAVT 241
Query: 302 VVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAA 361
+ ++ L L S +DWL+ HQAN RII A A +L + M+ V+ L +GNTSAA
Sbjct: 242 ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAA 301
Query: 362 SIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
S+P ALDEAVR G++KPG + FG G TWGSA++R+
Sbjct: 302 SVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 340
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 195/334 (58%), Gaps = 21/334 (6%)
Query: 68 CKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRA 127
+++ GS +P+ +N DL K+VDTSDEWI R+GIR RR+ + E++ + EAA A
Sbjct: 10 SRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERRIAAEDETVATMGFEAAKNA 69
Query: 128 LQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
++ A++NP+D++L+++ T++ + A + L ++ +++D+ AA +GF+ L A
Sbjct: 70 IEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAISFDLAAAXTGFVYALSVA 129
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
IR G + LVIG D SR D TDR + +LFGD AGAV+++A SE +G+IS
Sbjct: 130 DQFIRAGKVKKALVIGSDLNSRKLDETDRSTVVLFGDGAGAVILEA--SEQEGIIS---- 183
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSS-IYMNGKEVFRFAVRVVPQT 306
HL+A N N VLA P + S I M G E F+ AVR +
Sbjct: 184 ------THLHASADKN--------NALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNV 229
Query: 307 IESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLA 366
+E L L +DWL+ HQAN RII A A +L++ M +V+ L Y N SAA++P+A
Sbjct: 230 VEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVVVTLDKYANNSAATVPVA 289
Query: 367 LDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
LDEA+R G+++ G + FG G TWGSA++R+
Sbjct: 290 LDEAIRDGRIQRGQLLLLEAFGGGWTWGSALVRF 323
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 196/339 (57%), Gaps = 28/339 (8%)
Query: 64 INRGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEA 123
+N G K G G+ P I N + +DTSDEWIS TGI+ R + + LA EA
Sbjct: 1 MNVGIK--GFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEA 58
Query: 124 ASRALQMAEVNPEDVDLVLMCTSTPEDLFGG-ATQIPKALGCKNNPLAYDITAACSGFLL 182
+ +A+ A + PED+D++++ T+T + F A + + LG + D AACSGF+
Sbjct: 59 SVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGT-GKVASMDQLAACSGFMY 117
Query: 183 GLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLI 242
+++A +++ G + N+LV+G D LS+ TD TDR + +LFGD AGAV++ SE G+I
Sbjct: 118 SMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAVLFGDGAGAVIIGEV-SEGRGII 176
Query: 243 SFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRV 302
S+++ SDG GG+HL + MNG+EVF+FAVR+
Sbjct: 177 SYEMGSDGTGGKHLYL-----------------------DKDTGKLKMNGREVFKFAVRI 213
Query: 303 VPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAAS 362
+ +EKA LT ID + HQAN RI+++ RL + +++ ++ YGNTSAAS
Sbjct: 214 MGDASTRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKDKMSVSVNKYGNTSAAS 273
Query: 363 IPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRWG 401
IPL++D+ +++GK+K TI GFG GLTWG+ ++WG
Sbjct: 274 IPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAMTIKWG 312
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 193/337 (57%), Gaps = 28/337 (8%)
Query: 69 KLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRAL 128
K++G GS +P +N DL K VDTSDEWI RTGIR R + + E+++ EAA+RA+
Sbjct: 4 KIIGTGSYLPEQVRTNADLEKXVDTSDEWIVTRTGIRERHIAAPNETVSTXGFEAATRAI 63
Query: 129 QMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
+ A + + + L+++ T++ F A QI LG K P A+D+ AAC+GF L A
Sbjct: 64 EXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCP-AFDVAAACAGFTYALSVA 122
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
+++ G + LV+G D L+R D TDRG+ I+FGD AGA ++ A SE+ G+IS +H
Sbjct: 123 DQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA--SEEPGIISTHLH 180
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFP--PQHYSYSSIYMN--GKEVFRFAVRVV 303
+DG S G +L P + +SI++ G EVF+ AV +
Sbjct: 181 ADG--------------------SYGELLTLPNADRVNPENSIHLTXAGNEVFKVAVTEL 220
Query: 304 PQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASI 363
++ L S +DWL+ HQAN RII A A +L + V+ L +GNTSAAS+
Sbjct: 221 AHIVDETLAANNNDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVTLDRHGNTSAASV 280
Query: 364 PLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
P ALDEAVR G++KPG + FG G TWGSA++R+
Sbjct: 281 PCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 193/337 (57%), Gaps = 28/337 (8%)
Query: 69 KLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRAL 128
K++G GS +P +N DL K VDTSDEWI RTGIR R + + E+++ EAA+RA+
Sbjct: 4 KIIGTGSYLPEQVRTNADLEKXVDTSDEWIVTRTGIRERHIAAPNETVSTXGFEAATRAI 63
Query: 129 QMAEVNPEDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSA 187
+ A + + + L+++ T++ F A QI LG K P A+D+ AA +GF L A
Sbjct: 64 EXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCP-AFDVAAAXAGFTYALSVA 122
Query: 188 ACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVH 247
+++ G + LV+G D L+R D TDRG+ I+FGD AGA ++ A SE+ G+IS +H
Sbjct: 123 DQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA--SEEPGIISTHLH 180
Query: 248 SDGEGGRHLNACIKGNQTNDALGSNGSVLAFP--PQHYSYSSIYMN--GKEVFRFAVRVV 303
+DG S G +L P + +SI++ G EVF+ AV +
Sbjct: 181 ADG--------------------SYGELLTLPNADRVNPENSIHLTXAGNEVFKVAVTEL 220
Query: 304 PQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASI 363
++ L L S +DWL+ HQAN RII A A +L + V+ L +GNTSAAS+
Sbjct: 221 AHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVTLDRHGNTSAASV 280
Query: 364 PLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
P ALDEAVR G++KPG + FG G TWGSA++R+
Sbjct: 281 PCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 185/334 (55%), Gaps = 19/334 (5%)
Query: 70 LVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQ 129
++ G+ VP ++N D +DTSDEWI RTGI+ RRV + E + LA +A L+
Sbjct: 4 ILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLR 63
Query: 130 MAEVNPEDVDLVLMCTSTPEDLFGGATQIPKA-LGCKNNPLAYDITAACSGFLLGLVSAA 188
E VD V++ T+TP+ LF + +A G K AYD+ A G++ L A
Sbjct: 64 RHPGALEGVDAVIVATNTPDALFPDTAALVQARFGLK--AFAYDLLAGXPGWIYALAQAH 121
Query: 189 CHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHS 248
+ G + VL +G +ALS+ DW DR + +LFGD GA +V E G SF + +
Sbjct: 122 ALVEAGLAQKVLAVGAEALSKIIDWNDRATAVLFGDGGGAAVVGKV-REGYGFRSFVLGA 180
Query: 249 DGEGGRHL-NACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQTI 307
DG G + L +AC+ P + +YMNG+EVF+FAVRV+
Sbjct: 181 DGTGAKELYHACVAPR--------------LPDGTSMKNRLYMNGREVFKFAVRVMNTAT 226
Query: 308 ESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLAL 367
A+EKAGLT I + HQAN RIIDA RL +P ERV N+ YGNTS ASIPLAL
Sbjct: 227 LEAIEKAGLTPEDIRLFVPHQANLRIIDAARERLGLPWERVAVNVDRYGNTSTASIPLAL 286
Query: 368 DEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRWG 401
EAV +G+++ G + FGAGLTW +A+L WG
Sbjct: 287 KEAVDAGRIREGDHVLLVSFGAGLTWAAAVLTWG 320
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 197/346 (56%), Gaps = 30/346 (8%)
Query: 63 LINRGCKL-----VGCGS-AVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESL 116
L+ RG + + C S VP ++N L++++DTSDEWI RTGI RR+++ +E+
Sbjct: 14 LVPRGSHMKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVT-QENT 72
Query: 117 TGLAVEAASRALQMAEVNPEDVDLVLMCTSTPE-DLFGGATQIPKALGCKNNPLAYDITA 175
+ L + A + L+ + ++D +L+ T TP+ ++ A Q+ A+G A+DI+A
Sbjct: 73 SDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAFDISA 131
Query: 176 ACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACD 235
ACSGF+ L A + G ++ LVIGG+ S+ DWTDR + +LFGD A VL++A
Sbjct: 132 ACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEA-- 189
Query: 236 SEDDGLISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYS-SIYMNGKE 294
+E ++ + +DG+ A G N++ F H S ++ M G+
Sbjct: 190 AETPHFLNEKLQADGQ---RWAALTSGYTINES--------PFYQGHKQASKTLQMEGRS 238
Query: 295 VFRFAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLAN 354
+F FA++ V Q I S + T ++D+LLLHQAN RIID +A + + E+ ++N+
Sbjct: 239 IFDFAIKDVSQNILSLV-----TDETVDYLLLHQANVRIIDKIARKTKISREKFLTNMDK 293
Query: 355 YGNTSAASIPLALDEAVRSGKVKPG--HTIAAAGFGAGLTWGSAIL 398
YGNTSAASIP+ LDEAV +G + G + GFG GLTWGS +L
Sbjct: 294 YGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGSLLL 339
>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
Length = 320
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 189/326 (57%), Gaps = 24/326 (7%)
Query: 77 VPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQMAEVNPE 136
VP ++N L++++DTSDEWI RTGI RR+++ +E+ + L + A + L+ +
Sbjct: 13 VPENXVTNHQLSEMMDTSDEWIHSRTGISERRIVT-QENTSDLCHQVAKQLLEKSGKQAS 71
Query: 137 DVDLVLMCTSTPE-DLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAACHIRGGG 195
++D +L+ T TP+ ++ A Q+ A+G A+DI+AACSGF+ L A + G
Sbjct: 72 EIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAFDISAACSGFVYALSMAEKLVLSGR 130
Query: 196 FRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGRH 255
++ LVIGG+ S+ DWTDR + +LFGD A VL++A +E ++ + +DG+
Sbjct: 131 YQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEA--AETPHFLNEKLQADGQ---R 185
Query: 256 LNACIKGNQTNDALGSNGSVLAFPPQHYSYS-SIYMNGKEVFRFAVRVVPQTIESALEKA 314
A G N++ F H S ++ M G+ +F FA++ V Q I S
Sbjct: 186 WTALTSGYTINES--------PFYQGHKQASKTLQMEGRSIFDFAIKDVSQNILSL---- 233
Query: 315 GLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLALDEAVRSG 374
+T ++D+LLLHQA+ RIID +A + + E+ ++N+ YGNTSAASIP+ LDEAV +G
Sbjct: 234 -VTDETVDYLLLHQASVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENG 292
Query: 375 KVKPG--HTIAAAGFGAGLTWGSAIL 398
+ G + GFG GLTWGS +L
Sbjct: 293 TLILGSQQRVVLTGFGGGLTWGSLLL 318
>pdb|3IL6|A Chain A, Structure Of E. Faecalis Fabh In Complex With 2-({4-[(3r,
5s)-3,5-Dimethylpiperidin-1-Yl]-3-Phenoxybenzoyl}amino)
Benzoic Acid
Length = 321
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 189/333 (56%), Gaps = 25/333 (7%)
Query: 71 VGCGS-AVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQ 129
+ C S VP ++N L++++DTS WI RTGI RR+++ +E+ + L + A + L+
Sbjct: 7 ISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRIVT-QENTSDLCHQVAKQLLE 65
Query: 130 MAEVNPEDVDLVLMCTSTPE-DLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
+ ++D +L+ T TP+ ++ A Q+ A+G A+DI+AA SGF+ L A
Sbjct: 66 KSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAFDISAAXSGFVYALSMAE 124
Query: 189 CHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHS 248
+ G ++ LVIGG+ S+ DWTDR + +LFGD A VL++A +E ++ + +
Sbjct: 125 KLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEA--AETPHFLNEKLQA 182
Query: 249 DGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYS-SIYMNGKEVFRFAVRVVPQTI 307
DG+ A G N++ F H S ++ M G+ +F FA++ V Q I
Sbjct: 183 DGQ---RWTALTSGYTINES--------PFYQGHKQASKTLQMEGRSIFDFAIKDVSQNI 231
Query: 308 ESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLAL 367
S + T ++D+LLLHQAN RIID +A + + E+ ++N+ YGNTSAASIP+ L
Sbjct: 232 LSLV-----TDETVDYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILL 286
Query: 368 DEAVRSGKVKPG--HTIAAAGFGAGLTWGSAIL 398
DEAV +G + G + GFG GLTWGS +L
Sbjct: 287 DEAVENGTLILGSQQRVVLTGFGGGLTWGSLLL 319
>pdb|2X3E|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh From Pseudomonas Aeruginosa Pao1
pdb|2X3E|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh From Pseudomonas Aeruginosa Pao1
Length = 331
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 31/343 (9%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVL----SGKESLTGLAV 121
R + G GS +P +SND LA +DTSD WIS RTG+R R + SG +L +
Sbjct: 4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIAGDLGSGDLALRAASA 63
Query: 122 EAASRALQMAEVNPEDVDLVLMCTSTPEDLF---GGATQIPKALGCKNNPLAYDITAACS 178
AS L E VD V++ TST + F A ++ LG LA+D++AA +
Sbjct: 64 ALASAGL-------ERVDAVVLATSTGD--FCCPATAPRVAARLGLVG-ALAFDLSAAAT 113
Query: 179 GFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSED 238
GF+ GL S I G + L++G D S D DR + LFGD AGAV+++A D+E+
Sbjct: 114 GFVYGLASVGSLISAGLADSALLVGVDTFSHTLDPADRSTRALFGDGAGAVVLRAGDAEE 173
Query: 239 DG-LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFR 297
+G L++FD+ SDG H + + A S+G Q +Y M+GK VF
Sbjct: 174 EGALLAFDLGSDG----HQFDLLMTPAVSRAERSSG-------QASNY--FRMDGKAVFG 220
Query: 298 FAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGN 357
AV + ++ L++ G S + L+ HQAN RI+ AVA++LD+P+ERV+SN+A GN
Sbjct: 221 QAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVADQLDLPVERVVSNIAEVGN 280
Query: 358 TSAASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
T AASIPLAL +R G ++ G + GFGAGLTWGS LRW
Sbjct: 281 TVAASIPLALAHGLRQGILRDGGNMVLTGFGAGLTWGSVALRW 323
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 185/341 (54%), Gaps = 26/341 (7%)
Query: 65 NRGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAA 124
R +++G GS P ++SN ++ +D+++EWI RTGIR+RR+ E++ + V A+
Sbjct: 9 RRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAAS 68
Query: 125 SRALQMAEVNPEDVDLVLMCT-----STPEDLFGGATQIPKALGCKNNPLAYDITAACSG 179
RAL+ A V+P ++DLV++ T TP + I LG +N +D++AAC+G
Sbjct: 69 RRALEHAGVDPAEIDLVVVSTMTNFVHTPPL----SVAIAHELGA-DNAGGFDLSAACAG 123
Query: 180 FLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDD 239
F L AA + GG R+VLV+ + ++ D DR LFGD AGA +V D
Sbjct: 124 FCHALSIAADAVESGGSRHVLVVATERMTDVIDLADRSLSFLFGDGAGAAVVGPSDVPGI 183
Query: 240 GLISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFA 299
G + + G G H+++ + ++G ++ M+GK VFR+A
Sbjct: 184 GPVVRGIDGTGLGSLHMSSSWDQYVEDPSVG--------------RPALVMDGKRVFRWA 229
Query: 300 VRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLA-NYGNT 358
V V ALE AGLT+ + + HQAN RIID + +RL VP V+S A + GNT
Sbjct: 230 VADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSRDAEDTGNT 289
Query: 359 SAASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTW-GSAIL 398
S+AS+ LALD VRSG V G GFGAGL++ G A+L
Sbjct: 290 SSASVALALDRLVRSGAVPGGGPALMIGFGAGLSYAGQALL 330
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 180/333 (54%), Gaps = 13/333 (3%)
Query: 70 LVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQ 129
L G G ++P Q+SN DL ++TSDE+I RTG+R R + +++++ L V AA +A++
Sbjct: 28 LAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIE 87
Query: 130 MAEVNPEDVDLVLMCTSTPEDL-FGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
A + PED+DL+L+ T +P+ A I LG ++ P+ DI A CSG L GL A
Sbjct: 88 AAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGLRHIPV-LDIRAQCSGLLYGLQMAR 146
Query: 189 CHIRGGGFRNVLVIGGDALSRFTDWTDRGS--CILFGDAAGAVLVQACDSEDDGLISFDV 246
I G R+VLV+ G+ LS+ D +DRG IL GD AGAV+V A +S +DGL+ +
Sbjct: 147 GQILAGLARHVLVVCGEVLSKRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRL 206
Query: 247 HSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQT 306
+DG L G+ + L N VL M G+ +F A + + +
Sbjct: 207 GADGNYFDLLMTAAPGSASPTFLDEN--VL-----REGGGEFLMRGRPMFEHASQTLVRI 259
Query: 307 IESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLA 366
L LT+ ID ++ HQ N RI+DAV +L +P + + GN ++AS P+
Sbjct: 260 AGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDRLGNMASASTPVT 319
Query: 367 LDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
L A+ ++PG + +G+G TWG+A+ R
Sbjct: 320 L--AMFWPDIQPGQRVLVLTYGSGATWGAALYR 350
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 179/344 (52%), Gaps = 21/344 (6%)
Query: 68 CKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRA 127
++V G+ P + N+DL +D+SDEWI RTGI R+ + +E++ +AV AA A
Sbjct: 14 SRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREA 73
Query: 128 LQMAEVNPEDVDLVLMCTST-PEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVS 186
L+ A + D+D V++ T T P A + +G P AYD++AAC+G+ G+
Sbjct: 74 LERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAP-AYDVSAACAGYCYGVAQ 132
Query: 187 AACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDV 246
A +R G R+VLV+G + LS D TDR L GD AGAV+V A D + G+
Sbjct: 133 ADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASD--EPGISPSVW 190
Query: 247 HSDGEGGRHL----------NACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVF 296
SDGE + +A T DA G+ + + ++ +G VF
Sbjct: 191 GSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGA------EGMLWPTLRQDGPSVF 244
Query: 297 RFAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVIS-NLANY 355
R+AV + + AL+ AG+ + + HQAN RIID A +L +P V++ ++A+
Sbjct: 245 RWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADA 304
Query: 356 GNTSAASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
GNTSAASIPLA+ + G GFGAGL +G+ ++R
Sbjct: 305 GNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVR 348
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 179/333 (53%), Gaps = 13/333 (3%)
Query: 70 LVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQ 129
L G G ++P Q+SN DL ++TSDE+I RTG+R R + +++++ L V AA +A++
Sbjct: 28 LAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIE 87
Query: 130 MAEVNPEDVDLVLMCTSTPEDL-FGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
A + PED+DL+L+ T +P+ A I LG ++ P+ DI A SG L GL A
Sbjct: 88 AAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGLRHIPV-LDIRAQASGLLYGLQMAR 146
Query: 189 CHIRGGGFRNVLVIGGDALSRFTDWTDRGS--CILFGDAAGAVLVQACDSEDDGLISFDV 246
I G R+VLV+ G+ LS+ D +DRG IL GD AGAV+V A +S +DGL+ +
Sbjct: 147 GQILAGLARHVLVVCGEVLSKRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRL 206
Query: 247 HSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQT 306
+DG L G+ + L N VL M G+ +F A + + +
Sbjct: 207 GADGNYFDLLMTAAPGSASPTFLDEN--VL-----REGGGEFLMRGRPMFEHASQTLVRI 259
Query: 307 IESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLA 366
L LT+ ID ++ HQ N RI+DAV +L +P + + GN ++AS P+
Sbjct: 260 AGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDRLGNMASASTPVT 319
Query: 367 LDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
L A+ ++PG + +G+G TWG+A+ R
Sbjct: 320 L--AMFWPDIQPGQRVLVLTYGSGATWGAALYR 350
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 179/333 (53%), Gaps = 13/333 (3%)
Query: 70 LVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQ 129
L G G ++P Q+SN DL ++TSDE+I RTG+R R + +++++ L V AA +A++
Sbjct: 28 LAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIE 87
Query: 130 MAEVNPEDVDLVLMCTSTPEDL-FGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
A + PED+DL+L+ T +P+ A I LG ++ P+ DI A SG L GL A
Sbjct: 88 AAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGLRHIPV-LDIRAQXSGLLYGLQMAR 146
Query: 189 CHIRGGGFRNVLVIGGDALSRFTDWTDRGS--CILFGDAAGAVLVQACDSEDDGLISFDV 246
I G R+VLV+ G+ LS+ D +DRG IL GD AGAV+V A +S +DGL+ +
Sbjct: 147 GQILAGLARHVLVVCGEVLSKRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRL 206
Query: 247 HSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQT 306
+DG L G+ + L N VL M G+ +F A + + +
Sbjct: 207 GADGNYFDLLMTAAPGSASPTFLDEN--VL-----REGGGEFLMRGRPMFEHASQTLVRI 259
Query: 307 IESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLA 366
L LT+ ID ++ HQ N RI+DAV +L +P + + GN ++AS P+
Sbjct: 260 AGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDRLGNMASASTPVT 319
Query: 367 LDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
L A+ ++PG + +G+G TWG+A+ R
Sbjct: 320 L--AMFWPDIQPGQRVLVLTYGSGATWGAALYR 350
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 181/340 (53%), Gaps = 25/340 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDEWI RTGI+ RR + ES +A EA
Sbjct: 11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACR 70
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A C+GF
Sbjct: 71 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGCAGF 125
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D DRG+C +F D A AV+V ++ G
Sbjct: 126 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVV--GETPFQG 183
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 184 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 231
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQAN RI + + L + + V++N + + GNTS
Sbjct: 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTS 291
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 292 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 181/340 (53%), Gaps = 25/340 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDEWI RTGI+ RR + ES +A EA
Sbjct: 31 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACR 90
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A C+GF
Sbjct: 91 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGCAGF 145
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D DRG+C +F D A AV+V ++ G
Sbjct: 146 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVV--GETPFQG 203
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 204 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 251
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQAN RI + + L + + V++N + + GNTS
Sbjct: 252 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTS 311
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 312 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 351
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 25/340 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDEWI RTGI+ RR + ES +A EA
Sbjct: 11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACR 70
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A C+GF
Sbjct: 71 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGCAGF 125
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D DRG+C +F D A AV+V ++ G
Sbjct: 126 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVV--GETPFQG 183
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 184 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 231
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQ N RI + + L + + V++N + + GNTS
Sbjct: 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQFNSRINELLVKNLQLRPDAVVANDIEHTGNTS 291
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 292 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 25/340 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDEWI RTGI+ RR + ES +A EA
Sbjct: 11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACR 70
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A +GF
Sbjct: 71 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGAAGF 125
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D DRG+C +F D A AV+V ++ G
Sbjct: 126 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVV--GETPFQG 183
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 184 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 231
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQAN RI + + L + + V++N + + GNTS
Sbjct: 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTS 291
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 292 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 25/340 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDEWI TGI+ RR + ES +A EA
Sbjct: 32 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTATGIKTRRFAADDESAASMATEACR 91
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A C+GF
Sbjct: 92 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGCAGF 146
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D D G+C +F D A AV+V ++ G
Sbjct: 147 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAGNCFIFADGAAAVVVG--ETPFQG 204
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 205 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 252
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQAN RI + + L + + V++N + + GNTS
Sbjct: 253 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTS 312
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 313 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 179/341 (52%), Gaps = 25/341 (7%)
Query: 66 RGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLSGKESLTGLAVEAAS 125
R L+ G+ P ++ND++ + +D+SDE I RTGI+ RR + ES +A EA
Sbjct: 32 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEAIYTRTGIKTRRFAADDESAASMATEACR 91
Query: 126 RALQMAEVNPEDVDLVLMCTS-----TPEDLFGGATQIPKALGCKNNPLAYDITAACSGF 180
RAL A ++ D+D V++ T+ TP A + +LG K L +D++A C+GF
Sbjct: 92 RALSNAGLSAADIDGVIVTTNTHFLQTPP----AAPMVAASLGAKGI-LGFDLSAGCAGF 146
Query: 181 LLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDG 240
L +AA IRGGG +LV+G + LS D D G+C +F D A AV+V ++ G
Sbjct: 147 GYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAGNCFIFADGAAAVVVG--ETPFQG 204
Query: 241 LISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV 300
+ SDGE + I + A +G P+ + + + G VFR+A
Sbjct: 205 IGPTVAGSDGEQADAIRQDI--DWITFAQNPSG------PRPF----VRLEGPAVFRWAA 252
Query: 301 RVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN-LANYGNTS 359
+ A++ AG+ ID + HQAN RI + + L + + V++N + + GNTS
Sbjct: 253 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTS 312
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
AASIPLA+ E + +G KPG G+GAGL++ + ++R
Sbjct: 313 AASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRM 353
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 163/333 (48%), Gaps = 16/333 (4%)
Query: 77 VPTLQISNDDLAKIV-DTSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQMAEVNP 135
+P ++ND LA++ D E I +TGIR RR+ + +E+ LA EAA + V
Sbjct: 40 LPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRIAAPRETAADLAYEAARKLFAQGAVGA 99
Query: 136 EDVDLVLMCTSTPEDLF-GGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAACHIRGG 194
+ VD V++CT P+ + A + LG + A D+ CSG++ GL A + G
Sbjct: 100 DQVDFVILCTQAPDYVLPTSACMLQHRLGIPTHAGALDVNLGCSGYVYGLSLAKGLVETG 159
Query: 195 GFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGR 254
R VL++ D S++ D+ LFGD A A V A E + + F +DG G
Sbjct: 160 AARCVLLLTADTYSKYLHPLDKSVRTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAP 219
Query: 255 HLNACIKGNQTNDALGSNGSVLAFPPQHYSYS-------SIYMNGKEVFRFAVRVVPQTI 307
N +K + ++ + +H S +YMNG EV F++ VP+
Sbjct: 220 --NLIVKAGLFREPKSADSAR-----EHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 308 ESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLAL 367
+ L AG +ID +LHQAN+ ++DA+ ++ +P + + + GNT ++++PLAL
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALRKKMKIPEHKFPVLMEHCGNTVSSTLPLAL 332
Query: 368 DEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRW 400
+ +G + G + GFG G +W ++ +
Sbjct: 333 ETMRANGTLARGMRLMLLGFGVGYSWAGCLVNF 365
>pdb|4EFI|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase From Burkholderia Xenovorans Lb400
Length = 354
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 156/342 (45%), Gaps = 10/342 (2%)
Query: 62 RLINRGCKLVGCGSAVPTLQISNDDLAKIVDTSDEWISVRT-GIRNRRVLSGKESLTGLA 120
L +G ++ G S VP+ Q+ ND + D S V+ G+ RR + S L
Sbjct: 11 ELRTQGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLC 70
Query: 121 VEAASRALQMAEVNPEDVDLVLMCTSTPE-DLFGGATQIPKALGCKNNPLAYDITAACSG 179
+A + L + +D ++ + TP L A + L + LA DI CSG
Sbjct: 71 RKAGEKLLAGLGWQADSIDALIFVSQTPNYRLPATAFVLQAELDLPASCLALDINLGCSG 130
Query: 180 FLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQACDSEDD 239
+ L I+ G + VL+ GD +S+ D TDR + +LFGDA ++ S D
Sbjct: 131 YPQALWLGMNLIQTGAAKRVLLAVGDTISKMIDPTDRSTSLLFGDAGTMTALET--SNGD 188
Query: 240 GLISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFA 299
F + +DG+G R+L G + DA P ++M+G E+F F
Sbjct: 189 AAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSP------ECLFMDGGEIFNFT 242
Query: 300 VRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTS 359
+ VP+ + L+ AG S D L HQAN ++ +A + +P ERV N+ YGNTS
Sbjct: 243 LNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLAKKAGLPAERVPVNIGEYGNTS 302
Query: 360 AASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILRWG 401
ASIPL + ++ + + GFG G +W SA L G
Sbjct: 303 CASIPLLITTELKDRLKEETLQLGMFGFGVGYSWASAALAVG 344
>pdb|3LED|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
pdb|3LED|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
Length = 392
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 146/352 (41%), Gaps = 44/352 (12%)
Query: 75 SAVPTLQISNDDLAKIVDTSDEWISVRTGIRNRRVLS-----------------GKESLT 117
+A +I ++ + +S E+I +GI++R V++ + L+
Sbjct: 56 NAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDPDVXRPIIPERSNDELS 115
Query: 118 GLA---VEAASRALQMAEVNPEDVDLVL-MCTSTPEDLFGGATQIPKALGCKNNPLAYDI 173
LA V AA +A++ E + VL C++ A ++ ALG A+D
Sbjct: 116 ILAEXAVTAAEQAIERWGKPRERIGAVLCACSNXQRAYPAXAIEVQNALGLGG--FAFDX 173
Query: 174 TAACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCILFGDAAGAVLVQA 233
ACS GL +AA + GG VL + + S ++ DR S +FGD A A +V+
Sbjct: 174 NVACSSATFGLKTAADFVGGGSVDAVLXVNPEICSGHLNFRDRDSHFIFGDVATAAIVER 233
Query: 234 CDSEDDGLISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVL--AFPPQHYSYSSIYM- 290
D D +GG + Q ++ + +N L A+P +++
Sbjct: 234 AD-------------DAQGGWSILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQ 280
Query: 291 NGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRL---DVPMER 347
G++VF+ V +V + I + G+ + LHQAN + + ++ D +
Sbjct: 281 QGRKVFKEVVPLVSEXIIEHAREIGIDPHGLKRXWLHQANINXNEIIGRKVLGRDPTRDE 340
Query: 348 VISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
+ L +Y NTS+A +A + G FGAG + G+ ++
Sbjct: 341 NVIILDDYANTSSAGSIIAFHK--HQDDXAQGDLGLICSFGAGYSAGTVFVQ 390
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 126/315 (40%), Gaps = 41/315 (13%)
Query: 103 GIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQ--IPK 160
GI RR+ + A +AA +AL A + E + L L+ TS D +T +
Sbjct: 55 GIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGL-LINTSVSRDYLEPSTASIVSG 113
Query: 161 ALGCKNNPLAYDITAACSGFLLGLVSAACHIRGGGFRNVLVIGGDA--------LSRFT- 211
LG ++ + +D+ AC F+ G+ AA + G LV+ G+ L R T
Sbjct: 114 NLGVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTS 173
Query: 212 ------DWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGRHLNACIKGNQT 265
++ + + + G A A+++ + D R+ KG T
Sbjct: 174 PDVTEEEFRNELAALTLGCGAAAMVMARSELVPDA------------PRY-----KGGVT 216
Query: 266 NDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLL 325
A N + + + + + +++ +T +A + G + +D +
Sbjct: 217 RSATEWNKLCRG------NLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFV 270
Query: 326 LHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIAAA 385
+HQ ++ A + +V++ +GN AS+P+ L + G++K G IA
Sbjct: 271 IHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALL 330
Query: 386 GFGAGLTWGSAILRW 400
G G+GL A + W
Sbjct: 331 GIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 126/315 (40%), Gaps = 41/315 (13%)
Query: 103 GIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQ--IPK 160
GI RR+ + A +AA +AL A + E + L L+ TS D +T +
Sbjct: 54 GIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGL-LINTSVSRDYLEPSTASIVSG 112
Query: 161 ALGCKNNPLAYDITAACSGFLLGLVSAACHIRGGGFRNVLVIGGDA--------LSRFT- 211
LG ++ + +D+ AC F+ G+ AA + G LV+ G+ L R T
Sbjct: 113 NLGVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTS 172
Query: 212 ------DWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGRHLNACIKGNQT 265
++ + + + G A A+++ + D R+ KG T
Sbjct: 173 PDVTEEEFRNELAALTLGCGAAAMVMARSELVPDA------------PRY-----KGGVT 215
Query: 266 NDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLL 325
A N + + + + + +++ +T +A + G + +D +
Sbjct: 216 RSATEWNKLCRG------NLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFV 269
Query: 326 LHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIAAA 385
+HQ ++ A + +V++ +GN AS+P+ L + G++K G IA
Sbjct: 270 IHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALL 329
Query: 386 GFGAGLTWGSAILRW 400
G G+GL A + W
Sbjct: 330 GIGSGLNCSMAEVVW 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 126/315 (40%), Gaps = 41/315 (13%)
Query: 103 GIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQ--IPK 160
GI RR+ + A +AA +AL A + E + L L+ TS D +T +
Sbjct: 48 GIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGL-LVNTSVSRDYLEPSTASIVSG 106
Query: 161 ALGCKNNPLAYDITAACSGFLLGLVSAACHIRGGGFRNVLVIGGDA--------LSRFT- 211
LG ++ + +D+ AC F+ G+ AA + G LV+ G+ L R T
Sbjct: 107 NLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTS 166
Query: 212 ------DWTDRGSCILFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGRHLNACIKGNQT 265
++ + + + G A A+++ + D R+ KG T
Sbjct: 167 PDVTEEEFRNELAALTLGCGAAAMVMARTELVPDA------------PRY-----KGGVT 209
Query: 266 NDALGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLL 325
A N + + + + + +++ +T +A + G + +D +
Sbjct: 210 RSATEWNKLCRG------NLDRMVTDTRLLLIEGIKLAQKTFLAARQVLGWAVDELDQFV 263
Query: 326 LHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIAAA 385
+HQ ++ A + +V++ +GN AS+P+ L + G++K G IA
Sbjct: 264 IHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALL 323
Query: 386 GFGAGLTWGSAILRW 400
G G+GL A + W
Sbjct: 324 GIGSGLNCSMAEVVW 338
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 269 LGSNGSVLAFPPQHYSYSSIYMNGKEVFRFAV-RVVPQTIES---ALEK----AGLTMSS 320
L NGS L + + + G F F + + VP T+E AL++ G S
Sbjct: 215 LERNGSYLIPKTEDWIMYDVKATG---FHFLLDKRVPATMEPLAPALKELAGEHGWDASD 271
Query: 321 IDWLLLHQANQRIIDAVANRLDV-PMERVIS--NLANYGNTSAASIPLALDEAVRSGKVK 377
+D+ ++H RI+D ++ L+V P S L YGN ++A + AL G V+
Sbjct: 272 LDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVE 331
Query: 378 PGHTIAAAGFGAGLT-------WGSAILRWG 401
G AGFG G+T W +A +R G
Sbjct: 332 EGARGLLAGFGPGITAEMSLGCWQTADVRRG 362
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 302 VVPQTIESALEKA----GLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN---LA 353
++ Q I AL KA G++ +SI W+ H + I+D V ++++ E++ + L+
Sbjct: 275 IISQNINDALSKAFDPLGISDYNSIFWIA-HPGGRAILDQVEEKVNLKPEKMKATRDVLS 333
Query: 354 NYGNTSAASIPLALD----EAVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
NYGN S+A + +D +++ +G G + GFG GLT + +LR
Sbjct: 334 NYGNMSSACVFFIMDLMRKKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLR 386
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 62/312 (19%)
Query: 119 LAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCK---NNPLAYDITA 175
L EAA +A++ + +++CT++ D+ G Q+ K LG + + Y A
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGA 164
Query: 176 ACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSC----------ILFGDA 225
G +L L G VLV+ S T T RG LFGD
Sbjct: 165 FAGGTVLRLAKDLAENNKGA--RVLVV----CSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
Query: 226 AGAVLVQACDSEDDGLISFD-------VHSDGEGGRHLNACIKGNQTNDALGSNGSVLAF 278
A A++V + + F+ + D EG I G+ L
Sbjct: 219 AAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGA------IDGHLREAGL--------- 263
Query: 279 PPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAV 337
+ K+V + + + + A E G++ +SI W+ H I+D V
Sbjct: 264 ---------TFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQV 313
Query: 338 ANRLDVPMERVISN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGF 387
+L + E++ + L+ YGN S+A + LDE + ++G G + GF
Sbjct: 314 EQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGF 373
Query: 388 GAGLTWGSAILR 399
G GLT + +LR
Sbjct: 374 GPGLTIETVVLR 385
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 327
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
++V + + E AL G+T +S+ W ++H + I+D V +L++ +++ ++
Sbjct: 274 RDVPLMVAKNIENAAEKALSPLGITDWNSVFW-MVHPGGRAILDQVERKLNLKEDKLRAS 332
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTIAAA---GFGAGLTWGSAILR 399
L+ YGN +A + +DE ++ GK G + GFG G+T + +LR
Sbjct: 333 RHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLR 390
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 62/312 (19%)
Query: 119 LAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCK---NNPLAYDITA 175
L EAA +A++ + +++CT++ D+ G Q+ K LG + + Y +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGS 164
Query: 176 ACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSC----------ILFGDA 225
G +L L G VLV+ S T T RG LFGD
Sbjct: 165 FAGGTVLRLAKDLAENNKGA--RVLVV----CSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
Query: 226 AGAVLVQACDSEDDGLISFD-------VHSDGEGGRHLNACIKGNQTNDALGSNGSVLAF 278
A A++V + + F+ + D EG I G+ L
Sbjct: 219 AAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGA------IDGHLREAGL--------- 263
Query: 279 PPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAV 337
+ K+V + + + + A E G++ +SI W+ H I+D V
Sbjct: 264 ---------TFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQV 313
Query: 338 ANRLDVPMERVISN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGF 387
+L + E++ + L+ YGN S+A + LDE + ++G G + GF
Sbjct: 314 EQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGF 373
Query: 388 GAGLTWGSAILR 399
G GLT + +LR
Sbjct: 374 GPGLTIETVVLR 385
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 50/306 (16%)
Query: 119 LAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCK---NNPLAYDITA 175
L EAA +A++ + +++CT++ D+ G Q+ K LG + + Y
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGX 164
Query: 176 ACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSC----------ILFGDA 225
G +L L G VLV+ S T T RG LFGD
Sbjct: 165 FAGGTVLRLAKDLAENNKGA--RVLVV----CSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
Query: 226 AGAVLVQACDSEDDGLISFDVHSDGEGGRHLNACIKGNQTNDALGSNGSVLAFPPQHYSY 285
A A++V + D + + + + + QT A S G++ A H
Sbjct: 219 AAALIVGS-----DPVPEIE--------KPIFEMVWTAQTI-APDSEGAIDA----HLRE 260
Query: 286 SSIYMNG-KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDV 343
+ + + K+V + + + + A E G++ +SI W+ H I+D V +L +
Sbjct: 261 AGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLAL 319
Query: 344 PMERVISN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTW 393
E++ + L+ YGN S+A + LDE + ++G G + GFG GLT
Sbjct: 320 KPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTI 379
Query: 394 GSAILR 399
+ +LR
Sbjct: 380 ETVVLR 385
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 268 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 326
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 327 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 384
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 327
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 121/312 (38%), Gaps = 62/312 (19%)
Query: 119 LAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALGCK---NNPLAYDITA 175
L EAA +A++ + +++CT++ D+ G Q+ K LG + + Y
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGX 164
Query: 176 ACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSC----------ILFGDA 225
G +L L G VLV+ S T T RG LFGD
Sbjct: 165 FAGGTVLRLAKDLAENNKGA--RVLVV----CSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
Query: 226 AGAVLVQACDSEDDGLISFD-------VHSDGEGGRHLNACIKGNQTNDALGSNGSVLAF 278
A A++V + + F+ + D EG L+ G L F
Sbjct: 219 AAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDLHLREAG-------------LTF 265
Query: 279 PPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAV 337
H K+V + + + + A E G++ +SI W+ H I+D V
Sbjct: 266 ---HLL--------KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQV 313
Query: 338 ANRLDVPMERVISN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGF 387
+L + E++ + L+ YGN S+A + LDE + ++G G + GF
Sbjct: 314 EQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGF 373
Query: 388 GAGLTWGSAILR 399
G GLT + +LR
Sbjct: 374 GPGLTIETVVLR 385
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 327
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 327
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ H I+D V +L + E++ +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNAT 327
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 303 VPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN---LANYGNT 358
+ + + A E G++ +SI W+ H I+D V +L + E++ + L+ YGN
Sbjct: 283 ITKALVEAFEPLGISDYNSIFWIA-HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNM 341
Query: 359 SAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 342 SSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 389
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 294 EVFRFAVRVVPQTIESALEKAGLTMSSIDW----LLLHQANQRIIDAVANRLDVPMERVI 349
+++ ++ I++ L A ++ DW + H I+D V ++ + E++
Sbjct: 262 HLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLK 321
Query: 350 SN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L +YGN S+A++ +DE ++ +G+ G + GFG G+T + +LR
Sbjct: 322 VTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLR 381
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 294 EVFRFAVRVVPQTIESALEKAGLTMSSIDW----LLLHQANQRIIDAVANRLDVPMERVI 349
+++ ++ I++ L A ++ DW + H I+D V ++ + E++
Sbjct: 262 HLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLK 321
Query: 350 SN---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L +YGN S+A++ +DE ++ +G+ G + GFG G+T + +LR
Sbjct: 322 VTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLR 381
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 302 VVPQTIESALEKAGLTMSSIDWLLL----HQANQRIIDAVANRLDVPMERVISN---LAN 354
++ + +E L +A + DW L H I+DAV +L++ +++ + L+
Sbjct: 861 LISENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSE 920
Query: 355 YGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
YGN S+A + LDE +++ + G + GFG GLT + +L
Sbjct: 921 YGNMSSACVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLH 972
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 302 VVPQTIESALEKAGLTMSSIDW----LLLHQANQRIIDAVANRLDVPMERVISN---LAN 354
++ IE+ + +A DW ++H + I+D V +L++ ++I ++
Sbjct: 297 LISANIENCMVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSE 356
Query: 355 YGNTSAASIPLALDE----AVRSGKVKPGHTIAAA---GFGAGLTWGSAILR 399
YGN S+A + LD+ ++++G G + GFG GLT + +L+
Sbjct: 357 YGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLK 408
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 302 VVPQTIESALEKAGLTMSSIDW----LLLHQANQRIIDAVANRLDVPMERVISN---LAN 354
++ IE+ + +A DW ++H + I+D V +L++ ++I ++
Sbjct: 281 LISANIENCMVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSE 340
Query: 355 YGNTSAASIPLALDE----AVRSGKVKPGHTIAAA---GFGAGLTWGSAILR 399
YGN S+A + LD+ ++++G G + GFG GLT + +L+
Sbjct: 341 YGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLK 392
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 307 IESALEKAGLTMSSID-----WLLLHQANQRIIDAVANRLDVPMERVISN---LANYGNT 358
+++ L+KA L S+ L+H + I+ + N L + ++ + YGN
Sbjct: 273 VDTLLDKAKLQTSTAISAKDCEFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNM 332
Query: 359 SAASIPLALDEAVRSGKVKPGHTIAAAGFGAGLTWGSAILR 399
S+AS+ +D A R K P ++I+ A FG GL + L+
Sbjct: 333 SSASVIFVMDHA-RKSKSLPTYSISLA-FGPGLAFEGCFLK 371
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 221 LFGDAAGAVLVQACDSEDDGLISFDVHSDGEGG-RHLNACIKGNQTNDALGSNGSVLAFP 279
LFGD A A++V + + F++H GE + I G+ L
Sbjct: 227 LFGDGAAALIVGSDPVPQEEKPLFEIHWAGEAVLPDSDGAINGHLREAGL---------- 276
Query: 280 PQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRIIDAVAN 339
I+ K+V + + + + LE + + +H I+D +
Sbjct: 277 --------IFHLLKDVPGLISKNIDKVLAEPLEYVHFPSYNDMFWAVHPGGPAILDQIEA 328
Query: 340 RLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGKVKPGHTIAAA-------GFGA 389
+L + +++ ++ LA+YGN S+AS+ LD+ ++ + T GFG
Sbjct: 329 KLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIGFGP 388
Query: 390 GLTWGSAILR 399
GLT + +LR
Sbjct: 389 GLTVETLLLR 398
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 293 KEVFRFAVRVVPQTIESALEKAGLT-MSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
K+V + + + + A E G++ +SI W+ I+D V +L + E++ +
Sbjct: 268 KDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA-QPGGPAILDQVEQKLALKPEKMNAT 326
Query: 352 ---LANYGNTSAASIPLALDE----AVRSGKVKPGHTI---AAAGFGAGLTWGSAILR 399
L+ YGN S+A + LDE + ++G G + GFG GLT + +LR
Sbjct: 327 REVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 384
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 319 SSIDWLLLHQANQRIIDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGK 375
+S+ W+ H + I+D V +L + E+ + L +YGN +AS+ LDE R
Sbjct: 312 NSLFWIP-HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSA 370
Query: 376 VKPGHTIAAAGFGAGLTWG 394
K T +G GL WG
Sbjct: 371 AKGLET-----YGEGLEWG 384
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 319 SSIDWLLLHQANQRIIDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGK 375
+S+ W+ H + I+D V +L + E+ + L +YGN +AS+ LDE R
Sbjct: 312 NSLFWIP-HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSA 370
Query: 376 VKPGHTIAAAGFGAGLTWG 394
K T +G GL WG
Sbjct: 371 AKGLET-----YGEGLEWG 384
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 305 QTIESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISNLANYGNTSAASIP 364
+ I ALE AG+ +D++ H R+ D P+E V + L+ YG P
Sbjct: 312 RVIRRALENAGVRAGDVDYVEAHGTGTRLGD--------PIE-VHALLSTYGAERDPDDP 362
Query: 365 LALDEAVRSGKVKP--GHTIAAAGFGAGLTWGSAILRWG 401
L + G VK GHT AAAG AG+ LR G
Sbjct: 363 LWI------GSVKSNIGHTQAAAGV-AGVXKAVLALRHG 394
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 97 WISVRTGIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLF 152
++ + +G+++ + +SG++ L L E A +P+ VD +L CT LF
Sbjct: 197 FMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 307 IESALEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERV------ISNLANYGNTSA 360
I AL+KAGLT+S +D +++A +L +P E+V ++ G T A
Sbjct: 319 IPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGA 378
Query: 361 ASIPLALDEAVRSGKVKPGHTIAAAGFGAG 390
+ L+E R GK G G G G
Sbjct: 379 RQVITLLNELKRRGKRAYGVVSMCIGTGMG 408
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 113/303 (37%), Gaps = 36/303 (11%)
Query: 104 IRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLFGGATQIPKALG 163
IR+R L E LAV+ + RAL ++ L+++ TST G I K LG
Sbjct: 102 IRDRMHLF-YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELG 160
Query: 164 CKNNPLAYDIT-AACSGFLLGLVSAACHIRGGGFRNVLVIGGDALSRFTDWTDRGSCI-- 220
+ + C+ + L +A ++R LV+ + S + D + +
Sbjct: 161 LSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELFSVNAVFADDINDVVI 220
Query: 221 --LFGDAAGAVLVQACDSEDDGLISFDVHSDGEGGR-----HLNACIKGNQTNDALGSNG 273
LFGD A+++ A V E G+ + + + LG N
Sbjct: 221 HSLFGDGCAALVIGAS----------QVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVN- 269
Query: 274 SVLAFPPQHYSYSSIYMNGKEVFRFAVRVVPQTIESALEKAGLTMSSIDWLLLHQANQRI 333
H + + F+ V P E L GL +S ID +H +I
Sbjct: 270 --------HNGITCELSENLPGYIFS-GVAPVVTE-MLWDNGLQISDIDLWAIHPGGPKI 319
Query: 334 IDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGK-VKPGHTIAAAGFGA 389
I+ L + E + LA +GN + S+ L+ V+ + K T A FG
Sbjct: 320 IEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGP 379
Query: 390 GLT 392
G+T
Sbjct: 380 GVT 382
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 97 WISVRTGIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDLF 152
++ + +G+++ + +SG++ L L E A +P+ VD +L CT LF
Sbjct: 214 FMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 269
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 326 LHQANQRIIDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGKVKPGHTI 382
+H I+D V +L++ + ++ L++YGN S+AS+ LD VR ++ +
Sbjct: 320 VHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDR-VRERSLESNKST 378
Query: 383 AAAGFGAGLTWGSAI 397
FG G WG I
Sbjct: 379 ----FGEGSEWGFLI 389
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 120 AVEAASRALQMAEVNPEDVDLVLMC-TSTPEDLFGGATQIPKALGCKNNPLAYDITAACS 178
A++A AL+ AE++PE V V TSTP + G + I LG K P++ T + +
Sbjct: 299 AIKAIKLALEEAEISPEQVAYVNAAGTSTPANEKGESGAIVAVLG-KEVPVSS--TKSFT 355
Query: 179 GFLLGLVSA 187
G LLG A
Sbjct: 356 GHLLGAAGA 364
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 120 AVEAASRALQMAEVNPEDVDLV-LMCTSTPEDLFGGATQIPKALGCKNNPLAYDITAACS 178
A++A AL+ AE++PE V V TSTP + G + I LG K P++ T + +
Sbjct: 298 AIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLG-KEVPVSS--TKSFT 354
Query: 179 GFLLGLVSA 187
G LLG A
Sbjct: 355 GHLLGAAGA 363
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 93 TSDEWISVRTGIRNRRVLSGKESLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPEDL 151
T +++I V +GI ++ + E + ++ + +M V D D+V+M T+ P L
Sbjct: 190 TENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRAL 248
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 130 MAEVNPEDVDLVLMCT-STPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
+ + + E +D+V++ T S+ ++ A + + +G + +++I AC G GL A
Sbjct: 68 LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQLAK 127
Query: 189 CHIRGGGFRNVLVIGGD 205
H+ + VLV+ D
Sbjct: 128 NHVALHPDKKVLVVAAD 144
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 130 MAEVNPEDVDLVLMCT-STPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
+ + + E +D+V++ T S+ ++ A + + +G + +++I AC G GL A
Sbjct: 63 LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQLAK 122
Query: 189 CHIRGGGFRNVLVIGGD 205
H+ + VLV+ D
Sbjct: 123 NHVALHPDKKVLVVAAD 139
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 120 AVEAASRALQMAEVNPEDVDLV-LMCTSTPEDLFGGATQIPKALGCKNNPLAYDITAACS 178
A++A AL+ AE++PE V V TSTP + G + I LG K P++ T + +
Sbjct: 298 AIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLG-KAVPVSS--TKSFT 354
Query: 179 GFLLGLVSA 187
G LLG A
Sbjct: 355 GHLLGAAGA 363
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 134 NPEDVDLVLMCTSTPEDL-FGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAACHIR 192
+ E +D+V++ T + D GA + LG + ++++ AC L A H+
Sbjct: 101 DKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEACYSATAALNYAKLHVE 160
Query: 193 GGGFRNVLVIGGD 205
VLV+ D
Sbjct: 161 KHPDTRVLVLASD 173
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 18/87 (20%)
Query: 326 LHQANQRIIDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGKVKPGHTI 382
+H + I+D V L + ++ ++ L++YGN S A++ ALDE R K
Sbjct: 329 VHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRK-----EA 383
Query: 383 AAAG----------FGAGLTWGSAILR 399
AAAG FG G+T + +L
Sbjct: 384 AAAGEWPELGVMMAFGPGMTVDAMLLH 410
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 18/87 (20%)
Query: 326 LHQANQRIIDAVANRLDVPMERVISN---LANYGNTSAASIPLALDEAVRSGKVKPGHTI 382
+H + I+D V L + ++ ++ L++YGN S A++ ALDE R K
Sbjct: 299 VHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRK-----EA 353
Query: 383 AAAG----------FGAGLTWGSAILR 399
AAAG FG G+T + +L
Sbjct: 354 AAAGEWPELGVMMAFGPGMTVDAMLLH 380
>pdb|4FFV|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 217
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 61 PRLINRGCKL-VGCGSAVPTLQISNDDLAKIVD-TSDEWISV---RTGIRN-RRVLSGKE 114
P L+ G + + C ++ + N + K + S EWI V + G N + GK
Sbjct: 9 PELVKPGASVKISCKASGYSFTDYNINWMKQSNGKSLEWIGVVIPKYGTTNYNQKFQGKA 68
Query: 115 SLTGLAVEAASRALQMAEVNPEDVDLVLMCTSTPE---DLFGGATQIPKALGCKNNPLAY 171
+LT + +++ +Q+ + ED V CT + D++G T + + P Y
Sbjct: 69 TLT-VDQSSSTAYIQLNSLTSED-SAVYYCTRFRDVFFDVWGTGTTVTVSSAKTTAPSVY 126
Query: 172 DITAACSGFLLGLVSAACHIRG 193
+ C G V+ C ++G
Sbjct: 127 PLAPVCGGTTGSSVTLGCLVKG 148
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 311 LEKAGLTMSSIDWLLLHQANQRIIDAVANRLDVPMERVISN 351
L++AGLT+ ID L++A ++ L++P E++ N
Sbjct: 315 LDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVN 355
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 128 LQMAEVNPEDVDLVLMC--TSTPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLV 185
LQM++V ED L T T D +G T + + P Y + CS V
Sbjct: 81 LQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGSSV 140
Query: 186 SAACHIRG 193
+ C ++G
Sbjct: 141 TLGCLVKG 148
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 130 MAEVNPEDVDLVLMCT-STPEDLFGGATQIPKALGCKNNPLAYDITAACSGFLLGLVSAA 188
+ + + E +D+V++ T S+ ++ A + + +G + +++I C G GL A
Sbjct: 63 LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEGCYGATAGLQLAK 122
Query: 189 CHIRGGGFRNVLVIGGD 205
H+ + VLV+ D
Sbjct: 123 NHVALHPDKKVLVVAAD 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,759,746
Number of Sequences: 62578
Number of extensions: 474675
Number of successful extensions: 1540
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 106
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)