BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015759
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 145/176 (82%), Gaps = 6/176 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G+D+IGLA+TGSGKTGAFALPIL ALLE + FA VL+PTRELA QISEQFEA
Sbjct: 80 GRDIIGLAETGSGKTGAFALPILNALLETPQR------LFALVLTPTRELAFQISEQFEA 133
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
LGS I ++ AV+VGG+D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L LKYLV+D
Sbjct: 134 LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
EADR+LN DFE +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK +S
Sbjct: 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 172/313 (54%), Gaps = 22/313 (7%)
Query: 10 KDLIGLAQTGSGKTGAFALPIL---------QALLEIAENQR-----TVPAFFACVLSPT 55
+DL+ AQTGSGKT AF LPIL +AL + EN R P + VL+PT
Sbjct: 53 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYP--ISLVLAPT 110
Query: 56 RELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK 115
RELA+QI E+ +R V+ GG D+ QQ L + H++VATPGRL+D + K
Sbjct: 111 RELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170
Query: 116 GFSLGTLKYLVLDEADRLLNDDFEKSLDEIL--NVIPR--MRQTYLFSATMTKKVKKLQR 171
L KYLVLDEADR+L+ FE + I+ + +P +R T +FSAT K+++ L R
Sbjct: 171 -IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR 229
Query: 172 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDAT 230
L + + ST + + Q+ +V K +L+ +L S T+VF T
Sbjct: 230 DFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGA 289
Query: 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 290
L L + G I G SQ R AL++F++G+ IL+ T VA+RGLDI +V VI
Sbjct: 290 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 349
Query: 291 NYDIPTNSKDYIH 303
N+D+P++ ++Y+H
Sbjct: 350 NFDLPSDIEEYVH 362
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 182/338 (53%), Gaps = 30/338 (8%)
Query: 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 64
F + +++ A+TGSGKT +FA+P+++ + EN A +L+PTRELAIQ+++
Sbjct: 40 FLNDEYNIVAQARTGSGKTASFAIPLIEL---VNENN----GIEAIILTPTRELAIQVAD 92
Query: 65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
+ E+L +L+ A + GG + Q AL K +IVV TPGR++DH+ N +L +KY
Sbjct: 93 EIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHI-NRGTLNLKNVKY 150
Query: 125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN----PVKI 180
+LDEAD LN F K +++ILN + ++ LFSAT +++ L + + KI
Sbjct: 151 FILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAKI 210
Query: 181 EAASKYSTVDTLKQQYRFVPA----KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236
A + S V+ + + RF K K+ Y +VF +T T+ LA
Sbjct: 211 NANIEQSYVE-VNENERFEALCRLLKNKEFY------------GLVFCKTKRDTKELASX 257
Query: 237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
LR++G +A I G +SQS+R + FK + ILI TDV SRG+D+ ++ VINY +P
Sbjct: 258 LRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQ 317
Query: 297 NSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEK 334
N + Y H IS++N+ E + IE+
Sbjct: 318 NPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 173/330 (52%), Gaps = 8/330 (2%)
Query: 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D++ A+ G+GKT AF +P L+ + + + A ++ PTRELA+Q S+
Sbjct: 57 TGRDILARAKNGTGKTAAFVIPTLEKV------KPKLNKIQALIMVPTRELALQTSQVVR 110
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
LG + C V GG ++ L L + HI+V TPGR++D L + K L ++
Sbjct: 111 TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD-LASRKVADLSDCSLFIM 169
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD++L+ DF+ +++IL+ +P Q+ LFSAT VK+ L P +I +
Sbjct: 170 DEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL- 228
Query: 188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
T+ + Q Y FV + K L + +++ + ++F + + LLA + +LG
Sbjct: 229 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYS 288
Query: 248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
M Q +R ++F+ G+ L+C+D+ +RG+DI +V++VIN+D P ++ Y+H
Sbjct: 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 348
Query: 308 XXXXXXXXXXISLVNQYELEWYLQIEKLIG 337
I+L+N + +IE+ +G
Sbjct: 349 SGRFGHLGLAINLINWNDRFNLYKIEQELG 378
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 159/300 (53%), Gaps = 9/300 (3%)
Query: 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQF 66
+G+DL+ AQTGSGKT AF LPIL LLE E + P ++SPTRELAIQI +
Sbjct: 92 SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ--VVIVSPTRELAIQIFNEA 149
Query: 67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
L+ ++ GG Q + + H+V+ATPGRL+D + T + +++V
Sbjct: 150 RKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVV 208
Query: 127 LDEADRLLNDDFEKSLDEILNVIPRMR---QTYLFSATMTKKVKKLQRACLKNPVKIEAA 183
LDEADR+L+ F + + I+ + MR QT +FSAT ++++++ LKN V +
Sbjct: 209 LDEADRMLDMGFSEDMRRIMTHV-TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267
Query: 184 SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
+KQ V K L+ IL+E A T+VF T LA L
Sbjct: 268 IVGGACSDVKQTIYEVNKYAKRSKLIEILSE-QADGTIVFVETKRGADFLASFLSEKEFP 326
Query: 244 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
I G QS+R AL FK G +LI T VASRGLDI ++ VINYD+P+ DY+H
Sbjct: 327 TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+QI +
Sbjct: 53 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLL 105
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++C +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 106 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 164
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ ++ ++ + +P++I
Sbjct: 165 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 224
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 225 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 284
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 285 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 341
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+QI +
Sbjct: 75 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLL 127
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++C +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 186
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ ++ ++ + +P++I
Sbjct: 187 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 246
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 247 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 306
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 307 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+QI +
Sbjct: 74 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLL 126
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++C +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 127 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 185
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ ++ ++ + +P++I
Sbjct: 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 245
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 246 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 305
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 306 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 362
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+QI +
Sbjct: 75 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLL 127
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++C +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 128 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 186
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ ++ ++ + +P++I
Sbjct: 187 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 246
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 247 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 306
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 307 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+Q+ +
Sbjct: 38 GRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQ-------ALILAPTRELAVQVQKGLL 90
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++C +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 91 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 149
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ ++ ++ + +P++I
Sbjct: 150 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 209
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 210 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 269
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 270 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 162/297 (54%), Gaps = 10/297 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67
G+D+I +Q+G+GKT F++ +LQ L +++ E Q A +L+PTRELA+Q+ +
Sbjct: 38 GRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQ-------ALILAPTRELAVQVQKGLL 90
Query: 68 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
ALG ++++ +GG ++ + L H+V TPGR+ D + + +K LVL
Sbjct: 91 ALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVL 149
Query: 128 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 187
DEAD +LN F++ + ++ +P Q L SAT+ +V ++ + +P++I
Sbjct: 150 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDEL 209
Query: 188 TVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246
T++ +KQ + V ++K L + ++ + ++F T L +R
Sbjct: 210 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 269
Query: 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ G M Q +R + +F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 270 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 168/328 (51%), Gaps = 9/328 (2%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ AQ+G+GKTG F++ LQ + +V A A +L+PTRELA+QI + A
Sbjct: 59 GHDVLAQAQSGTGKTGTFSIAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMA 112
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
L + ++ +GG ++ L + IVV TPGR+ D++ + F +K +LD
Sbjct: 113 LAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILD 170
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
EAD +L+ F++ + +I ++P Q L SATM V ++ ++NPV+I T
Sbjct: 171 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT 230
Query: 189 VDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
++ +KQ Y V + YK L + +S + ++F T L LRN I
Sbjct: 231 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 290
Query: 248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
+ Q +R + +F++G ILI TD+ +RG+D+ V +VINYD+P N ++YIH
Sbjct: 291 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
Query: 308 XXXXXXXXXXISLVNQYELEWYLQIEKL 335
I+ V ++ ++EK
Sbjct: 351 GGRFGRKGVAINFVTNEDVGAMRELEKF 378
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 165/303 (54%), Gaps = 15/303 (4%)
Query: 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 65
C G D+I AQ+G+GKT FA+ ILQ + + + A A VL+PTRELA QI +
Sbjct: 48 CIKGYDVIAQAQSGTGKTATFAISILQQI------ELDLKATQALVLAPTRELAQQIQKV 101
Query: 66 FEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
ALG + C +GG ++ + L + PHI+V TPGR+ D L N + S +K
Sbjct: 102 VMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKM 160
Query: 125 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184
VLDEAD +L+ F+ + +I + Q L SATM V ++ + +++P++I
Sbjct: 161 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 220
Query: 185 KYSTVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR 243
+ T++ ++Q Y V ++K L + ++ + ++F T R + + + R
Sbjct: 221 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINT---RRKVDWLTEKMHAR 277
Query: 244 AIPIS---GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKD 300
+S G M Q +R + +F++G +LI TD+ +RG+D+ V +VINYD+PTN ++
Sbjct: 278 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 337
Query: 301 YIH 303
YIH
Sbjct: 338 YIH 340
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 166/304 (54%), Gaps = 17/304 (5%)
Query: 6 CDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISE 64
C G D+I AQ+G+GKT FA+ ILQ + L++ Q A VL+PTRELA QI +
Sbjct: 74 CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ-------ALVLAPTRELAQQIQK 126
Query: 65 QFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
ALG + C +GG ++ + L + PHI+V TPGR+ D L N + S +K
Sbjct: 127 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIK 185
Query: 124 YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 183
VLDEAD +L+ F+ + +I + Q L SATM V ++ + +++P++I
Sbjct: 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 245
Query: 184 SKYSTVDTLKQQYRFVP-AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 242
+ T++ ++Q Y V ++K L + ++ + ++F T R + + +
Sbjct: 246 KEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINT---RRKVDWLTEKMHA 302
Query: 243 RAIPIS---GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299
R +S G M Q +R + +F++G +LI TD+ +RG+D+ V +VINYD+PTN +
Sbjct: 303 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 362
Query: 300 DYIH 303
+YIH
Sbjct: 363 NYIH 366
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 162/328 (49%), Gaps = 9/328 (2%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ AQ+G+GKTG F++ LQ + +V A A L+PTRELA+QI + A
Sbjct: 58 GHDVLAQAQSGTGKTGTFSIAALQRI------DTSVKAPQALXLAPTRELALQIQKVVXA 111
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
L ++ +GG ++ L + IVV TPGR+ D++ + F +K +LD
Sbjct: 112 LAFHXDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKXFILD 169
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
EAD L+ F++ + +I ++P Q L SAT V ++ +NPV+I T
Sbjct: 170 EADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELT 229
Query: 189 VDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
++ +KQ Y V + YK L + +S + ++F T L LRN I
Sbjct: 230 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 289
Query: 248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXX 307
+ Q +R +F++G ILI TD+ +RG+D+ V +VINYD+P N ++YIH
Sbjct: 290 YSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 349
Query: 308 XXXXXXXXXXISLVNQYELEWYLQIEKL 335
I+ V ++ ++EK
Sbjct: 350 GGRFGRKGVAINFVTNEDVGAXRELEKF 377
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 163/299 (54%), Gaps = 11/299 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ A++G GKT F L LQ L E Q +V V+ TRELA QIS+++E
Sbjct: 44 GMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSV-----LVMCHTRELAFQISKEYER 97
Query: 69 LGSGI-SLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ +++ AV GG+ + + L K PHIVV TPGR++ L K +L +K+ +
Sbjct: 98 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFI 156
Query: 127 LDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
LDEAD++L D + + EI + P +Q +FSAT++K+++ + R +++P++I +
Sbjct: 157 LDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 216
Query: 186 YS-TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
T+ L+Q Y + K+ L +L + + ++F ++ LA +L A
Sbjct: 217 TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 276
Query: 245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
I I M Q +RL +FK + IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 277 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 335
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 162/299 (54%), Gaps = 11/299 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ A++G GKT F L LQ L E Q +V V+ TRELA QIS+++E
Sbjct: 45 GMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSV-----LVMCHTRELAFQISKEYER 98
Query: 69 LGSGI-SLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ +++ AV GG+ + + L K PHIVV TPGR++ L K +L +K+ +
Sbjct: 99 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFI 157
Query: 127 LDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
LDE D++L D + + EI + P +Q +FSAT++K+++ + R +++P++I +
Sbjct: 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217
Query: 186 YS-TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
T+ L+Q Y + K+ L +L + + ++F ++ LA +L A
Sbjct: 218 TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 277
Query: 245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
I I M Q +RL +FK + IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 162/299 (54%), Gaps = 11/299 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ A++G GKT F L LQ L E Q +V V+ TRELA QIS+++E
Sbjct: 45 GMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSV-----LVMCHTRELAFQISKEYER 98
Query: 69 LGSGI-SLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ +++ AV GG+ + + L K PHIVV TPGR++ L K +L +K+ +
Sbjct: 99 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFI 157
Query: 127 LDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185
LDE D++L D + + EI + P +Q +FSAT++K+++ + R +++P++I +
Sbjct: 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217
Query: 186 YS-TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244
T+ L+Q Y + K+ L +L + + ++F ++ LA +L A
Sbjct: 218 TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 277
Query: 245 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
I I M Q +RL +FK + IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 166/320 (51%), Gaps = 24/320 (7%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GK+++ A+TGSGKT A+A+PIL+ ++ + V++PTREL Q++
Sbjct: 31 GKNVVVRAKTGSGKTAAYAIPILELGMK------------SLVVTPTRELTRQVASHIRD 78
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
+G + + A + GG+ Q + + IVVATPGRL+D L + L + + +++D
Sbjct: 79 IGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLD-LWSKGVIDLSSFEIVIID 136
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 188
EAD + F + IL + T LFSAT+ ++++K+ + + N +IEA +
Sbjct: 137 EADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLAN 196
Query: 189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 248
V +++FV K V L E +VF RT + L + N AI +
Sbjct: 197 V-----EHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN----AIELR 247
Query: 249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXX 308
G + QS R ++ F+ GE ++LI TDVASRGLDIP V+ VIN+D P + + YIH
Sbjct: 248 GDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRT 307
Query: 309 XXXXXXXXXISLV-NQYELE 327
I+ + N+Y LE
Sbjct: 308 GRMGRKGEAITFILNEYWLE 327
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 167/334 (50%), Gaps = 59/334 (17%)
Query: 11 DLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS---EQF 66
D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI ++
Sbjct: 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEVKKI 118
Query: 67 EALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
+ G+ C LVGG D + K RP+IV+ATPGRL+D L + Y
Sbjct: 119 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178
Query: 125 LVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL------QR 171
VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL ++
Sbjct: 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK 238
Query: 172 ACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212
CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 239 ECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK-------- 290
Query: 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAGECN 269
++F T T L +L+N ++ +PI G ++Q+KR + +FK E
Sbjct: 291 -------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 343
Query: 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 344 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 167/334 (50%), Gaps = 59/334 (17%)
Query: 11 DLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS---EQF 66
D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI ++
Sbjct: 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEVKKI 118
Query: 67 EALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
+ G+ C LVGG D + K RP+IV+ATPGRL+D L + Y
Sbjct: 119 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178
Query: 125 LVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL------QR 171
VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL ++
Sbjct: 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK 238
Query: 172 ACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212
CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 239 ECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK-------- 290
Query: 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAGECN 269
++F T T L +L+N ++ +PI G ++Q+KR + +FK E
Sbjct: 291 -------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 343
Query: 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 344 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 167/334 (50%), Gaps = 59/334 (17%)
Query: 11 DLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS---EQF 66
D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI ++
Sbjct: 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEVKKI 169
Query: 67 EALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKY 124
+ G+ C LVGG D + K RP+IV+ATPGRL+D L + Y
Sbjct: 170 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229
Query: 125 LVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL------QR 171
VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL ++
Sbjct: 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK 289
Query: 172 ACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212
CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 290 ECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK-------- 341
Query: 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAGECN 269
++F T T L +L+N ++ +PI G ++Q+KR + +FK E
Sbjct: 342 -------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394
Query: 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 395 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 3/169 (1%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GKD++G A+TGSGKT AF +P+L+AL + + ++SPTRELA Q E
Sbjct: 62 GKDVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRK 119
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
+G +++GG D+ + + +I+V TPGRL+ H+ T F L+ LVLD
Sbjct: 120 VGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLD 178
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
EADR+L+ F +++ ++ +P+ RQT LFSAT TK VK L R LKNP
Sbjct: 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 6/169 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP--AFFACVLSPTRELAIQISEQF 66
G+DL+ A+TGSGKT AF +P ++ ++++ R +P +LSPTRELA+Q
Sbjct: 91 GRDLLAAAKTGSGKTLAFLIPAVELIVKL----RFMPRNGTGVLILSPTRELAMQTFGVL 146
Query: 67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ L + +++GG + + LG +I+VATPGRL+DH+ NT GF L+ LV
Sbjct: 147 KELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV 206
Query: 127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK 175
+DEADR+L+ FE+ L +I+ ++P RQT LFSAT T+KV+ L R LK
Sbjct: 207 IDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLK 255
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 22/312 (7%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
L + ++LI +Q+G+GKT AF L A+L E P LSPT ELA+Q
Sbjct: 58 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQCLC--LSPTYELALQT 111
Query: 63 SEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSL 119
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 112 GKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP 166
Query: 120 GTLKYLVLDEADRLLNDDFEKSLD-EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 226
Query: 179 KIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
I+ + T+DT+KQ Y ++ K L + ++ + M+F T LA L
Sbjct: 227 VIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT- 296
G + +SG M +R + +F+ G+ +L+ T+V +RG+D+ V +VIN+D+P
Sbjct: 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346
Query: 297 -----NSKDYIH 303
+++ Y+H
Sbjct: 347 KDGNPDNETYLH 358
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 22/312 (7%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
L + ++LI +Q+G+GKT AF L A+L E P LSPT ELA+Q
Sbjct: 74 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQCLC--LSPTYELALQT 127
Query: 63 SEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSL 119
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 128 GKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP 182
Query: 120 GTLKYLVLDEADRLLNDDFEKSLD-EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 183 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 242
Query: 179 KIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
I+ + T+DT+KQ Y ++ K L + ++ + M+F T LA L
Sbjct: 243 VIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 302
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT- 296
G + +SG M +R + +F+ G+ +L+ T+V +RG+D+ V +VIN+D+P
Sbjct: 303 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 362
Query: 297 -----NSKDYIH 303
+++ Y+H
Sbjct: 363 KDGNPDNETYLH 374
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 22/312 (7%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
L + ++LI +Q+G+GKT AF L A+L E P LSPT ELA+Q
Sbjct: 95 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQCLC--LSPTYELALQT 148
Query: 63 SEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSL 119
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 149 GKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP 203
Query: 120 GTLKYLVLDEADRLLNDDFEKSLD-EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 204 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 263
Query: 179 KIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
I+ + T+DT+KQ Y ++ K L + ++ + M+F T LA L
Sbjct: 264 VIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 323
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT- 296
G + +SG M +R + +F+ G+ +L+ T+V +RG+D+ V +VIN+D+P
Sbjct: 324 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 383
Query: 297 -----NSKDYIH 303
+++ Y+H
Sbjct: 384 KDGNPDNETYLH 395
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 22/312 (7%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
L + ++LI +Q+G+GKT AF L A+L E P LSPT ELA+Q
Sbjct: 125 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQCLC--LSPTYELALQT 178
Query: 63 SEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSL 119
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP 233
Query: 120 GTLKYLVLDEADRLLNDDFEKSLD-EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 293
Query: 179 KIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
I+ + T+DT+KQ Y ++ K L + ++ + M+F T LA L
Sbjct: 294 VIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 353
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT- 296
G + +SG M +R + +F+ G+ +L+ T+V +RG+D+ V +VIN+D+P
Sbjct: 354 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 413
Query: 297 -----NSKDYIH 303
+++ Y+H
Sbjct: 414 KDGNPDNETYLH 425
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 163/312 (52%), Gaps = 25/312 (8%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62
L + +++IG +Q+G+GKT AFAL +L + +VP A L+P+RELA QI
Sbjct: 152 LLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV------DASVPKPQAICLAPSRELARQI 205
Query: 63 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLG 120
+ +G ++ A + + ++ G + IV+ TPG +MD L +
Sbjct: 206 MDVVTEMGKYTEVKTAFGI------KDSVPKGAKIDAQIVIGTPGTVMD-LMKRRQLDAR 258
Query: 121 TLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD +L+ ++S+ I +++PR Q LFSAT +++V+K N
Sbjct: 259 DIKVFVLDEADNMLDQQGLGDQSM-RIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317
Query: 179 KIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237
+I ++ +V+ +KQ Y ++ +K LV + ++ +++F + D +A +
Sbjct: 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-- 295
G ++G++ ++R ++ F+ G +L+ T+V +RG+D+ V++V+NYD+P
Sbjct: 378 TADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD 437
Query: 296 ----TNSKDYIH 303
+ + Y+H
Sbjct: 438 QAGRPDPQTYLH 449
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 8/193 (4%)
Query: 10 KDLIGLAQTGSGKTGAFALPILQALL--EIAENQRTVPAFFAC-VLSPTRELAIQISEQF 66
+D++ AQTGSGKT AF +PI+ L+ ++ + + + A+ C +L+PTRELAIQI +
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120
Query: 67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ LR V+ GG D Q + H++VATPGRL+D + K SL KY+V
Sbjct: 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIV 179
Query: 127 LDEADRLLNDDFEKSLDEIL--NVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEA 182
LDEADR+L+ FE + +I+ + +P RQT +FSAT K+++KL L N + +
Sbjct: 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
Query: 183 ASKYSTVDTLKQQ 195
ST D++KQ+
Sbjct: 240 GRVGSTSDSIKQE 252
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 6/172 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GKDLIG A+TG+GKT AFALPI + L E R A VL+PTRELA+Q++ + A
Sbjct: 38 GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP---RALVLTPTRELALQVASELTA 94
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
+ L+ + GG +Q AL + VVATPGR +D+L L ++ VLD
Sbjct: 95 VAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLD 151
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
EAD +L+ FE+ ++ +L+ P RQT LFSAT+ K+L +KNPV I
Sbjct: 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 6/172 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GKDLIG A+TG+GKT AFALPI + L E R A VL+PTRELA+Q++ + A
Sbjct: 38 GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP---RALVLTPTRELALQVASELTA 94
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
+ L+ + GG +Q AL + VVATPGR +D+L L ++ VLD
Sbjct: 95 VAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLD 151
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
EAD +L+ FE+ ++ +L+ P RQT LFSAT+ K+L +KNPV I
Sbjct: 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 157/319 (49%), Gaps = 39/319 (12%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQ 61
L + +++I +Q+G+GKT AF+L +L + E A Q A L+P+RELA Q
Sbjct: 38 LLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ-------AICLAPSRELARQ 90
Query: 62 ISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
E + +G + ++V D ++ + + ++V TPG ++D L K L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVP--DSFEKNKQINAQ--VIVGTPGTVLD-LMRRKLMQLQK 145
Query: 122 LKYLVLDEADRLLNDDFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD +L D + D+ + V +P+ Q LFSAT V++ + + N
Sbjct: 146 IKIFVLDEADNML--DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN 203
Query: 179 KIEAASKYSTVDTLKQQYRFVPAKYKDCY----LVYILTEV----SASSTMVFTRTCDAT 230
+E + VD +KQ Y DC +LTE+ + S+++F T
Sbjct: 204 TLELQTNEVNVDAIKQLYM-------DCKNEADKFDVLTELYGVMTIGSSIIFVATKKTA 256
Query: 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 290
+L L++ G + G + +R ++ F+ G +LI T+V +RG+DIP+V MV+
Sbjct: 257 NVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316
Query: 291 NYDIPT------NSKDYIH 303
NYD+PT + YIH
Sbjct: 317 NYDLPTLANGQADPATYIH 335
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 157/319 (49%), Gaps = 39/319 (12%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQ 61
L + +++I +Q+G+GKT AF+L +L + E A Q A L+P+RELA Q
Sbjct: 38 LLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ-------AICLAPSRELARQ 90
Query: 62 ISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
E + +G + ++V D ++ + + ++V TPG ++D L K L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVP--DSFEKNKQINAQ--VIVGTPGTVLD-LMRRKLMQLQK 145
Query: 122 LKYLVLDEADRLLNDDFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD +L D + D+ + V +P+ Q LFSAT V++ + + N
Sbjct: 146 IKIFVLDEADNML--DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN 203
Query: 179 KIEAASKYSTVDTLKQQYRFVPAKYKDCY----LVYILTEV----SASSTMVFTRTCDAT 230
+E + VD +KQ Y DC +LTE+ + S+++F T
Sbjct: 204 TLELQTNEVNVDAIKQLYM-------DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTA 256
Query: 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 290
+L L++ G + G + +R ++ F+ G +LI T+V +RG+DIP+V MV+
Sbjct: 257 NVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316
Query: 291 NYDIPT------NSKDYIH 303
NYD+PT + YIH
Sbjct: 317 NYDLPTLANGQADPATYIH 335
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 10/177 (5%)
Query: 6 CDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISE 64
C G D+I AQ+G+GKT FA+ ILQ L +E E Q A VL+PTRELA QI +
Sbjct: 64 CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ-------ALVLAPTRELAQQIQK 116
Query: 65 QFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
ALG + C +GG ++ + L + PHIVV TPGR+ D L N + S +K
Sbjct: 117 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKWIK 175
Query: 124 YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
VLDEAD +L+ F+ + EI + Q L SATM V ++ + +++P++I
Sbjct: 176 MFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 8/172 (4%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ AQ+G+GKTG F++ LQ + +V A A +L+PTRELA+QI + A
Sbjct: 51 GHDVLAQAQSGTGKTGTFSIAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMA 104
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
L + ++ +GG ++ L + IVV TPGR+ D++ + F +K +LD
Sbjct: 105 LAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILD 162
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
EAD +L+ F++ + +I ++P Q L SATM V ++ ++NPV+I
Sbjct: 163 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 8/172 (4%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ AQ+G+GKTG F++ LQ + +V A A +L+PTRELA+QI + A
Sbjct: 58 GHDVLAQAQSGTGKTGTFSIAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMA 111
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
L + ++ +GG ++ L + IVV TPGR+ D++ + F +K +LD
Sbjct: 112 LAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILD 169
Query: 129 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
EAD +L+ F++ + +I ++P Q L SATM V ++ ++NPV+I
Sbjct: 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 221
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Query: 6 CDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISE 64
C G D+I AQ+G+G T FA+ ILQ + L++ Q A VL+PTRELA QI
Sbjct: 49 CIXGYDVIAQAQSGTGXTATFAISILQQIELDLXATQ-------ALVLAPTRELAQQIQX 101
Query: 65 QFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLK 123
ALG + C +GG ++ + L + PHI+V TPGR+ D L N + S +
Sbjct: 102 VVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDML-NRRYLSPXYIX 160
Query: 124 YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
VLDEAD +L+ F + +I + Q L SATM V ++ +++P++I
Sbjct: 161 MFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 102/175 (58%), Gaps = 10/175 (5%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G D++ A++G GKT F L LQ L E Q +V V+ TRELA QIS+++E
Sbjct: 51 GMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSV-----LVMCHTRELAFQISKEYER 104
Query: 69 LGSGI-SLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
+ +++ AV GG+ + + L K PHIVV TPGR++ L K +L +K+ +
Sbjct: 105 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA-LARNKSLNLKHIKHFI 163
Query: 127 LDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
LDE D++L D + + EI + P +Q +FSAT++K+++ + R +++P++I
Sbjct: 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 14/177 (7%)
Query: 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE--- 64
+G+D++ A+ G+GK+GA+ +P+L+ L +N + A V+ PTRELA+Q+S+
Sbjct: 39 SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQ------AMVIVPTRELALQVSQICI 92
Query: 65 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLK 123
Q G + GG ++ + L H+V+ATPGR++D + KG + + ++
Sbjct: 93 QVSKHMGGAKVMATT--GGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHVQ 148
Query: 124 YLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
+VLDEAD+LL+ DF + +++I+ +P+ RQ L+SAT V+K + L+ P +I
Sbjct: 149 MIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 8 AGKDLIGLAQTGSGKTGAFALPIL-----QALLEIAENQRTVPAFFACVLSPTRELAIQI 62
+G D++G+AQTGSGKT ++ LP + Q LE + VL+PTRELA Q+
Sbjct: 79 SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP------ICLVLAPTRELAQQV 132
Query: 63 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122
+ L+ + GG Q L + I +ATPGRL+D L K +L
Sbjct: 133 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRT 191
Query: 123 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
YLVLDEADR+L+ FE + +I++ I RQT ++SAT K+V++L LK+ + I
Sbjct: 192 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 249
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 8 AGKDLIGLAQTGSGKTGAFALPIL-----QALLEIAENQRTVPAFFACVLSPTRELAIQI 62
+G D++G+AQTGSGKT ++ LP + Q LE + VL+PTRELA Q+
Sbjct: 65 SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP------ICLVLAPTRELAQQV 118
Query: 63 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122
+ L+ + GG Q L + I +ATPGRL+D L K +L
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRT 177
Query: 123 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 180
YLVLDEADR+L+ FE + +I++ I RQT ++SAT K+V++L LK+ + I
Sbjct: 178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQ-- 65
G+ +G +QTG+GKT A+ LPI + + E AE Q A + +PTRELA QI +
Sbjct: 41 GESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ-------AVITAPTRELATQIYHETL 93
Query: 66 ----FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
F I RC L+GG D + L +PHIV+ TPGR+ D + + + T
Sbjct: 94 KITKFCPKDRXIVARC--LIGGTDKQKALEKLNVQPHIVIGTPGRINDFI-REQALDVHT 150
Query: 122 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
LV+DEAD L+ F +D+I P+ Q +FSAT+ +K+K + +NP
Sbjct: 151 AHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFSATIPEKLKPFLKKYXENP 206
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQAL--LEIAENQRTVPAFFACVLSPTRELAIQISEQF 66
G DLI +AQTG+GKT ++ +P L I+ QR P VL+PTRELA+ + +
Sbjct: 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGML--VLTPTRELALHVEAEC 114
Query: 67 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 126
S L+ + GG + Q + K I++ATPGRL D L +L ++ YLV
Sbjct: 115 SKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND-LQMNNSVNLRSITYLV 172
Query: 127 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+DEAD++L+ +FE + +IL + RQT + SAT V++L + LK+P+
Sbjct: 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM 224
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 196 YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSK 255
YR ++K LV++L + A+ ++VF R + LA LR G + G M Q K
Sbjct: 9 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 68
Query: 256 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXX 315
R A+ + G N+L+ TDVA+RG+DIP V V N+D+P + Y+H
Sbjct: 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 128
Query: 316 XXISLVNQYE 325
ISLV ++
Sbjct: 129 TAISLVEAHD 138
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 208 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267
L+Y+ S MVFTRT T +A L LG A + G MSQ +R + F+ GE
Sbjct: 22 LLYV---ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78
Query: 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+L+ TDVA+RGLDIP VD+V++Y +P ++ Y H
Sbjct: 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%)
Query: 211 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270
+L + S ++F RT + L L +LG I G M Q R +N+FK GE
Sbjct: 29 VLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRY 88
Query: 271 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 330
L+ TDVA+RG+DI ++ +VINYD+P + Y+H IS V +E +
Sbjct: 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLA 148
Query: 331 QIEKLIG 337
IE+ IG
Sbjct: 149 DIEEYIG 155
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 208 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267
L+Y+ S MVFTRT T +A L LG A + G +SQ +R L F+ GE
Sbjct: 25 LLYV---ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE 81
Query: 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+L+ TDVA+RGLDIP VD+V++Y +P ++ Y H
Sbjct: 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G DLI A++G+GKT F+ L +L + EN T +L+PTRE+A+QI A
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSL--VLENLSTQ----ILILAPTREIAVQIHSVITA 114
Query: 69 LGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 127
+G + L C V +GG + Q L K+ HI V +PGR+ L + G+++ +L
Sbjct: 115 IGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRI-KQLIELDYLNPGSIRLFIL 172
Query: 128 DEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
DEAD+LL + F++ ++ I + +P +Q SAT + + +++P
Sbjct: 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDP 223
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
G++L+ A TGSGKT AF++PIL L + A F A ++SPTRELA QI +
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANK-----GFRALIISPTRELASQIHRELIK 120
Query: 69 LGSGISLRCAVL-VGGVDMMQQTLALGKRPHIVVATPGRLMDHL-TNTKGFSLGTLKYLV 126
+ G R ++ V + K+ I+V TP RL+ L + G L ++++LV
Sbjct: 121 ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180
Query: 127 LDEADRLLNDDFEKSLDEILNVI-----PRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 181
+DE+D+L D D++ ++ ++R+ +FSAT V++ + L N + +
Sbjct: 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA-MFSATFAYDVEQWCKLNLDNVISVS 239
Query: 182 AASKYS 187
++ S
Sbjct: 240 IGARNS 245
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 187 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRLLALMLRNLGQRAI 245
ST + + Q+ +V K +L+ +L S T+VF T L L + G
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
I G SQ R AL++F++G+ IL+ T VA+RGLDI +V VIN+D+P++ ++Y+H
Sbjct: 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 132
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 194 QQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQ 253
Q+ +V + K YL+ L + + + D + +L G A+ I G Q
Sbjct: 32 QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQ 90
Query: 254 SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+R A+ F+ G+ ++L+ TDVAS+GLD P++ VINYD+P ++Y+H
Sbjct: 91 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 140
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 247
T+ + Q Y +V + K L + + + + +++F + LLA + LG I
Sbjct: 15 TLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYI 74
Query: 248 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
M Q R + F+ G C L+CTD+ +RG+DI +V++VIN+D P ++ Y+H
Sbjct: 75 HAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH 130
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 182 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 242 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 299 KDYIH 303
+YIH
Sbjct: 118 ANYIH 122
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 182 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 242 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 299 KDYIH 303
+YIH
Sbjct: 118 ANYIH 122
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 182 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 242 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 299 KDYIH 303
+YIH
Sbjct: 118 ANYIH 122
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQ 61
L + ++LI +Q+G+GKT AF L A+L E P C+ LSPT ELA+Q
Sbjct: 58 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQ---CLCLSPTYELALQ 110
Query: 62 ISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFS 118
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 111 TGKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFID 165
Query: 119 LGTLKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 166 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQ 61
L + ++LI +Q+G+GKT AF L A+L E P C+ LSPT ELA+Q
Sbjct: 125 LMLAEPPQNLIAQSQSGTGKTAAFVL----AMLSQVEPANKYPQ---CLCLSPTYELALQ 177
Query: 62 ISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLTNTKGFS 118
+ E +G L+ A V G L G++ IV+ TPG ++D + K
Sbjct: 178 TGKVIEQMGKFYPELKLAYAVRG-----NKLERGQKISEQIVIGTPGTVLDWCSKLKFID 232
Query: 119 LGTLKYLVLDEADRLLNDDFEKSLD-EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 177
+K VLDEAD ++ + I ++PR Q LFSAT V K + + +P
Sbjct: 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 192 LKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 250
+KQ Y V + YK L + +S + ++F T L LRN I
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 63
Query: 251 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
+ Q +R + +F++G ILI TD+ +RG+D+ V +VINYD+P N ++YIH
Sbjct: 64 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 116
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQ 61
L + +++I +Q+G+GKT AF+L +L + E A Q A L+P+RELA Q
Sbjct: 55 LLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ-------AICLAPSRELARQ 107
Query: 62 ISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGT 121
E + +G + ++V D ++ + ++V TPG ++D L K L
Sbjct: 108 TLEVVQEMGKFTKITSQLIVP--DSFEKNKQINA--QVIVGTPGTVLD-LMRRKLMQLQK 162
Query: 122 LKYLVLDEADRLLNDDFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACLKNPV 178
+K VLDEAD +L D + D+ + V +P+ Q LFSAT V++ + + N
Sbjct: 163 IKIFVLDEADNML--DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN 220
Query: 179 KIE 181
+E
Sbjct: 221 TLE 223
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 211 ILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 266
+LTE+ + S+++F T +L L++ G + G + +R ++ F+ G
Sbjct: 25 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 84
Query: 267 ECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 303
+LI T+V +RG+DIP+V MV+NYD+PT + YIH
Sbjct: 85 RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 127
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 182 AASKYSTVDTLKQQYRFVPAKYKDCY----LVYILTEV----SASSTMVFTRTCDATRLL 233
A+ VD +KQ Y DC +LTE+ + S+++F T +L
Sbjct: 1 GATNEVNVDAIKQLY-------XDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVL 53
Query: 234 ALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 293
L++ G + G + +R ++ F+ G +LI T+V +RG+DIP+V V+NYD
Sbjct: 54 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYD 113
Query: 294 IPT------NSKDYIH 303
+PT + YIH
Sbjct: 114 LPTLANGQADPATYIH 129
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 211 ILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 266
+LTE+ + S+++F T +L L++ G + G + +R ++ F+ G
Sbjct: 26 VLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 85
Query: 267 ECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 303
+LI T+V +RG+DIP+V V+NYD+PT + YIH
Sbjct: 86 RSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 192 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 251
L+Q Y + K+ L +L + + ++F ++ LA +L AI I M
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 252 SQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303
Q +RL +FK + IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 117
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 188 TVDTLKQQYRFVPAKYKDCY--LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 245
T++ ++Q Y + KD Y L I ++ ++F +T + L + + G +
Sbjct: 4 TLNNIRQYYVLCEHR-KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295
+SG ++ +R + +F+ G+ +LI T+V +RG+D+ V +V+N+D+P
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP 112
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 210 YILTEVSASSTMVFTRTCDATRLLALMLRN------LGQRAIPI--SGH------MSQSK 255
Y TE SA ++FT+T + L+ + +G +A + +GH M+Q++
Sbjct: 394 YTRTEESARG-IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNE 452
Query: 256 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 298
+ ++KF+ G+ N+LI T VA GLDI ++VI Y + TN
Sbjct: 453 QKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 495
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD-IPT 296
R +GQ + +SQ ++ L++F GE N+L+ T V GLD+P VD+V+ Y+ +P+
Sbjct: 390 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 449
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 18 TGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRC 77
TG GKT L A++ IAE + T +L+PT+ L +Q +E F L + +
Sbjct: 32 TGLGKT-------LIAMM-IAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83
Query: 78 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 136
L G +++ A R ++VATP + + L + SL + +V DEA R + +
Sbjct: 84 VALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGN 140
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 133 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTL 192
ND+ EK E+L+ + ++ +F T+ + KK+ + +NP + E +T+
Sbjct: 83 FYNDEKEKKF-EVLSGSGSLDESDIFLXTLFLRNKKILKKLAENP-EYENEKLTKLRNTI 140
Query: 193 KQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN------LGQRAIP 246
+ + TE SA ++FT+T + L+ + + +G +A
Sbjct: 141 XEHF--------------TRTEESARG-IIFTKTRQSAYALSQWITDNKKFAEVGVKAHH 185
Query: 247 I--SGHMS------QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 296
+ +GH S Q+++ ++KF+ G+ N+LI T VA GLDI ++VI Y + T
Sbjct: 186 LIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT 243
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GK+ I A TG GKT L L + Q+ FFA + + A S FE
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
LG I A + G + + I++ TP L+++L N SL + D
Sbjct: 79 LGYNI----ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLXIFD 134
Query: 129 E 129
E
Sbjct: 135 E 135
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 260 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 297
L F+A G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 208 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267
L + E S +++ + A L++ G A + + R KF+ +
Sbjct: 227 LXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
I++ T G++ P+V V+++DIP N + Y
Sbjct: 287 LQIVVATVAFGXGINKPNVRFVVHFDIPRNIESY 320
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 208 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267
L+ + E S +++ + A L++ G A + + R KF+ +
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301
I++ T G++ P+V V+++DIP N + Y
Sbjct: 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 290
G M + + +N F N+L+CT + G+DIP+ + +I
Sbjct: 846 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 260 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 297
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 491
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GK+ I A TG GKT L L + + Q+ FFA + + S+ FE
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
G ++ V + Q + + I++ TP L+++L SL ++ D
Sbjct: 88 HGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 143
Query: 129 E 129
E
Sbjct: 144 E 144
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 260 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 297
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 452 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 490
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GK+ I A TG GKT L L + + Q+ FFA + + S+ FE
Sbjct: 27 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 86
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
G ++ V + Q + + I++ TP L+++L SL ++ D
Sbjct: 87 HGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 142
Query: 129 E 129
E
Sbjct: 143 E 143
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 260 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 297
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 444 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 482
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68
GK+ I A TG GKT L L + + Q+ FFA + + S+ FE
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 78
Query: 69 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 128
G ++ V + Q + + I++ TP L+++L SL ++ D
Sbjct: 79 HGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 134
Query: 129 E 129
E
Sbjct: 135 E 135
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 39/83 (46%)
Query: 219 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 278
S +++ + + + + L+NLG A ++ + K+ A E +++ T
Sbjct: 269 SGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328
Query: 279 RGLDIPSVDMVINYDIPTNSKDY 301
G+D P V VI++ + + ++Y
Sbjct: 329 MGIDKPDVRFVIHHSMSKSMENY 351
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 177 PVKIEAASKYSTVDTLKQQYRFVPAKY---KDCYLVYILTEVSASSTMVFTRTCDATRLL 233
P + E + +D + + Y FV + ++VY L E S + +
Sbjct: 549 PGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNV---------KSA 599
Query: 234 ALMLRNLGQRAIP------ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 287
M L + P + G +SQ ++ + +F G +IL+ T V G+D+P +
Sbjct: 600 VEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659
Query: 288 MVI 290
+++
Sbjct: 660 VMV 662
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 506
Query: 280 GLDIPSVDMV 289
GLDIP V +V
Sbjct: 507 GLDIPEVSLV 516
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 280 GLDIPSVDMV 289
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 280 GLDIPSVDMV 289
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 16 AQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQIS-EQFEALGSGI 73
A TGSGKT IL+ LL+ +E + CV ++P LA Q+ + +E +
Sbjct: 949 APTGSGKTICAEFAILRMLLQSSEGR--------CVYITPMEALAEQVYMDWYEKFQDRL 1000
Query: 74 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGR 106
+ + +L G + L G +I+++TP +
Sbjct: 1001 NKKVVLLTGETSTDLKLLGKG---NIIISTPEK 1030
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 532
Query: 280 GLDIPSVDMV 289
GLDIP V +V
Sbjct: 533 GLDIPEVSLV 542
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 280 GLDIPSVDMV 289
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 16 AQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQIS-EQFEALGSGI 73
A TGSGKT IL+ LL+ +E + CV ++P LA Q+ + +E +
Sbjct: 949 APTGSGKTICAEFAILRMLLQSSEGR--------CVYITPMEALAEQVYMDWYEKFQDRL 1000
Query: 74 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGR 106
+ + +L G + L G +I+++TP +
Sbjct: 1001 NKKVVLLTGETSTDLKLLGKG---NIIISTPEK 1030
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 221 MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280
+V T T + L L+ +G + + + +R+ + + G+ ++L+ ++ G
Sbjct: 455 LVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 514
Query: 281 LDIPSVDMV 289
LDIP V +V
Sbjct: 515 LDIPEVSLV 523
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 221 MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280
+V T T + L L+ +G + + + +R+ + + G+ ++L+ ++ G
Sbjct: 449 LVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508
Query: 281 LDIPSVDMV 289
LDIP V +V
Sbjct: 509 LDIPEVSLV 517
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 217 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 276
T+V T L L G RA + + KR + + G + L+ ++
Sbjct: 440 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 499
Query: 277 ASRGLDIPSVDMV 289
GLDIP V +V
Sbjct: 500 LREGLDIPEVSLV 512
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 217 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 276
T+V T L L G RA + + KR + + G + L+ ++
Sbjct: 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 498
Query: 277 ASRGLDIPSVDMV 289
GLDIP V +V
Sbjct: 499 LREGLDIPEVSLV 511
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,036,852
Number of Sequences: 62578
Number of extensions: 326201
Number of successful extensions: 1493
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 97
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)