AmiGO: BLAST Results


BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	3.5e-139
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	9.0e-109
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	9.0e-109
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-107
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.7e-107
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	2.7e-107
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	1.5e-106
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	8.3e-106
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	7.5e-105
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Sus scrofa	2.9e-103
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.3e-101
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	3.8e-94
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	1.4e-85
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	8.5e-81
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	8.5e-81
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	7.3e-75
BLAST match view associations BLAST with RH36 RH36 RH36 RNA helicase 36	protein from Arabidopsis thaliana	9.9e-71
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Probable ATP-dependent RNA helicase DDX49	protein from Homo sapiens	7.2e-68
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	1.2e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	1.2e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Sus scrofa	1.9e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-67
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene from Rattus norvegicus	4.0e-67
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein from Mus musculus	1.1e-66
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene_product from Danio rerio	1.1e-64
BLAST match view associations BLAST with H20J04.4 H20J04.4 H20J04.4	gene from Caenorhabditis elegans	7.6e-64
BLAST match view associations BLAST with DBP8 DBP8 DBP8	gene_product from Candida albicans	1.0e-61
BLAST match view associations BLAST with Dbp45A Dbp45A Dbp45A DEAD box protein 45A	protein from Drosophila melanogaster	5.1e-58
BLAST match view associations BLAST with DBP8 DBP8 DBP8 ATPase, putative RNA helicase	gene from Saccharomyces cerevisiae	2.0e-56
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	6.1e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	1.3e-54
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	4.3e-54
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	5.5e-54
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	2.2e-53
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	8.2e-53
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	1.7e-52
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	1.7e-52
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.7e-52
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	1.7e-52
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	3.5e-52
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.4e-52
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	4.4e-52
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	9.2e-52
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	1.2e-51
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	1.2e-51
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	3.1e-51
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	5.1e-51
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	5.1e-51
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	8.3e-51
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	1.3e-50
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.7e-50
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.7e-50
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	2.1e-50
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	2.8e-50
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	3.0e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	4.6e-50
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.6e-50
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	5.8e-50
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	5.8e-50
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.4e-50
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	7.4e-50
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	7.4e-50
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.4e-50
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	9.5e-50
BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	1.7e-49
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	2.5e-49
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	2.5e-49
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	3.2e-49
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	3.2e-49
BLAST match view associations BLAST with SO_1136 SO_1136 SO_1136 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	4.1e-49
BLAST match view associations BLAST with SO_1136 SO_1136 SO_1136 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.1e-49
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-49
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-49
BLAST match view associations BLAST with orf19.5991 orf19.5991 orf19.5991	gene_product from Candida albicans	8.8e-49
BLAST match view associations BLAST with pit pit pit pitchoune	protein from Drosophila melanogaster	1.1e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1	gene_product from Candida albicans	2.3e-48
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A	protein from Pseudomonas protegens Pf-5	2.3e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase HAS1	protein from Candida albicans SC5314	2.3e-48
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Canis lupus familiaris	7.7e-48
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene from Rattus norvegicus	7.7e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	7.7e-48
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  015759
        (401 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi...  1362  3.5e-139  1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R...  1075  9.0e-109  1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo...  1075  9.0e-109  1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1...  1075  9.0e-109  1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"...  1065  1.0e-107  1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R...  1063  1.7e-107  1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m...  1061  2.7e-107  1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"...  1054  1.5e-106  1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"...  1047  8.3e-106  1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh...  1038  7.5e-105  1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"...  1023  2.9e-103  1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli...  1005  2.3e-101  1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R...   977  2.2e-98   1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer...   958  2.2e-96   1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ...   937  3.8e-94   1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr...   856  1.4e-85   1
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica...   811  8.5e-81   1
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas...   811  8.5e-81   1
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli...   755  7.3e-75   1
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie...   716  9.9e-71   1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R...   689  7.2e-68   1
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"...   687  1.2e-67   1
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"...   687  1.2e-67   1
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"...   685  1.9e-67   1
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"...   683  3.1e-67   1
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po...   682  4.0e-67   1
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo...   678  1.1e-66   1
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-...   659  1.1e-64   1
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh...   651  7.6e-64   1
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica...   631  1.0e-61   1
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli...   622  9.0e-61   1
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe...   596  5.1e-58   1
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica...   581  2.0e-56   1
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme...   578  4.2e-56   1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he...   569  3.7e-55   1
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer...   568  4.8e-55   1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"...   567  6.1e-55   1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"...   565  9.9e-55   1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"...   565  9.9e-55   1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R...   565  9.9e-55   1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R...   564  1.3e-54   1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo...   559  4.3e-54   1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"...   558  5.5e-54   1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas...   553  2.2e-53   1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-...   547  8.2e-53   1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica...   544  1.7e-52   1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas...   544  1.7e-52   1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel...   544  1.7e-52   1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he...   544  1.7e-52   1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor...   541  3.5e-52   1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel...   540  4.4e-52   1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he...   540  4.4e-52   1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli...   537  9.2e-52   1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli...   536  1.2e-51   1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN...   536  1.2e-51   1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli...   532  3.1e-51   1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ...   530  5.1e-51   1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi...   530  5.1e-51   1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi...   528  8.3e-51   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   526  1.3e-50   1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   525  1.7e-50   1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   525  1.7e-50   1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ...   525  2.1e-50   1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli...   527  2.1e-50   1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN...   523  2.8e-50   1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi...   526  3.0e-50   1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN...   521  4.6e-50   1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli...   521  4.6e-50   1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ...   520  5.8e-50   1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep...   520  5.8e-50   1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel...   519  7.4e-50   1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   519  7.4e-50   1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   519  7.4e-50   1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he...   519  7.4e-50   1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas...   518  9.5e-50   1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil...   519  1.7e-49   1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p...   514  2.5e-49   1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h...   514  2.5e-49   1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN...   513  3.2e-49   1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he...   513  3.2e-49   1
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli...   512  4.1e-49   1
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli...   512  4.1e-49   1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli...   509  8.5e-49   1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli...   509  8.5e-49   1
CGD|CAL0003464 - symbol:orf19.5991 species:5476 "Candida ...   348  8.8e-49   2
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro...   483  1.1e-48   2
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica...   505  2.3e-48   1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote...   505  2.3e-48   1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas...   505  2.3e-48   1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer...   502  4.7e-48   1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli...   501  6.0e-48   1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"...   500  7.7e-48   1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po...   500  7.7e-48   1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1...   500  7.7e-48   1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"...   500  7.7e-48   1

WARNING:  Descriptions of 774 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2173517 [details] [associations]
            symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
            IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
            ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
            PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
            KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
            PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
            GermOnline:AT5G60990 Uniprot:Q8GY84
        Length = 456

 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 271/373 (72%), Positives = 307/373 (82%)

Query:     5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIA------ENQRTVPAFFACVLSPTREL 58
             F   GKD+IGLAQTGSGKTGAFA+PILQALLE        + +R  PAFFACVLSPTREL
Sbjct:    42 FALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTREL 101

Query:    59 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS 118
             AIQI+EQFEALG+ ISLRCAVLVGG+D MQQT+ALGKRPH++VATPGRL DH+++TKGFS
Sbjct:   102 AIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS 161

Query:   119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
             L +LKYLVLDEADRLLN+DFEKSL++IL  IP  R+T+LFSATMTKKV+KLQRACL+NPV
Sbjct:   162 LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPV 221

Query:   179 KIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238
             KIEAASKYSTVDTLKQQYRFV AKYKDCYLVYIL+E+  S++M+FTRTCD TR LAL+LR
Sbjct:   222 KIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLR 281

Query:   239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
             +LG RAIPISG M+QSKRLGALNKFKAGECNIL+CTDVASRGLDIPSVD+VINYDIPTNS
Sbjct:   282 SLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNS 341

Query:   299 KDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXX 358
             KDYIH              ISLVNQYELEWY+QIEKLIGKK                   
Sbjct:   342 KDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVA 401

Query:   359 XXKRISQMTIKDS 371
               K++S M +K+S
Sbjct:   402 EAKKLSAMNMKES 414


>UNIPROTKB|Q29S22 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
            process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
            IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
            ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
            Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
            HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
        Length = 457

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 215/331 (64%), Positives = 261/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    63 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 116

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++CAV+VGG+D M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   117 LGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMD 176

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   177 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 236

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   237 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 296

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   297 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 356

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   357 ARAGRSGKAITFVTQYDVELFQRIEHLIGKK 387


>MGI|MGI:1915005 [details] [associations]
            symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
            GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
            EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
            ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
            PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
            Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
            InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
            Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
        Length = 455

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 215/331 (64%), Positives = 261/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    61 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 114

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++CAV+VGG+D M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   115 LGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMD 174

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   175 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 234

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   235 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 294

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   295 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 354

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   355 ARAGRSGKAITFVTQYDVELFQRIEHLIGKK 385


>UNIPROTKB|G3V727 [details] [associations]
            symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
            GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
            RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
            GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
            Uniprot:G3V727
        Length = 455

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 215/331 (64%), Positives = 261/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    61 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 114

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++CAV+VGG+D M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   115 LGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMD 174

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   175 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 234

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   235 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 294

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   295 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 354

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   355 ARAGRSGKAITFVTQYDVELFQRIEHLIGKK 385


>UNIPROTKB|E2RN03 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
            NextBio:20853120 Uniprot:E2RN03
        Length = 482

 Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
 Identities = 214/331 (64%), Positives = 260/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    87 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 140

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++ AV+VGG+D M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   141 LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMD 200

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   201 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 260

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   261 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 320

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   321 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 380

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   381 ARAGRSGKAITFVTQYDVELFQRIEHLIGKK 411


>UNIPROTKB|Q9H0S4 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
            processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
            EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
            EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
            IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
            PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
            MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
            SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
            Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
            KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
            HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
            PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
            ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
            NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
            Genevestigator:Q9H0S4 Uniprot:Q9H0S4
        Length = 455

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 213/331 (64%), Positives = 260/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    61 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 114

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++ AV+VGG+D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   115 LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 174

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   175 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 234

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   235 VEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 294

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   295 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 354

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   355 ARAGRSGKAITFVTQYDVELFQRIEHLIGKK 385


>FB|FBgn0032919 [details] [associations]
            symbol:CG9253 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
            PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
            OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
        Length = 507

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 214/362 (59%), Positives = 267/362 (73%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IGLA+TGSGKTGAFALPIL ALLE    QR    +FA VL+PTRELA QI EQFEA
Sbjct:    98 GKDVIGLAETGSGKTGAFALPILHALLE--NPQR----YFALVLTPTRELAFQIGEQFEA 151

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGSGI ++C V+VGG+DM+ Q L L K+PHI++ATPGRL+DHL N KGF+L  +KYLV+D
Sbjct:   152 LGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMD 211

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  LD+IL V+PR R+T+LFSATMTKKVKKLQRA LK+PVK+E ++KY T
Sbjct:   212 EADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQT 271

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P KYKD YLV+IL E++ +S M+F  TC+ T   ALMLR LG  AIP+ 
Sbjct:   272 VEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLH 331

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ+KRL ALNKFKA   +ILI TDVASRGLDIP VD+V+N+DIPT+SKDYIH     
Sbjct:   332 GQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 391

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTI 368
                      I+LV+QY++E Y +IE L+GK+                     +R +++ +
Sbjct:   392 ARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLEL 451

Query:   369 KD 370
             KD
Sbjct:   452 KD 453


>UNIPROTKB|Q5ZLB0 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
            HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
            EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
            RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
            Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
            InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
        Length = 453

 Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
 Identities = 211/331 (63%), Positives = 260/331 (78%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPILQALL+    QR     FA VL+PTRELA QISEQFEA
Sbjct:    62 GRDIIGLAETGSGKTGAFALPILQALLDAP--QR----LFALVLTPTRELAFQISEQFEA 115

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I +  AV+VGG+D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LK+LV+D
Sbjct:   116 LGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMD 175

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTK+V+KLQRA LKNPVK   +SKY T
Sbjct:   176 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQT 235

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   236 VEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 295

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ+KRLG+LNKFKA   +IL+ TDVASRGLDIP VD+VIN+DIPT+SKDYIH     
Sbjct:   296 GQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 355

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+ V QY++E + +IE LIGKK
Sbjct:   356 ARAGRSGKSITFVTQYDVELFQRIEHLIGKK 386


>ZFIN|ZDB-GENE-050522-359 [details] [associations]
            symbol:zgc:112350 "zgc:112350" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
            EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
            UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
            KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
        Length = 512

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 208/363 (57%), Positives = 269/363 (74%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFA+P+LQ+LL  A+   T+      VL+PTRELA QI+EQF+A
Sbjct:   116 GRDVIGLAETGSGKTGAFAVPVLQSLLACAQRLHTL------VLTPTRELAFQIAEQFDA 169

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++ AV+VGG+DMM Q L L K+PH+V+ATPGRL+DH+ NTKGF+L  LKYLV+D
Sbjct:   170 LGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMD 229

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA L++PVK   +SKY+T
Sbjct:   230 EADRILNMDFESEVDKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYAT 289

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             VD L+Q Y F+P+KYKDCYLV IL E++ +S MVF  TC+ T+ +AL+LRNLG  AIP+ 
Sbjct:   290 VDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLH 349

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ+KRLGALNKFK+   ++L+ TDVASRGLDIP VD VIN+DIPT+SKDYIH     
Sbjct:   350 GQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRT 409

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTI 368
                      I+ V QY++E + +IE LIGKK                     +R +++ +
Sbjct:   410 ARAGRSGKSITFVTQYDVELFQRIEALIGKKLPAFPTQEEEVMMLVERVSEAQRFARIEM 469

Query:   369 KDS 371
             K+S
Sbjct:   470 KES 472


>WB|WBGene00012059 [details] [associations]
            symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
            GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
            OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
            ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
            EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
            UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
            NextBio:892086 Uniprot:P34580
        Length = 489

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 202/331 (61%), Positives = 253/331 (76%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IGLA+TGSGKTGAFA+P+LQ+LL+  +      AFF  VL+PTRELA QI +QFEA
Sbjct:    81 GKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ------AFFCLVLTPTRELAFQIGQQFEA 134

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGSGI L  AV+VGGVDM  Q +AL +RPHI+VATPGRL+DHL NTKGF+L  LK+L++D
Sbjct:   135 LGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMD 194

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  LD+IL VIPR R+TYLFSATMTKKV KL+RA L++P ++  +S+Y T
Sbjct:   195 EADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKT 254

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             VD LKQ Y FVP KYK+ YLVY+L E + +S +VF  TC  T  +A+MLR LG +A+P+ 
Sbjct:   255 VDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLH 314

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ KRLG+LNKFK+    IL+CTDVA+RGLDIP VDMVINYD+P+ SKDY+H     
Sbjct:   315 GQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRT 374

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I++V QY++E Y +IE  +GKK
Sbjct:   375 ARAGRSGIAITVVTQYDVEAYQKIEANLGKK 405


>UNIPROTKB|I3L976 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
        Length = 456

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 203/295 (68%), Positives = 244/295 (82%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKTGAFALPIL ALLE    QR     FA VL+PTRELA QISEQFEA
Sbjct:    60 GRDIIGLAETGSGKTGAFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEA 113

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I ++CAV+VGG+D M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+D
Sbjct:   114 LGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMD 173

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY T
Sbjct:   174 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 233

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V+ L+Q Y F+P+K+KD YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ 
Sbjct:   234 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 293

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G MSQSKRLG+LNKFKA   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH
Sbjct:   294 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 348


>DICTYBASE|DDB_G0280147 [details] [associations]
            symbol:ddx47 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
            EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
            EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
            Uniprot:Q54VT4
        Length = 546

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 201/392 (51%), Positives = 262/392 (66%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLAQTGSGKT AF +P+LQ LLE  +        F   L+PTRELA QI++QF A
Sbjct:   156 GRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQG------LFCLALAPTRELAYQIADQFNA 209

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +GS I ++  VLVGG+D M Q+LAL K+PH+VV +PGR++ HL +TKGF+L ++KY ++D
Sbjct:   210 IGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMD 269

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRL + DFE+ ++ IL VIP+ R TYLFSATMT KV KLQRA L NPVK++ ASKY T
Sbjct:   270 EADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQT 329

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             VDTL QQY FVP KYKDCYL YIL E++ + T++FT TC ++  +A+MLRNLG  AIPI+
Sbjct:   330 VDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPIN 389

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G M Q KRL +LNKFK G  +IL+ TDVA+RGLDIPSVD+VINYD+PTNSK+Y+H     
Sbjct:   390 GDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRT 449

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTI 368
                      I++V QY++E Y +IE ++ KK                      RI+   +
Sbjct:   450 ARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNEL 509

Query:   369 KDSXXXXXXXXXXXXXXXXXQFGINKKKLSKR 400
             KD                     INK+K+ K+
Sbjct:   510 KDKNYSSSSDRHSGDSEGSID--INKRKVIKK 539


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 197/330 (59%), Positives = 249/330 (75%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D+IGLAQTGSGKT AFALP++Q   E+  N    P FFA VL+PTRELA QISEQFEA+
Sbjct:    84 RDVIGLAQTGSGKTAAFALPVIQ---ELWNNPS--P-FFAVVLAPTRELAYQISEQFEAI 137

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G  I +R  V+VGG+DM+ Q +AL K+PH++V TPGRLMDHL NTKGFSL  LKYL++DE
Sbjct:   138 GGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDE 197

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             ADRLL+ DF   +D+IL +IP  R+T LFSATMT KV+KLQRA L  PV++  +SK+STV
Sbjct:   198 ADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTV 257

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
             DTL Q+Y F P K+KD YLVY++ E++ +S ++F RT + T+ LA++LR LG  AIP+ G
Sbjct:   258 DTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHG 317

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              +SQS RLGALNKFK+G  + L+ TDVA+RGLDIP VD+VINYDIPT+SK YIH      
Sbjct:   318 QLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTA 377

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     I+LV QY+LE +L+IE  IGKK
Sbjct:   378 RAGRAGKSIALVTQYDLEPFLRIEATIGKK 407


>ASPGD|ASPL0000013201 [details] [associations]
            symbol:AN4233 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
            STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
            KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
        Length = 465

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 189/331 (57%), Positives = 244/331 (73%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IGLA+TGSGKT AFALP+LQAL+E  +        F  VL+PTRELA QIS+ FE 
Sbjct:    83 GRDVIGLAETGSGKTAAFALPMLQALMEAPQT------LFGLVLAPTRELAYQISQAFET 136

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS I +RCAV+VGG+DM+ Q++ALGK+PHI+VATPGRL+DHL NTKGFSL  LKYL +D
Sbjct:   137 LGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAID 196

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRLL+ DF +SLD+I+ ++PR R TYLFSATM+ KV+ LQRA L NPV++  +SKY T
Sbjct:   197 EADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQT 256

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V TL+  Y  +P K+K+ YLVY+L E +  S ++FT T   T+ +A MLR LG  AIP+ 
Sbjct:   257 VSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLH 316

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G +SQS RLGAL KF++   +IL+ TDVA+RGLDIPSVD+V N+D+P +SK YIH     
Sbjct:   317 GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRT 376

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      IS V QY++E +L+IE  + KK
Sbjct:   377 ARAGKSGVAISFVTQYDVEVWLRIEHALSKK 407


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 189/331 (57%), Positives = 239/331 (72%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IGLAQTGSGKT AFA+PILQ+L    +     P +FA VL+PTREL  QI + F+A
Sbjct:   160 GKDIIGLAQTGSGKTAAFAIPILQSLWHAQQ-----P-YFALVLAPTRELTFQIKDTFDA 213

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS + LR + +VGG+DMM Q   L ++PH++VATPGR+MDHL +TKGFSL  LKYLV+D
Sbjct:   214 LGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMD 273

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRLL+ DF  +LD+IL VIP  R TYLFSATMT K++KLQRA L NPV++  +SKY T
Sbjct:   274 EADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQT 333

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
              D L Q    V   YK+  L+++L E    S +VFTRT    +  AL+ R LG  A+P+ 
Sbjct:   334 ADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLH 393

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G +SQS+RLG+LNKFK+ + NIL+ TDVA+RGLDIPSVD+VINYDIPT+SK YIH     
Sbjct:   394 GQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRT 453

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      ISL+ QY+LE YL+IE ++GKK
Sbjct:   454 ARAGRSGKSISLITQYDLEMYLRIESVLGKK 484


>SGD|S000001107 [details] [associations]
            symbol:RRP3 "Protein involved in rRNA processing"
            species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
            SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
            GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
            RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
            DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
            PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
            KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
            GermOnline:YHR065C Uniprot:P38712
        Length = 501

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 181/334 (54%), Positives = 235/334 (70%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D+IGLAQTGSGKT AFA+PIL  L    E     P ++AC+L+PTRELA QI E F++
Sbjct:   118 GHDIIGLAQTGSGKTAAFAIPILNRLWHDQE-----P-YYACILAPTRELAQQIKETFDS 171

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LGS + +R   +VGG++MM Q   L ++PHI++ATPGRLMDHL NTKGFSL  LK+LV+D
Sbjct:   172 LGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMD 231

Query:   129 EADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             EADRLL+ +F   LD IL +IP   R TYLFSATMT K+ KLQRA L NPVK   ++KY 
Sbjct:   232 EADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQ 291

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT-CDATRLLALMLRNLGQ-RAI 245
             TVDTL Q    VP   K+ YL+Y+L E    + ++FTRT  +A RL  L   NL +  A 
Sbjct:   292 TVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLC--NLLEFSAT 349

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G ++Q++R+G+L+ FKAG+ +IL+ TDVA+RGLDIPSVD+V+NYDIP +SK YIH  
Sbjct:   350 ALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRV 409

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                         ISLV+QY+LE  L+IE+++GKK
Sbjct:   410 GRTARAGRSGKSISLVSQYDLELILRIEEVLGKK 443


>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
            symbol:PFB0860c "RNA helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
            KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
            ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
            GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
            OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
        Length = 562

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 159/330 (48%), Positives = 228/330 (69%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             KD+IGL++TGSGKT  F +PILQ   ++  N+++   F+A V+SPTREL IQIS+ F+AL
Sbjct:   194 KDIIGLSETGSGKTACFIIPILQ---DLKVNKQS---FYALVISPTRELCIQISQNFQAL 247

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G  + +    + GGVD++ Q+L L K+P+++V+TPGR++DHL NTKGF+L  LKYLV DE
Sbjct:   248 GMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDE 307

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             AD+LL+ DFE S++++L ++P  R T+LFSATMTK V KL++ACLKNPVK+E ++KYSTV
Sbjct:   308 ADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTV 367

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
              TL + Y F+P KYK  YL  +       + ++FT TC   + L    RNLG ++I + G
Sbjct:   368 STLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHG 427

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              ++Q++RL +LN FK  + NILI T V +RGLD+  + +VIN+DI  + K+YIH      
Sbjct:   428 KLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTA 486

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     I+ V QY++E +L IEK + KK
Sbjct:   487 RAGRSGKSITFVTQYDVENFLAIEKQLNKK 516


>UNIPROTKB|O96264 [details] [associations]
            symbol:PFB0860c "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
            RefSeq:XP_001349688.1 ProteinModelPortal:O96264
            EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
            EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
            Uniprot:O96264
        Length = 562

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 159/330 (48%), Positives = 228/330 (69%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             KD+IGL++TGSGKT  F +PILQ   ++  N+++   F+A V+SPTREL IQIS+ F+AL
Sbjct:   194 KDIIGLSETGSGKTACFIIPILQ---DLKVNKQS---FYALVISPTRELCIQISQNFQAL 247

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G  + +    + GGVD++ Q+L L K+P+++V+TPGR++DHL NTKGF+L  LKYLV DE
Sbjct:   248 GMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDE 307

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             AD+LL+ DFE S++++L ++P  R T+LFSATMTK V KL++ACLKNPVK+E ++KYSTV
Sbjct:   308 ADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTV 367

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
              TL + Y F+P KYK  YL  +       + ++FT TC   + L    RNLG ++I + G
Sbjct:   368 STLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHG 427

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              ++Q++RL +LN FK  + NILI T V +RGLD+  + +VIN+DI  + K+YIH      
Sbjct:   428 KLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTA 486

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     I+ V QY++E +L IEK + KK
Sbjct:   487 RAGRSGKSITFVTQYDVENFLAIEKQLNKK 516


>DICTYBASE|DDB_G0270396 [details] [associations]
            symbol:ddx49 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
            GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
            RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
            PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
            KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
        Length = 508

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 158/333 (47%), Positives = 211/333 (63%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+I  A+TGSGKT +FA+PIL    +++E+   V   FA +L+PTRELA+QI EQF A
Sbjct:    41 GRDIIASAKTGSGKTASFAIPILN---QLSEDPYGV---FAVILTPTRELAVQIGEQFNA 94

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G+ +++ C+V++GG+D + Q L L KRPHI+VATPGRL  HL N    +L   K+LVLD
Sbjct:    95 IGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLD 154

Query:   129 EADRLLNDDFEKSLDEILNVIP--RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             EADRLL +DFE  +  IL  +P    RQT LFSATMTK + KL    L  P   E  SKY
Sbjct:   155 EADRLLGEDFELEIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKY 214

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              TVDTLKQ+Y ++PA  KDCYLVYIL +   SS +VF   C A   +  ML  L   ++ 
Sbjct:   215 DTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVS 274

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             +   + Q  RL AL  FK+G+  +L+ TDVASRGLDIP V +VINY +  +SKDYIH   
Sbjct:   275 LHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVG 334

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                        IS +  +++     IE++I K+
Sbjct:   335 RTARFGRSGRAISFITPHDVSLIKGIEEIIKKQ 367


>TAIR|locus:2032910 [details] [associations]
            symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
            development" evidence=IMP] [GO:0009791 "post-embryonic development"
            evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
            evidence=IMP] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
            GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
            PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
            ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
            EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
            KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
            InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
            Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
        Length = 491

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 162/369 (43%), Positives = 222/369 (60%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++GLAQTGSGKT AFALPIL  L   AE+   V   FA V++PTRELA Q++EQF+
Sbjct:    94 AGRDVLGLAQTGSGKTAAFALPILHRL---AEDPYGV---FALVVTPTRELAFQLAEQFK 147

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS--LGTLKYL 125
             ALGS ++LRC+V+VGG+DM+ QT++L  RPHIV+ TPGR+   L N           K+L
Sbjct:   148 ALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFL 207

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             VLDEADR+L+  F+  L  I   +P+ RQT LFSATMT  ++ L           EA   
Sbjct:   208 VLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEG 267

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS---STMVFTRTCDATRLLALMLRNLGQ 242
               TVDTL QQ+ F     K+ YLV+IL+++      S M+F  TC   + L+LML  L  
Sbjct:   268 LKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEV 327

Query:   243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
               I +    SQS RL AL+KFK+G+  IL+ TDVASRGLDIP+VD+VINYDIP + +DY+
Sbjct:   328 ENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYV 387

Query:   303 HXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKR 362
             H              +S++ + +++   +IE+ +GKK                     KR
Sbjct:   388 HRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKR 447

Query:   363 ISQMTIKDS 371
             ++ M + D+
Sbjct:   448 VAMMKMLDN 456


>UNIPROTKB|Q9Y6V7 [details] [associations]
            symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
            RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
            SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
            DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
            Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
            CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
            PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
            PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
            Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
            GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
        Length = 483

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 151/338 (44%), Positives = 205/338 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  FS+  +++LV+D
Sbjct:    93 LGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  +++LQ      P   EA + 
Sbjct:   153 EADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAP 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS----STMVFTRTCDATRLLALMLRNLG 241
              STV+ L Q+Y  VP K KD YLV+++          S ++FT TC   ++L +MLR   
Sbjct:   213 VSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFS 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             IH              I+LV QY++     IE+ I KK
Sbjct:   333 IHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 370


>UNIPROTKB|F1NA53 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
            IPI:IPI00684751 ProteinModelPortal:F1NA53
            Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
        Length = 402

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 153/338 (45%), Positives = 207/338 (61%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LP+LQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPVLQVL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  V+VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  FSL  LK+LVLD
Sbjct:    93 LGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  + +L+   +  P   EAAS+
Sbjct:   153 EADRLLEQGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASE 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
               TVD L Q+Y  VP   KD YLV+++     E    S ++FT+TC   ++L +MLR   
Sbjct:   213 VRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFS 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
               ++ +   M Q +R  AL KFK+    ILI TDVA+RGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             IH              I++V QY++     IE+ I  K
Sbjct:   333 IHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLK 370


>UNIPROTKB|F1NYX0 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
            EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
            ArrayExpress:F1NYX0 Uniprot:F1NYX0
        Length = 482

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 153/338 (45%), Positives = 207/338 (61%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LP+LQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    42 GRDCLGCAKTGSGKTAAFVLPVLQVL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 95

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  V+VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  FSL  LK+LVLD
Sbjct:    96 LGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLD 155

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  + +L+   +  P   EAAS+
Sbjct:   156 EADRLLEQGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASE 215

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
               TVD L Q+Y  VP   KD YLV+++     E    S ++FT+TC   ++L +MLR   
Sbjct:   216 VRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFS 275

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
               ++ +   M Q +R  AL KFK+    ILI TDVA+RGLDIP+V +VIN++ P   K Y
Sbjct:   276 FPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIY 335

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             IH              I++V QY++     IE+ I  K
Sbjct:   336 IHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLK 373


>UNIPROTKB|F1S7D9 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
            RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
            GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
        Length = 483

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 150/338 (44%), Positives = 204/338 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  FS+  +++LV+D
Sbjct:    93 LGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  +++LQ      P   EA + 
Sbjct:   153 EADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAP 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS----STMVFTRTCDATRLLALMLRNLG 241
               TV+ L Q+Y  VP K KD YLV+++          S ++FT TC   ++L +MLR   
Sbjct:   213 VRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             IH              I+LV QY++     IE+ I KK
Sbjct:   333 IHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 370


>UNIPROTKB|E2RBM7 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
            EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
            Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
            NextBio:20858886 Uniprot:E2RBM7
        Length = 488

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 150/338 (44%), Positives = 204/338 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  FS+  +++LV+D
Sbjct:    93 LGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  +K+LQ      P   EA + 
Sbjct:   153 EADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSATLTDTLKELQGLATNQPFFWEAQAP 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS----STMVFTRTCDATRLLALMLRNLG 241
               TV+ L Q+Y  VP K KD YLV+++          S ++FT TC   ++L +MLR   
Sbjct:   213 VRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             IH              I+LV QY++     IE+ I K+
Sbjct:   333 IHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKQ 370


>RGD|1311124 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
            Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
        Length = 480

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 148/335 (44%), Positives = 205/335 (61%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  F++  +++LVLD
Sbjct:    93 LGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL+ +P  RQT LFSAT+T  +K+LQ      P   EA + 
Sbjct:   153 EADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLTDTLKELQGLATNQPFFWEAQAT 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
               TV+ L Q+Y  VP K KD YLV+++     ++   S ++FT TC   ++L +MLR   
Sbjct:   213 VRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + +   M Q +R  AL +FK+    ILI TDVASRGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTVALHSMMKQKERFAALARFKSSTYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
             IH              I+LV QY++     IE+ I
Sbjct:   333 IHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEEI 367


>MGI|MGI:2136689 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
            OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
            RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
            ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
            PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
            KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
            Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
            GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
        Length = 480

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 148/335 (44%), Positives = 204/335 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L ++PH+V+ATPGRL DHL ++  F++  +++LV+D
Sbjct:    93 LGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF   L+ IL  +P  RQT LFSAT+T  +K+LQ      P   EA + 
Sbjct:   153 EADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQAT 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
               TV+ L Q+Y  VP K KD YLV+++     ++   S ++FT TC   ++L +MLR   
Sbjct:   213 VRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
             IH              I+LV QY++     IE+ I
Sbjct:   333 IHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQI 367


>ZFIN|ZDB-GENE-031030-3 [details] [associations]
            symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
            HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
            RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
            STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
            NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
        Length = 468

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 145/333 (43%), Positives = 202/333 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LP+LQ L   +E+   V   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCMGCAKTGSGKTAAFVLPVLQKL---SEDPYGV---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + L+  ++VGG+DM+ Q L L K+PH+VVATPGRL DH+ ++   +L  +++L++D
Sbjct:    93 LGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMD 152

Query:   129 EADRLLND---DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             EADRLL     DF K L+ IL+ +P  RQT LFSAT+T  +++LQ   +  P   E  S 
Sbjct:   153 EADRLLEQGCTDFTKDLEVILSAVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSD 212

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
               TV+ L Q++   P K KD YLV+++     E    S ++FT TC + ++L +MLR   
Sbjct:   213 VQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFN 272

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                I +   M Q +R   L KFK+    ILI TDVA+RGLDIP+V +VIN++ P   K Y
Sbjct:   273 FPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIY 332

Query:   302 IHXXXXXXXXXXXXXXISLVNQYELEWYLQIEK 334
             IH              I+LV QY++     IE+
Sbjct:   333 IHRVGRTARAGRNGVSITLVTQYDIHLINAIEE 365


>WB|WBGene00019219 [details] [associations]
            symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
            RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
            PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
            KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
            InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
        Length = 561

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 145/341 (42%), Positives = 198/341 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP-AFFACVLSPTRELAIQISEQFE 67
             G D++G A+TG+GKT AFA+PILQ L          P   +A +L+PTRELA QI+EQF 
Sbjct:   126 GSDILGCARTGTGKTLAFAIPILQKL-------SVDPYGIYALILTPTRELAFQIAEQFT 178

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN---TKGFSLGTLKY 124
             ALG  I+L+C+V+VGG  ++ Q   L +RPH+VVATPGRL D + +   T       +++
Sbjct:   179 ALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQF 238

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
              VLDEADR+L   +   L  I   I   RQT L SAT+T  +  L R   + P   E   
Sbjct:   239 FVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKG 298

Query:   185 K--YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSA----SSTMVFTRTCDATRLLALMLR 238
             K   STVD L+Q+Y   P   KD YLVY++   S     SS M+F +TC   + LA M  
Sbjct:   299 KDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFE 358

Query:   239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
              LG R   +   + Q +RL AL+ F++    ++ICTDVASRGLDIP VD+V+N+++P   
Sbjct:   359 GLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCP 418

Query:   299 KDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             K YIH              +S V QY++E    +E++IGKK
Sbjct:   419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKK 459


>CGD|CAL0004058 [details] [associations]
            symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
            SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
            from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
            "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
            RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
            STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
            KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
        Length = 440

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 147/344 (42%), Positives = 209/344 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D IG A+TGSGKT AFA P+L    + +E+   +   F  +L+PTRELA+QI+EQF A
Sbjct:    38 GHDCIGGAKTGSGKTIAFAAPMLT---QWSEDPFGI---FGLILTPTRELALQIAEQFAA 91

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL---KYL 125
             LG+ ++++ AV+VGG D +QQTLAL ++PH V+ATPGRL DH+ N+   ++  L   KYL
Sbjct:    92 LGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYL 151

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRM--RQTYLFSATMTKKVKKLQRACL---KNPV-- 178
             VLDEADRLL++ F   L    +V+P    RQT LF+AT+T  V+ L+       K PV  
Sbjct:   152 VLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFM 211

Query:   179 -KIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL--TEVSASSTMVFTRTCDATRLLAL 235
              ++E   K +   TL+  Y FVP+  K+ YL  IL   +   S+ ++F        +L  
Sbjct:   212 HEVETVDKVAIPSTLQISYVFVPSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRR 271

Query:   236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295
             MLR L  R   +   M QS+R  +L++FKAG   ILI TDVASRGLDIP+V++VIN+DIP
Sbjct:   272 MLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIP 331

Query:   296 TNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
              +  D+IH              +S++ + +++    IE+ I KK
Sbjct:   332 ADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKK 375


>POMBASE|SPBC543.06c [details] [associations]
            symbol:dbp8 "ATP-dependent RNA helicase Dbp8
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
            RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
            EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
            NextBio:20802183 Uniprot:Q9HGM5
        Length = 453

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 144/345 (41%), Positives = 210/345 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G++ IG A+TGSGKT AFALPI++         +     FA +L+PTRELAIQI EQF A
Sbjct:    44 GRNCIGGAKTGSGKTAAFALPIIEKW------SKDPSGIFALILTPTRELAIQIDEQFAA 97

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG----FSLGTLKY 124
             LG+ ++L+ A++VGG+DM++Q++ L KRPH+VVATPGRL D L  + G      L  +K+
Sbjct:    98 LGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD-LIRSNGEETIAGLRRIKF 156

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRM--RQTYLFSATMTKKVKKLQRACLKN---PV- 178
             LV+DEADRLL+  F   LD+  +V+P    RQT LF+AT+T  +++L+    KN   P+ 
Sbjct:   157 LVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLW 216

Query:   179 --KIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLA 234
               ++E     S   TL+Q Y FV ++ ++ YLV++LT  E +  S ++F        L+ 
Sbjct:   217 LYEVET-DNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIY 275

Query:   235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 294
              +LR L  R   +   M Q +R+ +L +F+A    IL+ TDVASRGLDIPSV +VIN+D+
Sbjct:   276 SILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDL 335

Query:   295 PTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             P +  DYIH              IS+V + +++    IE  +G K
Sbjct:   336 PRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTK 380


>FB|FBgn0010220 [details] [associations]
            symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
            melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
            PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
            ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
            EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
            CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
            OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
            Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
        Length = 521

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 146/339 (43%), Positives = 200/339 (58%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D IG A+TGSGKT AFALPIL+ L E       V + FA VL+PT ELA QISEQF 
Sbjct:    43 AGQDCIGAAKTGSGKTFAFALPILERLSE-----EPV-SHFALVLTPTHELAYQISEQFL 96

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G  + +R  V+ GG D M ++  L +RPHIVVA PGRL DHLT    FS   LKYLV+
Sbjct:    97 VAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVV 156

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV-KIEAASKY 186
             DEADR+LN DF++SL  I   +P+ RQ   FSATM   +K+     + +   +    S  
Sbjct:   157 DEADRMLNGDFDESLSIIERCLPKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDV 216

Query:   187 STVDTLKQQYRFVPAKY-KDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLG 241
             +TV+TL Q+Y  + A Y +D  L+  L     E   ++ M+FT T    +LL++ L+N+ 
Sbjct:   217 ATVETLDQRY-LLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME 275

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + + G M Q +R+ AL++FK+ +   LI TDVA+RGLDIPSV++V+N+ +P   K+Y
Sbjct:   276 IDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEY 335

Query:   302 IHXXXXXXXXXXXXXXISLVN-QYELEWYLQIEKLIGKK 339
             IH              IS+     +LE    IE+ I  K
Sbjct:   336 IHRVGRTARAGRKGMSISIFRFPRDLELLAAIEEEINTK 374


>SGD|S000001212 [details] [associations]
            symbol:DBP8 "ATPase, putative RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
            evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
            mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
            "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
            rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
            rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
            GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
            OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
            ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
            MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
            EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
            GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
            Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
            Uniprot:P38719
        Length = 431

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 140/344 (40%), Positives = 197/344 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D IG A+TGSGKT AFA P+L    E           F  VL+PTRELA+QI+EQF A
Sbjct:    39 GRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGM------FGVVLTPTRELAMQIAEQFTA 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL---KYL 125
             LGS +++R +V+VGG  ++QQ L L ++PH ++ATPGRL  H+ ++   ++G L   KYL
Sbjct:    93 LGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYL 152

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRM--RQTYLFSATMTKKVKKLQRACL---KNPV-- 178
             VLDEAD LL   F   L   ++ +P    RQT LF+AT+T +VK LQ A +   K P+  
Sbjct:   153 VLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFA 212

Query:   179 -KIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLAL 235
              ++E+    +   TLK +Y  VP   K+ YL  +LT  E    + ++F        +L  
Sbjct:   213 YQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRR 272

Query:   236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295
              L+ L  R   +   M Q +R  +L++F+A    ILI TDVASRGLDIP+V++V+NYDIP
Sbjct:   273 TLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIP 332

Query:   296 TNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             ++   +IH              IS V Q ++     IE  I KK
Sbjct:   333 SDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKK 376


>ASPGD|ASPL0000062195 [details] [associations]
            symbol:AN10125 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
        Length = 814

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 127/298 (42%), Positives = 177/298 (59%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A TGSGKT AF +PIL+ LL      R VP     +L PTRELA+Q       
Sbjct:   335 GKDIVGSAVTGSGKTAAFVVPILERLLF---RPRKVPTSRVAILMPTRELAVQCYNVATK 391

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +   +    LVGG  + +Q   L KRP +++ATPGR +DH+ N+  F++ TL+ LVLD
Sbjct:   392 LATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLD 451

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L D F   L+EIL  IP+ RQT LFSATMT  V KL R  L  PV++   +K +T
Sbjct:   452 EADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNT 511

Query:   189 VDTLKQQY-RFVPAKYKDC--YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
               TL Q++ R  P +      YL+++  EV     +VF R       + ++   LG +A 
Sbjct:   512 AVTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAA 571

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + G MSQ +R+ ++  F+ G  N L+ TD+ASRGLDI  V+ VINY+ P + + Y+H
Sbjct:   572 ELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVH 629


>POMBASE|SPAC30D11.03 [details] [associations]
            symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
            RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
            EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
            NextBio:20804181 Uniprot:Q09903
        Length = 754

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 122/318 (38%), Positives = 182/318 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A TGSGKT AF +PIL+ LL      + VP     +L PTRELA+Q       
Sbjct:   296 GKDIVGAAVTGSGKTAAFIVPILERLLY---RPKKVPTTRVLILCPTRELAMQCHSVATK 352

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             + S   +   + +GG+ +  Q   L KRP IV+ATPGR +DH+ N++GF++  ++ +V+D
Sbjct:   353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMD 412

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L D F   L+EI+   P+ RQT LFSATMT KV  L R  L  PV++   +K +T
Sbjct:   413 EADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTT 472

Query:   189 VDTLKQQY-RFVPAK--YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L Q++ R  P +   +   L+Y+  E+    T++F R+      + ++   L   A 
Sbjct:   473 AKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNAT 532

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              I G +SQ +R+ AL  F+ G+CN L+ TDVASRG+DI  +++VINY+ P   + Y+H  
Sbjct:   533 EIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRV 592

Query:   306 XXXXXXXXXXXXISLVNQ 323
                         I+L  +
Sbjct:   593 GRTARAGRSGRAITLAGE 610


>ASPGD|ASPL0000072637 [details] [associations]
            symbol:AN4903 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
            EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
            HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
        Length = 525

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 137/347 (39%), Positives = 209/347 (60%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D IG ++TGSGKT AF++PILQ   + AE+   +   FA +L+PTRELA+QI EQ +A
Sbjct:   132 GRDCIGGSRTGSGKTIAFSVPILQ---KWAEDPFGI---FAVILTPTRELALQIFEQIKA 185

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK---YL 125
             + +  S++  ++ GG DM  Q + L  RPH+VVATPGRL DH+  +   ++  LK    +
Sbjct:   186 ISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMV 245

Query:   126 VLDEADRLLNDDFEKSLDEI---LNVIP--RMRQTYLFSATMTKKVKKLQ---RACLKNP 177
             VLDEADRLL+      L ++   L+ +P    RQT LF+AT+T +V+ L+   +   K P
Sbjct:   246 VLDEADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPP 305

Query:   178 V---KIEAASKYSTVDTLKQQYRFVPAKYKDCYL-VYILTEVSAS-STMVFTRTCDATRL 232
             +   +I   +K +   TL+  Y  VP  +++ +L V + TE + + S +VFT T  +  L
Sbjct:   306 IFVTEISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADL 365

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L  +LR+LG R   +   + QS+R   L +F+A    +L+ TDVASRGLDIPSV +V+N+
Sbjct:   366 LERLLRSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNF 425

Query:   293 DIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
             ++P N  DY+H              ++LV Q +++  L IE+ IG+K
Sbjct:   426 EVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEERIGRK 472


>UNIPROTKB|F1NQV5 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
            Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
        Length = 758

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 129/329 (39%), Positives = 187/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AF LP+L+ L+      R  P     VL PTREL IQ+    + 
Sbjct:   217 GKDICACAATGTGKTAAFILPVLERLIY---KPRQAPITRVLVLVPTRELGIQVHSVTKQ 273

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    S+   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   274 LAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILD 333

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +  R RQT LFSATMT++VK L    LKNP +I   S    
Sbjct:   334 EADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDV 393

Query:   189 VDTLKQQY-RFVPAKYKDCYLVY--ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D   +   +LT       M+FT+T      + ++L  +G R  
Sbjct:   394 APFLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVG 453

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P  +K Y+H  
Sbjct:   454 ELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRV 513

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   514 GRTARAGRAGRSVSLVGEEERKMLKEIVK 542


>UNIPROTKB|F1Q073 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
            Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
        Length = 767

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 128/329 (38%), Positives = 186/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+      R  P     VL PTREL IQ+    + 
Sbjct:   224 GKDICACAATGTGKTAAFALPVLERLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQ 280

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   281 LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILD 340

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   S    
Sbjct:   341 EADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 400

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D    +  +LT       M+FT+T      + ++L  +G +  
Sbjct:   401 APFLRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 460

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   461 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 520

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   521 GRTARAGRAGRSVSLVGEEERKMLKEIVK 549


>UNIPROTKB|J9P9C6 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
            Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
        Length = 788

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 128/329 (38%), Positives = 186/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+      R  P     VL PTREL IQ+    + 
Sbjct:   245 GKDICACAATGTGKTAAFALPVLERLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQ 301

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   302 LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILD 361

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   S    
Sbjct:   362 EADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 421

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D    +  +LT       M+FT+T      + ++L  +G +  
Sbjct:   422 APFLRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 481

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   482 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 541

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   542 GRTARAGRAGRSVSLVGEEERKMLKEIVK 570


>UNIPROTKB|Q96GQ7 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
            EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
            EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
            EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
            EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
            UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
            MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
            SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
            DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
            UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
            neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
            OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
            NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
            Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
        Length = 796

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 128/329 (38%), Positives = 185/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+      R  P     VL PTREL IQ+      
Sbjct:   255 GKDICACAATGTGKTAAFALPVLERLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTRQ 311

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   312 LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILD 371

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   S    
Sbjct:   372 EADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 431

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D    +  +LT       M+FT+T      + ++L  +G +  
Sbjct:   432 APFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 491

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   492 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 551

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   552 GRTARAGRAGRSVSLVGEDERKMLKEIVK 580


>UNIPROTKB|A1A4H6 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
            ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
            GeneID:514567 KEGG:bta:514567 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
            Uniprot:A1A4H6
        Length = 765

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 128/329 (38%), Positives = 185/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+      R  P     VL PTREL IQ+    + 
Sbjct:   224 GKDICACAATGTGKTAAFALPVLERLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTKQ 280

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    S+   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   281 LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILD 340

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   S    
Sbjct:   341 EADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 400

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D    +  +L        M+FT+T      + ++L  +G +  
Sbjct:   401 APFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 460

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   461 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 520

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   521 GRTARAGRAGRSVSLVGEEERKMLKEIVK 549


>MGI|MGI:2385884 [details] [associations]
            symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
            GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
            EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
            EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
            RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
            SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
            Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
            KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
            Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
            GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
        Length = 760

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 129/329 (39%), Positives = 185/329 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+     Q  V      VL PTREL IQ+    + 
Sbjct:   221 GKDICACAATGTGKTAAFALPVLERLI-YKPRQAAVTRVL--VLVPTRELGIQVHSVTKQ 277

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    S+   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+LD
Sbjct:   278 LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILD 337

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   S    
Sbjct:   338 EADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 397

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P +  D    +  +L        M+FT+T      + ++L  LG +  
Sbjct:   398 APFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVG 457

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   458 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRV 517

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   518 GRTARAGRAGRSVSLVGEEERKMLKEIVK 546


>UNIPROTKB|E1C187 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
            IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
            Uniprot:E1C187
        Length = 759

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 129/330 (39%), Positives = 187/330 (56%)

Query:     9 GKDLIGLAQTGS-GKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             GKD+   A TG+ GKT AF LP+L+ L+      R  P     VL PTREL IQ+    +
Sbjct:   217 GKDICACAATGTVGKTAAFILPVLERLIY---KPRQAPITRVLVLVPTRELGIQVHSVTK 273

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L    S+   + VGG+D+  Q  AL   P I++ATPGRL+DHL N   F L +++ L+L
Sbjct:   274 QLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLIL 333

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L++ FE+ + EI+ +  R RQT LFSATMT++VK L    LKNP +I   S   
Sbjct:   334 DEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTD 393

Query:   188 TVDTLKQQY-RFVPAKYKDCYLVY--ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
                 L+Q++ R  P +  D   +   +LT       M+FT+T      + ++L  +G R 
Sbjct:   394 VAPFLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRV 453

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               + G++SQ++RL AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P  +K Y+H 
Sbjct:   454 GELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHR 513

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                          +SLV + E +   +I K
Sbjct:   514 VGRTARAGRAGRSVSLVGEEERKMLKEIVK 543


>UNIPROTKB|A4QYM6 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
            ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
            KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
        Length = 790

 Score = 553 (199.7 bits), Expect = 2.2e-53, P = 2.2e-53
 Identities = 124/315 (39%), Positives = 178/315 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A TGSGKT AF +PIL+ LL      + VP     +L+PTRELAIQ       
Sbjct:   292 GKDVVGGAVTGSGKTAAFVVPILERLLY---RPKKVPTSRVVILAPTRELAIQCHAVATK 348

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L S   ++  + VGG+ +  Q   L  RP +++ATPGR +DH+ N+  F++ T++ LVLD
Sbjct:   349 LASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLD 408

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L D F   L+EIL  +P+ RQT LFSATMT  V  L R  L  PV++   S+  T
Sbjct:   409 EADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKT 468

Query:   189 VDTLKQQY-RFVPAKYKDC--YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
             V TL Q++ R  P + +    YLVY+   +     ++F R         ++   LG    
Sbjct:   469 VVTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCA 528

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G MSQ +R+ ++  F+ G+ + L+ TD+ASRGLDI  VD VINY+ P + + Y+H  
Sbjct:   529 ELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRV 588

Query:   306 XXXXXXXXXXXXISL 320
                         I+L
Sbjct:   589 GRTARAGRSGTAITL 603


>ZFIN|ZDB-GENE-031001-8 [details] [associations]
            symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
            RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
            PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
            NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
        Length = 776

 Score = 547 (197.6 bits), Expect = 8.2e-53, P = 8.2e-53
 Identities = 124/329 (37%), Positives = 183/329 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AF LP+L+ L+      R        VL PTREL IQ+      
Sbjct:   238 GKDICACAATGTGKTAAFMLPVLERLIY---KPRETQVTRVLVLVPTRELGIQVHTVARQ 294

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   + VGG+D+  Q  AL   P +++ATPGRL+DHL NT  F L  ++ L+LD
Sbjct:   295 LAQFTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILD 354

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ FE+ + EI+ +    RQT LFSATM+++VK L    LK PV+I   S    
Sbjct:   355 EADRMLDEYFEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDV 414

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R  P K  D    +  +LT       M+FT+T      + ++L  +G +  
Sbjct:   415 APYLRQEFVRIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVG 474

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G++SQ++RL +L +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H  
Sbjct:   475 ELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRV 534

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         +SLV + E +   +I K
Sbjct:   535 GRTARAGKVGRSVSLVGETERKMLKEIVK 563


>CGD|CAL0000864 [details] [associations]
            symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
            "cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
            GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
            STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 126/324 (38%), Positives = 190/324 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  AQTGSGKTGA+ +PI++ LL        V      +L+PTRELA+Q+ E  + 
Sbjct:   167 GKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKV-----IILTPTRELALQVYEFGKK 221

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             L   ++ L   + VGG+++ QQ   L  RP IV+ATPGRL+DH+ N+  FS+  ++ LV+
Sbjct:   222 LSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVI 281

Query:   128 DEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             DEADR+L + F+  L EIL++IP+  RQT LFSATM  +++ L +  L+ PV+I      
Sbjct:   282 DEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341

Query:   187 STVDTLKQQYRFVPAKYKDCY---LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
             S    L QQ  FV  + +D     L+Y L +  +S  +VF    +    L ++L  LG +
Sbjct:   342 SVASKLLQQ--FVRIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK 399

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
                + G ++Q +RL  +  FK+ E  +LICTD+A+RGLDIP +++VINYD+P   + Y+H
Sbjct:   400 VSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLH 459

Query:   304 XXXXXXXXXXXXXXISLVNQYELE 327
                           I+ V +   E
Sbjct:   460 RVGRTARAGRDGTSITFVGESSQE 483


>UNIPROTKB|Q5ACK7 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
            response to drug" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
            GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
            GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
            ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
            KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 126/324 (38%), Positives = 190/324 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  AQTGSGKTGA+ +PI++ LL        V      +L+PTRELA+Q+ E  + 
Sbjct:   167 GKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKV-----IILTPTRELALQVYEFGKK 221

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             L   ++ L   + VGG+++ QQ   L  RP IV+ATPGRL+DH+ N+  FS+  ++ LV+
Sbjct:   222 LSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVI 281

Query:   128 DEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             DEADR+L + F+  L EIL++IP+  RQT LFSATM  +++ L +  L+ PV+I      
Sbjct:   282 DEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341

Query:   187 STVDTLKQQYRFVPAKYKDCY---LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
             S    L QQ  FV  + +D     L+Y L +  +S  +VF    +    L ++L  LG +
Sbjct:   342 SVASKLLQQ--FVRIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK 399

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
                + G ++Q +RL  +  FK+ E  +LICTD+A+RGLDIP +++VINYD+P   + Y+H
Sbjct:   400 VSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLH 459

Query:   304 XXXXXXXXXXXXXXISLVNQYELE 327
                           I+ V +   E
Sbjct:   460 RVGRTARAGRDGTSITFVGESSQE 483


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 130/331 (39%), Positives = 183/331 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFFACVLSPTRELAIQISE 64
             AGKD++  AQTG+GKT  F LPIL+ L +   +  NQ       A +L+PTRELA QI +
Sbjct:    37 AGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVR-----ALILTPTRELAAQIQD 91

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
                  G  + L+ AV+ GGV +  Q   + K   I+VATPGRLMD L N        L+ 
Sbjct:    92 NVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEI 150

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LVLDEADR+L+  F + + +IL ++P  RQ  LFSAT + ++++L +  + NPV+I  + 
Sbjct:   151 LVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP 210

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
               ST  T++Q       K K   LV ++ E +    +VF RT      LA  L   G  A
Sbjct:   211 ANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTA 270

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I G+ SQ  R  AL  FKAGE  IL+ TD+A+RG+DIP +  V+N+++P  ++DY+H 
Sbjct:   271 AAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHR 330

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKL 335
                          ISLV+  E      IE+L
Sbjct:   331 IGRTGRAGEVGKAISLVSAIEAPELFAIERL 361


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 130/331 (39%), Positives = 183/331 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFFACVLSPTRELAIQISE 64
             AGKD++  AQTG+GKT  F LPIL+ L +   +  NQ       A +L+PTRELA QI +
Sbjct:    37 AGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVR-----ALILTPTRELAAQIQD 91

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
                  G  + L+ AV+ GGV +  Q   + K   I+VATPGRLMD L N        L+ 
Sbjct:    92 NVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEI 150

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LVLDEADR+L+  F + + +IL ++P  RQ  LFSAT + ++++L +  + NPV+I  + 
Sbjct:   151 LVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP 210

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
               ST  T++Q       K K   LV ++ E +    +VF RT      LA  L   G  A
Sbjct:   211 ANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTA 270

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I G+ SQ  R  AL  FKAGE  IL+ TD+A+RG+DIP +  V+N+++P  ++DY+H 
Sbjct:   271 AAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHR 330

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKL 335
                          ISLV+  E      IE+L
Sbjct:   331 IGRTGRAGEVGKAISLVSAIEAPELFAIERL 361


>WB|WBGene00022148 [details] [associations]
            symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
            ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
            EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
            UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
            OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
        Length = 739

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 121/320 (37%), Positives = 184/320 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AF LPIL+ ++   +           VL PTRELAIQ+ + F  
Sbjct:   185 GKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVL---VLVPTRELAIQVFQVFRK 241

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L + I L   +  GG+D+  Q  AL   P +VVATPGRL+DHL N+  F+L  ++ LVLD
Sbjct:   242 LSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLD 301

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L + F   ++E++ +  + RQT LFSATMT+++ +L    L+ PVKI       T
Sbjct:   302 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 361

Query:   189 VDTLKQQYRFVPAKY---KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++  + A     ++  +  ++T    ++T+VF RT    + + ++L  LG +  
Sbjct:   362 ALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVG 421

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              +   ++Q +R+ +L+KFK  E ++L+ TD+ASRGLDI  V  VIN ++P + K YIH  
Sbjct:   422 QMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRV 481

Query:   306 XXXXXXXXXXXXISLVNQYE 325
                         ISLV + E
Sbjct:   482 GRTARAGKAGRSISLVGEDE 501


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 122/332 (36%), Positives = 184/332 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQFE 67
             GKD++  AQTG+GKT AF LP++Q  +E   + +       A VL PTRELA Q+ +  +
Sbjct:    43 GKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQ 102

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             A   G  L+   + GG  M  Q   L     I++ATPGRL+DH  + K   LG ++ LVL
Sbjct:   103 AYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVL 161

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F   L  +L  +  +RQT  FSAT   K+K +    +++P++++     S
Sbjct:   162 DEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNS 221

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T +T++Q    V  K K   L Y++   +    +VFT+T   +  LA  L+  G +A+ I
Sbjct:   222 TAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSI 281

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
             +G  SQ  R  AL+ FKAG+   LI TDVA+RGLDI  ++ V+NYD+P  ++DY+H    
Sbjct:   282 NGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       +SL++  E      IE+L+  +
Sbjct:   342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTR 373


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 122/332 (36%), Positives = 184/332 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQFE 67
             GKD++  AQTG+GKT AF LP++Q  +E   + +       A VL PTRELA Q+ +  +
Sbjct:    43 GKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQ 102

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             A   G  L+   + GG  M  Q   L     I++ATPGRL+DH  + K   LG ++ LVL
Sbjct:   103 AYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVL 161

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F   L  +L  +  +RQT  FSAT   K+K +    +++P++++     S
Sbjct:   162 DEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNS 221

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T +T++Q    V  K K   L Y++   +    +VFT+T   +  LA  L+  G +A+ I
Sbjct:   222 TAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSI 281

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
             +G  SQ  R  AL+ FKAG+   LI TDVA+RGLDI  ++ V+NYD+P  ++DY+H    
Sbjct:   282 NGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       +SL++  E      IE+L+  +
Sbjct:   342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTR 373


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 126/332 (37%), Positives = 188/332 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEI-AENQRTVPAFFACVLSPTRELAIQISEQFE 67
             G+D++  AQTG+GKT AFALPILQ ++E  +E  ++       +L+PTRELA Q++E  E
Sbjct:    38 GQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVL--ILTPTRELAAQVAENVE 95

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             A    ++     + GGV +  Q   L +   I+VATPGRL++HLT     SL ++ +LVL
Sbjct:    96 AYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRLLEHLTACN-LSLSSVDFLVL 154

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F   + +IL  + + RQ  LFSAT +  VKKL    +  P  I A  + +
Sbjct:   155 DEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNT 214

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T DT+ Q    V  + K   L  ++ + +    +VFT T DA   L   L   G  +  +
Sbjct:   215 TADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVV 274

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G  +Q  R  AL +F +G+  +L+ T+VA+RGLDIPS++ V+N+D+P  ++DY+H    
Sbjct:   275 HGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGR 334

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       IS V++ E      IEKLIG+K
Sbjct:   335 TGRAGKSGVAISFVSREEERTLADIEKLIGQK 366


>DICTYBASE|DDB_G0282741 [details] [associations]
            symbol:ddx18 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
            GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
            RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
            EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
            KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
        Length = 602

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 120/298 (40%), Positives = 175/298 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKDL+G A+TGSGKT AF +P ++ L++   N +        ++SPTRELA+QI      
Sbjct:   156 GKDLLGAARTGSGKTLAFLIPAIEVLVK--SNFKPRNGTGVIIISPTRELALQIYGVARE 213

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    +    +++GG     +   L K  +++VATPGRL+DHL NTKGF    LK L++D
Sbjct:   214 LMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIID 273

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKI--EAASK 185
             EADR+L   FE+ + +I+  +P+ RQT LFSAT T+KV  + +  L N PV +  +   +
Sbjct:   274 EADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDERE 333

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              STV+ L+Q Y   P++ +   L   L +  +   +VF  +C+A +  A +L  +    +
Sbjct:   334 ISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVL 393

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + G   Q KR     +F   E  ILICTDVA+RGLDIPSVD +I YD P + K+YIH
Sbjct:   394 ELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIH 451


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 125/332 (37%), Positives = 183/332 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             A KD+IG AQTG+GKT AF +P+++ +     N  + P   A V++PTRELAIQ+SE+  
Sbjct:    39 ANKDVIGQAQTGTGKTAAFGIPLVEKI-----NPES-PNIQAIVIAPTRELAIQVSEELY 92

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              +G     R   + GG D+ +Q  AL K PHI+V TPGRL+DH+ N +   L T+  +VL
Sbjct:    93 KIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHI-NRRTMRLQTVNTVVL 151

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +LN  F + ++ IL+ +P   QT LFSATM   +K++    + NP  ++  +K  
Sbjct:   152 DEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEM 211

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV  ++Q Y  V  + K   L  +L   S    +VF RT      L   L   G  A  I
Sbjct:   212 TVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGI 271

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G ++Q+KR+ AL KFK G   +L+ TDVA+RGLDI  V  V N+D+P + + Y+H    
Sbjct:   272 HGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGR 331

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       ++ +   E +    IE+   +K
Sbjct:   332 TGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 363


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 125/328 (38%), Positives = 184/328 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AGKD++G AQTG+GKTGAFALP+L  +       +T P     VL+PTRELA+Q++E F 
Sbjct:    42 AGKDILGQAQTGTGKTGAFALPLLNKV-----TSQTTPQIL--VLAPTRELAVQVAEAFS 94

Query:    68 ALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
             +    + +     + GG  M QQ  AL + P ++V TPGR+MDH+       L TL+ LV
Sbjct:    95 SYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVMDHMRRGT-LKLETLQALV 153

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD +L   F   ++ IL   P  RQ  LFSATM +++K++    LKN   I  A+ +
Sbjct:   154 LDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASH 213

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             +TVD+++Q++  V    K   LV +L   +    ++F RT ++   LA  L   G  + P
Sbjct:   214 TTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSP 273

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             + G M+Q  R  A+ + K G+ +ILI TDVA+RGLD+  +  V+NYDIP +++ Y+H   
Sbjct:   274 LHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIG 333

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEK 334
                        I  V   E+     IE+
Sbjct:   334 RTGRAGRTGMAILFVTSREMRMLRTIER 361


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 127/335 (37%), Positives = 184/335 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIA---ENQRTVPAF-FACVLSPTRELAIQISE 64
             G+DL+  AQTG+GKTG FALPIL+ L       ++QR  P      VL+PTRELA Q+ +
Sbjct:    38 GRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHD 97

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
              F+     +    A + GGV M  Q  A+ +   ++VA PGRL+D L       L  ++ 
Sbjct:    98 SFKLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEI 156

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LVLDEADR+L+  F   + ++L  +P  RQ  LFSAT +K +  L    L NP +IE   
Sbjct:   157 LVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP 216

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
               +TV+ ++Q+   +PA +K   L +++T  +    +VFTRT      LA  L   G  A
Sbjct:   217 PNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSA 276

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
             + I G+ SQ+ R  AL  FKAGE  IL+ TD+A+RGLDI  +  V+N+++P   +DY+H 
Sbjct:   277 VAIHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHR 336

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                          ISLV   E +    IE++  +K
Sbjct:   337 IGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>TAIR|locus:2152099 [details] [associations]
            symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
            EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
            RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
            ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
            EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
            GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
            PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
            GermOnline:AT5G65900 Uniprot:Q9SB89
        Length = 633

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 122/298 (40%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A+TGSGKT AF +P ++ L  +    R        V+ PTRELAIQ     + 
Sbjct:   191 GEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVL--VICPTRELAIQSYGVAKE 248

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    S     ++GG     +   L K  +++VATPGRL+DHL NT GF    LK+LV+D
Sbjct:   249 LLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMD 308

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA--ASKY 186
             EADR+L  +FE+ L +ILN++P+ RQT LFSAT + KV+ L R  L +PV I+     K 
Sbjct:   309 EADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKE 368

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASST-MVFTRTCDATRLLALMLRNLGQRAI 245
              T + L+Q Y  VP+  +  +L+  L         MVF  TC +T+  A + R +    +
Sbjct:   369 VTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCL 428

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G + Q+KR     +F   E  IL+CT+VA+RGLD P VD ++ YD P N  DYIH
Sbjct:   429 EIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486


>TAIR|locus:2086909 [details] [associations]
            symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0034968
            "histone lysine methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
            RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
            SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
            EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
            GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
            ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
            Uniprot:Q9LIH9
        Length = 568

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 119/297 (40%), Positives = 172/297 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P ++ L +   + R        V+ PTRELAIQ     E 
Sbjct:   126 GKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI--VICPTRELAIQTKNVAEE 183

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    S   ++++GG +   +   +    ++V+ATPGRL+DHL NTK F    LK LV+D
Sbjct:   184 LLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVID 243

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA--ASKY 186
             EADR+L ++FE+ +++IL ++P+ RQT LFSAT T KVK L R  L +PV ++     + 
Sbjct:   244 EADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRK 303

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              T + L+Q Y  VP+K +   L+  L +      MVF  TC + +    +++        
Sbjct:   304 VTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSD 363

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             I G M Q++R      F   +  IL+CTDVA+RGLDIPSVD +I YD P    +YIH
Sbjct:   364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH 420


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 123/331 (37%), Positives = 180/331 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  AQTG+GKT  F LP+LQ L+    + +      A +L+PTRELA QI E    
Sbjct:    38 GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                 +++R  V+ GGV +  Q + L     ++VATPGRL+D L +     L  ++ LVLD
Sbjct:    98 YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLD 156

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F   +  +L  +P  RQ  LFSAT +  +K L    L NP++IE A + + 
Sbjct:   157 EADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA 216

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
              D + Q   FV  K K   L +++ + +    +VFTRT      LA  L   G R+  I 
Sbjct:   217 SDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G+ SQ  R  AL  FK+G+  +L+ TD+A+RGLDI  +  V+NY++P   +DY+H     
Sbjct:   277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      +SLV   E +    IEKL+ K+
Sbjct:   337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 118/329 (35%), Positives = 180/329 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++  AQTG+GKT  F LP+LQ L     N+ +     A +L+PTRELA QISE  E
Sbjct:    42 SGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIE 101

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G  ++L   V+ GGV +  Q   L +   ++VATPGRL+D L N +      L+  +L
Sbjct:   102 VYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFIL 160

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F + + +++  +P+ RQ  LFSAT + +++ L +  + NP++I   ++ S
Sbjct:   161 DEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENS 220

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T + + Q    V  K K   L +++ E +    +VFT+T      L   L   G  A  I
Sbjct:   221 TAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAI 280

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G+ SQ  R  AL  FK G   IL+ TD+A+RG+DI  +  V+N+D+P   +DY+H    
Sbjct:   281 HGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGR 340

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                       +SLV   EL+    IE +I
Sbjct:   341 TARAGNTGQALSLVCADELDLLWGIEHVI 369


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 121/332 (36%), Positives = 184/332 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLE--IAENQRTVPAFFACVLSPTRELAIQISEQF 66
             GKD++  AQTG+GKT  F LP+L+ L +   A++ +T     A VL+PTRELA Q+ E  
Sbjct:    38 GKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTR----ALVLTPTRELAAQVGESV 93

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
             E  G  + LR AV+ GGV +  Q   L     ++VATPGRL+D L          L+ LV
Sbjct:    94 ETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILV 152

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEADR+L+  F + + +IL ++P  RQ  +FSAT + ++++L +  + +PV+I    + 
Sbjct:   153 LDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRN 212

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             +   T+KQ    V    K   L+ ++ + +    +VF+RT      LA  L      A  
Sbjct:   213 AAATTVKQWICPVDKTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAA 272

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I G+ SQ  R  AL  FK+GE  +L+ TD+A+RGLDI  +  V+N+D+P   +DY+H   
Sbjct:   273 IHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 332

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                        +SLV+  E++    IE+LI +
Sbjct:   333 RTGRAGATGQAVSLVSSEEIKLLKDIERLINR 364


>SGD|S000003931 [details] [associations]
            symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
            assembly and function" species:4932 "Saccharomyces cerevisiae"
            [GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
            [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
            EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
            RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
            DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
            PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
            KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
            Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
        Length = 752

 Score = 525 (189.9 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 119/303 (39%), Positives = 180/303 (59%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE---Q 65
             GKD+I  A TGSGKT AF +PI++ LL        + +    VL PTRELAIQ+++   Q
Sbjct:   268 GKDIIAGAVTGSGKTAAFMIPIIERLLY---KPAKIASTRVIVLLPTRELAIQVADVGKQ 324

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
                  SGI+   AV  GG+++ QQ   L  RP IV+ATPGR +DH+ N+  F++ +++ L
Sbjct:   325 IARFVSGITFGLAV--GGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEIL 382

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             V+DEADR+L + F+  L+EI+ ++P  RQ  LFSATM  K+K L    LK PV+I     
Sbjct:   383 VMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPP 442

Query:   186 YSTVDTLKQQYRFVPAK--YKDCYLVYILTEVSASST---MVFTRTCDATRLLALMLRNL 240
                   L Q++  +  +   K   L  ++ ++  +     +VF    +    L +++  L
Sbjct:   443 KKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 502

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G ++Q +RL ++NKFK  E  +LICTD+ASRGLDIP +++VINYD+P + + 
Sbjct:   503 GMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEI 562

Query:   301 YIH 303
             Y+H
Sbjct:   563 YLH 565


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 527 (190.6 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 115/299 (38%), Positives = 174/299 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  A TGSGKT AF LP+L+ LL      R +      +L PTRELA+Q     E 
Sbjct:   227 GKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVL---ILLPTRELALQCQSVMEN 283

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   ++VGG+    Q + L K P +V+ATPGRL+DHL N  G  L  L+ L+LD
Sbjct:   284 LAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILD 343

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRLL+  F+  +++I+   P  RQT LFSAT+  +VK L +  L+ P++++  +    
Sbjct:   344 EADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQV 403

Query:   189 VDTLKQQY-RFVPAKYKD--CYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRA 244
               TL+Q++ +  P    D    L+ + T V +   T++F R+      L ++      +A
Sbjct:   404 TSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKA 463

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
               + G++SQ +R  +L +F+ G+ N L+ +DVASRGLDI  V  VINY++P N  +YIH
Sbjct:   464 AELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIH 522


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 126/330 (38%), Positives = 182/330 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             KD+IG AQTG+GKT AF +PI++ +     N +   A  A V++PTRELAIQ+SE+   +
Sbjct:    40 KDVIGQAQTGTGKTAAFGIPIVEKV-----NVKN-SAVQALVVAPTRELAIQVSEELYKI 93

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G+   +R   + GG D+ +Q  AL K PH++V TPGR++DH+ N     L  +  +VLDE
Sbjct:    94 GAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHI-NRGTLRLEHVHTVVLDE 152

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             AD +LN  F + ++ IL+ +P  RQT LFSATM   ++++    +  P  ++  +K  TV
Sbjct:   153 ADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTV 212

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
               ++Q Y  V  K K   L  +L   +    +VF RT      LA  L   G  A  I G
Sbjct:   213 PNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              +SQ+KRL  L KFK G   IL+ TDVA+RGLDI  V  V N+DIP + + Y+H      
Sbjct:   273 DLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     ++ V   E+     IE+   +K
Sbjct:   333 RAGKTGVAMTFVTPREIGQLHHIERTTKRK 362


>TAIR|locus:2130918 [details] [associations]
            symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
            OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
            PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
            ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
            PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
            KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
            PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
            GermOnline:AT4G16630 Uniprot:Q9ZRZ8
        Length = 789

 Score = 526 (190.2 bits), Expect = 3.0e-50, P = 3.0e-50
 Identities = 121/334 (36%), Positives = 179/334 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL   A TGSGKT AFALP L+ LL      + V A    +L+PTRELA+QI    + 
Sbjct:   204 GRDLCASAITGSGKTAAFALPTLERLLF---RPKRVFATRVLILTPTRELAVQIHSMIQN 260

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L     ++C ++VGG+ + +Q + L   P IVVATPGR++DHL N+    L  L  L+LD
Sbjct:   261 LAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 320

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRLL   F   + E++ + P+ RQT LFSATMT++VK+L +  L  P+++ A      
Sbjct:   321 EADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARR 380

Query:   189 VDTLKQQY---RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L ++    R      ++  L+ + T    S  ++F+ T  A   L ++    G +A 
Sbjct:   381 PPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAA 440

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G+++Q++RL +L  F+  E + LI TDVA+RGLDI  V  VINY  P     Y+H  
Sbjct:   441 ELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRV 500

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                         ++ V   +      I K +G K
Sbjct:   501 GRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSK 534


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 118/295 (40%), Positives = 171/295 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+IG AQTG+GKT AF LP+L    ++  ++ +V      V++PTRELAIQ+ E+   
Sbjct:    39 GKDIIGQAQTGTGKTAAFGLPLLD---KVDTHKESVQGI---VIAPTRELAIQVGEELYK 92

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G    +R   + GG D+ +Q  AL K PHI+V TPGR++DH+ N K   L  ++ +VLD
Sbjct:    93 IGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLD 151

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F + ++ IL  +P   QT LFSATM   ++++    +  P  I+  +K  T
Sbjct:   152 EADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  ++Q Y  V  K K   L  +L   S    +VF RT      L+  L   G  A  I 
Sbjct:   212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             G ++Q+KR+  L KFK G   +L+ TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   272 GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
            helicase, putative" species:5833 "Plasmodium falciparum"
            [GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
            EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
            EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
            Uniprot:C6KTE4
        Length = 601

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 116/296 (39%), Positives = 173/296 (58%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD++G A+TGSGKT AF +P +  L  I    +        ++SPTREL +QI +  +
Sbjct:   184 SGKDILGAAKTGSGKTLAFLVPSINILYNIKFLPKNGTGVL--IISPTRELCLQIYQVCK 241

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L   I     +++GG+   ++        +I++ATPGRL+DH+ NTK F    L  L++
Sbjct:   242 DLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLII 301

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADRLL   FE+ ++ I+  +P+ RQT LFSAT T KV+ L R  L+ P+ IE  +K +
Sbjct:   302 DEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIA 361

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV+ L+Q Y  V    +   L   L +  +   MVF   C + +    +L  +      I
Sbjct:   362 TVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCI 421

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              G   Q+KRL + + F A +C IL+CT+VA+RGLDIP+V+ +I YD P +SK+YIH
Sbjct:   422 HGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIH 477


>UNIPROTKB|C6KTE4 [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
            ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
            GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
            ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
        Length = 601

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 116/296 (39%), Positives = 173/296 (58%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD++G A+TGSGKT AF +P +  L  I    +        ++SPTREL +QI +  +
Sbjct:   184 SGKDILGAAKTGSGKTLAFLVPSINILYNIKFLPKNGTGVL--IISPTRELCLQIYQVCK 241

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L   I     +++GG+   ++        +I++ATPGRL+DH+ NTK F    L  L++
Sbjct:   242 DLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLII 301

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADRLL   FE+ ++ I+  +P+ RQT LFSAT T KV+ L R  L+ P+ IE  +K +
Sbjct:   302 DEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIA 361

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV+ L+Q Y  V    +   L   L +  +   MVF   C + +    +L  +      I
Sbjct:   362 TVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCI 421

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              G   Q+KRL + + F A +C IL+CT+VA+RGLDIP+V+ +I YD P +SK+YIH
Sbjct:   422 HGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIH 477


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 125/330 (37%), Positives = 181/330 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             A  D++  AQTG+GKT AFALPILQ L+ +   Q   P   A VL+PTRELA Q+ + F 
Sbjct:    41 AKHDVMARAQTGTGKTAAFALPILQQLISV---QPCKPELRALVLTPTRELAQQVHKSFC 97

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    +   +  GGV   +Q   L     I++ATPGRL+D L  T+  SL  ++ LV 
Sbjct:    98 HYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD-LLRTESVSLSNIETLVF 156

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F++ +D+I   +P+ +QT LFSAT    + K+ +  L  P  +E   K  
Sbjct:   157 DEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNK 216

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
               D ++Q    V A  K     +++   +    +VFTRT      LA  +   G +++ I
Sbjct:   217 AADDVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAI 276

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G  SQ  R  AL++FK G+   LI TDVA+RG+DI  +  VINY++P N++DY+H    
Sbjct:   277 HGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGR 336

Query:   308 XXXXXXXXXXISLVNQYELEWYLQ-IEKLI 336
                       +SLV+  E EW L  IE+L+
Sbjct:   337 TARAGNSGLAVSLVSPGE-EWLLTAIEELL 365


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 124/332 (37%), Positives = 185/332 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTV-PAFFACVLSPTRELAIQISEQFE 67
             +D++  AQTG+GKT  F LP+LQ L +     QR+  P   A +L+PTRELA+Q+ E   
Sbjct:    48 RDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVR 107

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             A G  + L+  V+ GGV +  Q   L +   I+VATPGRL+D L N    +L  +++ VL
Sbjct:   108 AYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVL 166

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F   +  IL ++P  RQ  LFSAT +K++K+L    L +P  IE A + +
Sbjct:   167 DEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNT 226

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
                 +      V  + K   L +++   +    +VFTRT      L+  L + G  +  I
Sbjct:   227 AAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAI 286

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G+ SQ+ R+ AL +FK G+  +L+ TDVA+RGLDI  +  VIN+++P  +KDY+H    
Sbjct:   287 HGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGR 346

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       ISLV+  E+     IEKL+  K
Sbjct:   347 TGRASNDGVAISLVSGDEVRLLRDIEKLLQSK 378


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 124/332 (37%), Positives = 185/332 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTV-PAFFACVLSPTRELAIQISEQFE 67
             +D++  AQTG+GKT  F LP+LQ L +     QR+  P   A +L+PTRELA+Q+ E   
Sbjct:    48 RDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVR 107

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             A G  + L+  V+ GGV +  Q   L +   I+VATPGRL+D L N    +L  +++ VL
Sbjct:   108 AYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVL 166

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F   +  IL ++P  RQ  LFSAT +K++K+L    L +P  IE A + +
Sbjct:   167 DEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNT 226

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
                 +      V  + K   L +++   +    +VFTRT      L+  L + G  +  I
Sbjct:   227 AAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAI 286

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G+ SQ+ R+ AL +FK G+  +L+ TDVA+RGLDI  +  VIN+++P  +KDY+H    
Sbjct:   287 HGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGR 346

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       ISLV+  E+     IEKL+  K
Sbjct:   347 TGRASNDGVAISLVSGDEVRLLRDIEKLLQSK 378


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 125/330 (37%), Positives = 181/330 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             A  D++  AQTG+GKT AFALPILQ L+ +   Q   P   A VL+PTRELA Q+ + F 
Sbjct:    41 AKHDVMARAQTGTGKTAAFALPILQQLISV---QPCKPELRALVLTPTRELAQQVHKSFC 97

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    +   +  GGV   +Q   L     I++ATPGRL+D L  T+  SL  ++ LV 
Sbjct:    98 HYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD-LLRTESVSLSNIETLVF 156

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  F++ +D+I   +P+ +QT LFSAT    + K+ +  L  P  +E   K  
Sbjct:   157 DEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNK 216

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
               D ++Q    V A  K     +++   +    +VFTRT      LA  +   G +++ I
Sbjct:   217 AADDVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAI 276

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G  SQ  R  AL++FK G+   LI TDVA+RG+DI  +  VINY++P N++DY+H    
Sbjct:   277 HGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGR 336

Query:   308 XXXXXXXXXXISLVNQYELEWYLQ-IEKLI 336
                       +SLV+  E EW L  IE+L+
Sbjct:   337 TARAGNSGLAVSLVSPGE-EWLLTAIEELL 365


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 126/331 (38%), Positives = 181/331 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++GLAQTG+GKT AFA PIL  L   A +   V      VL+PTRELA QI+  F  
Sbjct:    44 GRDIVGLAQTGTGKTLAFAAPILDRLSRNA-SPAPVRGTRVLVLAPTRELAGQIATSFGT 102

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
              G+G++LR  ++ GG  +  Q   L +  HI+VATPGRL+D L   +  SL  ++ L+LD
Sbjct:   103 YGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILD 161

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD++L+  F  +L  I   +P  RQT  FSATM K V+ L    L+NP ++  A   +T
Sbjct:   162 EADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATT 221

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
                ++Q+  FV    K   L+  + +    S +VFTRT      +   L      ++ I 
Sbjct:   222 AGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIH 281

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G+ SQS+R  AL  FKAG   IL+ TD+A+RG+ + ++  VINYD+P   + ++H     
Sbjct:   282 GNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRT 341

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      IS  ++ E      IEKL G K
Sbjct:   342 ARAGNSGVAISFCSRDERPTLRAIEKLTGLK 372


>FB|FBgn0021995 [details] [associations]
            symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
            "ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
            CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
            SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
            KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
            InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
            NextBio:836725 Uniprot:Q7JQN4
        Length = 782

 Score = 519 (187.8 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 118/320 (36%), Positives = 180/320 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+ G A TG+GKT A+ LP L+ LL    N + +      VL PTREL  Q+ +  + 
Sbjct:   194 GRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVL--VLVPTRELGAQVYQVTKQ 251

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L    ++   + +GG+D+  Q   L + P IV+ATPGRL+DH+ NT  F+L +++ L+LD
Sbjct:   252 LCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILD 311

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L++ F + + EI+N   + RQT LFSATM+++VK L    L  P+K+   +    
Sbjct:   312 EADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV 371

Query:   189 VDTLKQQY-RFVPAKYKDC--YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                L+Q++ R    K  D    L  ++        MVF +T      L ++L  LG RA 
Sbjct:   372 AFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAG 431

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G+++Q +RL +L KFK  + ++LI TDVA+RGLDI  V  VIN+ +P  ++ YIH  
Sbjct:   432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491

Query:   306 XXXXXXXXXXXXISLVNQYE 325
                         +SL  + E
Sbjct:   492 GRTARAGRAGISVSLAGEKE 511


>UNIPROTKB|I3LQ10 [details] [associations]
            symbol:LOC100626268 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
            Uniprot:I3LQ10
        Length = 684

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 123/324 (37%), Positives = 179/324 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD+   A TG+GKT AFALP+L+ L+      R  P     VL PTREL IQ+    + 
Sbjct:   248 GKDICACAATGTGKTAAFALPVLERLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTKQ 304

Query:    69 LGSG----ISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
             L       I+    +  GG+D+  Q  AL    P I++ATPGRL+DHL N   F L +++
Sbjct:   305 LAQSSLCVITTISGLFAGGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIE 364

Query:   124 YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 183
              L+LDEADR+L++ FE+ + EI+ +    RQT LFSATMT +VK L    LKNPV+I   
Sbjct:   365 VLILDEADRMLDEYFEEQMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVN 424

Query:   184 SKYSTVDTLKQQY-RFVPAKYKD--CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240
             S       L+Q++ R  P +  D    +  +L        M+FT+T      + ++L  +
Sbjct:   425 SNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM 484

Query:   241 GQRAIPISGHMSQSKR-LGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299
             G +   + G++SQ++R L AL +FK  + +IL+ TDVA+RGLDI  V  VIN+ +P   K
Sbjct:   485 GLQVGELHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIK 544

Query:   300 DYIHXXXXXXXXXXXXXXISLVNQ 323
              Y+H              +SL+ +
Sbjct:   545 HYVHRVGRTARAGRAGRSVSLLKE 568


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 124/335 (37%), Positives = 182/335 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIA---ENQRTVPAF-FACVLSPTRELAIQISE 64
             G+DL+  AQTG+GKTG FALPIL+ L       ++QR  P      VL+PTRELA Q+ E
Sbjct:    38 GRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHE 97

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
              F+     +    A + GGV M  Q  A+ +   ++VA PGRL+D L       L  ++ 
Sbjct:    98 SFKLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEI 156

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LVLDEADR+L+  F   + ++L  +P  RQ  LFSAT +  +  L    L NP +IE   
Sbjct:   157 LVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTP 216

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
               +TV+ ++Q+   + A +K   L +++T  +    +VFTRT      LA  L   G  A
Sbjct:   217 PNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAA 276

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
             + I G+ SQ+ R  AL  FKAG+  I++ TD+A+RGLDI  +  V+N+++P   +DY+H 
Sbjct:   277 VAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHR 336

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                          ISLV   E +    IE++  +K
Sbjct:   337 IGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 120/332 (36%), Positives = 180/332 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             + KD+IG AQTG+GKT AF +P+++ +     N  + P   A V++PTRELAIQ+SE+  
Sbjct:    39 SNKDVIGQAQTGTGKTAAFGIPLVEKI-----NPES-PNIQAIVIAPTRELAIQVSEELY 92

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              +G     +   + GG D+ +Q  AL K P+I+V TPGRL+DH+ N +   L  +  +V+
Sbjct:    93 KIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHI-NRRTIRLNNVNTVVM 151

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +LN  F   ++ IL+ +P   QT LFSATM   +K++    +  P  ++  +K  
Sbjct:   152 DEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEM 211

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV  ++Q Y  V  + K   L  +L   S    +VF RT      LA  L   G  A  I
Sbjct:   212 TVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGI 271

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G ++Q+KR+ AL KFK G   +L+ TDVA+RGLDI  V  V N+D+P + + Y+H    
Sbjct:   272 HGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGR 331

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                       ++ +   E      IE+   +K
Sbjct:   332 TGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 363


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 124/330 (37%), Positives = 175/330 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++GLAQTG+GKT AFALPIL  L +  E  R      A V++PTRELA QI++ F 
Sbjct:    37 AGRDVMGLAQTGTGKTAAFALPILHRLQQ-GERGRVR----ALVIAPTRELAEQINDSFV 91

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              LG    LR   + GGV +  Q   L     +VVA PGRL+DH+       L  L+ LVL
Sbjct:    92 TLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLDHIAQGT-IDLSRLEVLVL 150

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD++ +  F   +  +L  +P  RQT LFSATM   ++ L +  L +PV ++  +   
Sbjct:   151 DEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAP 210

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
              V      Y  V    K   L+ +L      S ++FTRT    + L   L   G RA  +
Sbjct:   211 AVTVAHALYP-VEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASL 269

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G++SQ++R  AL+ F+ G   IL+ TD+A+RG+D+  V  VINYDIP  ++ YIH    
Sbjct:   270 QGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGR 329

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                        +LV   +      IE+ +G
Sbjct:   330 TGRAARSGDAFTLVTSDDGAMVRAIERSLG 359


>UNIPROTKB|Q8EHT1 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 126/341 (36%), Positives = 187/341 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQAL---LEIAENQRTVPAF--FACVLSPTRELAIQI 62
             AG+DL+ L+QTGSGKT AF LP+LQ L   + +    ++VPA    A VL PTRELA+Q+
Sbjct:    52 AGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQV 111

Query:    63 SEQFEALGSGIS----LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS 118
             SE   AL S +S    L   +L GGV + QQ   L  +P +VVATPGRL+D  T +   S
Sbjct:   112 SEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSH-IS 170

Query:   119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P 177
             L  +K+LVLDEADRLL   F   + +++ ++P+ +QT LFSAT+ + +  L    L N P
Sbjct:   171 LDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP 230

Query:   178 VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
             +K+EA+++ + V  +++Q   V    K   L+ +L +      +VF    D    +A  L
Sbjct:   231 LKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRL 290

Query:   238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN 297
                G  A  + G   Q+ R   L  FKA    +L+ TD+ +RG+ + ++ +VIN D+PT+
Sbjct:   291 VKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTS 350

Query:   298 SKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
             +  Y+H              ISLV   E+     I  L  +
Sbjct:   351 APVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTAR 391


>TIGR_CMR|SO_1136 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 126/341 (36%), Positives = 187/341 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQAL---LEIAENQRTVPAF--FACVLSPTRELAIQI 62
             AG+DL+ L+QTGSGKT AF LP+LQ L   + +    ++VPA    A VL PTRELA+Q+
Sbjct:    52 AGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQV 111

Query:    63 SEQFEALGSGIS----LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS 118
             SE   AL S +S    L   +L GGV + QQ   L  +P +VVATPGRL+D  T +   S
Sbjct:   112 SEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSH-IS 170

Query:   119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P 177
             L  +K+LVLDEADRLL   F   + +++ ++P+ +QT LFSAT+ + +  L    L N P
Sbjct:   171 LDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP 230

Query:   178 VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
             +K+EA+++ + V  +++Q   V    K   L+ +L +      +VF    D    +A  L
Sbjct:   231 LKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRL 290

Query:   238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN 297
                G  A  + G   Q+ R   L  FKA    +L+ TD+ +RG+ + ++ +VIN D+PT+
Sbjct:   291 VKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTS 350

Query:   298 SKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
             +  Y+H              ISLV   E+     I  L  +
Sbjct:   351 APVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTAR 391


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 112/330 (33%), Positives = 174/330 (52%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D++  AQTG+GKT AFALPILQ L+   ++     A  A VL PTRELA+Q+ + F   
Sbjct:    39 QDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKY 98

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
               G  +R  +  GGV +  Q         +++ATPGRL+DHL      +L  L  LV DE
Sbjct:    99 AKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDE 157

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             ADR+L+  F   +  +L  +P  RQT LFSAT+   +    +  L++P +IE A   +T 
Sbjct:   158 ADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTA 217

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
               ++Q+   + +  K  ++ +++   +    ++F+RT      L   L  LG       G
Sbjct:   218 AQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHG 277

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              +SQ  R   L +FK G   +L+ TDVA+RGLDI  +  VIN+++P  ++DYIH      
Sbjct:   278 DLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTG 337

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     I+L +Q +     ++E L+ K+
Sbjct:   338 RAGSAGLAITLFSQEDALLLEEVETLLDKR 367


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 112/330 (33%), Positives = 174/330 (52%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D++  AQTG+GKT AFALPILQ L+   ++     A  A VL PTRELA+Q+ + F   
Sbjct:    39 QDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKY 98

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
               G  +R  +  GGV +  Q         +++ATPGRL+DHL      +L  L  LV DE
Sbjct:    99 AKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDE 157

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV 189
             ADR+L+  F   +  +L  +P  RQT LFSAT+   +    +  L++P +IE A   +T 
Sbjct:   158 ADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTA 217

Query:   190 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
               ++Q+   + +  K  ++ +++   +    ++F+RT      L   L  LG       G
Sbjct:   218 AQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHG 277

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              +SQ  R   L +FK G   +L+ TDVA+RGLDI  +  VIN+++P  ++DYIH      
Sbjct:   278 DLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTG 337

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                     I+L +Q +     ++E L+ K+
Sbjct:   338 RAGSAGLAITLFSQEDALLLEEVETLLDKR 367


>CGD|CAL0003464 [details] [associations]
            symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
            EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
            RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
            KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
        Length = 908

 Score = 348 (127.6 bits), Expect = 8.8e-49, Sum P(2) = 8.8e-49
 Identities = 81/209 (38%), Positives = 123/209 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G+A+TGSGKT AF LP+++ L       R      A +LSP+RELA+Q  +Q + 
Sbjct:   136 GRDVVGMARTGSGKTAAFVLPLIERL-----KSRQPGGVRAVILSPSRELALQTYKQVKE 190

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                G +L+  VL+GG  + +    +  +P I+V TPGR + HL     + L T++Y+V D
Sbjct:   191 FSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFD 249

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKY 186
             EADRL    F + L+E+L  +P  RQ+ LFSAT+ + +    +A L NPV  +++A SK 
Sbjct:   250 EADRLFEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKI 309

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV 215
             S  D L+  Y       ++  L+YIL EV
Sbjct:   310 S--DQLQMAYFTTKKNEREANLLYILQEV 336

 Score = 199 (75.1 bits), Expect = 8.8e-49, Sum P(2) = 8.8e-49
 Identities = 45/124 (36%), Positives = 66/124 (53%)

Query:   216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 275
             S  ST+VF  T      +  +LR+ G     I G + Q  R   L +F+ G  N+L+ TD
Sbjct:   393 SPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTD 452

Query:   276 VASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKL 335
             VA+RG+DIP +  VIN+ +P +SK +IH               S+VN+ EL + L +E  
Sbjct:   453 VAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELF 512

Query:   336 IGKK 339
             +GKK
Sbjct:   513 LGKK 516


>FB|FBgn0025140 [details] [associations]
            symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
            [GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
            evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
            EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
            UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
            DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
            EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
            KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
            GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
            PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
            Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
        Length = 680

 Score = 483 (175.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 109/298 (36%), Positives = 170/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+G AQTGSGKT AF +P ++ + ++    R        ++SPTREL++Q     + 
Sbjct:   224 GRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVI--IISPTRELSMQTFGVLKE 281

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   ++  LGK  +I+VATPGRL+DHL N+  F    L+ L++D
Sbjct:   282 LMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIID 341

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKY- 186
             E DR+L   FE+ L +I+N++P+ RQT LFSAT T +++ L +  LK+ P+ +       
Sbjct:   342 EVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQD 401

Query:   187 -STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +   +     
Sbjct:   402 TATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVT 461

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   E  IL+CTDVA+RGLDIP VD ++ YD P + ++YIH
Sbjct:   462 SIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH 519

 Score = 42 (19.8 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query:   321 VNQYELEWY------LQIEKLIGK 338
             +N++E  W       LQ+EKLI K
Sbjct:   556 LNEFEFSWQKIADIQLQLEKLIAK 579


>CGD|CAL0003050 [details] [associations]
            symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
            "ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
            "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
            InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
            RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
            GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
            Uniprot:Q5AK59
        Length = 565

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 115/300 (38%), Positives = 170/300 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G A+TGSGKT AF +P ++ L  +    R   A    +++PTRELA+QI     
Sbjct:   144 AGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVI--IITPTRELALQIFGVAR 201

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L    S  C +++GG D  Q+   L K  +++VATPGRL+DHL NT+ F    LK LV+
Sbjct:   202 ELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVI 260

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASK 185
             DEADR+L   FE  + +I+ V+P   RQ+ LFSAT T KV+ L R  L+  P+ I    +
Sbjct:   261 DEADRILEIGFEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPE 320

Query:   186 --YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
                ST D L+Q Y    +  +   L   L        +VF  +C++ +  + +L  +   
Sbjct:   321 KDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLP 380

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q KR     +F   +  IL+CTDVA+RGLDIP+VD ++ +D P + +DYIH
Sbjct:   381 VLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIH 440


>UNIPROTKB|Q4K8U0 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
            GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
            ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
            Uniprot:Q4K8U0
        Length = 557

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 120/333 (36%), Positives = 180/333 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG D+IG AQTG+GKT AFALPIL  +    +  +  P   A +L+PTRELA+Q++  FE
Sbjct:    42 AGHDMIGQAQTGTGKTAAFALPILHRI----DPSKREPQ--ALILAPTRELALQVATAFE 95

Query:    68 ALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
                  +  +    + GG  M  Q  A+     IVVATPGRL DHL   +   L T+ +LV
Sbjct:    96 TYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKV-LATVNHLV 154

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD +L   F   L+ I   +P  RQT LFSAT+ + ++ +    LK+P  ++  SK 
Sbjct:   155 LDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKT 214

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              TV  ++Q +  V A  K   ++ +L      + ++F RT  AT  LA  L   G +A  
Sbjct:   215 QTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAA 274

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             ++G ++Q++R   ++  K G  +I++ TDVA+RGLD+P +  V N D+P + + Y+H   
Sbjct:   275 LNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIG 334

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                        + LV   E      IE++ G+K
Sbjct:   335 RTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367


>UNIPROTKB|Q5AK59 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase HAS1"
            species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
            subunit biogenesis" evidence=IGI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
            EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
            STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
            KEGG:cal:CaO19.3962 Uniprot:Q5AK59
        Length = 565

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 115/300 (38%), Positives = 170/300 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G A+TGSGKT AF +P ++ L  +    R   A    +++PTRELA+QI     
Sbjct:   144 AGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVI--IITPTRELALQIFGVAR 201

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L    S  C +++GG D  Q+   L K  +++VATPGRL+DHL NT+ F    LK LV+
Sbjct:   202 ELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVI 260

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASK 185
             DEADR+L   FE  + +I+ V+P   RQ+ LFSAT T KV+ L R  L+  P+ I    +
Sbjct:   261 DEADRILEIGFEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPE 320

Query:   186 --YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
                ST D L+Q Y    +  +   L   L        +VF  +C++ +  + +L  +   
Sbjct:   321 KDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLP 380

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q KR     +F   +  IL+CTDVA+RGLDIP+VD ++ +D P + +DYIH
Sbjct:   381 VLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIH 440


>ASPGD|ASPL0000044206 [details] [associations]
            symbol:AN1949 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
            "preribosome, large subunit precursor" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
            GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
            ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
            EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
            OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
        Length = 609

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 115/300 (38%), Positives = 171/300 (57%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G A+TGSGKT AF +P ++ L  +    R        V+SPTRELA+QI     
Sbjct:   164 AGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVI--VVSPTRELALQIFGVAR 221

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L +  S    +++GG +   +   L K  ++++ATPGRL+DHL NT GF    LK LV+
Sbjct:   222 ELLTAHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVI 281

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLK-NP--VKIEAA 183
             DEADR+L   FE  + +I+ ++P   RQT LFSAT T KV+ L R  L+  P  + ++  
Sbjct:   282 DEADRILEVGFEDEMRQIIKILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHR 341

Query:   184 SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
              ++STV+ L+Q Y    A  +   L   L        +VF  +C+  +  A +L  +   
Sbjct:   342 KEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLP 401

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q KR     +F   +  +LICTDVA+RGLDIP+VD +I +D P +++DYIH
Sbjct:   402 VLDLHGKQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIH 461


>POMBASE|SPAC1F7.02c [details] [associations]
            symbol:has1 "ATP-dependent RNA helicase Has1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
            ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
            GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
        Length = 578

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 115/300 (38%), Positives = 171/300 (57%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G A+TGSGKT AF +P ++ L  +    R        ++SPTRELA+QI    +
Sbjct:   125 AGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI--IISPTRELALQIFGVAK 182

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L         +++GG +   +   L K  +++VATPGRL+DHL NTKGF    L+ LV+
Sbjct:   183 ELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVI 242

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLK-NP--VKIEAA 183
             DEADR+L   FE  + +I+ ++P   RQT LFSAT T KV+ L R  LK  P  V +++ 
Sbjct:   243 DEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSG 302

Query:   184 SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
                STV+ L+Q Y  V +  +   L   L        +VF  +C + + +A +L  +   
Sbjct:   303 KPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLP 362

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q +R     +F   E  IL+CT+VA+RGLDIP+VD ++ YD P + +DYIH
Sbjct:   363 VLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422


>UNIPROTKB|E2RFA3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
            CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
            Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
            Uniprot:E2RFA3
        Length = 669

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   215 GRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 272

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L         +++GG +   +   LG   +I+VATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   273 LMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 332

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   333 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 392

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   393 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 452

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   453 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 510


>RGD|1549712 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
            RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
            Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
            UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
            Genevestigator:Q5XHY0 Uniprot:Q5XHY0
        Length = 674

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 115/298 (38%), Positives = 173/298 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P+++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   220 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 277

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   278 LMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 337

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++   +
Sbjct:   338 EADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKE 397

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   398 VATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVL 457

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   458 AIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 515


>UNIPROTKB|D4A824 [details] [associations]
            symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
            norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
            ArrayExpress:D4A824 Uniprot:D4A824
        Length = 662

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 115/298 (38%), Positives = 173/298 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P+++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   208 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 265

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   266 LMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 325

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++   +
Sbjct:   326 EADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKE 385

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   386 VATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVL 445

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   446 AIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 503


>SGD|S000004903 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
            activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
            GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
            GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
            PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
            DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
            PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
            KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
            GermOnline:YMR290C Uniprot:Q03532
        Length = 505

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 116/300 (38%), Positives = 169/300 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G A+TGSGKT AF +P ++ L  +    R        V++PTRELA+QI     
Sbjct:    78 AGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGII--VITPTRELALQIFGVAR 135

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L    S    +++GG +  Q+   L K  ++++ATPGRL+DHL NTKGF    LK L++
Sbjct:   136 ELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALII 195

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASK 185
             DEADR+L   FE  + +I+ ++P   RQ+ LFSAT T KV+ L R  L+  P+ I    +
Sbjct:   196 DEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPE 255

Query:   186 Y--STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
                ST D L+Q Y    +  +   L   L        +VF  +C++ +  A +L  +   
Sbjct:   256 TDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLP 315

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q KR     +F   E  ILICTDVA+RGLDIP+VD +I +D P + +DYIH
Sbjct:   316 VLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIH 375


>MGI|MGI:1914192 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
            EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
            ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
            PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
            Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
            InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
            Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
        Length = 660

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 114/298 (38%), Positives = 173/298 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P+++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   206 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 263

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +I+VATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   264 LMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 323

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++   +
Sbjct:   324 EADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKE 383

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   384 VATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVL 443

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   444 AIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 501


>UNIPROTKB|F1MSX0 [details] [associations]
            symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
            IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
        Length = 674

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   220 GRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 277

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   278 LMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 337

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   338 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 397

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   398 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 457

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   458 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 515


>UNIPROTKB|F1N533 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
            Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
        Length = 670

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   216 GRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVL--ILSPTRELAMQTFGVLKE 273

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   274 LMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 333

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   334 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 393

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   394 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 453

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   454 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 511


>UNIPROTKB|F1RY13 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
        Length = 671

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   217 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKE 274

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   275 LMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 334

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   335 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 394

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   395 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 454

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   455 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 512


>UNIPROTKB|I3L7B7 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
        Length = 696

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   242 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKE 299

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   300 LMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 359

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   360 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 419

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   420 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 479

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   480 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 537


>UNIPROTKB|I3L840 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025310 Uniprot:I3L840
        Length = 667

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 115/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   213 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKE 270

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +IVVATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   271 LMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVID 330

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   331 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 390

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   391 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVL 450

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   451 AIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 508


>UNIPROTKB|Q11039 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A homolog"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
            RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
            PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
            EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
            GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
            PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
            ProtClustDB:CLSK791051 Uniprot:Q11039
        Length = 563

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 121/328 (36%), Positives = 177/328 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG D++GLAQTG+GKT AFA+P+L  + +I      VP   A VL PTRELA+Q++E F 
Sbjct:    49 AGSDVVGLAQTGTGKTAAFAIPMLSKI-DITSK---VPQ--ALVLVPTRELALQVAEAFG 102

Query:    68 ALGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
               G+ +S L    + GG     Q   L +   +VV TPGR++DHL       L  + +LV
Sbjct:   103 RYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERAT-LDLSRVDFLV 161

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD +L   F   ++ IL+  P  +Q  LFSATM   ++KL    L +P ++   +K 
Sbjct:   162 LDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKT 221

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             +  + + Q Y  V A+  D  L  +L      + +VF RT  AT  +A  LR  G  A  
Sbjct:   222 AVAENISQSYIQV-ARKMDA-LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAA 279

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             ISG + Q++R   +   + G+ +IL+ TDVA+RGLD+  +  V+NYDIP +++ Y+H   
Sbjct:   280 ISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIG 339

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEK 334
                        +  V+  EL     IEK
Sbjct:   340 RTGRAGRSGAALIFVSPRELHLLKAIEK 367


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 120/327 (36%), Positives = 174/327 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G+AQTGSGKT AF+LP+LQ L    + +   P     VL+PTRELA+Q++E    
Sbjct:    43 GRDVLGMAQTGSGKTAAFSLPLLQNL----DPELKAPQIL--VLAPTRELAVQVAEAMTD 96

Query:    69 LGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
                 +  +    L GG     Q  AL + P IVV TPGRL+DHL       L  L  LVL
Sbjct:    97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVL 155

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +L   F + ++ I+  IP   QT LFSATM + ++++ R  +K P ++   S  +
Sbjct:   156 DEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT 215

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T   + Q Y  V    K+  LV  L      + ++F RT +AT  +A  L   G  +  +
Sbjct:   216 TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAAL 275

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
             +G M+Q+ R   L + K G  +ILI TDVA+RGLD+  + +V+NYDIP +S+ Y+H    
Sbjct:   276 NGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGR 335

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEK 334
                       +  V   E      IE+
Sbjct:   336 TGRAGRAGRALLFVENRERRLLRNIER 362


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 120/329 (36%), Positives = 174/329 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFFACVLSPTRELAIQISEQFE 67
             G D+IGLAQTG+GKT A+ALP++Q +L     + RT+      VL+PTRELA QI+E F 
Sbjct:    38 GHDVIGLAQTGTGKTAAYALPVIQKMLSTPRGRVRTL------VLAPTRELACQIAESFR 91

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             +LG    +R   + GGV+M QQ   L     +VVA PGRL+DH+       +  ++ L++
Sbjct:    92 SLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGT-IDICGVETLII 150

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+ +  F+  +  IL  + +  QT LFSATM  +V+KL      NPV I+  ++  
Sbjct:   151 DEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTLETQTNPVTIQIGTQAP 210

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
                     Y  V    K   L+ IL      S ++F RT      LA  +   G     +
Sbjct:   211 ASSVSHSVYP-VKNHQKTPLLIEILKTTETKSVLIFARTKYGAENLADEISRAGFTTASL 269

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G++SQ++R   +  F+ G   IL+ TD+A+RGLDI  +  VINYD+P   +DY H    
Sbjct:   270 QGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGR 329

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                       +SLV   + +    I+KLI
Sbjct:   330 TGRFDRTGQALSLVTGRDGDMVRDIQKLI 358


>UNIPROTKB|Q9NVP1 [details] [associations]
            symbol:DDX18 "ATP-dependent RNA helicase DDX18"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
            EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
            RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
            ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
            MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
            SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
            Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
            CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
            MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
            InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
            ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
            GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
            CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
            Uniprot:Q9NVP1
        Length = 670

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 114/298 (38%), Positives = 171/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DL+  A+TGSGKT AF +P ++ ++++    R        +LSPTRELA+Q     + 
Sbjct:   216 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKE 273

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   LG   +I+VATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   274 LMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 333

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L+  FE+ L +I+ ++P  RQT LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   334 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 393

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   394 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVL 453

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +   L+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   454 AIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 511


>UNIPROTKB|Q81JK1 [details] [associations]
            symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 118/329 (35%), Positives = 178/329 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             KDL+  +QTGSGKT +F +P+ + ++E  EN+   P   A VL+PTRELA+Q+ E    +
Sbjct:    42 KDLVVKSQTGSGKTASFGIPLCE-MVEWEENK---PQ--ALVLTPTRELAVQVKEDITNI 95

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLD 128
             G    ++ A + G     +Q L L ++ HIVV TPGR++DH+   KG  SL  LKYLV+D
Sbjct:    96 GRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVID 153

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F   ++ I++ +P  R T LFSAT+ + V++L R  +  P  IE  +   T
Sbjct:   154 EADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGIT 213

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
              D ++     V  + K   L  + T  +  S ++F RT +    +   L  +      I 
Sbjct:   214 TDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIH 273

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G M Q  R G ++ F+ G+   L+ TDVA+RG+DI ++  VINYDIP   + Y+H     
Sbjct:   274 GGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRT 333

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                      I+ +  YE  +  +IE  IG
Sbjct:   334 GRAGNSGKAITFITPYEDRFLEEIEAYIG 362


>TIGR_CMR|BA_5703 [details] [associations]
            symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 118/329 (35%), Positives = 178/329 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             KDL+  +QTGSGKT +F +P+ + ++E  EN+   P   A VL+PTRELA+Q+ E    +
Sbjct:    42 KDLVVKSQTGSGKTASFGIPLCE-MVEWEENK---PQ--ALVLTPTRELAVQVKEDITNI 95

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLD 128
             G    ++ A + G     +Q L L ++ HIVV TPGR++DH+   KG  SL  LKYLV+D
Sbjct:    96 GRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVID 153

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +LN  F   ++ I++ +P  R T LFSAT+ + V++L R  +  P  IE  +   T
Sbjct:   154 EADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGIT 213

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
              D ++     V  + K   L  + T  +  S ++F RT +    +   L  +      I 
Sbjct:   214 TDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIH 273

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G M Q  R G ++ F+ G+   L+ TDVA+RG+DI ++  VINYDIP   + Y+H     
Sbjct:   274 GGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRT 333

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                      I+ +  YE  +  +IE  IG
Sbjct:   334 GRAGNSGKAITFITPYEDRFLEEIEAYIG 362


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 123/329 (37%), Positives = 180/329 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AGKD++G AQTG+GKT AF LP   AL +I  + +  P     VL+PTRELA+Q++E  E
Sbjct:    51 AGKDVLGEAQTGTGKTAAFGLP---ALAKIDTSIKK-PQLM--VLAPTRELAMQVAEAIE 104

Query:    68 ALGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
             + G  +  LR A L GG     Q   L +   +VV TPGRLMDHL   K   L  L+  V
Sbjct:   105 SFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRR-KSLKLDELRVCV 163

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD +LN  F + +  IL+ IP+  Q  LFSATM   ++K+    LK+P  I+ A+  
Sbjct:   164 LDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVK 223

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
                  + Q    V    K   L  I   V   + ++F RT + T  +A  L   G  A+ 
Sbjct:   224 KAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALA 283

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             ++G ++Q++R   +++ K+G+ +IL+ TDV +RGLDIP + +VINYD+P +++ Y+H   
Sbjct:   284 LNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIG 343

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKL 335
                        I+ V   E+      E+L
Sbjct:   344 RTGRAGREGMSIAFVRPREMYSIRHYERL 372


>UNIPROTKB|F5H1N9 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC007215 HGNC:HGNC:18682 ChiTaRS:DDX47 IPI:IPI00792278
            ProteinModelPortal:F5H1N9 SMR:F5H1N9 PRIDE:F5H1N9
            Ensembl:ENST00000544400 ArrayExpress:F5H1N9 Bgee:F5H1N9
            Uniprot:F5H1N9
        Length = 196

 Score = 465 (168.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 91/140 (65%), Positives = 116/140 (82%)

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
             Q EA+   ++L+ AV+VGG+D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LKY
Sbjct:    51 QIEAIP--LALQ-AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 107

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LV+DEADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +S
Sbjct:   108 LVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 167

Query:   185 KYSTVDTLKQQYRFVPAKYK 204
             KY TV+ L+Q Y F+P+K+K
Sbjct:   168 KYQTVEKLQQYYIFIPSKFK 187

 Score = 41 (19.5 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query:   253 QSKRLGALNK 262
             +SKRLG+LNK
Sbjct:   187 KSKRLGSLNK 196


>UNIPROTKB|F1NEQ3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
            IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
        Length = 659

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 113/300 (37%), Positives = 172/300 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+TGSGKT AF +P ++ + ++    R        +LSPTRELA+Q     + 
Sbjct:   203 GRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGTGVI--ILSPTRELAMQTYGVLKE 260

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   LG   +I+VATPGRL+DH+ NT GF    L+ LV+D
Sbjct:   261 LMNHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 320

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L   FE+ + +I+ ++P+ RQT LFSAT T+KV+ L +  LK  P  V ++   +
Sbjct:   321 EADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKE 380

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TVD L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   381 TATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVL 440

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN--SKDYIH 303
              I G   Q+KR     +F   E  IL+CTDVA+RGLDIP VD ++ YD P +   K+YIH
Sbjct:   441 AIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIH 500


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 116/331 (35%), Positives = 176/331 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G +L+G A TG+GKT A+ LP+LQ +      QR   A    +++PTRELA+Q++++   
Sbjct:    39 GHNLVGQAPTGTGKTAAYLLPVLQRI------QRGKKAQ-VLIVTPTRELALQVADEVAK 91

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + +R   + GG  + +Q   L +   ++V TPGR++DH+   K F    +K ++LD
Sbjct:    92 LGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILD 150

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +L+  F   ++ ILN +   +QT LFSAT+   +K + +  L     ++   +  T
Sbjct:   151 EADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKT 210

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V  ++Q Y  +P   K   LV IL        +VF RT      +   L   G  A  + 
Sbjct:   211 VPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLH 270

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ +R   +  FKAG+  +L+ TDVA+RGLDIP V  VIN+DIP N + YIH     
Sbjct:   271 GDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRT 330

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+L+N  E +    IE+ I K+
Sbjct:   331 GRAGREGKAITLINYRERKLLKAIEEAINKR 361


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 116/331 (35%), Positives = 176/331 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G +L+G A TG+GKT A+ LP+LQ +      QR   A    +++PTRELA+Q++++   
Sbjct:    39 GHNLVGQAPTGTGKTAAYLLPVLQRI------QRGKKAQ-VLIVTPTRELALQVADEVAK 91

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG  + +R   + GG  + +Q   L +   ++V TPGR++DH+   K F    +K ++LD
Sbjct:    92 LGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILD 150

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +L+  F   ++ ILN +   +QT LFSAT+   +K + +  L     ++   +  T
Sbjct:   151 EADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKT 210

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             V  ++Q Y  +P   K   LV IL        +VF RT      +   L   G  A  + 
Sbjct:   211 VPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLH 270

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G MSQ +R   +  FKAG+  +L+ TDVA+RGLDIP V  VIN+DIP N + YIH     
Sbjct:   271 GDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRT 330

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      I+L+N  E +    IE+ I K+
Sbjct:   331 GRAGREGKAITLINYRERKLLKAIEEAINKR 361


>POMBASE|SPAC31A2.07c [details] [associations]
            symbol:dbp10 "ATP-dependent RNA helicase Dbp10
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
            EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
            ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
            GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
            Uniprot:Q09719
        Length = 848

 Score = 342 (125.4 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 80/209 (38%), Positives = 120/209 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G+A+TGSGKT AF +P+++ L     N  T     A +LSP RELA+Q  +  + 
Sbjct:   106 GRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTR----ALILSPNRELALQTVKVVKD 161

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                G  LR   +VGGV + +Q   L  +P IVVATPGR + HL       L +++Y+V D
Sbjct:   162 FSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFD 220

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKY 186
             EADRL    F   L EIL+ +P  RQT LFSAT+ + +    +A L++PV  +++  SK 
Sbjct:   221 EADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKV 280

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV 215
             S    L+  +  V    ++  L+ IL ++
Sbjct:   281 SA--DLQSAFFSVKTAEREAALLCILQDI 307

 Score = 182 (69.1 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 40/123 (32%), Positives = 60/123 (48%)

Query:   216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 275
             S  ST+VF  T      ++ +L   G     I G + Q  RL  +N F+ G+ N+L+ TD
Sbjct:   345 SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404

Query:   276 VASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKL 335
             VASRG+DIP +  VINYD P   K ++H               SLV   +  + L ++  
Sbjct:   405 VASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLF 464

Query:   336 IGK 338
             + +
Sbjct:   465 LNR 467


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 358 (131.1 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
 Identities = 84/207 (40%), Positives = 119/207 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D++G+A+TGSGKTGAF +P++Q L    ++  TV    A +LSPTRELAIQ  +  + 
Sbjct:   267 GHDIVGMARTGSGKTGAFVIPMIQKL---GDHSTTV-GVRAVILSPTRELAIQTFKVVKD 322

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                G  LR  ++VGG  M  Q   L + P I++ATPGRLM HL  T G SL  ++Y+V D
Sbjct:   323 FSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFD 381

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRL    F + L EIL+ +   RQT LFSAT+   +    RA L NP  I   +    
Sbjct:   382 EADRLFEMGFNEQLTEILSKLSENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTKI 441

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEV 215
              + L   +  +  + K   L+++L ++
Sbjct:   442 SENLSLSFFTLRHEEKLGVLLFLLKDI 468

 Score = 169 (64.5 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query:   218 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 277
             SST++F  T      + ++L   G  +  I G++    R   L KF++ +  +++ TD+A
Sbjct:   498 SSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLA 557

Query:   278 SRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
             +RG+DIP +D VIN+D P   K +IH               SLV+  E+ + + +   +G
Sbjct:   558 ARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLG 617

Query:   338 KK 339
             +K
Sbjct:   618 RK 619


>WB|WBGene00021277 [details] [associations]
            symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
            HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
            ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
            EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
            UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
            NextBio:872791 Uniprot:Q9N478
        Length = 732

 Score = 489 (177.2 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 115/299 (38%), Positives = 160/299 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D++G A+TGSGKT A  +P+L+AL     +        A ++SPTRELA+Q      A
Sbjct:   113 GSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDY--GLGALIISPTRELALQTFSTINA 170

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G+     C +++GG D+  +   +    +I+V TPGRL+ H+      S  +L+ LVLD
Sbjct:   171 VGAHHGFSCGLVIGGSDVAFERNRISGI-NIIVCTPGRLLQHMDENAQMSCDSLQVLVLD 229

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS- 187
             EADR+L+  F K L+ I+N +P  RQT LFSAT T+ VK L R C  +PV +      S 
Sbjct:   230 EADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASA 289

Query:   188 -TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
              T D LKQ Y  V  ++K   L   +       ++VF  +C   R L      L  G   
Sbjct:   290 ATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPV 349

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G M+Q KR+    KF   +  +LI TDVASRGLD   +D VI  D P    DYIH
Sbjct:   350 MGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIH 408


>WB|WBGene00015232 [details] [associations]
            symbol:B0511.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
            PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
            DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
            EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
            KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
            InParanoid:O61815 NextBio:877669 Uniprot:O61815
        Length = 544

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 113/299 (37%), Positives = 171/299 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  A+TGSGKT AF LP ++ L ++   Q         ++SPTREL++Q       
Sbjct:   105 GKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVI--IVSPTRELSMQTYGVLSE 162

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L  G +L   +++GG +   +   L K   I+VATPGRL+DHL NT  F +  +K L++D
Sbjct:   163 LLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIID 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACL-KNPVKIEAASKY- 186
             EADR+L+  FE  + ++L  +P+ RQ+ LFSAT + KV +L +  L  NPV++    K  
Sbjct:   223 EADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAE 282

Query:   187 -STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TV+ L+Q Y   P+  +   L   L +      MVF  +C++ +    +L  +    +
Sbjct:   283 EATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCM 342

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS-KDYIH 303
              I G   Q KR     +F   E  IL+CTDVA+RGLDIP+VD ++ YD PT+  ++YIH
Sbjct:   343 SIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYD-PTDEPREYIH 400


>ASPGD|ASPL0000054300 [details] [associations]
            symbol:AN0583 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
            STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
            KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
            OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
        Length = 936

 Score = 348 (127.6 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
 Identities = 83/208 (39%), Positives = 124/208 (59%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D++G+A+TGSGKT AF +P+++ L    ++  T       +LSP+RELA+Q  +  + L
Sbjct:   129 QDVVGMARTGSGKTAAFVIPMIEKL----KSHSTKFGARGLILSPSRELALQTLKVVKEL 184

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G G  L+  +LVGG  + +Q   +   P IV+ATPGR + HL       L ++KY+V DE
Sbjct:   185 GKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFL-HLKVEMNLDLSSIKYVVFDE 243

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYS 187
             ADRL    F   L EIL+ +P  RQT LFSAT+ K + +  RA L++P  V+++  SK S
Sbjct:   244 ADRLFEMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKIS 303

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEV 215
                 L+  +  V +  K+  L+YIL EV
Sbjct:   304 P--DLQNAFFSVKSAEKEGALLYILNEV 329

 Score = 175 (66.7 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
 Identities = 40/121 (33%), Positives = 60/121 (49%)

Query:   219 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 278
             ST+VF  T      L  +LR  G     + G + Q+ R   +  F+ G  NIL+ TDVA+
Sbjct:   375 STIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAA 434

Query:   279 RGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
             RG+DIP +  VINYD P+  K ++H               SLV   +  + L ++  +G+
Sbjct:   435 RGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGR 494

Query:   339 K 339
             K
Sbjct:   495 K 495


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 120/305 (39%), Positives = 171/305 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D+IG+A+TGSGKT AF LP L+ +L++   Q++     A V+SPTRELA+QI +Q  
Sbjct:   109 AGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPL-AVVISPTRELAMQIYDQLV 167

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
                  + ++ A + GGV   +Q  AL K   +VVATPGRL D L N     LG +KYLVL
Sbjct:   168 KFAEKVDIQVACIFGGVKKDEQREAL-KSAAVVVATPGRLKD-LQNDGSLDLGRVKYLVL 225

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             DEADR+L+  FE+ + +I++ +P   RQT +F+AT    V+ L    + +PV +      
Sbjct:   226 DEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDP 285

Query:   187 STV----DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTC----DATRLLALMLR 238
             S        +KQ    V    K+  LV IL      +       C    +A R+  L LR
Sbjct:   286 SADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERL-LR 344

Query:   239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
               G +   I G +SQ +R  +L  FK+G   +L+ TDVA+RGLDIP V +V+N   P   
Sbjct:   345 TKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTV 404

Query:   299 KDYIH 303
             +DY+H
Sbjct:   405 EDYVH 409


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 112/332 (33%), Positives = 177/332 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF--ACVLSPTRELAIQISEQF 66
             G DL+G+AQTG+GKT AF+LPI+    +   N+  + A    + +L+PTRELA QI +  
Sbjct:    39 GNDLLGIAQTGTGKTAAFSLPIIN---KFGRNKIDIKAKSTRSLILTPTRELASQIMQNI 95

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
             +    G+ L+  V+ GGV    Q  ++     I+VATPGRL+D L  T   +   L+  V
Sbjct:    96 DDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLD-LIETGDINFKALEVFV 154

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD +L+  F K +  I++ +P+ RQT LFSATM  +++ L  A L +P KI+  ++ 
Sbjct:   155 LDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAET 214

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              T+D + Q    +    K   L  ILT+      ++F +T     ++   L      A  
Sbjct:   215 VTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKYGADIIVKALEKASITAAS 274

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             +    +Q+ R  AL  FK     +L+ TDVA+RG+D+ ++ +VINY++P + ++YIH   
Sbjct:   275 LHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIG 334

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                        IS   + ++     IE  IG+
Sbjct:   335 RTARAGKSGMAISFAVENDIRQLTNIENSIGQ 366


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 113/329 (34%), Positives = 174/329 (52%)

Query:    11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70
             DL+  AQTG+GKT AF LP LQ L    +     P     VL+PTRELA Q+++     G
Sbjct:    40 DLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVL--VLTPTRELAQQVTDAVRTYG 97

Query:    71 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 130
             + + +R   ++GG+    Q   L      +VATPGRL+D L + +   L  L+ LVLDEA
Sbjct:    98 AFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVD-LLDRRSLDLSRLELLVLDEA 156

Query:   131 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVD 190
             DR+L+  F   +D I    P  RQT LF+ATM   + +L    L+ P +I+ A   +T +
Sbjct:   157 DRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHE 216

Query:   191 TLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249
              ++Q+        +K+  L +++T+ S    ++F+ T      LAL L+  G  A  + G
Sbjct:   217 HIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHG 276

Query:   250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXX 309
              M Q+ R   +   K G   +L+ TDVA+RGLD+  +  VIN+D+P  ++DY+H      
Sbjct:   277 DMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTG 336

Query:   310 XXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                     IS  +  E+ +  +IE+ IG+
Sbjct:   337 RAGASGIAISFASLNEVNYLARIERYIGQ 365


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 114/339 (33%), Positives = 184/339 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G+AQTG+GKT +F LP++  LL     +  +P   + VL PTRELA Q++E F+ 
Sbjct:    39 GRDVLGIAQTGTGKTASFTLPMI-TLLARGRARARMPR--SLVLCPTRELAAQVAENFDT 95

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                 + L  A+L+GGV   +Q   + +   +++ATPGRL+DH    K    G ++ +V+D
Sbjct:    96 YTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTG-VQIMVVD 154

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F   ++ I ++ P  RQT  FSATM  +++++    L  P +IE A + + 
Sbjct:   155 EADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATA 214

Query:   189 VDTLKQ-------QYRFVPAKYKDCYLVYILTEVSASST--MVFTRTCDATRLLALMLRN 239
              +T++Q         R   A  K   L  ++       T  ++F        ++A  L+ 
Sbjct:   215 SETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQK 274

Query:   240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299
              G  A PI G + QS+R   L+ F+ G+  +L+ +DVA+RGLD+PSV  V N+D+P + +
Sbjct:   275 YGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPE 334

Query:   300 DYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
             DY+H              I+L    + +    IEKLI K
Sbjct:   335 DYVHRIGRTGRAGRDGKAITLCIPRDEKALDAIEKLIQK 373


>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
            symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
            cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
            HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
            RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
            STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
            InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
            Uniprot:Q6DRL1
        Length = 653

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 111/298 (37%), Positives = 170/298 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+TGSGKT AF +P ++ + ++    R        VLSPTRELA+Q     + 
Sbjct:   198 GRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVI--VLSPTRELAMQTYGVLKE 255

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L +       +++GG +   +   L    +I+VATPGRL+DHL NT GF    L+ L++D
Sbjct:   256 LMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIID 315

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASK 185
             EADR+L   FE+ L +I+ ++P+ RQ+ LFSAT T+KV+ L R  LK  P  V ++    
Sbjct:   316 EADRILEVGFEEELKQIIKLLPKKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKD 375

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +TV+ L+Q Y   P++ +   L   L +      MVF  +C + +    +L  +    +
Sbjct:   376 TATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVM 435

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              I G   Q+KR     +F   +  IL+CTDVA+RGLDIP VD ++ +D P + K+YIH
Sbjct:   436 AIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIH 493


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 115/334 (34%), Positives = 179/334 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AGKDL+  ++TGSGKT AF LP LQ ++      +  P     +L PTRELA Q+  Q  
Sbjct:    37 AGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRVL--ILLPTRELAHQVYSQLR 94

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L +    +   ++GG +   Q  AL K PH +VATPGR+ DHL   K   L  L+ L+L
Sbjct:    95 LLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLEQ-KNLFLNGLELLIL 153

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMT-KKVKKLQRACLKNPVKIEAASK 185
             DEADR+L+  F   L  I      + RQT +FSAT+   ++ ++  A LKNP+ +   + 
Sbjct:   154 DEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTA 213

Query:   186 YSTVDTLKQQ-YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
             ++    + Q+ Y      +K+  L  +L++ S    ++FT T   T  LA  L   G   
Sbjct:   214 HAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFAT 273

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               +SG + Q+ R   +++F  G+  IL+ TDVASRGLD+ +V +VIN+D+P  +++Y+H 
Sbjct:   274 AALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHR 333

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                          ISLV   + + + +++  + K
Sbjct:   334 IGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRK 367


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 115/334 (34%), Positives = 179/334 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AGKDL+  ++TGSGKT AF LP LQ ++      +  P     +L PTRELA Q+  Q  
Sbjct:    37 AGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRVL--ILLPTRELAHQVYSQLR 94

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L +    +   ++GG +   Q  AL K PH +VATPGR+ DHL   K   L  L+ L+L
Sbjct:    95 LLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLEQ-KNLFLNGLELLIL 153

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMT-KKVKKLQRACLKNPVKIEAASK 185
             DEADR+L+  F   L  I      + RQT +FSAT+   ++ ++  A LKNP+ +   + 
Sbjct:   154 DEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTA 213

Query:   186 YSTVDTLKQQ-YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
             ++    + Q+ Y      +K+  L  +L++ S    ++FT T   T  LA  L   G   
Sbjct:   214 HAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFAT 273

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               +SG + Q+ R   +++F  G+  IL+ TDVASRGLD+ +V +VIN+D+P  +++Y+H 
Sbjct:   274 AALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHR 333

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                          ISLV   + + + +++  + K
Sbjct:   334 IGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRK 367


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 119/331 (35%), Positives = 177/331 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD+IG A+TG+GKT AF LPIL+   +I      V A    +++PTRELA+QI+ + +
Sbjct:    41 SGKDIIGQAKTGTGKTLAFVLPILE---KIDPESSDVQAL---IVAPTRELALQITTEIK 94

Query:    68 A-LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
               L     +    + GG D+ QQ   L    HIVVATPGRL+DH+   +   L  L  +V
Sbjct:    95 KMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRR-ETIDLSNLSTIV 153

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD++L   F   +++IL+  P  +QT LFSAT+ K +KKL +  +  P  I+  S+ 
Sbjct:   154 LDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEE 213

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              TVDT++Q+      + K   L +++        ++F RT      L   L+ LG     
Sbjct:   214 VTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAE 273

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             + G + Q+KR   +  F+  +   LI TDVA+RGLD+  V  V NYDIP + + YIH   
Sbjct:   274 LHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIG 333

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                        I+ V   + +   +IEK +G
Sbjct:   334 RTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 119/331 (35%), Positives = 177/331 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD+IG A+TG+GKT AF LPIL+   +I      V A    +++PTRELA+QI+ + +
Sbjct:    41 SGKDIIGQAKTGTGKTLAFVLPILE---KIDPESSDVQAL---IVAPTRELALQITTEIK 94

Query:    68 A-LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
               L     +    + GG D+ QQ   L    HIVVATPGRL+DH+   +   L  L  +V
Sbjct:    95 KMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRR-ETIDLSNLSTIV 153

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEAD++L   F   +++IL+  P  +QT LFSAT+ K +KKL +  +  P  I+  S+ 
Sbjct:   154 LDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEE 213

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              TVDT++Q+      + K   L +++        ++F RT      L   L+ LG     
Sbjct:   214 VTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAE 273

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             + G + Q+KR   +  F+  +   LI TDVA+RGLD+  V  V NYDIP + + YIH   
Sbjct:   274 LHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIG 333

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                        I+ V   + +   +IEK +G
Sbjct:   334 RTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 109/298 (36%), Positives = 165/298 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D+ G+AQTG+GKT AF LP++Q L      +  +P     +L PTRELA Q++E FE 
Sbjct:    41 GGDVTGVAQTGTGKTAAFVLPMIQRL-STGRARARMPR--CLILCPTRELAAQVAENFEK 97

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
              G  + L  A+L+GGV   +Q   L +   +++ATPGRLMD     K   +G ++ L++D
Sbjct:    98 YGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQFDRGKLLMMG-VETLIID 156

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F   +++I   +P  RQT LFSAT    +++L +   K+P KIE      T
Sbjct:   157 EADRMLDMGFIPDIEKICAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQT 216

Query:   189 VDTLKQQYRFVPA---KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
              +T+ Q    +P    K +   L  ++   +  + +VF        ++A  L   G  A 
Sbjct:   217 AETISQFVVKLPTNDGKARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAA 276

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             PI G + QS R   L +F+ G+  +L+ +DVA+RGLDIP V  V N+  P   +DY+H
Sbjct:   277 PIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVH 334


>UNIPROTKB|E9PIF2 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
            EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
            ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
            UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
        Length = 835

 Score = 484 (175.4 bits), Expect = 2.0e-45, P = 2.0e-45
 Identities = 109/299 (36%), Positives = 163/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ ++  +P+ RQT LFSAT TK VK L R  LKNP  V +   +KY
Sbjct:   223 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y     + K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSI 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 121/332 (36%), Positives = 178/332 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE-IAENQRTVPAFFAC--VLSPTRELAIQISE 64
             AG+DLI  A TGSGKT  FALP+LQ L E I+   +     F    VL PTRELA Q+++
Sbjct:    44 AGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVAD 103

Query:    65 QFEALGSGIS--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122
               ++     +  ++   + GGV +  Q LAL     I+VATPGRL+D L ++    L  +
Sbjct:   104 SIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPGRLLD-LISSNAIKLDKV 162

Query:   123 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 182
             K LVLDEADR+L+  F + L  +L + P+ +QT LFSAT  ++V  L +  L NP++I+ 
Sbjct:   163 KTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQL 222

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 242
              S  +   TL Q+   V    K   L +++ +      ++F         LA  L   G 
Sbjct:   223 QS--ADASTLVQRVFTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGI 280

Query:   243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
              A    G   QS+R   L+ FKAG+  +LI TD+A+RGLDI  + +VIN+++P +  DY+
Sbjct:   281 TAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYM 340

Query:   303 HXXXXXXXXXXXXXXISLVNQYELEWYLQIEK 334
             H              ISL++  +   +  IEK
Sbjct:   341 HRIGRSGRAGEVGLAISLIDHEDYHHFSVIEK 372


>UNIPROTKB|Q13206 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
            EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
            EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
            PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
            IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
            SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
            Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
            GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
            neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
            ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
            ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
            Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
        Length = 875

 Score = 484 (175.4 bits), Expect = 2.5e-45, P = 2.5e-45
 Identities = 109/299 (36%), Positives = 163/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ ++  +P+ RQT LFSAT TK VK L R  LKNP  V +   +KY
Sbjct:   223 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y     + K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSI 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 120/309 (38%), Positives = 174/309 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D++G+A+TGSGKT AF +P LQ L  +++N ++VP     V+SPTRELAIQ  E   
Sbjct:   201 AGRDVVGIAETGSGKTVAFGIPALQYLNGLSDN-KSVPRVL--VVSPTRELAIQTYENLN 257

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             +L  G +L+  V+ GG    +Q  A  K   +++ TPGRL+D L N        + YLVL
Sbjct:   258 SLIQGTNLKAVVVYGGAPKSEQARA-AKNASVIIGTPGRLLD-LINDGSIDCSQVGYLVL 315

Query:   128 DEADRLLNDDFEKSLDEILNVIPR-----MRQTYLFSATMTKKVKKLQRACLKNPVKIEA 182
             DEADR+L+  FE+ +  I++  P       RQT  FSAT  + V+ L    LK+PVKI  
Sbjct:   316 DEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITI 375

Query:   183 AS-KYSTVDTLKQQYRFVP-AKYKDCYLVYILTEVSASS-----TMVFTR-TCDATRLLA 234
              S + +    + Q    +   + K+  L  +L +  +S       ++F     +A R+  
Sbjct:   376 GSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEG 435

Query:   235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 294
              + R      + I G MSQ  RL ALN FK+G+C +L+ TDVA+RGLDIP V +VIN   
Sbjct:   436 TLARKYN--VVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTF 493

Query:   295 PTNSKDYIH 303
             P   +DY+H
Sbjct:   494 PLTIEDYVH 502


>UNIPROTKB|Q08DT0 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
            EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
            EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
            EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
            EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
            RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
            Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
            InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
        Length = 876

 Score = 482 (174.7 bits), Expect = 4.1e-45, P = 4.1e-45
 Identities = 110/299 (36%), Positives = 163/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSADGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LKNP  V +   +KY
Sbjct:   223 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y     + K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSL 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>DICTYBASE|DDB_G0284017 [details] [associations]
            symbol:ddx10 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
            STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
            GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
        Length = 878

 Score = 481 (174.4 bits), Expect = 5.3e-45, P = 5.3e-45
 Identities = 117/300 (39%), Positives = 165/300 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A+TGSGKT +F LPIL+ L      +       A VLSPTRELAIQI +  +A
Sbjct:   178 GRDILGAAKTGSGKTLSFILPILETLWRNRWGRDD--GIGAIVLSPTRELAIQIFDVLKA 235

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G   +    +++GG ++ Q+   +    +I++ATPGRL+ H+  T GF    LK LVLD
Sbjct:   236 VGKYHTFSAGLIIGGRNVQQEKDKINAM-NILIATPGRLLQHMDETYGFDCSNLKILVLD 294

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK--Y 186
             EADR+L+  F K L+ I+  +PR RQT LFSAT TK ++ L R  L+ P  I    K   
Sbjct:   295 EADRILDLGFSKCLNSIVENLPRERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDIT 354

Query:   187 STVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLL--ALMLRNLGQR 243
             +T   L Q    +P + K +    +I T ++ S  +VF  +C   R       L N G  
Sbjct:   355 TTPQNLTQTLCVIPLEMKLNMLFSFIKTHLT-SKIIVFFASCKQVRFAHETFKLLNPGTT 413

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
               P+ G M Q  RL     F   +   L  TD+A+RGLD P+V+ VI  D P + + YIH
Sbjct:   414 LFPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIH 473


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 112/329 (34%), Positives = 176/329 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++  A TGSGKT AFALP+LQ L E     ++       VL PTRELA Q+++ F 
Sbjct:    45 SGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFL 104

Query:    68 ALGSGIS--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
             +  S  +  L+     GGV +  Q  +L     ++VATPGRL+D L +     L  +   
Sbjct:   105 SYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAF 163

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             VLDEADR+L+  F + L+++L  +PR +QT LFSAT  ++V+ L    L  P++    S+
Sbjct:   164 VLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSE 223

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
               +  T++Q+   V  + K   L +++ +   S  ++F    +    LA  L   G  A 
Sbjct:   224 QES--TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAE 281

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
                G  +Q  R   L+ FK GE ++LI TD+A+RG+DI  + +VIN+D+P +  DY+H  
Sbjct:   282 VFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRI 341

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         ++L++  E   +  IEK
Sbjct:   342 GRSGRAGEAGLAVTLISHEEYHHFGVIEK 370


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 112/329 (34%), Positives = 176/329 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++  A TGSGKT AFALP+LQ L E     ++       VL PTRELA Q+++ F 
Sbjct:    45 SGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFL 104

Query:    68 ALGSGIS--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
             +  S  +  L+     GGV +  Q  +L     ++VATPGRL+D L +     L  +   
Sbjct:   105 SYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAF 163

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             VLDEADR+L+  F + L+++L  +PR +QT LFSAT  ++V+ L    L  P++    S+
Sbjct:   164 VLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSE 223

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
               +  T++Q+   V  + K   L +++ +   S  ++F    +    LA  L   G  A 
Sbjct:   224 QES--TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAE 281

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
                G  +Q  R   L+ FK GE ++LI TD+A+RG+DI  + +VIN+D+P +  DY+H  
Sbjct:   282 VFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRI 341

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         ++L++  E   +  IEK
Sbjct:   342 GRSGRAGEAGLAVTLISHEEYHHFGVIEK 370


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 117/310 (37%), Positives = 179/310 (57%)

Query:     4 W-FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
             W F  +GKD+IG+A+TGSGKT AF +P +  ++    N +T+     C+ SPTRELA+QI
Sbjct:   184 WPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTG-NTKTLSVL--CI-SPTRELALQI 239

Query:    63 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122
              +    L +   + C  + GGV    Q   + K  ++VVATPGRL+D L N    +LG +
Sbjct:   240 YDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVD-LINDGAINLGKV 297

Query:   123 KYLVLDEADRLLNDDFEKSLDEIL-NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 181
              YLVLDEADR+L   FE+ +  I+ N     RQT +F+AT  K+V++L    + +PVK+ 
Sbjct:   298 NYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVT 357

Query:   182 AASK--YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASST-----MVFTR-TCDATRLL 233
                +   S    + Q    +    K+  L+ +L + +A+ +     ++F     +A+R+ 
Sbjct:   358 VGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIE 417

Query:   234 ALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 293
               + RN    A  I G +SQ +R  AL+ FK+G+ N+L+ TDVA+RGLDIP+V +VIN  
Sbjct:   418 NFLKRNRFSVAA-IHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLT 476

Query:   294 IPTNSKDYIH 303
              P   +DY+H
Sbjct:   477 FPLTIEDYVH 486


>UNIPROTKB|Q9KLE2 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 118/328 (35%), Positives = 172/328 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G AQTG+GKT AF+LP+L  L  +++ +   P   A V++PTRELAIQ++ + + 
Sbjct:    63 GRDALGKAQTGTGKTAAFSLPLLNKL-NLSQYK---PQ--AIVMAPTRELAIQVAAEIKN 116

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             LG  I  L+   + GG  ++ Q  AL    HIVV TPGR+ D +T  +   L      +L
Sbjct:   117 LGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFIL 175

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +L   F   +  I+   P   Q  LFSATM   VK++    L+NP  ++ A    
Sbjct:   176 DEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ 235

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV  ++QQY  V    KD  +  +L      +++VF RT   T  LA  L   G +A  +
Sbjct:   236 TVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAAL 295

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G + QS R   ++  K G  +IL+ TDV +RGLD+P +  V NYDIP + + YIH    
Sbjct:   296 HGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGR 355

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKL 335
                       I LV   ++     IE++
Sbjct:   356 TGRAGRKGKAILLVRTNQIRMLRTIERV 383


>TIGR_CMR|VC_A0804 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 118/328 (35%), Positives = 172/328 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G AQTG+GKT AF+LP+L  L  +++ +   P   A V++PTRELAIQ++ + + 
Sbjct:    63 GRDALGKAQTGTGKTAAFSLPLLNKL-NLSQYK---PQ--AIVMAPTRELAIQVAAEIKN 116

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             LG  I  L+   + GG  ++ Q  AL    HIVV TPGR+ D +T  +   L      +L
Sbjct:   117 LGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFIL 175

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +L   F   +  I+   P   Q  LFSATM   VK++    L+NP  ++ A    
Sbjct:   176 DEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ 235

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             TV  ++QQY  V    KD  +  +L      +++VF RT   T  LA  L   G +A  +
Sbjct:   236 TVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAAL 295

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
              G + QS R   ++  K G  +IL+ TDV +RGLD+P +  V NYDIP + + YIH    
Sbjct:   296 HGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGR 355

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKL 335
                       I LV   ++     IE++
Sbjct:   356 TGRAGRKGKAILLVRTNQIRMLRTIERV 383


>ASPGD|ASPL0000061778 [details] [associations]
            symbol:AN0589 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
            ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
            EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
            HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
        Length = 812

 Score = 478 (173.3 bits), Expect = 8.1e-45, P = 8.1e-45
 Identities = 117/301 (38%), Positives = 169/301 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A+TGSGKT AF +PIL+ L     +        A ++SPTRELAIQI E    
Sbjct:    85 GRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHD--GLGALIISPTRELAIQIFEVLRK 142

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G   +    +++GG  + ++   LG R +I+V TPGR++ HL  T  F    L+ LVLD
Sbjct:   143 IGRYHTFSAGLVIGGKSLKEEQERLG-RMNILVCTPGRMLQHLDQTAFFETYNLQMLVLD 201

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+++  F+K++D I+  +P  RQT LFSAT TKKV  L R  L++P  V +  A+  
Sbjct:   202 EADRIMDMGFQKTVDAIIGHLPPERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASS 261

Query:   187 STVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
             +T   L+Q Y   P   K D    +I + +  S T+VF  +    R +    R++ Q  I
Sbjct:   262 ATPSKLQQHYVVTPLPQKLDTLWSFIRSNLK-SKTIVFMSSGKQVRFVYESFRHM-QPGI 319

Query:   246 PI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
             P+    G   Q  RL    +F   +  +L  TDVA+RGLD P+VD VI  D P ++  YI
Sbjct:   320 PLLHLHGRQKQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYI 379

Query:   303 H 303
             H
Sbjct:   380 H 380


>UNIPROTKB|E2RC35 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
            CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
            Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
            Uniprot:E2RC35
        Length = 871

 Score = 479 (173.7 bits), Expect = 8.5e-45, P = 8.5e-45
 Identities = 109/299 (36%), Positives = 163/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LKNP  + +   +KY
Sbjct:   223 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y     + K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISI 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TIGR_CMR|CPS_1590 [details] [associations]
            symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
            STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
            OMA:AISECGY ProtClustDB:CLSK768209
            BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
        Length = 455

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 118/347 (34%), Positives = 185/347 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEI---AENQRTVP-------------AFFACVL 52
             G DL+  AQTG+GKT AF+LPIL A+ +    A++  T               A  A +L
Sbjct:    38 GVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALIL 97

Query:    53 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLT 112
             +PTRELA Q+++  +     + ++  V+ GG  M  QT  L +   ++VATPGRL++HL 
Sbjct:    98 TPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLA 157

Query:   113 NTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 172
               +   L  +K+LVLDEADR+L+  F   ++++L  +    QT +FSAT + +VK L   
Sbjct:   158 -LRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQ 216

Query:   173 CLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRL 232
              LK+P  I  + + +T   +KQ   +V  + K   L  ++   +    +VF  T ++   
Sbjct:   217 LLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIGVNNWQQVLVFAGTKESANT 276

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             LA  L+  G +A    G  +Q  R  AL +F  G+  +L+ TDVA+RGLDIP +  V+N+
Sbjct:   277 LAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNF 336

Query:   293 DIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
              +P   +DY+H              ISLV+  +  +   IE+LI +K
Sbjct:   337 HLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLIERK 383


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 111/329 (33%), Positives = 174/329 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DLI  AQTG+GKT +F LPIL+ L +  + QR      A +L PTRELA+Q++E+ E 
Sbjct:    38 GRDLIAAAQTGTGKTASFVLPILEKLRQ-GQTQRK-KRVRALILVPTRELAMQVAEKVEQ 95

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
              G    L+   + GGVD   Q   L     ++VATPGRLMD L   +      ++ +VLD
Sbjct:    96 YGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLD 154

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F +S+++I++ +P   Q  LFSAT+++KV++L +  +++P +I  A+  ++
Sbjct:   155 EADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS 214

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
                + Q    V    K   L +++ E      ++F  T      L   L   G  A    
Sbjct:   215 KSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFH 274

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
                SQ+ R   L  FK+G+   L+ T VA+RG+DI  +  V+NYD+P  + +Y+H     
Sbjct:   275 SGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRT 334

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                      IS V++   +    IE  +G
Sbjct:   335 GRAEAVGEAISFVSKDNFKNLCMIESRLG 363


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 111/329 (33%), Positives = 174/329 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+DLI  AQTG+GKT +F LPIL+ L +  + QR      A +L PTRELA+Q++E+ E 
Sbjct:    38 GRDLIAAAQTGTGKTASFVLPILEKLRQ-GQTQRK-KRVRALILVPTRELAMQVAEKVEQ 95

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
              G    L+   + GGVD   Q   L     ++VATPGRLMD L   +      ++ +VLD
Sbjct:    96 YGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLD 154

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F +S+++I++ +P   Q  LFSAT+++KV++L +  +++P +I  A+  ++
Sbjct:   155 EADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS 214

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
                + Q    V    K   L +++ E      ++F  T      L   L   G  A    
Sbjct:   215 KSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFH 274

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
                SQ+ R   L  FK+G+   L+ T VA+RG+DI  +  V+NYD+P  + +Y+H     
Sbjct:   275 SGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRT 334

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                      IS V++   +    IE  +G
Sbjct:   335 GRAEAVGEAISFVSKDNFKNLCMIESRLG 363


>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 293 (108.2 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 70/190 (36%), Positives = 109/190 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFF----ACVLSPTRELAIQ 61
             GK ++  ++TGSGKT AF LPIL+ LL+   I   +  +   +    A +L PTREL++Q
Sbjct:   124 GKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQ 183

Query:    62 ISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
               +   +L   +++  ++  GG+D+ QQ     KR  I V TPGR++D L N+    +  
Sbjct:   184 CYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINY 243

Query:   122 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 181
             L+ +V DEAD+LL   F++   +IL+V    +Q   FSAT+T  +K+L    LKNPV I+
Sbjct:   244 LEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTSDIKQLANFSLKNPVFIQ 303

Query:   182 AASKYS-TVD 190
             +   +   VD
Sbjct:   304 SGMSFDKNVD 313

 Score = 211 (79.3 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 43/127 (33%), Positives = 73/127 (57%)

Query:   178 VKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             +KI   + +   + LKQ++   +  KY+   L+Y+   +  +  ++F +T   T L+ L+
Sbjct:   346 LKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLMYLL 405

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
                L  R   + G MSQ KR+ ++ KFK  E + L+ T++ASRG+DI  V  VINY++P+
Sbjct:   406 FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465

Query:   297 NSKDYIH 303
             N   Y+H
Sbjct:   466 NVIKYVH 472


>UNIPROTKB|Q8I4R9 [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 293 (108.2 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 70/190 (36%), Positives = 109/190 (57%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFF----ACVLSPTRELAIQ 61
             GK ++  ++TGSGKT AF LPIL+ LL+   I   +  +   +    A +L PTREL++Q
Sbjct:   124 GKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQ 183

Query:    62 ISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
               +   +L   +++  ++  GG+D+ QQ     KR  I V TPGR++D L N+    +  
Sbjct:   184 CYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINY 243

Query:   122 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 181
             L+ +V DEAD+LL   F++   +IL+V    +Q   FSAT+T  +K+L    LKNPV I+
Sbjct:   244 LEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTSDIKQLANFSLKNPVFIQ 303

Query:   182 AASKYS-TVD 190
             +   +   VD
Sbjct:   304 SGMSFDKNVD 313

 Score = 211 (79.3 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 43/127 (33%), Positives = 73/127 (57%)

Query:   178 VKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             +KI   + +   + LKQ++   +  KY+   L+Y+   +  +  ++F +T   T L+ L+
Sbjct:   346 LKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLMYLL 405

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
                L  R   + G MSQ KR+ ++ KFK  E + L+ T++ASRG+DI  V  VINY++P+
Sbjct:   406 FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465

Query:   297 NSKDYIH 303
             N   Y+H
Sbjct:   466 NVIKYVH 472


>MGI|MGI:1919240 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003714 "transcription corepressor activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005102 "receptor binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
            EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
            UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
            PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
            Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
            UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
            Genevestigator:Q8K4L0 Uniprot:Q8K4L0
        Length = 874

 Score = 476 (172.6 bits), Expect = 1.8e-44, P = 1.8e-44
 Identities = 121/334 (36%), Positives = 176/334 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +A+TGSGKT  F LP+ + L   A + +T     A +LSPTRELA+Q  +  + 
Sbjct:   132 GKDVVAMARTGSGKTACFLLPMFERLK--ARSAQTGAR--ALILSPTRELALQTMKFTKE 187

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    L+ A+++GG  M  Q  AL + P I++ATPGRL+ H+       L +++Y+V D
Sbjct:   188 LGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFD 246

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKY 186
             EADRL    F + L EI+  +P   QT LFSAT+ K + +  RA L  PV  +++  SK 
Sbjct:   247 EADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKL 306

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRA 244
             +  + LK  +  V    K   L+Y+L  V      T+VF  T      L  +L   G   
Sbjct:   307 N--EQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSC 364

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I   + Q+ R   L KF   +C+ LI TD+A+RGLDIP +D VINY  P   K ++H 
Sbjct:   365 AHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHR 424

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                           SLV   E+ + L +   +G+
Sbjct:   425 VGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGR 458


>RGD|1308990 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
            IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
            Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
            UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
        Length = 874

 Score = 476 (172.6 bits), Expect = 1.8e-44, P = 1.8e-44
 Identities = 109/299 (36%), Positives = 162/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LK+P  V +   +KY
Sbjct:   223 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y       K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIICELHQKISVLFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISI 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TIGR_CMR|GSU_0522 [details] [associations]
            symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
            RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
            KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
            BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
        Length = 443

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 117/318 (36%), Positives = 168/318 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFACVLSPTRELAIQISEQFE 67
             GKD+ G AQTG+GKT AF + +   LL      +R  P   A +L+PTREL +QI +  +
Sbjct:    38 GKDVAGQAQTGTGKTAAFLISLFTKLLRSGRGGERRHPR--AIILAPTRELVVQIEKDAQ 95

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              LG+        + GGVD M+Q  AL +   +VV TPGRL+D+L   K +SL  ++ LV+
Sbjct:    96 VLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVI 154

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM--RQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             DEADR+ +  F   L  IL  +P    RQ  +FSAT+ ++V +L    +  P K+    +
Sbjct:   155 DEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPE 214

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
               T + ++Q    V  K K   L+ +L +     TM+F  T      L   L        
Sbjct:   215 QMTAERVEQVLYHVGRKEKFPLLLGLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCR 274

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              ISG + Q KRL  L  FK+G+  I+I TDVASRGL I  V  VINYD+P +++DY+H  
Sbjct:   275 VISGDVEQRKRLKILEDFKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRI 334

Query:   306 XXXXXXXXXXXXISLVNQ 323
                         IS+ ++
Sbjct:   335 GRTARAGAEGKAISMADE 352


>MGI|MGI:1924841 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
            IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
            ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
            PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
            Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
            UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
            CleanEx:MM_DDX10 Genevestigator:Q80Y44
            GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
        Length = 875

 Score = 475 (172.3 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 109/299 (36%), Positives = 162/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P+L+AL  +     +       ++SPTRELA Q  E    
Sbjct:   106 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 163

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+  +   +    +I+V TPGRL+ H+  T  F    L+ LVLD
Sbjct:   164 VGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLD 222

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LK+P  V +   +KY
Sbjct:   223 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKY 282

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL+Q Y       K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   283 STPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISI 342

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q +R+   N+F      +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   343 LALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>UNIPROTKB|Q9KU63 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
            RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
            GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 116/333 (34%), Positives = 183/333 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A TG+GKT AF +P LQ LL+    ++  PA    +L+PTRELA+Q++EQ +A
Sbjct:    40 GRDVLASAPTGTGKTAAFVIPALQYLLDFPR-RKAGPARIL-ILTPTRELAMQVAEQAQA 97

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L     L    + GGV   +    L     IVVATPGRL++++ + + F    +++L+LD
Sbjct:    98 LAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILD 156

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYS 187
             EADR+L+  F  ++D +       +QT LFSAT+  + V+      LK+P  ++A     
Sbjct:   157 EADRMLDMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRR 216

Query:   188 TVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
                 + Q Y R     +K   L  ILTE  A  ++VF +T +    LA +   L +  IP
Sbjct:   217 ERKKISQWYHRADDMPHKVELLKKILTE-QAERSIVFLKTRER---LADLRAELEKAQIP 272

Query:   247 ---ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
                I G M Q +R  A+++F+ G+ NIL+ TDVA+RG+D+P +  VIN+D+P ++  Y+H
Sbjct:   273 CAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332

Query:   304 XXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                           ISLV  ++     ++E+ I
Sbjct:   333 RIGRTGRAGKKGIAISLVEAHDQPMMARVERYI 365


>TIGR_CMR|VC_0660 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
            ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
            KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 116/333 (34%), Positives = 183/333 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A TG+GKT AF +P LQ LL+    ++  PA    +L+PTRELA+Q++EQ +A
Sbjct:    40 GRDVLASAPTGTGKTAAFVIPALQYLLDFPR-RKAGPARIL-ILTPTRELAMQVAEQAQA 97

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L     L    + GGV   +    L     IVVATPGRL++++ + + F    +++L+LD
Sbjct:    98 LAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILD 156

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYS 187
             EADR+L+  F  ++D +       +QT LFSAT+  + V+      LK+P  ++A     
Sbjct:   157 EADRMLDMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRR 216

Query:   188 TVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
                 + Q Y R     +K   L  ILTE  A  ++VF +T +    LA +   L +  IP
Sbjct:   217 ERKKISQWYHRADDMPHKVELLKKILTE-QAERSIVFLKTRER---LADLRAELEKAQIP 272

Query:   247 ---ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
                I G M Q +R  A+++F+ G+ NIL+ TDVA+RG+D+P +  VIN+D+P ++  Y+H
Sbjct:   273 CAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332

Query:   304 XXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                           ISLV  ++     ++E+ I
Sbjct:   333 RIGRTGRAGKKGIAISLVEAHDQPMMARVERYI 365


>WB|WBGene00000479 [details] [associations]
            symbol:cgh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
            to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0017148 "negative regulation of translation"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 104/318 (32%), Positives = 172/318 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+ G+GKTGA+ +P+++ +      Q  + A  A V+ PTRELA+Q S+    
Sbjct:    80 GQDILARAKNGTGKTGAYCIPVIEKI------QPALKAIQAMVIVPTRELALQTSQICVE 133

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             L   I L+  V  GG D+    + L    H+V+ATPGR++D +   KG + +   K LVL
Sbjct:   134 LSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGVAKMEHCKTLVL 191

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ DF+  LD ++N +P+ RQ  L+SAT    V    +  +  P +I    + +
Sbjct:   192 DEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELT 251

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
              +  + Q Y FV  K K   L  +  ++  + +++F  +     LLA  +  +G     I
Sbjct:   252 LLG-VTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI 310

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M+Q+ R    + F+ G C  L+C+D+ +RG+DI +V++VIN+D P N++ Y+H    
Sbjct:   311 HSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGR 370

Query:   308 XXXXXXXXXXISLVNQYE 325
                       I+L+  YE
Sbjct:   371 SGRFGHLGVAINLIT-YE 387


>UNIPROTKB|Q95YF3 [details] [associations]
            symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 104/318 (32%), Positives = 172/318 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+ G+GKTGA+ +P+++ +      Q  + A  A V+ PTRELA+Q S+    
Sbjct:    80 GQDILARAKNGTGKTGAYCIPVIEKI------QPALKAIQAMVIVPTRELALQTSQICVE 133

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             L   I L+  V  GG D+    + L    H+V+ATPGR++D +   KG + +   K LVL
Sbjct:   134 LSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGVAKMEHCKTLVL 191

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ DF+  LD ++N +P+ RQ  L+SAT    V    +  +  P +I    + +
Sbjct:   192 DEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELT 251

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
              +  + Q Y FV  K K   L  +  ++  + +++F  +     LLA  +  +G     I
Sbjct:   252 LLG-VTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI 310

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M+Q+ R    + F+ G C  L+C+D+ +RG+DI +V++VIN+D P N++ Y+H    
Sbjct:   311 HSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGR 370

Query:   308 XXXXXXXXXXISLVNQYE 325
                       I+L+  YE
Sbjct:   371 SGRFGHLGVAINLIT-YE 387


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 117/335 (34%), Positives = 173/335 (51%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG DLI  ++TGSGKT AF +P LQ L +     +  P     +L+PTRELA Q+  Q  
Sbjct:    37 AGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDPR--VVILTPTRELAKQVFSQLR 94

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
                +    +  +++GG +   Q   L K P  +VATPGRL DHLT    F L  L+ L+L
Sbjct:    95 LFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLADHLTQGH-FHLNGLELLIL 153

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTK-KVKKLQRACLKNPVKIEAASK 185
             DEADR+L+  F K L +I      R RQT LFSAT+   +V +     L  P +I   + 
Sbjct:   154 DEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAG 213

Query:   186 YST-VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
             +S  VD  K+ Y       K+  L + L    +   ++FT T   T  LA +L      A
Sbjct:   214 HSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNA 273

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
             + +SG ++Q +R   +  F  G+  IL+ TD+ASRGLD+ +V  VIN+D+P ++++++H 
Sbjct:   274 VALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHR 333

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                          ISLV   +      +E  + +K
Sbjct:   334 IGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQK 368


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 117/335 (34%), Positives = 173/335 (51%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG DLI  ++TGSGKT AF +P LQ L +     +  P     +L+PTRELA Q+  Q  
Sbjct:    37 AGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDPR--VVILTPTRELAKQVFSQLR 94

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
                +    +  +++GG +   Q   L K P  +VATPGRL DHLT    F L  L+ L+L
Sbjct:    95 LFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLADHLTQGH-FHLNGLELLIL 153

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTK-KVKKLQRACLKNPVKIEAASK 185
             DEADR+L+  F K L +I      R RQT LFSAT+   +V +     L  P +I   + 
Sbjct:   154 DEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAG 213

Query:   186 YST-VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
             +S  VD  K+ Y       K+  L + L    +   ++FT T   T  LA +L      A
Sbjct:   214 HSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNA 273

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
             + +SG ++Q +R   +  F  G+  IL+ TD+ASRGLD+ +V  VIN+D+P ++++++H 
Sbjct:   274 VALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHR 333

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                          ISLV   +      +E  + +K
Sbjct:   334 IGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQK 368


>POMBASE|SPAC1093.05 [details] [associations]
            symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
            ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
            EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
            NextBio:20802723 Uniprot:Q9UTP9
        Length = 735

 Score = 469 (170.2 bits), Expect = 4.4e-44, P = 4.4e-44
 Identities = 113/300 (37%), Positives = 162/300 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A+TGSGKT AF +P+++ L    +   ++    A V+SPTRELAIQ  E    
Sbjct:    76 GRDILGAAKTGSGKTLAFIVPLIENLYR--KKWTSLDGLGALVISPTRELAIQTFETLVK 133

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G   S    +++GG +  ++   L  R +I+V TPGRL+ H+     F    L+ L+LD
Sbjct:   134 IGRLHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILD 192

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +LD I++ +P  RQT LFSAT TK VK L R  L+NP  + +      
Sbjct:   193 EADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTS 252

Query:   187 STVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQR 243
             ST   L Q Y  VP   K D    +I T +    T+VF  +C   R +    R +  G  
Sbjct:   253 STPSNLNQFYLTVPLTEKLDILFGFIRTHLKFK-TIVFLSSCKQVRFVYETFRRMRPGIS 311

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + + G   Q+ R     KF +    +L CTD+ +RGLD P+VD VI  D P +   YIH
Sbjct:   312 LLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 115/333 (34%), Positives = 170/333 (51%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPA--FFACVLSPTRELAIQISE 64
             AGKD+I  AQTG+GKT +F LP+L+ L  +  E  + + A    A +L PTRELA+Q+  
Sbjct:    37 AGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEA 96

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
                     + +    + GGVD  +Q   L     I+VATPGRL+D +T+ +      L  
Sbjct:    97 SISQYAKYLDISSMAMYGGVDAQEQKQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDM 155

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LVLDEADR+L+  F   +++I+  +P  RQ  LFSATM+++V+ L +  +  PV+I   +
Sbjct:   156 LVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGA 215

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
               ++   ++Q    V    K   L +I+T  +    ++F  T      L   L   G  A
Sbjct:   216 DKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVA 275

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I    +Q  R   LN FK+G+   L+ T +A+RGLDI  +  VINYD+P    DYIH 
Sbjct:   276 ESIHSGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHR 335

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                          ISLV++        IE  +G
Sbjct:   336 IGRTGRAGASGEAISLVSKDNFRELCAIESRLG 368


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 118/330 (35%), Positives = 175/330 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF---FACVLSPTRELAIQ--- 61
             AG+D+IG+A TGSGKT  F LP++   L+  E    + A       ++ P+RELA Q   
Sbjct:   182 AGRDMIGIAFTGSGKTLVFVLPMIMIALQ-EEMMMPIAAGEGPIGLIVCPSRELARQTYE 240

Query:    62 ISEQFEA--LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS 118
             + EQF A  + +G   LR  + +GG+DM  Q   + +  HIVVATPGRL D L   K  S
Sbjct:   241 VVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MS 299

Query:   119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
             L   +YL LDEADRL++  FE  + E+ +     RQT LFSATM  K++   R+ L  PV
Sbjct:   300 LDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPV 359

Query:   179 KIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
              +    +  + +D + Q+  +V  + K  YL+  L + S    +      D   +   +L
Sbjct:   360 TVNVGRAGAANLDVI-QEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLL 418

Query:   238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN 297
                G  A+ I G   Q  R  A++ FKAG+ ++L+ TDVAS+GLD P +  VINYD+P  
Sbjct:   419 LK-GVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 477

Query:   298 SKDYIHXXXXXXXXXXXXXXISLVNQYELE 327
              ++Y+H               + +N+ + E
Sbjct:   478 IENYVHRIGRTGRCGKTGIATTFINKNQSE 507


>UNIPROTKB|F1NTK9 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003714 "transcription corepressor
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
            EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
            Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
        Length = 822

 Score = 470 (170.5 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 119/334 (35%), Positives = 177/334 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++ +A+TGSGKT  F LP+ + L   + +        A +LSPTRELA+Q  +  + 
Sbjct:    73 GRDVVAMARTGSGKTACFLLPMFERLKAPSPSGAR-----ALILSPTRELALQTLKFTKE 127

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    L+ A+++GG  M  Q  AL + P I++ATPGRL+ H+       L +++Y+V D
Sbjct:   128 LGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFD 186

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADRL    F + L EIL  +P   QT LFSAT+ K + +  RA L  P  ++++  SK 
Sbjct:   187 EADRLFEMGFAEQLQEILARLPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKL 246

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRA 244
             S  + LK  +  V    K   L+++L  V      T+VF  T   T  L  +L + G   
Sbjct:   247 S--EQLKLAFFHVRGDDKPAVLLHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICC 304

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I   + Q+ R   + KF  G+C +L+ TDVA+RGLDIP +D VINY  P  SK ++H 
Sbjct:   305 THIYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHR 364

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                           SLV   E+ +   +   +G+
Sbjct:   365 VGRVARAGRSGTAYSLVAPDEMPYIFDLHLFLGR 398


>ZFIN|ZDB-GENE-071022-2 [details] [associations]
            symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
            Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
            Uniprot:F1QMM9
        Length = 875

 Score = 471 (170.9 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 110/303 (36%), Positives = 161/303 (53%)

Query:     5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 64
             F   G+D++G A+TGSGKT AF +P+L+ L    E    +    A ++SPTRELA Q  E
Sbjct:   103 FALQGRDVLGAAKTGSGKTLAFLIPVLECLYR--EQWTAMDGLGALIISPTRELAYQTFE 160

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
                 +G        +++GG D+  ++  +  R +I++ TPGRL+ H+  T  F    L  
Sbjct:   161 VLRKVGKNHEFSAGLVIGGKDLKDESEKI-HRTNIIICTPGRLLQHMDETATFHASDLHM 219

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEA 182
             LVLDEADR+L+  F  +L+ I+  +P+ RQT LFSAT T+ VK L R  LK+P  V +  
Sbjct:   220 LVLDEADRILDMGFADTLNAIVENLPKSRQTLLFSATQTRSVKDLARLSLKDPEYVWVHE 279

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL-- 240
              +K+ST  TL+Q Y       K   L   L        +VF   C   + L  +   L  
Sbjct:   280 QAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRP 339

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G   + + G   Q KR+   N F      +L  TD+A+RGLD P+V+ V+ +D P ++  
Sbjct:   340 GISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANT 399

Query:   301 YIH 303
             YIH
Sbjct:   400 YIH 402


>RGD|1562539 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10116 "Rattus norvegicus" [GO:0003714 "transcription
            corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
            "RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
            GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000075100 IPI:IPI00193685
            Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
            Uniprot:D3ZHY6
        Length = 906

 Score = 471 (170.9 bits), Expect = 7.3e-44, P = 7.3e-44
 Identities = 120/334 (35%), Positives = 175/334 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +A+TGSGKT  F LP+ + L   A + +T     A +LSPTRELA+Q  +  + 
Sbjct:   132 GKDVVAMARTGSGKTACFLLPMFERLK--ARSAQTGAR--ALILSPTRELALQTMKFTKE 187

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    L+ A+++GG  M  Q  AL + P I++ATPGRL+ H+       L +++Y+V D
Sbjct:   188 LGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFD 246

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKY 186
             EADRL    F + L EI+  +P   QT LFSAT+ K + +  RA L  PV  +++  SK 
Sbjct:   247 EADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKL 306

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRA 244
             +  + LK  +  V    K   L+Y+L  V       +VF  T      L  +L   G   
Sbjct:   307 N--EQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSC 364

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I   + Q+ R   L KF   +C+ LI TD+A+RGLDIP +D VINY  P   K ++H 
Sbjct:   365 AHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHR 424

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                           SLV   E+ + L +   +G+
Sbjct:   425 VGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGR 458


>UNIPROTKB|Q9KNA4 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
            PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
            DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
            Uniprot:Q9KNA4
        Length = 452

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 117/333 (35%), Positives = 176/333 (52%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+DL+  ++TGSGKT AF LP+L   L+        P     +L PTRELA Q+  +  
Sbjct:    41 AGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPR--GLILVPTRELAKQVYGELR 98

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             ++  G+S    ++ GG +   Q  AL + P  +VATPGRL DHL +   F  G L+ LVL
Sbjct:    99 SMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEG-LETLVL 157

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKK-VKKLQRACLKNPVKIE-AAS 184
             DEADR+L+  F K L  I N    R RQT +FSAT+    V  +    L  P +I     
Sbjct:   158 DEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT-CDATRLLALMLRNLGQR 243
                  D  +  Y      +K+  L  IL +      ++FT T  D  RL   + +N   +
Sbjct:   218 SEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQN-NLK 276

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ +SG+++Q++R   + +F+     IL+ TDVASRGLDIP+V  VIN+D+P ++++Y+H
Sbjct:   277 AVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVH 336

Query:   304 XXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                           +SLV   + E + ++E  +
Sbjct:   337 RVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369


>TIGR_CMR|VC_A0061 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
            ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
            ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
            KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
        Length = 452

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 117/333 (35%), Positives = 176/333 (52%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+DL+  ++TGSGKT AF LP+L   L+        P     +L PTRELA Q+  +  
Sbjct:    41 AGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPR--GLILVPTRELAKQVYGELR 98

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             ++  G+S    ++ GG +   Q  AL + P  +VATPGRL DHL +   F  G L+ LVL
Sbjct:    99 SMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEG-LETLVL 157

Query:   128 DEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKK-VKKLQRACLKNPVKIE-AAS 184
             DEADR+L+  F K L  I N    R RQT +FSAT+    V  +    L  P +I     
Sbjct:   158 DEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT-CDATRLLALMLRNLGQR 243
                  D  +  Y      +K+  L  IL +      ++FT T  D  RL   + +N   +
Sbjct:   218 SEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQN-NLK 276

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ +SG+++Q++R   + +F+     IL+ TDVASRGLDIP+V  VIN+D+P ++++Y+H
Sbjct:   277 AVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVH 336

Query:   304 XXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 336
                           +SLV   + E + ++E  +
Sbjct:   337 RVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 113/300 (37%), Positives = 161/300 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++ +A+TGSGKT  + +P    L  I  + R  P     VLSPTRELA QI E+   
Sbjct:   195 GRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTIL--VLSPTRELATQIQEEAVK 252

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
              G    + C  L GG     Q   L +   IVVATPGRL D L   +  SL  + YLVLD
Sbjct:   253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL-EMRRISLRQISYLVLD 311

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  FE  + +I+  IP  RQT +++AT  K V+K+    L NP ++   +    
Sbjct:   312 EADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371

Query:   189 V--DTLKQQYRFVPAKYKDCYLVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQR-- 243
             V   ++ Q    V    K   L  IL ++   S  ++F   C   R+   + RNL ++  
Sbjct:   372 VANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIF---CSTKRMCDQLTRNLTRQFG 428

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A  I G  SQ +R   LN+F++G   +L+ TDVA+RGLD+  +  V+NYD P   +DY+H
Sbjct:   429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488


>UNIPROTKB|P21507 [details] [associations]
            symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
            evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
            OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
            PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
            ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
            MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
            EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
            KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
            EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
            BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
            Genevestigator:P21507 Uniprot:P21507
        Length = 444

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 108/319 (33%), Positives = 165/319 (51%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A TG+GKT A+ LP LQ LL+    +   P     +L+PTRELA+Q+S+    
Sbjct:    41 GRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL--ILTPTRELAMQVSDHARE 98

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             L     L  A + GGV  M       +   IVVAT GRL+ ++   + F    ++ L+LD
Sbjct:    99 LAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILD 157

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT-KKVKKLQRACLKNPVKIEAASKYS 187
             EADR+L+  F + ++ I       +QT LFSAT+    ++      L++PV++ A     
Sbjct:   158 EADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTR 217

Query:   188 TVDTLKQ-QYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
                 + Q  YR    ++K   LV++L +  A+ ++VF R  +    LA  LR  G     
Sbjct:   218 ERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCY 277

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             + G M Q KR  A+ +   G  N+L+ TDVA+RG+DIP V  V N+D+P +   Y+H   
Sbjct:   278 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 337

Query:   307 XXXXXXXXXXXISLVNQYE 325
                        ISLV  ++
Sbjct:   338 RTARAGRKGTAISLVEAHD 356


>UNIPROTKB|E1BGI6 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0003714 "transcription corepressor activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
            IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
        Length = 877

 Score = 468 (169.8 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 118/334 (35%), Positives = 177/334 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +A+TGSGKT  F +P+ + L     + +T     A +LSPTRELA+Q  +  + 
Sbjct:   133 GKDVVAMARTGSGKTACFLIPMFERLK--THSAQTGAR--ALILSPTRELALQTMKFTKE 188

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    L+ A+++GG  M  Q  AL + P I++ATPGRL+ H+       L +++Y+V D
Sbjct:   189 LGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFD 247

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKY 186
             EADRL    F + L EI+  +P   QT LFSAT+ K + +  RA L  PV  +++  SK 
Sbjct:   248 EADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKL 307

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRA 244
             +  + LK  +  V    K   L+++L  V      T+VF  T      L+ +L   G   
Sbjct:   308 N--EQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSC 365

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               I   + Q+ R   L +F  G+C+ LI TD+A+RGLDIP +D VINY  P   K ++H 
Sbjct:   366 AHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHR 425

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                           SLV   E+ + L +   +G+
Sbjct:   426 VGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGR 459


>WB|WBGene00006888 [details] [associations]
            symbol:vbh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0032502 "developmental process"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
            germ-line" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
            GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
            ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
            MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
            EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
            GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
            WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
            ArrayExpress:Q65XX1 Uniprot:Q65XX1
        Length = 660

 Score = 460 (167.0 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 123/312 (39%), Positives = 179/312 (57%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF-------FAC--VLSPTREL 58
             A +DL+  AQTGSGKT AF LPI+Q +L    +    PAF       + C  VLSPTREL
Sbjct:   175 ANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTREL 234

Query:    59 AIQISEQFEALGSGISLRCAVLVGGVDMMQ-QTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             AIQI ++        +++ A+L GG +  + Q   L    HI++ATPGRL+D +   +GF
Sbjct:   235 AIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIE--QGF 292

Query:   118 -SLGTLKYLVLDEADRLLNDDFEKSLDEILN--VIPRM-RQTYLFSATMTKKVKKLQRAC 173
               L   +YLVLDEADR+L+  FE  + +I+   + P+  R T +FSAT  K+++ L +  
Sbjct:   293 IGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDF 352

Query:   174 LK-NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL-TEVSASSTMVFTRTCDATR 231
             LK N + +      ST + ++Q+  +V    K   L+ IL  E S +  +VF  T     
Sbjct:   353 LKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGAN 412

Query:   232 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN 291
              LA  L     R++ I G + Q +R   L  F++G+C IL+ T VA+RGLDIP+V  VIN
Sbjct:   413 ELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVIN 472

Query:   292 YDIPTNSKDYIH 303
             YD+P +S +Y+H
Sbjct:   473 YDLPGDSDEYVH 484


>UNIPROTKB|Q8EGU0 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 114/331 (34%), Positives = 175/331 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  AQTG+GKT AFALP+L+   ++A      P   A V++PTRELAIQ+    + 
Sbjct:    38 GKDIMACAQTGTGKTAAFALPVLE---QLAAKPADKPLLRALVMTPTRELAIQVCANIQK 94

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                 + L+   + GG +M  Q   + +   I+VATPGRL D +       L ++  LV+D
Sbjct:    95 YSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFD-IIGQFNLDLSSVTTLVID 153

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F + ++++  +I  + QT LFSAT +  VK+L    L  P  +  A   +T
Sbjct:   154 EADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAEN-TT 212

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
               T++Q    V  + K   L  ++   +    +VF  T +    L   L   G  A    
Sbjct:   213 ASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFH 272

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G  +Q  R   L+ FKAG+  +L+ TDVA+RGLDI ++ +VIN ++P  ++DY+H     
Sbjct:   273 GDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRT 332

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      IS V+  + E   +IE LIG+K
Sbjct:   333 GRAGLSGRAISFVSPADDEMLAEIEALIGEK 363


>TIGR_CMR|SO_1501 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 114/331 (34%), Positives = 175/331 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++  AQTG+GKT AFALP+L+   ++A      P   A V++PTRELAIQ+    + 
Sbjct:    38 GKDIMACAQTGTGKTAAFALPVLE---QLAAKPADKPLLRALVMTPTRELAIQVCANIQK 94

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                 + L+   + GG +M  Q   + +   I+VATPGRL D +       L ++  LV+D
Sbjct:    95 YSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFD-IIGQFNLDLSSVTTLVID 153

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADR+L+  F + ++++  +I  + QT LFSAT +  VK+L    L  P  +  A   +T
Sbjct:   154 EADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAEN-TT 212

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
               T++Q    V  + K   L  ++   +    +VF  T +    L   L   G  A    
Sbjct:   213 ASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFH 272

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
             G  +Q  R   L+ FKAG+  +L+ TDVA+RGLDI ++ +VIN ++P  ++DY+H     
Sbjct:   273 GDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRT 332

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                      IS V+  + E   +IE LIG+K
Sbjct:   333 GRAGLSGRAISFVSPADDEMLAEIEALIGEK 363


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 109/304 (35%), Positives = 169/304 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD++G+A+TGSGKT AF +P +  L+   + +R +      V+SPTRELA QI +   
Sbjct:   148 SGKDVVGVAETGSGKTFAFGVPAISHLMN-DQKKRGIQVL---VISPTRELASQIYDNLI 203

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L   + ++C  + GGV   +Q + L K+  +VVATPGRL+D L       L  + YLVL
Sbjct:   204 VLTDKVGMQCCCVYGGVPKDEQRIQL-KKSQVVVATPGRLLD-LLQEGSVDLSQVNYLVL 261

Query:   128 DEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-- 184
             DEADR+L   FE+ +  I+       RQT +F+AT  K+V++L    + NP+K+   +  
Sbjct:   262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-----STMVFTRTCDATRLLALMLRN 239
             + +    + Q    V  + K+  L+ +L +  +        ++F         +   L+ 
Sbjct:   322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query:   240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299
              G     I G +SQ +R  ALN+FK+G+ N+L+ TDVA+RGLDIP+V  VIN   P   +
Sbjct:   382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query:   300 DYIH 303
             DY+H
Sbjct:   442 DYVH 445


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 460 (167.0 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 115/301 (38%), Positives = 166/301 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D++ +A+TGSGKT  + +P    L  I  + R  P     VLSPTRELA QI  Q EAL
Sbjct:   267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTIL--VLSPTRELATQI--QVEAL 322

Query:    70 --GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    + CA L GG     Q   + +   IVVATPGRL D L   K  SL  + YLVL
Sbjct:   323 KFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL-EMKRISLHQVSYLVL 381

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADR+L+  FE  + +I+N +P  RQT +++AT  K+V+K+    L NP ++   +   
Sbjct:   382 DEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDE 441

Query:   188 TV--DTLKQQYRFVPAKYKDCYLVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQR- 243
              V   ++ Q    +    K   L  IL ++   S  ++F   C   R+   + RNL +  
Sbjct:   442 LVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF---CSTKRMCDQLARNLTRTF 498

Query:   244 -AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
              A  I G  SQ++R   LN+F++G   +L+ TDVA+RGLD+  + +V+NYD P   +DY+
Sbjct:   499 GAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYV 558

Query:   303 H 303
             H
Sbjct:   559 H 559


>TAIR|locus:2098886 [details] [associations]
            symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
            EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
            PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
            UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
            PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
            EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
            GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
            PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
            GermOnline:AT3G61240 Uniprot:Q9M2E0
        Length = 498

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 109/331 (32%), Positives = 180/331 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D++  A+ G+GKTGAF +P+L+   +I  N   + A    +L PTRELA+Q S+  + 
Sbjct:   161 GSDILARAKNGTGKTGAFCIPVLE---KIDPNNNVIQAM---ILVPTRELALQTSQVCKE 214

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             L   ++++  V  GG  +    + L +  H++V TPGR++D LT  KG   L     LV+
Sbjct:   215 LSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD-LTK-KGVCVLKDCAMLVM 272

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ +F+ SL+E++  +P+ RQ  +FSAT    VK  +   L+ P  I    +  
Sbjct:   273 DEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQL- 331

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T+  + Q Y FV  + K   L  + +++  + +++F  + +   LLA  +  LG     I
Sbjct:   332 TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 391

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M Q  R    ++F+ G C  L+CTD+ +RG+DI +V++VIN+D P  S+ Y+H    
Sbjct:   392 HAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 451

Query:   308 XXXXXXXXXXISLVNQYELEWYL-QIEKLIG 337
                       ++LV  YE  + + Q E+ +G
Sbjct:   452 SGRFGHLGLAVNLVT-YEDRFKMYQTEQELG 481


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 106/331 (32%), Positives = 181/331 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+ G+GKT AF +P+L+   +I ++   + A    ++ PTRELA+Q S+  + 
Sbjct:   168 GRDILARAKNGTGKTAAFCIPVLE---KIDQDNNVIQAV---IIVPTRELALQTSQVCKE 221

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             LG  + ++  V  GG  +    + L +  H++V TPGR++D LT  KG   L     LV+
Sbjct:   222 LGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LTK-KGVCVLKDCSVLVM 279

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ +F+ S++ +++ +P  RQ  +FSAT    VK  +   L NP  I    +  
Sbjct:   280 DEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL- 338

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T+  + Q Y FV  + K   L  + +++  + +++F  + +   LLA  +  LG     I
Sbjct:   339 TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 398

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M Q  R    + F+ G C  L+CTD+ +RG+DI +V++VIN+D P N++ Y+H    
Sbjct:   399 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGR 458

Query:   308 XXXXXXXXXXISLVNQYELEWYL-QIEKLIG 337
                       ++L+  YE  + L +IE+ +G
Sbjct:   459 SGRFGHLGLAVNLIT-YEDRFNLYRIEQELG 488


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 461 (167.3 bits), Expect = 3.8e-43, P = 3.8e-43
 Identities = 116/305 (38%), Positives = 179/305 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAEN----QRT--VPAFFACVLSPTRELAIQI 62
             G+D+I  A+TG+GKT AF +PI++ L E A +    +R+  +P F   VL+PTRELA Q+
Sbjct:   139 GRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFL--VLAPTRELAKQV 196

Query:    63 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122
              ++ +     +S  C  + GGV    Q  AL +   +VV TPGR++D L   +   LG +
Sbjct:   197 EKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLGEV 253

Query:   123 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 182
             +YLVLDEAD++L   FE++++ IL  +P  RQ+ LFSATM   VKKL R  L NP+ I+ 
Sbjct:   254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313

Query:   183 ASKYST--VDTLKQQYRFVPAKYKDCYLVYILTEVS-ASSTMVFTRTC-DATRLLALMLR 238
                      + +K       +  K   L  ++T  +    T+VFT+T  DA  +   +  
Sbjct:   314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373

Query:   239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
             ++   A+   G +SQ +R   LN F+ G+  +L+ TDVASRGLDIP+VD+VI+Y++P + 
Sbjct:   374 SIATEAL--HGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDP 431

Query:   299 KDYIH 303
             + ++H
Sbjct:   432 ETFVH 436


>UNIPROTKB|A4RGU2 [details] [associations]
            symbol:DBP4 "ATP-dependent RNA helicase DBP4"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
            RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
            EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
            Uniprot:A4RGU2
        Length = 798

 Score = 462 (167.7 bits), Expect = 4.2e-43, P = 4.2e-43
 Identities = 111/301 (36%), Positives = 164/301 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++G A+TGSGKT AF +P+L+ L      Q       A VLSPTRELA+Q  +    
Sbjct:    86 GRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEA--KLGALVLSPTRELAVQTFQVLRK 143

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG  + ++  AL  R +I++ TPGR++ HL  T GF +  L+ LVLD
Sbjct:   144 IGRHHLFSAGLVIGGKSVREEAEALS-RMNILIGTPGRILQHLDQTHGFDVDNLQLLVLD 202

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+++  F++ +D ++  +P  RQT LFSAT +KKV  L R  LK+P  V + A +  
Sbjct:   203 EADRIMDLGFQRDVDALVQHLPTTRQTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATT 262

Query:   187 STVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
             +T  TL+Q Y   P   K D    +I   +  S  +VF  +    R +    R + Q  I
Sbjct:   263 ATPSTLQQHYIVTPLPEKLDTLWGFIKANLK-SKMVVFLSSGKQVRFVYESFRQM-QPGI 320

Query:   246 PI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
             P+    G   Q  RL    +F + +   L  TDV +RG+D   VD V+  D P ++ DYI
Sbjct:   321 PLLHMHGRQKQLARLDVTKRFDSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYI 380

Query:   303 H 303
             H
Sbjct:   381 H 381


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 112/307 (36%), Positives = 171/307 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   216 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 273

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   L CA+ +GGV + +Q   +    HI+VATPGRLMD L   K  
Sbjct:   274 GILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLMD-LLQKKMV 332

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   333 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 392

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   393 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYL 451

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   452 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 510

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   511 EIENYVH 517


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   217 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 274

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   275 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 333

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   334 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 393

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   394 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 452

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   453 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   512 EIENYVH 518


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   217 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 274

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   275 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 333

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   334 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 393

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   394 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 452

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   453 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   512 EIENYVH 518


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   235 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 292

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   293 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 351

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   352 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 411

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   412 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 470

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   471 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 529

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   530 EIENYVH 536


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   217 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 274

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   275 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 333

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   334 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 393

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   394 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 452

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   453 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   512 EIENYVH 518


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   217 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 274

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   275 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 333

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   334 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 393

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   394 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 452

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   453 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   512 EIENYVH 518


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   217 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 274

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   275 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 333

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   334 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 393

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   394 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 452

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   453 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   512 EIENYVH 518


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 453 (164.5 bits), Expect = 7.5e-43, P = 7.5e-43
 Identities = 111/307 (36%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   244 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 301

Query:    62 -ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    S   LRCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   302 GILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMV 360

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   361 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 420

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   421 VTINVGRAGAASLDVI-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 479

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   480 LLK-GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 538

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   539 EIENYVH 545


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 109/331 (32%), Positives = 171/331 (51%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-ACVLSPTRELAIQISEQF 66
             AGK+++  AQTG+GKT +F LP+L      A+  +  P    + +L+PTRELA+Q+ +  
Sbjct:    37 AGKNVLAAAQTGTGKTASFVLPLLH---RFADAPKIRPKRVRSIILTPTRELALQVEQNI 93

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
                   + L    + GGVD   Q   L +   ++VATPGRL+D  T  +      +  LV
Sbjct:    94 NQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLDMYTQ-RAIRFDEVSVLV 152

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEADR+L+  F + ++ I+  +P  RQ  LFSAT++K+VK L +  + + ++IE + K 
Sbjct:   153 LDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKN 212

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             +    + Q    V    K   L +++ E + +  ++F +T      L   L   G  A  
Sbjct:   213 AASTQIDQWLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEA 272

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
                  SQ+ R   L  FKAG+   L+ T V SRG+DI +++ VINYD+P  + DYIH   
Sbjct:   273 FHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIG 332

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                        IS V++ +      IE+ +G
Sbjct:   333 RTGRAGNQGEAISFVSKDDFRNLCAIERRLG 363


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 109/331 (32%), Positives = 171/331 (51%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-ACVLSPTRELAIQISEQF 66
             AGK+++  AQTG+GKT +F LP+L      A+  +  P    + +L+PTRELA+Q+ +  
Sbjct:    37 AGKNVLAAAQTGTGKTASFVLPLLH---RFADAPKIRPKRVRSIILTPTRELALQVEQNI 93

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
                   + L    + GGVD   Q   L +   ++VATPGRL+D  T  +      +  LV
Sbjct:    94 NQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLDMYTQ-RAIRFDEVSVLV 152

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEADR+L+  F + ++ I+  +P  RQ  LFSAT++K+VK L +  + + ++IE + K 
Sbjct:   153 LDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKN 212

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             +    + Q    V    K   L +++ E + +  ++F +T      L   L   G  A  
Sbjct:   213 AASTQIDQWLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEA 272

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
                  SQ+ R   L  FKAG+   L+ T V SRG+DI +++ VINYD+P  + DYIH   
Sbjct:   273 FHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIG 332

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                        IS V++ +      IE+ +G
Sbjct:   333 RTGRAGNQGEAISFVSKDDFRNLCAIERRLG 363


>UNIPROTKB|Q8EIE5 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 113/298 (37%), Positives = 167/298 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D+IG  +TGSGKT AF L +L  L       +T+      VL PTRELA Q++++  
Sbjct:    37 AGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTL------VLCPTRELADQVAQEIR 90

Query:    68 ALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
              L  GI +++   L GGV M  Q  +L    HI+V TPGR++DHL   +   L  L  LV
Sbjct:    91 TLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLV 149

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEADR+L   F+  LD I+   PR RQT LFSAT  ++++ + +  + NPV ++AA  +
Sbjct:   150 LDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTH 209

Query:   187 STVDTLKQQ-YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                +T++Q  Y+    K +   L  +L E    S +VF  T   T+ +A  L  LG   +
Sbjct:   210 EK-NTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVL 268

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + G + Q  R   L +F      +L+ TDVA+RGLDI ++D V NY +  +++ +IH
Sbjct:   269 ALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIH 326


>TIGR_CMR|SO_0897 [details] [associations]
            symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 113/298 (37%), Positives = 167/298 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             AG+D+IG  +TGSGKT AF L +L  L       +T+      VL PTRELA Q++++  
Sbjct:    37 AGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTL------VLCPTRELADQVAQEIR 90

Query:    68 ALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
              L  GI +++   L GGV M  Q  +L    HI+V TPGR++DHL   +   L  L  LV
Sbjct:    91 TLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLV 149

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             LDEADR+L   F+  LD I+   PR RQT LFSAT  ++++ + +  + NPV ++AA  +
Sbjct:   150 LDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTH 209

Query:   187 STVDTLKQQ-YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                +T++Q  Y+    K +   L  +L E    S +VF  T   T+ +A  L  LG   +
Sbjct:   210 EK-NTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVL 268

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
              + G + Q  R   L +F      +L+ TDVA+RGLDI ++D V NY +  +++ +IH
Sbjct:   269 ALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIH 326


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 459 (166.6 bits), Expect = 2.4e-42, P = 2.4e-42
 Identities = 111/299 (37%), Positives = 164/299 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69
             +D++ +A+TGSGKT  + +P    L     + R  P     +L+PTRELA QI ++    
Sbjct:   473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVL--ILAPTRELATQIQDEALRF 530

Query:    70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 129
             G    + C  L GG     Q   L +   IVVATPGRL D L   K      +  LVLDE
Sbjct:   531 GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL-EMKMIDFQQVSLLVLDE 589

Query:   130 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA--SKYS 187
             ADR+L+  FE  + +I+N IP  RQT +++AT  K+V+K+    L NPV++      + +
Sbjct:   590 ADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELA 649

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQR--A 244
                 + Q    VP   K+  L  IL ++   S  ++F   C   RL   + R++G+   A
Sbjct:   650 ANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIF---CSTKRLCDHLARSVGRHFGA 706

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + I G  +Q +R   LN+F++G+  +LI TDVA+RGLDI  + +VINYD PT  +DY+H
Sbjct:   707 VVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 110/307 (35%), Positives = 172/307 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP++   LE    +  ++R  P  +  ++ P+RELA Q  
Sbjct:   213 SGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTH 270

Query:    62 -ISEQFEALGSGISL---RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              I E +  L    SL   RCA+ +GG+ + +Q   +    H++VATPGRLMD L   K  
Sbjct:   271 GIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMD-LLQKKMV 329

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   +YL LDEADR+++  FE  +  I +     RQT LFSATM KK++   ++ L  P
Sbjct:   330 SLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP 389

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             + I    +  +++D + Q+  +V  + K  YL+  L +      +   +  D   +   +
Sbjct:   390 ITINVGRAGAASLDVV-QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYL 448

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A+  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P 
Sbjct:   449 LLK-GVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPE 507

Query:   297 NSKDYIH 303
               ++Y+H
Sbjct:   508 EIENYVH 514


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 113/299 (37%), Positives = 166/299 (55%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP--AFFACVLSPTRELAIQISEQF 66
             G+DLIG+A+TGSGKT A+ LP   AL+ ++   R          +L+PTRELA+QI E+ 
Sbjct:   202 GRDLIGIAETGSGKTLAYLLP---ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
                G    +R   + GG     Q   L +   IV+ATPGRL+D L   +  +L  + YLV
Sbjct:   259 RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML-ECQHTNLKRVTYLV 317

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVK-IEAASK 185
             LDEADR+L+  FE  + +I++ I   RQT L+SAT  ++V+ L R  L++P K I  ++ 
Sbjct:   318 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD 377

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRA 244
                  ++ Q    VP   K   L+ +L ++   S  ++F  T      +   LR  G  A
Sbjct:   378 LKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPA 437

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + I G  +QS+R   L +FK+G   I+  TDVA+RGLD+  +  V+NYD P   +DYIH
Sbjct:   438 LAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 454 (164.9 bits), Expect = 3.5e-42, P = 3.5e-42
 Identities = 118/302 (39%), Positives = 165/302 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+DL+G+AQTGSGKT A+ LP   A++ I    R        A VL+PTRELA QI + 
Sbjct:   193 SGRDLVGVAQTGSGKTLAYVLP---AVVHINNQPRLERGDGPIALVLAPTRELAQQIQQV 249

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
                 GS   +R   + GG    QQ   L +   IV+ATPGRL+D L      SL    YL
Sbjct:   250 AIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTT-SLKRCTYL 308

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS- 184
             VLDEADR+L+  FE  + +I+  I   RQ  ++SAT  K+V++L    L N +++   S 
Sbjct:   309 VLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSL 368

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS---TMVFTRTCDATRLLALMLRNLG 241
               S    + Q         K   L+ +LT++SA +   T++F  T      +   +   G
Sbjct:   369 SLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQG 428

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
              RA  I G  SQ +R   L+ F+ G  +IL+ TDVA+RGLD+  V  VINYD P+NS+DY
Sbjct:   429 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 488

Query:   302 IH 303
             +H
Sbjct:   489 VH 490


>UNIPROTKB|F1P0I3 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
            OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
            Uniprot:F1P0I3
        Length = 875

 Score = 455 (165.2 bits), Expect = 3.5e-42, P = 3.5e-42
 Identities = 104/299 (34%), Positives = 162/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P L+ L  +     +       ++SPTRELA Q  +    
Sbjct:   110 GKDVLGAAKTGSGKTLAFIVPALELLYRL--QWTSADGLGVLIISPTRELAFQTFKVLRK 167

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+ +++  +    ++++ TPGRL+ H+  T  F    L+ L+LD
Sbjct:   168 VGKNHDFSAGLIIGGKDLKEESERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILD 226

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LK+P  V +   +K+
Sbjct:   227 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKF 286

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL Q Y     ++K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   287 STPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPV 346

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q KR+     F   +  +L  TD+A+RGLD P+V+ VI +D P ++  YIH
Sbjct:   347 LALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIH 405


>UNIPROTKB|Q5ZJF6 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
            UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
            STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
            HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
            NextBio:20822084 Uniprot:Q5ZJF6
        Length = 875

 Score = 455 (165.2 bits), Expect = 3.5e-42, P = 3.5e-42
 Identities = 104/299 (34%), Positives = 162/299 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++G A+TGSGKT AF +P L+ L  +     +       ++SPTRELA Q  +    
Sbjct:   110 GKDVLGAAKTGSGKTLAFIVPALELLYRL--QWTSADGLGVLIISPTRELAFQTFKVLRK 167

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G        +++GG D+ +++  +    ++++ TPGRL+ H+  T  F    L+ L+LD
Sbjct:   168 VGKNHDFSAGLIIGGKDLKEESERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILD 226

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADR+L+  F  +++ I+  +P+ RQT LFSAT TK VK L R  LK+P  V +   +K+
Sbjct:   227 EADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKF 286

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRA 244
             ST  TL Q Y     ++K   L   L       ++VF  +C   + L  +   L  G   
Sbjct:   287 STPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPV 346

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G   Q KR+     F   +  +L  TD+A+RGLD P+V+ VI +D P ++  YIH
Sbjct:   347 LALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIH 405


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 116/346 (33%), Positives = 183/346 (52%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFACVLSPTRELAIQI- 62
             AG+DLIG+A TGSGKT  F LP++   LE    +   +   P  +  ++ P+RELA Q  
Sbjct:   213 AGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGP--YGLIICPSRELAKQTH 270

Query:    63 ------SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG 116
                   S+  +A G    +R  + +GG+ + +    + +  HIVVATPGRLMD L + K 
Sbjct:   271 EIIQHYSKHLQACGMP-EIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDML-DKKI 328

Query:   117 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN 176
              +L   +YL +DEADR+++  FE+ +  I +     RQT LFSATM KK++   R+ L  
Sbjct:   329 LTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVK 388

Query:   177 PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             PV I      +    + QQ  +V  + K  YL+  L + +A   ++F         +   
Sbjct:   389 PVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQK-TAPPVLIFAEKKQDVDCIHEY 447

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q +R  A++ ++ G+ ++L+ TDVAS+GLD P+V  VINYD+P 
Sbjct:   448 LLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPD 507

Query:   297 NSKDYIHXXXXXXXXXXXXXXISLVNQY-ELEWYLQIEKLI--GKK 339
             + ++Y+H               +L+N+  E    L ++ L+  GK+
Sbjct:   508 DIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQ 553


>UNIPROTKB|Q8TDD1 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0005102
            "receptor binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
            "RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
            IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
            RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
            SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
            DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
            DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
            GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
            CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
            MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
            HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
            NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
            Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
        Length = 881

 Score = 454 (164.9 bits), Expect = 4.6e-42, P = 4.6e-42
 Identities = 117/332 (35%), Positives = 169/332 (50%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +A+TGSGKT  F LP+ + L     + +T     A +LSPTRELA+Q  +  + 
Sbjct:   133 GKDVVAMARTGSGKTACFLLPMFERLK--THSAQTGAR--ALILSPTRELALQTLKFTKE 188

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    L+ A+++GG  M  Q  AL + P I++ATPGRL+ H+       L +++Y+V D
Sbjct:   189 LGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFD 247

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRL    F + L EI+  +P   QT LFSAT+ K + +  RA L  PV I        
Sbjct:   248 EADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKL 307

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              + LK  +  V    K   L+++L  V      T+VF  T      L  +L         
Sbjct:   308 NEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAH 367

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I   +  + R   L KF  G+C+ LI TD+A+RGLDIP +D VINY  P   K ++H   
Sbjct:   368 IYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVG 427

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                         SLV   E+ + L +   +G+
Sbjct:   428 RVARAGRSGTAYSLVAPDEIPYLLDLHLFLGR 459


>TIGR_CMR|CPS_4097 [details] [associations]
            symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
            ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
            STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
            PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
            Uniprot:Q47WS0
        Length = 430

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 117/329 (35%), Positives = 169/329 (51%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF-FACVLSPTRELAIQISEQFE 67
             GKD++  A TG+GKT AF LPI Q LL+     RT P F    +L+PTRELAIQI E  E
Sbjct:    50 GKDVLASAPTGTGKTAAFLLPIAQHLLDYP---RTKPGFPRVLILTPTRELAIQIGEDSE 106

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L     ++  V+ GGV+       L     I+VATPGRL++++ N + F    ++ LVL
Sbjct:   107 QLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPGRLLEYIENEQ-FDAREIEILVL 165

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKY 186
             DEADR+L+  F ++++ I+      +QT LFSAT+    V+      L  PV +E+    
Sbjct:   166 DEADRMLDLGFSETINRIVAEARWRKQTMLFSATLESPGVQLFAEEVLNEPVFLESKPSR 225

Query:   187 STVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
                  + Q       A +K   LV  L +     T+VF    +  + L+  L       +
Sbjct:   226 KEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVFANKRETVQYLSGKLYAEELPCV 285

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              + G M Q KR  A+ +FK GE  +L+ TDVA+RGLDI  +  VIN+D+P     YIH  
Sbjct:   286 WLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRI 345

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQIEK 334
                         ISLV  +++    +IE+
Sbjct:   346 GRTGRAGKKGTAISLVEAHDMGVIGKIER 374


>TAIR|locus:2034481 [details] [associations]
            symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
            EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
            OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
            IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
            UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
            PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
            KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
            PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
            GermOnline:AT1G31970 Uniprot:Q9C551
        Length = 537

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 117/312 (37%), Positives = 173/312 (55%)

Query:     4 W-FCDAGKDLIGLAQTGSGKTGAFALPILQALLE----IAENQRTVPAFFAC-VLSPTRE 57
             W F   G+DLIG+A+TGSGKT AF +P +  +L+    I    + V     C VLSPTRE
Sbjct:   145 WPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNP--TCLVLSPTRE 202

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QIS+     G    L+   + GG     Q  A+     IV+ TPGRL D L  +   
Sbjct:   203 LAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD-LIESNVL 261

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK-N 176
              L  + ++VLDEADR+L+  FE+ +  IL+   ++RQ  +FSAT    V KL +  +  N
Sbjct:   262 RLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPN 321

Query:   177 PVKIEAAS-KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS---TMVFTR-TCDATR 231
             P+K+   S   +    + Q    +  + +D  L+ +L +   S     +VF     +A R
Sbjct:   322 PIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAER 381

Query:   232 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN 291
             L    L+  G +A+ I G+ +QS+R  +L+ FK G C +L+ TDVA+RGLDIP V++VIN
Sbjct:   382 L-ERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVIN 440

Query:   292 YDIPTNSKDYIH 303
             Y  P  ++DY+H
Sbjct:   441 YTFPLTTEDYVH 452


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 109/336 (32%), Positives = 179/336 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D+IG A+TG+GKT AF +PI+  +++              VL+PTRELA Q+ ++F  
Sbjct:   141 GRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE 200

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
                 +   C  L GG  + QQ   L     + V TPGR++D L      +L  ++++VLD
Sbjct:   201 SAPSLDTIC--LYGGTPIGQQMRQLDYGVDVAVGTPGRVID-LMKRGALNLSEVQFVVLD 257

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA--SKY 186
             EAD++L   F + ++ IL  +P  RQ+ +FSATM   ++ L +  L NP+ ++    S  
Sbjct:   258 EADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQ 317

Query:   187 STVDTLKQQYRFVPAKYKDCYLVY-ILTE-VSASSTMVFTRTC-DATRLLALMLRNLGQR 243
                D +   Y  +   Y    ++  ++TE       +VFT+T  DA RL   + R+    
Sbjct:   318 KLADGITT-YSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCE 376

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+   G +SQS+R   L  F+ G  NIL+ TDVA+RGLD+P+VD++I+Y++P N++ ++H
Sbjct:   377 AL--HGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVH 434

Query:   304 XXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
                           I + +Q +      IE+ +G +
Sbjct:   435 RTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSR 470


>TAIR|locus:2076436 [details] [associations]
            symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
            EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
            RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
            SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
            EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
            GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
            ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
            Uniprot:Q9M2F9
        Length = 646

 Score = 445 (161.7 bits), Expect = 6.5e-42, P = 6.5e-42
 Identities = 117/311 (37%), Positives = 167/311 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALL--EIAENQRTVPAFF--ACVLSPTRELAIQIS 63
             AG+DL+  AQTGSGKT AF  PI+  ++  +  E  R V   +  A +LSPTRELA QI 
Sbjct:   182 AGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIH 241

Query:    64 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
             ++         ++  V  GG  + QQ   L +   I+VATPGRL D L   +  SL  ++
Sbjct:   242 DEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGR-VSLQMVR 300

Query:   124 YLVLDEADRLLNDDFEKSLDEILNVI----PRMRQTYLFSATMTKKVKKLQRACLKNPVK 179
             +L LDEADR+L+  FE  + +I+  +    P +RQT LFSAT  +++++L    L N + 
Sbjct:   301 FLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIF 360

Query:   180 IEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL-------TEVSASSTMVFTRTCDATRL 232
             +      S+ D + Q+  FV    K  +L+ +L        +   + T+VF  T      
Sbjct:   361 LAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADS 420

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L   G  A  I G  SQ +R  AL  FK G   IL+ TDVA+RGLDIP V  V+N+
Sbjct:   421 LENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNF 480

Query:   293 DIPTNSKDYIH 303
             D+P +  DY+H
Sbjct:   481 DLPNDIDDYVH 491


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 446 (162.1 bits), Expect = 8.0e-42, P = 8.0e-42
 Identities = 114/308 (37%), Positives = 170/308 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALP-ILQALLEIAEN---QRTVPAFFACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP +L AL E  +    Q   P  F  +L P+RELA Q  
Sbjct:   258 SGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGP--FGLILCPSRELARQTY 315

Query:    62 --ISEQFEAL---GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG 116
               ++    AL   G    LR  + +GG+D+ +Q     K  H+++ATPGRL+D L N K 
Sbjct:   316 DLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLD-LLNKKK 374

Query:   117 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN 176
              +    KYL LDEADRL++  FE  +  +L+     RQT LFSATM KK+++  R+ L  
Sbjct:   375 INFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVL 434

Query:   177 PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA-L 235
             PV++      +    + Q+  FV  + K  YL+  L +      +      D   +   L
Sbjct:   435 PVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYL 494

Query:   236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295
             +L+ +   A+ I G  SQ +R  A+  F+ G+ ++L+ TDVAS+GLD P +  VIN+D+P
Sbjct:   495 LLKQV--EAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMP 552

Query:   296 TNSKDYIH 303
                ++YIH
Sbjct:   553 REIENYIH 560


>UNIPROTKB|F1N0P2 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
            UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
            Uniprot:F1N0P2
        Length = 392

 Score = 283 (104.7 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 65/163 (39%), Positives = 88/163 (53%)

Query:   181 EAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS----STMVFTRTCDATRLLALM 236
             EA +   TV+ L Q+Y  VP K KD YLV+++          S ++FT TC   ++L +M
Sbjct:   117 EAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMM 176

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             LR      + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P 
Sbjct:   177 LRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPG 236

Query:   297 NSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 339
               K YIH              I+LV QY++     IE+ I KK
Sbjct:   237 LPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 279

 Score = 176 (67.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 39/76 (51%), Positives = 52/76 (68%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +G A+TGSGKT AF LPILQ L   +E+   +   F  VL+PTRELA QI+EQF  
Sbjct:    39 GRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGI---FCLVLTPTRELAYQIAEQFRV 92

Query:    69 LGSGISLRCAVLVGGV 84
             LG  + L+  ++VGG+
Sbjct:    93 LGKPLGLKDCIIVGGL 108


>ASPGD|ASPL0000036135 [details] [associations]
            symbol:AN10417 species:162425 "Emericella nidulans"
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
            cycle arrest in response to nitrogen starvation" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IEA]
            [GO:0000290 "deadenylation-dependent decapping of
            nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
            conjugation upon nitrogen starvation" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
            EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
        Length = 498

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 104/330 (31%), Positives = 174/330 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+ G+GKT AF +P L+ +     N ++     A +L PTRELA+Q S   + 
Sbjct:    76 GRDILARAKNGTGKTAAFVIPTLERI-----NPKSTKTQ-ALILVPTRELALQTSHVCKT 129

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             LG  + +   V  GG  +M   + L    HI+V TPGR++D    +KG + L      V+
Sbjct:   130 LGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD--LASKGVADLSECPTFVM 187

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ +F   ++++L+  P+ RQ  LFSAT    VK  +   ++NP +I    +  
Sbjct:   188 DEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLMDEL- 246

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T+  + Q Y FV  K K   L  + +++  + +++F  + +   LLA  +  LG      
Sbjct:   247 TLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYS 306

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M Q  R    + F+ G C  L+C+D+ +RG+DI +V++VIN+D P N++ Y+H    
Sbjct:   307 HARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 366

Query:   308 XXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                       I+L+N  +     +IE+ +G
Sbjct:   367 SGRFGHLGLAINLINWDDRFNLYKIEQELG 396


>DICTYBASE|DDB_G0293064 [details] [associations]
            symbol:DDB_G0293064 species:44689 "Dictyostelium
            discoideum" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
            RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
            EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
            InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
        Length = 573

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 106/304 (34%), Positives = 171/304 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G D++G+++TGSGKT +F LP ++ +L     Q   P     V++PTRELA QI+++ E
Sbjct:   175 SGSDMLGISKTGSGKTLSFILPAIEHILA-QPRQSYYPGPSVLVVAPTRELANQINQEAE 233

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
                  +++  A + GG     Q L L +RP IVV TPGR++D +  +   SL  + +LV+
Sbjct:   234 QYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFM-ESGDLSLKNISFLVV 292

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEADRL+   FE+ +D I N I   RQ   +SAT  KKV       ++ P++++  S   
Sbjct:   293 DEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQL 352

Query:   188 TVD-TLKQQYRFVPAKY-KDCYLVYILTEV-SA---SSTMVFTRTCDATRLLALMLRNLG 241
             T +  + Q+++ VP    K   L+  L E+ SA   + T++FT T      L   +++ G
Sbjct:   353 TANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNG 412

Query:   242 Q--RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299
                R   + G + Q++R   +  FK    +I++ TDVASRGLDI  +  VIN+ +P++ +
Sbjct:   413 DNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCE 472

Query:   300 DYIH 303
              Y+H
Sbjct:   473 TYVH 476


>SGD|S000002319 [details] [associations]
            symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
            decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
            GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
            RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
            SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
            STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
            GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
            EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
            GermOnline:YDL160C Uniprot:P39517
        Length = 506

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 99/329 (30%), Positives = 173/329 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  A+ G+GKT AF +P L+   ++      + A    ++ PTRELA+Q S+    
Sbjct:    83 GRDILARAKNGTGKTAAFVIPTLE---KVKPKLNKIQAL---IMVPTRELALQTSQVVRT 136

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    + C V  GG ++    L L +  HI+V TPGR++D L + K   L      ++D
Sbjct:   137 LGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMD 195

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD++L+ DF+  +++IL+ +P   Q+ LFSAT    VK+     L  P +I    +  T
Sbjct:   196 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-T 254

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
             +  + Q Y FV  + K   L  + +++  +  ++F  + +   LLA  + +LG       
Sbjct:   255 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 314

Query:   249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
               M Q +R    ++F+ G+   L+C+D+ +RG+DI +V++VIN+D P  ++ Y+H     
Sbjct:   315 ARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 374

Query:   309 XXXXXXXXXISLVNQYELEWYLQIEKLIG 337
                      I+L+N  +     +IE+ +G
Sbjct:   375 GRFGHLGLAINLINWNDRFNLYKIEQELG 403


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 113/301 (37%), Positives = 171/301 (56%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF----FACVLSPTRELAIQISE 64
             G+DLIG+A+TGSGKT ++ LP   A++ +  N + + A        VL+PTRELA+QI +
Sbjct:   136 GRDLIGIAETGSGKTLSYLLP---AIVHV--NAQPMLAHGDGPIVLVLAPTRELAVQIQQ 190

Query:    65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
             +    GS   ++   + GGV    Q   L K   IV+ATPGRL+D +  +   +L  + Y
Sbjct:   191 EASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID-MMESNNTNLRRVTY 249

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVK-IEAA 183
             LVLDEADR+L+  F+  + +I++ I   RQT  +SAT  K+V++L +  L NP K I  +
Sbjct:   250 LVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGS 309

Query:   184 SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQ 242
             S       ++Q    +    K   LV +L ++   S  +VF  T      +   LR  G 
Sbjct:   310 SDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGW 369

Query:   243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302
              A+ I G  SQ++R   L++F++G+  I+  TDVA+RGLD+  V  VINYD P + +DY+
Sbjct:   370 PALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429

Query:   303 H 303
             H
Sbjct:   430 H 430


>TAIR|locus:2076351 [details] [associations]
            symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
            GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
            EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
            IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
            RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
            UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
            STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
            EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
            KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
            OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
            Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
        Length = 612

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 116/309 (37%), Positives = 168/309 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALL--EIAENQRTVPAF--FACVLSPTRELAIQIS 63
             A +DL+  AQTGSGKT AF  PI+  ++  +  E  R   A   FA +LSPTRELA QI 
Sbjct:   187 AERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIH 246

Query:    64 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
             ++ +       ++  V  GG  + QQ   L +   I+VATPGRL D L   +  S+  ++
Sbjct:   247 DEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERAR-VSMQMIR 305

Query:   124 YLVLDEADRLLNDDFEKSLDEI---LNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVK 179
             +L LDEADR+L+  FE  + +I   +++ PR +RQT LFSAT   ++++L    + N + 
Sbjct:   306 FLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIF 365

Query:   180 IEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL-----TEVSASSTMVFTRTCDATRLLA 234
             +      S+ D + Q+  FV    K  +L+ +L     T+   S T+VF  T      L 
Sbjct:   366 LAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLE 425

Query:   235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 294
               L      A  I G  +Q +R  AL  FK G   IL+ TDVA+RGLDIP V  V+N+D+
Sbjct:   426 NWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDL 485

Query:   295 PTNSKDYIH 303
             P +  DY+H
Sbjct:   486 PNDIDDYVH 494


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 381 (139.2 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
 Identities = 96/264 (36%), Positives = 143/264 (54%)

Query:    48 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL 107
             +  +L PTREL +Q+ ++ ++    + ++   + GGV    Q   L K   I+VATPGRL
Sbjct:   429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488

Query:   108 MDHLTNTKGFSLGTLK--YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165
             +D L N  G ++  LK  Y+V+DEADRLL+  FEK L +I+  + + +Q    +AT  ++
Sbjct:   489 LDFLEN--G-NINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQ 545

Query:   166 VKKLQRA-CLKNPVKIEAASKYSTVDTLKQQYRFVPAKY--KDCYLVYILTEVSASSTMV 222
             V+KL    C  +PVKI+      T +   +Q   + +    K   L ++      +  ++
Sbjct:   546 VRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILI 605

Query:   223 FT---RTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
             F    R CD    L   LR     A+ I G   Q +R   LN +K   CNIL+ TDVASR
Sbjct:   606 FCDTKRNCDN---LCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASR 662

Query:   280 GLDIPSVDMVINYDIPTNSKDYIH 303
             GLDI ++ +VINYDIP   +DYIH
Sbjct:   663 GLDIKNISVVINYDIPNTIEDYIH 686

 Score = 93 (37.8 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALL---EIAEN 40
             +GKDLIG+A+TGSGKT AF LP    +L   EI +N
Sbjct:   323 SGKDLIGVAETGSGKTLAFVLPCFMHILKHKEIIQN 358


>FB|FBgn0004419 [details] [associations]
            symbol:me31B "maternal expression at 31B" species:7227
            "Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
            processing body assembly" evidence=IMP] [GO:0005875 "microtubule
            associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
            evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
            GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
            PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
            ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
            STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
            GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
            InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
            GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
            Uniprot:P23128
        Length = 459

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 105/331 (31%), Positives = 177/331 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +GKD++  A+ G+GKTGA+ +P+L+ +        T     A V+ PTRELA+Q S+   
Sbjct:    94 SGKDVLARAKNGTGKTGAYCIPVLEQI------DPTKDYIQALVMVPTRELALQTSQICI 147

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L   + +R  V  GG  +    L + ++  +++ATPGR++D L + K   +   + LVL
Sbjct:   148 ELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILD-LMDKKVADMSHCRILVL 206

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ DF+  LD ++  +P+  Q  LFSAT    VK      L+ P +I    +  
Sbjct:   207 DEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEINLMEEL- 265

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T+  + Q Y FV  + K   L  + +++  + +++F  +     LLA  +  LG     I
Sbjct:   266 TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYI 325

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M+Q+ R    + F+ G C  L+C+D+ +RG+D+ +V++VIN+D P  ++ Y+H    
Sbjct:   326 HAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGR 385

Query:   308 XXXXXXXXXXISLVNQYELEWYL-QIEKLIG 337
                       I+L+  YE  + L +IEK +G
Sbjct:   386 SGRFGHLGIAINLIT-YEDRFDLHRIEKELG 415


>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
            symbol:PFC0915w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
            ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
            GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
            Uniprot:O97285
        Length = 433

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 105/332 (31%), Positives = 176/332 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-ACVLSPTRELAIQISEQF 66
             AGK+++  A+ G+GKT AFA+P+L       E   T   F    +L PTRELA+Q S   
Sbjct:    96 AGKNILARAKNGTGKTAAFAIPLL-------EKCNTHKNFIQGLILVPTRELALQTSAMI 148

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
             + LG  + ++C V  GG  + +  + L    HI+  TPGR++D L N    +L     +V
Sbjct:   149 KELGKHMKVQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILD-LANKDVANLSGCHIMV 207

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY 186
             +DEAD+LL+ +F+  ++E++  +P+ +Q  ++SAT    VK+ +   L +  +I    + 
Sbjct:   208 MDEADKLLSPEFQPIVEELMKFLPKEKQILMYSATFPVTVKEFRAIYLSDAHEINLMDEL 267

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              T+  + Q Y FV  + K   L  +  ++  +  ++F  +     LLA  +  LG  +  
Sbjct:   268 -TLKGITQYYAFVKERQKVHCLNTLFAKLQINQAIIFCNSITRVELLAKKITELGYSSFY 326

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I   MSQ+ R    + F+ G C  L+ +D+ +RG+DI SV++VIN+D P NS+ Y+H   
Sbjct:   327 IHARMSQTHRNRVFHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIG 386

Query:   307 XXXXXXXXXXXISLVNQYELEWYL-QIEKLIG 337
                        I+L+  +E  + L +IE  +G
Sbjct:   387 RSGRYGHLGLAINLIT-FEDRFNLYKIEVELG 417


>TAIR|locus:2050715 [details] [associations]
            symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
            GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
            EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
            RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
            SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
            EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
            GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
            Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
        Length = 528

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 108/331 (32%), Positives = 173/331 (52%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G D++  A+ G+GKTGAF +P L+ +    EN        A +L PTRELA+Q S+  + 
Sbjct:   191 GSDILARAKNGTGKTGAFCIPTLEKI--DPENN----VIQAVILVPTRELALQTSQVCKE 244

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVL 127
             L   + +   V  GG  +    + L +  H++V TPGR++D L   KG   L     LV+
Sbjct:   245 LSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD-LAK-KGVCVLKDCAMLVM 302

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD+LL+ +F+ S++E++  +P  RQ  +FSAT    VK  +   LK P  I    +  
Sbjct:   303 DEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL- 361

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
             T+  + Q Y FV  + K   L  + +++  + +++F  + +   LLA  +  LG     I
Sbjct:   362 TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 421

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
                M Q  R    + F+ G C  L+CTD+ +RG+DI +V++VIN+D P  S+ Y+H    
Sbjct:   422 HAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 481

Query:   308 XXXXXXXXXXISLVNQYELEWYL-QIEKLIG 337
                       ++LV  YE  + + Q E+ +G
Sbjct:   482 SGRFGHLGLAVNLVT-YEDRFKMYQTEQELG 511


>CGD|CAL0004832 [details] [associations]
            symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
            ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
            KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
        Length = 672

 Score = 441 (160.3 bits), Expect = 3.0e-41, P = 3.0e-41
 Identities = 121/311 (38%), Positives = 169/311 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP----AFFA-------CVLSPTR 56
             AG+DL+  AQTGSGKTG F  P+L       +    VP    AF +        V++PTR
Sbjct:   222 AGRDLMACAQTGSGKTGGFLFPVLSE--SYMKGPAPVPESNGAFSSHKVYPTILVMAPTR 279

Query:    57 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG 116
             EL  QI E+ +       +R  V+ GG D+ QQ   + +   ++VATPGRL D L   K 
Sbjct:   280 ELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGK- 338

Query:   117 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNV--IPRM--RQTYLFSATMTKKVKKLQRA 172
              SL  ++YLVLDEADR+L+  FE  +  I+    +P +  RQT +FSAT  + ++ L R 
Sbjct:   339 VSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARD 398

Query:   173 CLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRL 232
              LK+ V +      ST + + Q+  +V    K   ++ +L+      T+VFT T      
Sbjct:   399 FLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMADN 458

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             LA  L + G  A  I G  SQ +R  AL  FK G   IL+ T VA+RGLDIP+V  VINY
Sbjct:   459 LADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINY 518

Query:   293 DIPTNSKDYIH 303
             D+P++  DY+H
Sbjct:   519 DLPSDIDDYVH 529


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 446 (162.1 bits), Expect = 3.1e-41, P = 3.1e-41
 Identities = 114/332 (34%), Positives = 171/332 (51%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +A+TGSGKT AF +P+ + L   A   +T     A +L+PTRELA+Q  +  + 
Sbjct:   115 GKDVVAMARTGSGKTAAFLVPLFEKLK--APQAQTGAR--ALILTPTRELALQTMKFTKE 170

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    LR A+++GG  M  Q  AL + P I++ TPGRLM H+       L +++Y+V D
Sbjct:   171 LGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFD 229

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EADRL    F + L EI+  +P  RQT LFSAT+ K + +  RA L  PV I        
Sbjct:   230 EADRLFEMGFAEQLQEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKL 289

Query:   189 VDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
              + LK  +  +    K   L+++L  V      T+VF  T      L  +L   G     
Sbjct:   290 SEQLKLSFFSLRLDDKPALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSC 349

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I   + Q+ R  ++ +F   +  +L+ TDVA+RG+DIP +D VINY+ P   K ++H   
Sbjct:   350 IYSALDQTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVG 409

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                         SLV   E+ +   +   +G+
Sbjct:   410 RVARAGRGGTAYSLVCPDEVPYLYDLHLFLGR 441


>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
            symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
            RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
            Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
            OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
        Length = 709

 Score = 388 (141.6 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 97/258 (37%), Positives = 145/258 (56%)

Query:    51 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDH 110
             VL+PTRELA+QI ++         +R  V+ GG D+ QQ   L +  H++VATPGRL+D 
Sbjct:   319 VLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDM 378

Query:   111 LTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKV 166
             +   K   L   KYLVLDEADR+L+  FE  +  I+    + P+  RQT +FSAT  K++
Sbjct:   379 MERGK-IGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEI 437

Query:   167 KKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTR 225
             + L R  L+  + +      ST + + Q+  +V    K  +L+ +L      S T+VF  
Sbjct:   438 QILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVE 497

Query:   226 TCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 285
             T      L   L   G     I G  SQ  R  AL++F++G C I++ T VA+RGLDI +
Sbjct:   498 TKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISN 557

Query:   286 VDMVINYDIPTNSKDYIH 303
             V  VIN+D+P++ ++Y+H
Sbjct:   558 VKHVINFDLPSDIEEYVH 575

 Score = 80 (33.2 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query:    10 KDLIGLAQTGSGKTGAFALPILQAL 34
             +DL+  AQTGSGKT AF LP+L  +
Sbjct:   261 RDLMACAQTGSGKTAAFLLPVLSQI 285


>CGD|CAL0004182 [details] [associations]
            symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
            STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
            KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            Uniprot:Q5AF95
        Length = 765

 Score = 444 (161.4 bits), Expect = 3.2e-41, P = 3.2e-41
 Identities = 110/302 (36%), Positives = 163/302 (53%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT-VPAFFACVLSPTRELAIQISEQFE 67
             G+DL+G A+TGSGKT AF +P++++L+    N+ T      A ++SPTRELA+QI E   
Sbjct:    85 GEDLMGTARTGSGKTLAFLIPVIESLIR---NKITEYDGLAALIVSPTRELAVQIFEVLT 141

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              +G   +    ++ GG D+  +   +  R +I+V TPGR+  HL    G     L+ LVL
Sbjct:   142 KIGKYNTFSAGLVTGGKDVQFEKERVS-RMNILVGTPGRISQHLNEAVGMETSNLQVLVL 200

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY- 186
             DEADR L+  F+K +D IL  +P  RQT LFSAT ++ V  L R  L NP KI  +S   
Sbjct:   201 DEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESVNDLARLSLTNPNKIGVSSDQE 260

Query:   187 --STVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--G 241
               +T ++L+Q Y  VP   K D    +I + +  S  +VF  +    +      R L  G
Sbjct:   261 VSATPESLEQYYVKVPLDEKLDVLWSFIKSHLK-SKILVFFSSSKQVQYTYETFRTLQPG 319

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
                + + G   Q+ RL    KF   +   L  TD+ +RGLD P++D V+  D P ++  Y
Sbjct:   320 ISLMKLYGRHKQTSRLETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATY 379

Query:   302 IH 303
             +H
Sbjct:   380 VH 381


>TAIR|locus:2119176 [details] [associations]
            symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
            IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
            ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
            EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
            GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
            PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
            Uniprot:Q9SZB4
        Length = 542

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 120/331 (36%), Positives = 173/331 (52%)

Query:     8 AGKDLIGLAQTGSGKTGAFALP-ILQALLEIAENQRTVPAF---FACVLSPTRELAIQ-- 61
             +G+D+IG+A TGSGKT  F LP I+ AL E  E    + A     A V+ P+RELA Q  
Sbjct:   133 SGRDMIGIAFTGSGKTLVFVLPMIILALQE--EIMMPIAAGEGPIALVICPSRELAKQTY 190

Query:    62 -ISEQFEA--LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
              + EQF A  +  G   LR  + +GGVDM  Q   + K  HIVVATPGRL D L   K  
Sbjct:   191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK-M 249

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
             SL   + L LDEADRL++  FE  +  + +     RQT LFSATM  K++    + L  P
Sbjct:   250 SLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKP 309

Query:   178 VKIEAA-SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             V +    +  + +D + Q+  +V  + K  YL+  L + +    +      D   +   +
Sbjct:   310 VTVNVGRAGAANLDVI-QEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYL 368

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G  A+ I G   Q  R  A++ FKAG+ ++L+ TDVAS+GLD P +  VINYD+P 
Sbjct:   369 LLK-GVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPG 427

Query:   297 NSKDYIHXXXXXXXXXXXXXXISLVNQYELE 327
               ++Y+H               + +N+ + E
Sbjct:   428 EIENYVHRIGRTGRCGKTGIATTFINKNQSE 458


>WB|WBGene00010260 [details] [associations]
            symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
            RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
            STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
            EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
            EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
            KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
            WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
            ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
        Length = 561

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 119/305 (39%), Positives = 168/305 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTV-PAFFACVLSPTRELAIQISEQF 66
             +G+D+I +A+TGSGKT AF LP L  + + A  QR   PA    VL PTRELA Q+ E  
Sbjct:   165 SGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVL--VLLPTRELAQQVQEVS 222

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
                   + L+   L GG     Q   L +   IVVATPGRL+D L N    ++    YLV
Sbjct:   223 IDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTT-NMKKCSYLV 281

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKL----QR-ACLKNPVKIE 181
             LDEADR+L+  FE  + +I+  I   RQT +FSAT  K+V+ L    Q+ A   N   +E
Sbjct:   282 LDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLE 341

Query:   182 AASKYS---TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238
              A+ ++    VD L++  +   AK  +  L +I+ +     T++F  T      L   +R
Sbjct:   342 LAANHNITQVVDILEEHAK--QAKLMEL-LNHIMNQKECK-TIIFVETKRKADELTRAMR 397

Query:   239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
               G   + I G  +Q +R   L +FKAG+  I++ TDVA+RGLD+  +  VINYD P NS
Sbjct:   398 RDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNS 457

Query:   299 KDYIH 303
             +DY+H
Sbjct:   458 EDYVH 462


>WB|WBGene00022378 [details] [associations]
            symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
            GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
            NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
            SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
            WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
            Uniprot:Q688Z4
        Length = 871

 Score = 445 (161.7 bits), Expect = 4.1e-41, P = 4.1e-41
 Identities = 114/334 (34%), Positives = 171/334 (51%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             GKD++ +++TGSGKT AF +P+LQ L      +R      A ++SPTRELA+Q  +  + 
Sbjct:    61 GKDVVAMSRTGSGKTAAFVIPMLQKL-----KRRDTTGIRALMVSPTRELALQTFKVVKE 115

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             LG    LRCA LVGG  + +Q   + + P I++ATPGRL+ H+       L  ++Y+V D
Sbjct:   116 LGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFD 174

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKY 186
             EADRL    F+  L E L  IP  RQT LFSAT+ K +    +A L +P  V+++   K 
Sbjct:   175 EADRLFEMGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKV 234

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASS--TMVFTRTCDATRLLALMLRNLGQRA 244
             S  D L   +       K   L+++   +   +  T+VF  T      +  +L   G   
Sbjct:   235 S--DKLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDC 292

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHX 304
               +   +  + R   + KF   + NIL+ TDVA+RG+DIP +D VIN   P  +K ++H 
Sbjct:   293 SFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHR 352

Query:   305 XXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 338
                          ISL+   EL +   +   +GK
Sbjct:   353 VGRVARAGRSGTAISLIANDELPYLTDLFMFLGK 386


>TAIR|locus:2160225 [details] [associations]
            symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
            ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
            PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
            KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
            OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
            Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
        Length = 739

 Score = 442 (160.7 bits), Expect = 4.5e-41, P = 4.5e-41
 Identities = 113/304 (37%), Positives = 166/304 (54%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF-FACVL-SPTRELAIQISEQF 66
             G+D++G A+TGSGKT AF +PIL+ L      +R  P     C++ SPTRELA Q     
Sbjct:   108 GRDILGAARTGSGKTLAFVIPILEKL----HRERWSPEDGVGCIIISPTRELAAQTFGVL 163

Query:    67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
               +G        +L+GG + +          +I+V  PGRL+ H+  T  F    L+ L+
Sbjct:   164 NKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILI 223

Query:   127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAAS 184
             LDEADR+L+  F+  LD I++ +P+ RQT LFSAT TKKVK L R  L++P  + + A +
Sbjct:   224 LDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEA 283

Query:   185 KYSTVDTLKQQYRFVPAKYK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
               +T  +L Q    VP + K D    +I T ++ S  +VF  T    + +      L + 
Sbjct:   284 VTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLN-SRILVFLSTKKQVKFVHEAFNKL-RP 341

Query:   244 AIPIS---GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP-SVDMVINYDIPTNSK 299
              IP+    G MSQ KR+G  ++F   + ++L CTDV +RGLD   +VD V+  D P +  
Sbjct:   342 GIPLKSLHGKMSQEKRMGVYSQFIERQ-SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVA 400

Query:   300 DYIH 303
              YIH
Sbjct:   401 SYIH 404


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 101/333 (30%), Positives = 187/333 (56%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++  A+ G+GK+GA+ +P+L+ + ++ ++  ++ A  A V+ PTRELA+Q+S+   
Sbjct:   133 SGRDILARAKNGTGKSGAYLIPLLERI-DLKKD--SIQA--AVVIVPTRELALQVSQICI 187

Query:    68 ALGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYL 125
              +   +  ++     GG ++    + L +  H+V+ATPGR++D +   KG + +G ++ +
Sbjct:   188 QVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIK--KGVAKVGQVQMI 245

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             VLDEAD+LL+ DF + ++EIL+ + + RQ  L+SAT    V+K   + L+ P +I    +
Sbjct:   246 VLDEADKLLSQDFVQMMEEILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE 305

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
               T+  + Q Y +V  + K   L  + + +  + +++F  +     LLA  +  LG    
Sbjct:   306 L-TLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF 364

Query:   246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXX 305
              I   M Q  R    + F+ G C  L+CTD+ +RG+DI +V++VIN+D P   + Y+H  
Sbjct:   365 YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI 424

Query:   306 XXXXXXXXXXXXISLVNQYELEWYLQ-IEKLIG 337
                         I+L+  Y+  + L+ IE+ +G
Sbjct:   425 GRSGRFGHLGLAINLIT-YDDRFNLKGIEEQLG 456


>UNIPROTKB|F8WAJ0 [details] [associations]
            symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
            IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
            Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
            Uniprot:F8WAJ0
        Length = 722

 Score = 291 (107.5 bits), Expect = 4.8e-41, Sum P(3) = 4.8e-41
 Identities = 69/181 (38%), Positives = 105/181 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +  +QTGSGKT A+ +P++Q+L  +    +     +A VL PTRELA+Q  +  + 
Sbjct:   139 GRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQK 198

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             L    + +   VL+GG     +   L K  +I+++TPGRL+DH+ +TK      L++LV 
Sbjct:   199 LLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVF 258

Query:   128 DEADRLLNDDFEKSLDEILNVIP---RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             DEADR+L+  FEK +  ILN +    + RQ  L SAT+T+ V +L    L +PV I    
Sbjct:   259 DEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLD 318

Query:   185 K 185
             K
Sbjct:   319 K 319

 Score = 133 (51.9 bits), Expect = 4.8e-41, Sum P(3) = 4.8e-41
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + G M Q +R     +F      +L+CTDVA+RGLD+P V  ++ Y+ P++  +YIH
Sbjct:   429 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIH 485

 Score = 67 (28.6 bits), Expect = 4.8e-41, Sum P(3) = 4.8e-41
 Identities = 27/103 (26%), Positives = 44/103 (42%)

Query:   162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK-DCYLVYILTEVSASST 220
             +  K K +Q  C   P   +    ++  ++LKQ    VP+K +  C   +IL +      
Sbjct:   324 LNPKDKAVQEVC--PPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEED 381

Query:   221 ---MVFTRTCDATRL-LALMLRNL-GQRAIPISGHM-SQSKRL 257
                +VF  +C+      +L L+ L      P SG + S S RL
Sbjct:   382 QKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRL 424


>UNIPROTKB|E1C2R8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
            development" evidence=IEA] [GO:0072358 "cardiovascular system
            development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
            Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
        Length = 496

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 113/300 (37%), Positives = 167/300 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++G+AQTGSGKT A+ LP +  +      +R        VL+PTRELA Q+ +  +
Sbjct:   126 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG-DGPICLVLAPTRELAQQVQQVAD 184

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    L+   + GG     Q   L +   I +ATPGRL+D L   K  +L    YLVL
Sbjct:   185 DYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT-NLRRCTYLVL 243

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KY 186
             DEADR+L+  FE  + +I++ I   RQT ++SAT  K+V++L    L++ V+I   + + 
Sbjct:   244 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLEL 303

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLGQR 243
             S    + Q         KD  L+ ++ E+ A   + T++F  T      L   +R  G  
Sbjct:   304 SANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWP 363

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ I G  SQ +R   LN+F++G+  ILI TDVASRGLD+  V  VINYD P +S+DY+H
Sbjct:   364 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 423


>MGI|MGI:1919297 [details] [associations]
            symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
            GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
            CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
            EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
            IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
            ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
            PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
            Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
            UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
            InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
            Genevestigator:Q810A7 Uniprot:Q810A7
        Length = 929

 Score = 444 (161.4 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + +     P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   465 GEANEDVTQIVEILHSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ASNLKQE 521

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581

Query:   301 YIH 303
             + H
Sbjct:   582 HTH 584


>UNIPROTKB|E1BJD2 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
            Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
        Length = 946

 Score = 444 (161.4 bits), Expect = 6.8e-41, P = 6.8e-41
 Identities = 111/300 (37%), Positives = 167/300 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++     
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   186 YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNLGQR 243
                 + + Q    + +  K  +L   L E ++S S ++F T+  +A  L A  L+  G  
Sbjct:   465 GEANEDVTQIVEILHSGSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQEGHN 523

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
                + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   + H
Sbjct:   524 LGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTH 583


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 107/302 (35%), Positives = 168/302 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D++G+A+TGSGKT ++ LP   A++ I       P       +L+PTRELA+QI  +
Sbjct:   176 SGRDVVGIAETGSGKTLSYCLP---AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAE 232

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
                 G    +R   + GGV    Q   L +   + +ATPGRL+D L   +  +L  + YL
Sbjct:   233 ISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT-NLRRVTYL 291

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
             VLDEADR+L+  FE  + +I++ I   RQT ++SAT  K+V++L    L N +++   S 
Sbjct:   292 VLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSM 351

Query:   186 YSTVDTLKQQYRFVPAKY--KDCYLVYI--LTEVSASSTMVFTRTCDATRLLALMLRNLG 241
               + +    Q   V +++  +D  + ++  + E   +  +VFT T      +   LR  G
Sbjct:   352 DLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDG 411

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
               A+ I G   Q +R   LN+FK G+  I++ TDVASRG+D+  +  VINYD P NS+DY
Sbjct:   412 WPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDY 471

Query:   302 IH 303
             +H
Sbjct:   472 VH 473


>CGD|CAL0004095 [details] [associations]
            symbol:TIF species:5476 "Candida albicans" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 105/328 (32%), Positives = 166/328 (50%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  AQ+G+GKT  F +  LQ    I EN++   A    +L+PTRELA+QI     A
Sbjct:    60 GRDVLAQAQSGTGKTATFTISALQ---RINENEKATQAL---ILAPTRELALQIKNVITA 113

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G  + +     +GG  M     A      IVV TPGR++D +   + F    +K  +LD
Sbjct:   114 IGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLD-MIERRYFKTDKVKMFILD 172

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +L+  F++ +  I  ++P   Q  L SATM + V ++    + NPV+I       T
Sbjct:   173 EADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELT 232

Query:   189 VDTLKQQYRFVPAK-YK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             ++ +KQ Y  V  + YK DC L  +   +S +  ++F  T      L   LR        
Sbjct:   233 LEGIKQFYINVELEDYKFDC-LCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSA 291

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I   + Q++R   + +F++G   ILI TD+ +RG+D+  V +VINYD+P N ++YIH   
Sbjct:   292 IHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 351

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEK 334
                        I+ V   ++    +IEK
Sbjct:   352 RGGRFGRKGVAINFVTDRDVGMMREIEK 379


>UNIPROTKB|P87206 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:237561 "Candida albicans SC5314" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
            EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 105/328 (32%), Positives = 166/328 (50%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D++  AQ+G+GKT  F +  LQ    I EN++   A    +L+PTRELA+QI     A
Sbjct:    60 GRDVLAQAQSGTGKTATFTISALQ---RINENEKATQAL---ILAPTRELALQIKNVITA 113

Query:    69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
             +G  + +     +GG  M     A      IVV TPGR++D +   + F    +K  +LD
Sbjct:   114 IGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLD-MIERRYFKTDKVKMFILD 172

Query:   129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
             EAD +L+  F++ +  I  ++P   Q  L SATM + V ++    + NPV+I       T
Sbjct:   173 EADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELT 232

Query:   189 VDTLKQQYRFVPAK-YK-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
             ++ +KQ Y  V  + YK DC L  +   +S +  ++F  T      L   LR        
Sbjct:   233 LEGIKQFYINVELEDYKFDC-LCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSA 291

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXX 306
             I   + Q++R   + +F++G   ILI TD+ +RG+D+  V +VINYD+P N ++YIH   
Sbjct:   292 IHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 351

Query:   307 XXXXXXXXXXXISLVNQYELEWYLQIEK 334
                        I+ V   ++    +IEK
Sbjct:   352 RGGRFGRKGVAINFVTDRDVGMMREIEK 379


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 111/322 (34%), Positives = 170/322 (52%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D++G+A TGSGKT ++ LP    ++ I       P       VL+PTRELA+QI  +
Sbjct:   149 SGRDMVGIAATGSGKTLSYCLP---GIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTE 205

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
                 G    +R   + GGV   QQ   L +   IV+ATPGRL+D L   K  +L  + YL
Sbjct:   206 CSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKT-NLKRVTYL 264

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS- 184
             VLDEADR+L+  FE  + +I++ I   RQT ++SAT  K+VK+L    L +P++++  S 
Sbjct:   265 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSL 324

Query:   185 KYSTVDTLKQQYRFVPA-KYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLG 241
             + S    + Q    V   + +D    Y+ T  + +   T++F  T      +   LR  G
Sbjct:   325 ELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDG 384

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
               A+ I G   Q +R   L +F+ G   I++ TDVA+RG+D+  ++ VINYD+P N +DY
Sbjct:   385 WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDY 444

Query:   302 IHXXXXXXXXXXXXXXISLVNQ 323
             +H              IS   +
Sbjct:   445 VHRIGRTGRAGATGTAISFFTE 466


>UNIPROTKB|I3LDV0 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
            Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
        Length = 667

 Score = 437 (158.9 bits), Expect = 8.1e-41, P = 8.1e-41
 Identities = 118/311 (37%), Positives = 171/311 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR---TVPAFFACVLSPTRE 57
             +DL+  AQTGSGKT AF LPIL         +AL  + EN R         + VL+PTRE
Sbjct:   219 RDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRE 278

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QI E+         +R  V+ GG D+ QQ   L +  H++VATPGRL+D +   K  
Sbjct:   279 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 337

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKVKKLQRAC 173
              L   KYLVLDEADR+L+  FE  +  I+    + P+ +R T +FSAT  K+++ L R  
Sbjct:   338 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 397

Query:   174 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRL 232
             L   + +      ST + + Q+  +V    K  +L+ +L      S T+VF  T      
Sbjct:   398 LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 457

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L + G     I G  SQ  R  AL++F++G+  IL+ T VA+RGLDI +V  VIN+
Sbjct:   458 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF 517

Query:   293 DIPTNSKDYIH 303
             D+P++ ++Y+H
Sbjct:   518 DLPSDIEEYVH 528


>UNIPROTKB|E2RFF1 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
            Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
        Length = 933

 Score = 443 (161.0 bits), Expect = 8.4e-41, P = 8.4e-41
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + +     P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   465 GEANEDVTQIVEILHSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQE 521

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581

Query:   301 YIH 303
             + H
Sbjct:   582 HTH 584


>UNIPROTKB|Q86XP3 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
            localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
            EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
            EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
            EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
            PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
            ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
            MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
            PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
            Ensembl:ENST00000389924 Ensembl:ENST00000457800
            Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
            KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
            HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
            MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
            InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
            NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
            Genevestigator:Q86XP3 Uniprot:Q86XP3
        Length = 938

 Score = 443 (161.0 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + +     P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   465 GEANEDVTQIVEILHSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQE 521

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581

Query:   301 YIH 303
             + H
Sbjct:   582 HTH 584


>UNIPROTKB|F1RSJ7 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
            Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
        Length = 941

 Score = 443 (161.0 bits), Expect = 8.6e-41, P = 8.6e-41
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + +     P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   465 GEANEDVTQIVEILHSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQE 521

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581

Query:   301 YIH 303
             + H
Sbjct:   582 HTH 584


>WB|WBGene00019245 [details] [associations]
            symbol:sacy-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
            OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
            ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
            EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
            UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
            NextBio:875413 Uniprot:Q9N5K1
        Length = 630

 Score = 434 (157.8 bits), Expect = 9.3e-41, P = 9.3e-41
 Identities = 108/307 (35%), Positives = 166/307 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF-----FACVLSPTRELAIQI 62
             +G+D+IG+A TGSGKT  F LP++   LE    +  +P       F  ++ P+RELA QI
Sbjct:   226 SGRDMIGIASTGSGKTMTFVLPLVMFCLE---QEMKLPFMRSEGPFGLIIVPSRELARQI 282

Query:    63 S----EQFEALG-SGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG 116
                  E F+ALG +G+  +R  + +GGV + +Q   +    HIVVATPGRL D LT  K 
Sbjct:   283 FDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTK-KI 341

Query:   117 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN 176
              +L   +YLVLDEADR+L+  FE  +  I       RQT LFSATM +K++   ++ L  
Sbjct:   342 INLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVK 401

Query:   177 PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
             P+ +      +    + Q+  FV ++ K   ++  L + S    +   +  D   +   +
Sbjct:   402 PIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYL 461

Query:   237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
             L   G     I G   QS R   +  F+  E ++L+ TDVAS+GLD   ++ VIN+D+P 
Sbjct:   462 LVK-GVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPE 520

Query:   297 NSKDYIH 303
             + ++Y+H
Sbjct:   521 DIENYVH 527


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 109/302 (36%), Positives = 166/302 (54%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D++G++ TGSGKT ++ LP   A++ I       P       VL+PTRELA+QI ++
Sbjct:   158 SGRDMVGISATGSGKTLSYCLP---AIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
                 G    +R   + GGV    Q   L +   I +ATPGRL+D L + K  +L  + YL
Sbjct:   215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKT-NLRRVTYL 273

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS- 184
             VLDEADR+L+  FE  + +I++ I   RQT +FSAT  K+V++L R  L + +++   S 
Sbjct:   274 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSL 333

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLG 241
               +    +KQ    V    K   L   + EV     +  ++FT T      +   LR  G
Sbjct:   334 DLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDG 393

Query:   242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
               A+ I G  +Q +R   LN+F+ G+  I++ TDVASRG+D+  +  V NYD P N++DY
Sbjct:   394 WPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453

Query:   302 IH 303
             +H
Sbjct:   454 VH 455


>UNIPROTKB|A7E307 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
            GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
            IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
            Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
            InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
        Length = 650

 Score = 435 (158.2 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 112/300 (37%), Positives = 167/300 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++G+AQTGSGKT A+ LP +  +      +R        VL+PTRELA Q+ +  +
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG-DGPICLVLAPTRELAQQVQQVAD 186

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    L+   + GG     Q   L +   I +ATPGRL+D L + K  +L    YLVL
Sbjct:   187 DYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVL 245

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KY 186
             DEADR+L+  FE  + +I++ I   RQT ++SAT  K+V++L    L++  +I   + + 
Sbjct:   246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLGQR 243
             S    + Q         KD  L+ ++ E+ A   + T++F  T      L   +R  G  
Sbjct:   306 SANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWP 365

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ I G  SQ +R   LN+F++G+  ILI TDVASRGLD+  V  VINYD P +S+DY+H
Sbjct:   366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425


>UNIPROTKB|E2RJ60 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
            Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
        Length = 650

 Score = 435 (158.2 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 112/300 (37%), Positives = 167/300 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++G+AQTGSGKT A+ LP +  +      +R        VL+PTRELA Q+ +  +
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG-DGPICLVLAPTRELAQQVQQVAD 186

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    L+   + GG     Q   L +   I +ATPGRL+D L + K  +L    YLVL
Sbjct:   187 DYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVL 245

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KY 186
             DEADR+L+  FE  + +I++ I   RQT ++SAT  K+V++L    L++  +I   + + 
Sbjct:   246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLGQR 243
             S    + Q         KD  L+ ++ E+ A   + T++F  T      L   +R  G  
Sbjct:   306 SANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWP 365

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ I G  SQ +R   LN+F++G+  ILI TDVASRGLD+  V  VINYD P +S+DY+H
Sbjct:   366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425


>MGI|MGI:1914290 [details] [associations]
            symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0072358 "cardiovascular system
            development" evidence=IMP] [GO:2001014 "regulation of skeletal
            muscle cell differentiation" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
            GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
            ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
            EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
            RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
            UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
            IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
            REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
            GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
            InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
            CleanEx:MM_DDX17 Genevestigator:Q501J6
            GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
        Length = 650

 Score = 435 (158.2 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 112/300 (37%), Positives = 167/300 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             +G+D++G+AQTGSGKT A+ LP +  +      +R        VL+PTRELA Q+ +  +
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG-DGPICLVLAPTRELAQQVQQVAD 186

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
               G    L+   + GG     Q   L +   I +ATPGRL+D L + K  +L    YLVL
Sbjct:   187 DYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVL 245

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KY 186
             DEADR+L+  FE  + +I++ I   RQT ++SAT  K+V++L    L++  +I   + + 
Sbjct:   246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query:   187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLGQR 243
             S    + Q         KD  L+ ++ E+ A   + T++F  T      L   +R  G  
Sbjct:   306 SANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWP 365

Query:   244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             A+ I G  SQ +R   LN+F++G+  ILI TDVASRGLD+  V  VINYD P +S+DY+H
Sbjct:   366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425


>UNIPROTKB|Q5R7D1 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
            localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
            RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
            GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
        Length = 942

 Score = 442 (160.7 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   289 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAE 345

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   346 GKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYL 404

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   405 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 464

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + +     P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   465 GEANEDVTQIVEILHSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQE 521

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
             G     + G M QS+R   ++ FK  +  +L+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581

Query:   301 YIH 303
             + H
Sbjct:   582 HTH 584


>UNIPROTKB|B4DXX7 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
            UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
            IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
            UCSC:uc011nar.1 Uniprot:B4DXX7
        Length = 657

 Score = 435 (158.2 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 119/311 (38%), Positives = 172/311 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR---TVPAFFACVLSPTRE 57
             +DL+  AQTGSGKT AF LPIL         +AL  + EN R         + VL+PTRE
Sbjct:   213 RDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRE 272

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QI E+         +R  V+ GG D+ QQ   L +  H++VATPGRL+D +   K  
Sbjct:   273 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 331

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKVKKLQRAC 173
              L   KYLVLDEADR+L+  FE  +  I+    + P+ +R T +FSAT  K+++ L R  
Sbjct:   332 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 391

Query:   174 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRL 232
             L   + +      ST + + Q+  +V    K  +L+ IL    + S T+VF  T      
Sbjct:   392 LDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADS 451

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L + G     I G  SQ  R  AL++F++G+  IL+ T VA+RGLDI +V  VIN+
Sbjct:   452 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINF 511

Query:   293 DIPTNSKDYIH 303
             D+P++ ++Y+H
Sbjct:   512 DLPSDIEEYVH 522


>UNIPROTKB|F1P0H1 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
            Uniprot:F1P0H1
        Length = 703

 Score = 437 (158.9 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 112/303 (36%), Positives = 169/303 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQ 65
             +G+D+IG+A+TGSGKT AF  P+L   + I + +   P     A ++ PTREL  QI  +
Sbjct:   284 SGRDMIGIAKTGSGKTAAFIWPML---IHIMDQKELEPGDGPIAVIVCPTRELCQQIHSE 340

Query:    66 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125
              +  G   +LR   + GG  M +Q  AL +   IVV TPGRL+DH+   K  +L  + YL
Sbjct:   341 CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVTYL 399

Query:   126 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI---EA 182
             V DEADR+ +  FE  +  I + +   RQT LFSAT  KK++KL R  L +P+++   + 
Sbjct:   400 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 459

Query:   183 ASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS-STMVF-TRTCDATRLLALMLRNL 240
                   V  + + +   P+K+   +L   L E ++S S ++F T+  +A  L A  L+  
Sbjct:   460 GEANEDVTQIVEIFPSGPSKWN--WLTRRLVEFTSSGSVLLFVTKKANAEEL-ANNLKQE 516

Query:   241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
                   + G M QS+R   +++FK     IL+ TDVA+RGLDIPS+  VINYD+  +   
Sbjct:   517 DHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDT 576

Query:   301 YIH 303
             + H
Sbjct:   577 HTH 579


>UNIPROTKB|P21693 [details] [associations]
            symbol:dbpA species:83333 "Escherichia coli K-12"
            [GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
            activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
            [GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
            evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
            "ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
            GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
            ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
            EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
            GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
            PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
            HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
            BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
            BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
            GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
        Length = 457

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 109/299 (36%), Positives = 167/299 (55%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQF 66
             AGKD+   A+TGSGKT AF L +LQ +   + + Q       A VL PTRELA Q++ + 
Sbjct:    39 AGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-------ALVLCPTRELADQVAGEL 91

Query:    67 EALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKY 124
               L   + + +   L GG     Q  +L   PHI+VATPGRL+DHL   KG  SL  L  
Sbjct:    92 RRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ--KGTVSLDALNT 149

Query:   125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             LV+DEADR+L+  F  ++D+++   P  RQT LFSAT  + +  +     ++P+ IE  S
Sbjct:   150 LVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDS 209

Query:   185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
                 +  ++QQ+    +K K   L  +L+    SS +VF  T    + +   L  +GQ A
Sbjct:   210 T-DALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSA 268

Query:   245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + + G + Q  R   L +F  G   +L+ TDVA+RGLDI S+++V+N+++  + + ++H
Sbjct:   269 LSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH 327


>UNIPROTKB|O15523 [details] [associations]
            symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
            HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
            EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
            RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
            SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
            PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
            Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
            KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
            HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
            InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
            NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
            Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
        Length = 660

 Score = 435 (158.2 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 119/311 (38%), Positives = 172/311 (55%)

Query:    10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR---TVPAFFACVLSPTRE 57
             +DL+  AQTGSGKT AF LPIL         +AL  + EN R         + VL+PTRE
Sbjct:   216 RDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRE 275

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QI E+         +R  V+ GG D+ QQ   L +  H++VATPGRL+D +   K  
Sbjct:   276 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 334

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKVKKLQRAC 173
              L   KYLVLDEADR+L+  FE  +  I+    + P+ +R T +FSAT  K+++ L R  
Sbjct:   335 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 394

Query:   174 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRL 232
             L   + +      ST + + Q+  +V    K  +L+ IL    + S T+VF  T      
Sbjct:   395 LDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADS 454

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L + G     I G  SQ  R  AL++F++G+  IL+ T VA+RGLDI +V  VIN+
Sbjct:   455 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINF 514

Query:   293 DIPTNSKDYIH 303
             D+P++ ++Y+H
Sbjct:   515 DLPSDIEEYVH 525


>UNIPROTKB|G5E631 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
            OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
            PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
            KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
        Length = 661

 Score = 435 (158.2 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 118/311 (37%), Positives = 171/311 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR---TVPAFFACVLSPTRE 57
             +DL+  AQTGSGKT AF LPIL         +AL  + EN R         + VL+PTRE
Sbjct:   217 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 276

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QI E+         +R  V+ GG D+ QQ   L +  H++VATPGRL+D +   K  
Sbjct:   277 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 335

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKVKKLQRAC 173
              L   KYLVLDEADR+L+  FE  +  I+    + P+ +R T +FSAT  K+++ L R  
Sbjct:   336 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 395

Query:   174 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRL 232
             L   + +      ST + + Q+  +V    K  +L+ +L      S T+VF  T      
Sbjct:   396 LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 455

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L + G     I G  SQ  R  AL++F++G+  IL+ T VA+RGLDI +V  VIN+
Sbjct:   456 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF 515

Query:   293 DIPTNSKDYIH 303
             D+P++ ++Y+H
Sbjct:   516 DLPSDIEEYVH 526


>UNIPROTKB|F1RX16 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
            EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
        Length = 661

 Score = 435 (158.2 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 118/311 (37%), Positives = 171/311 (54%)

Query:    10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR---TVPAFFACVLSPTRE 57
             +DL+  AQTGSGKT AF LPIL         +AL  + EN R         + VL+PTRE
Sbjct:   218 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 277

Query:    58 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF 117
             LA+QI E+         +R  V+ GG D+ QQ   L +  H++VATPGRL+D +   K  
Sbjct:   278 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 336

Query:   118 SLGTLKYLVLDEADRLLNDDFEKSLDEILN---VIPR-MRQTYLFSATMTKKVKKLQRAC 173
              L   KYLVLDEADR+L+  FE  +  I+    + P+ +R T +FSAT  K+++ L R  
Sbjct:   337 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 396

Query:   174 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRL 232
             L   + +      ST + + Q+  +V    K  +L+ +L      S T+VF  T      
Sbjct:   397 LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 456

Query:   233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292
             L   L + G     I G  SQ  R  AL++F++G+  IL+ T VA+RGLDI +V  VIN+
Sbjct:   457 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF 516

Query:   293 DIPTNSKDYIH 303
             D+P++ ++Y+H
Sbjct:   517 DLPSDIEEYVH 527


>TIGR_CMR|SPO_3833 [details] [associations]
            symbol:SPO_3833 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            KO:K05592 InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_169021.1
            ProteinModelPortal:Q5LLT8 GeneID:3196362 KEGG:sil:SPO3833
            PATRIC:23381169 HOGENOM:HOG000268794 OMA:MQHRSGR Uniprot:Q5LLT8
        Length = 709

 Score = 437 (158.9 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 103/296 (34%), Positives = 158/296 (53%)

Query:     8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
             A  DL+  A+TGSGKT  F L I   LL  AE      A  A +++PTRELA+Q+S +  
Sbjct:    57 ASADLLVSARTGSGKTVGFGLAIAPTLLGEAETLGPPAAPLALIVAPTRELALQVSRELT 116

Query:    68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
              L +    R A  +GG+D   +   L +  HIVV TPGRL DH+T      L  ++ +VL
Sbjct:   117 WLFAKAGGRIATCIGGMDARTERRTLERGAHIVVGTPGRLRDHITRG-ALDLADIRAVVL 175

Query:   128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
             DEAD +L+  F + L+ +L   P  R+T LFSAT++  + +L +   +   +I       
Sbjct:   176 DEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVSPAIAELAKTYQRQAARISTLGGER 235

Query:   188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
                 +  Q   V     +  ++ +L    A + +VF  T  A   L   L N G   + +
Sbjct:   236 QHSDISYQAVQVSGGDGEHAIINLLRFHDAPTAIVFANTRAAVARLTARLANRGFAVVSL 295

Query:   248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             SG +SQ +R  AL   + G   + + TDVA+RG+D+P++D+VI+ D+PTN++  +H
Sbjct:   296 SGELSQDERSHALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNTEGLLH 351


>UNIPROTKB|Q9H8H2 [details] [associations]
            symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
            EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
            EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
            EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
            IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
            UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
            IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
            PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
            Ensembl:ENST00000372153 Ensembl:ENST00000372155
            Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
            UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
            HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
            HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
            PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
            Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
            GermOnline:ENSG00000125485 Uniprot:Q9H8H2
        Length = 851

 Score = 291 (107.5 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
 Identities = 69/181 (38%), Positives = 105/181 (58%)

Query:     9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
             G+D +  +QTGSGKT A+ +P++Q+L  +    +     +A VL PTRELA+Q  +  + 
Sbjct:   268 GRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQK 327

Query:    69 LGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
             L    + +   VL+GG     +   L K  +I+++TPGRL+DH+ +TK      L++LV 
Sbjct:   328 LLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVF 387

Query:   128 DEADRLLNDDFEKSLDEILNVIP---RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
             DEADR+L+  FEK +  ILN +    + RQ  L SAT+T+ V +L    L +PV I    
Sbjct:   388 DEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLD 447

Query:   185 K 185
             K
Sbjct:   448 K 448

 Score = 133 (51.9 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query:   247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
             + G M Q +R     +F      +L+CTDVA+RGLD+P V  ++ Y+ P++  +YIH
Sbjct:   558 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIH 614

 Score = 67 (28.6 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
 Identities = 27/103 (26%), Positives = 44/103 (42%)

Query:   162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK-DCYLVYILTEVSASST 220
             +  K K +Q  C   P   +    ++  ++LKQ    VP+K +  C   +IL +      
Sbjct:   453 LNPKDKAVQEVC--PPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEED 510

Query:   221 ---MVFTRTCDATRL-LALMLRNL-GQRAIPISGHM-SQSKRL 257
                +VF  +C+      +L L+ L      P SG + S S RL
Sbjct:   511 QKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRL 553

WARNING:  HSPs involving 624 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      401       349   0.00099  116 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  874
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  206 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.67u 0.15s 28.82t   Elapsed:  00:00:02
  Total cpu time:  28.72u 0.16s 28.88t   Elapsed:  00:00:02
  Start:  Mon May 20 21:17:44 2013   End:  Mon May 20 21:17:46 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	3.5e-139
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	9.0e-109
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	9.0e-109
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-107
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.7e-107
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	2.7e-107
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	1.5e-106
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	8.3e-106
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	7.5e-105
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Sus scrofa	2.9e-103
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.3e-101
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	3.8e-94
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	1.4e-85
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	8.5e-81
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	8.5e-81
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	7.3e-75
BLAST match view associations BLAST with RH36 RH36 RH36 RNA helicase 36	protein from Arabidopsis thaliana	9.9e-71
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Probable ATP-dependent RNA helicase DDX49	protein from Homo sapiens	7.2e-68
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	1.2e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	1.2e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Sus scrofa	1.9e-67
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-67
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene from Rattus norvegicus	4.0e-67
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein from Mus musculus	1.1e-66
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene_product from Danio rerio	1.1e-64
BLAST match view associations BLAST with H20J04.4 H20J04.4 H20J04.4	gene from Caenorhabditis elegans	7.6e-64
BLAST match view associations BLAST with DBP8 DBP8 DBP8	gene_product from Candida albicans	1.0e-61
BLAST match view associations BLAST with Dbp45A Dbp45A Dbp45A DEAD box protein 45A	protein from Drosophila melanogaster	5.1e-58
BLAST match view associations BLAST with DBP8 DBP8 DBP8 ATPase, putative RNA helicase	gene from Saccharomyces cerevisiae	2.0e-56
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	6.1e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	9.9e-55
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	1.3e-54
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	4.3e-54
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	5.5e-54
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	2.2e-53
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	8.2e-53
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	1.7e-52
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	1.7e-52
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.7e-52
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	1.7e-52
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	3.5e-52
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.4e-52
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	4.4e-52
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	9.2e-52
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	1.2e-51
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	1.2e-51
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	3.1e-51
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	5.1e-51
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	5.1e-51
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	8.3e-51
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	1.3e-50
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.7e-50
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.7e-50
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	2.1e-50
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	2.8e-50
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	3.0e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	4.6e-50
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	4.6e-50
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.6e-50
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	5.8e-50
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	5.8e-50
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.4e-50
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	7.4e-50
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	7.4e-50
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.4e-50
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	9.5e-50
BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	1.7e-49
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	2.5e-49
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	2.5e-49
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	3.2e-49
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	3.2e-49
BLAST match view associations BLAST with SO_1136 SO_1136 SO_1136 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	4.1e-49
BLAST match view associations BLAST with SO_1136 SO_1136 SO_1136 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.1e-49
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-49
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-49
BLAST match view associations BLAST with orf19.5991 orf19.5991 orf19.5991	gene_product from Candida albicans	8.8e-49
BLAST match view associations BLAST with pit pit pit pitchoune	protein from Drosophila melanogaster	1.1e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1	gene_product from Candida albicans	2.3e-48
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A	protein from Pseudomonas protegens Pf-5	2.3e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase HAS1	protein from Candida albicans SC5314	2.3e-48
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Canis lupus familiaris	7.7e-48
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene from Rattus norvegicus	7.7e-48
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	7.7e-48